In the bacterium Pseudomonas aeruginosa, the synthesis and
secretion of extracellular protease is a typical cooperative
behavior regulated by quorum sensing. However, this type
of cooperative behavior is easily exploited by other individuals
who do not synthesize public goods, which is known
as the “tragedy of the commons”. Here P. aeruginosa was inoculated
into casein media with different nitrogen salts added.
In casein broth, protease (a type of public good) is necessary
for bacterial growth. After 30 days of sequential transfer,
some groups propagated stably and avoided “tragedy of the
commons”. The evolved cooperators who continued to synthesize
protease were isolated from these stable groups. By
comparing the characteristics of quorum sensing in these
cooperators, an identical evolutionary pattern was found. A
variety of cooperative behaviors regulated by quorum sensing,
such as the synthesis and secretion of protease and signals,
were significantly reduced during the process of evolution.
Such reductions improved the efficiency of cooperation, helping
to prevent cheating. In addition, the production of pyocyanin,
which is regulated by the RhlIR system, increased
during the process of evolution, possibly due to its role in
stabilizing the cooperation. This study contributes towards
our understanding of the evolution of quorum sensing of P.
aeruginosa.
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A Gram-negative, motile, rod-shaped, aerobic bacterial strain,
designated S7-2-11T, was isolated from apple orchard soil
from Gyeongsangnam-do Province, Republic of Korea, and
was characterized taxonomically using a polyphasic approach.
16S rRNA gene sequence analysis indicated that strain S7-2-
11T belongs to the family Cytophagaceae in phylum Bacteroidetes,
and is closely related to Spirosoma luteolum 16F6ET
(94.2% identity), Spirosoma knui 15J8-12T (92.7%), and Spirosoma
linguale DSM 74T (91.0%). The G + C content of the genomic
DNA of strain S7-2-11T was 49.8 mol%. Strain S7-2-11T
contained summed feature 3 (C16:1 ω7c/C16:1 ω6c; 35.1%), C16:1
ω5c (22.4%), C15:0 iso (13.9%), and C17:0 iso 3-OH (10.6%) as
major cellular fatty acids, and MK-7 as the predominant respiratory
quinone. The main polar lipids were phosphatidylethanolamine,
an unidentified aminophospholipid, and two
unidentified polar lipids. Phenotypic and chemotaxonomic
data supported the affiliation of strain S7-2-11T with the genus
Spirosoma. The results of physiological and biochemical
tests showed the genotypic and phenotypic differentiation of
the isolate from recognized Spirosoma species. On the basis
of its phenotypic properties, genotypic distinctiveness, and
chemotaxonomic features, strain S7-2-11T represents a novel
species of the genus Spirosoma, for which the name Spirosoma
pomorum sp. nov. is proposed. The type strain is S7-2-11T
(= KCTC 52726T = JCM 32130T).
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strain designated 119BY6-57T was isolated from spongin. The
taxonomic position of the novel isolate was confirmed using
the polyphasic approach. Strain 119BY6-57T grew well at 25–
30°C on marine agar. On the basis of 16S rRNA gene sequence
similarity, strain 119BY6-57T belongs to the family Xanthomonadaceae
and is related to Lysobacter aestuarii S2-CT
(99.8% sequence similarity), L. maris KMU-14T (97.5%), and
L. daejeonensis GH1-9T (97.3%). Lower sequence similarities
(97.0%) were found with all of the other recognized members
of the genus Lysobacter. The G + C content of the genomic
DNA was 69.9 mol%. The major respiratory quinone was Q-8
and the major fatty acids were C16:0 iso, C15:0 iso, summed feature
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phosphatidylethanolamine, diphosphatidylglycerol, three unidentified
phospholipids, and an unidentified polar lipid. DNADNA
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nov. is proposed. The type strain is 119BY6-57T (= KACC
19276T = LMG 30077T).
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region. To address this deficit, we collected eight samples to
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river, located at the arid region of northwestern China (an
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sub-community along the river: the relative abundance of the
dominant members gradually decreased as the rare members
increased. We report that temperature and spatial distance
were significantly related to the variation of bacterial community.
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community, the methanogenic groups, mainly Methanosaeta
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community was independent of the environmental and
spatial factors. We propose that the inoculation of soil-derived
archaea is responsible for the archaeal community in
the Kaidu river. Together, our study demonstrated that the
bacterial community in the high-elevation Kaidu river is a
continuum, whereas the archaeal community is not.
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acceptors. In this study, a novel CDase (LPCD) gene was
cloned from Lactobacillus plantarum WCFS1, which encodes
574 amino acids (64.6 kDa) and shares less than 44% of identities
with the known CDase-family enzymes. Recombinant
LPCD with C-terminal six-histidines was produced and purified
from Escherichia coli. It showed the highest activity
on β-CD at 45°C and pH 5.0, respectively. Gel permeation
chromatography analysis revealed that LPCD exists as a dodecameric
form (~826 kDa). Its hydrolyzing activity on β-
CD is almost same as that on starch, whereas it can hardly
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regions of China. Polyphasic approaches were utilized
for species identification. Non-aflatoxin and non-cyclopiazonic
acid (CPA)-producing strains were further screened
for aflatoxin B1 (AFB1) biosynthesis pathway gene clusters
using a PCR assay. Strains lacking an amplicon for the regulatory
gene aflR were then analyzed for the presence of the
other 28 biosynthetic genes. Only 229 (32%) of the A. flavus
strains were found to be atoxigenic. Smaller (S) sclerotial phenotypes
were dominant (51%) compared to large (L, 34%) and
non-sclerotial (NS, 15%) phenotypes. Among the atoxigenic
strains, 24 strains were PCR-negative for the fas-1 and aflJ
genes. Sixteen (67%) atoxigenic A. flavus strains were PCRnegative
for 10 or more of the biosynthetic genes. Altogether,
18 new PCR product patterns were observed, indicating great
diversity in the AFB1 biosynthesis pathway. The current study
demonstrates that many atoxigenic A. flavus strains can be
isolated from different regions of China. In the future laboratory
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broad antimicrobial activities against antibiotic-resistant
bacteria. Considering the progressive antibiotic resistance,
cathelicidin is a candidate for use as an alternative approach
to treat and overcome the challenge of antimicrobial resistance.
Cathelicidin-BF (Cath-BF) is a short antimicrobial peptide,
which was originally extracted from the venom of Bungarus
fasciatus. Recent studies have reported that Cath-BF and some
related derivatives exert strong antimicrobial and weak hemolytic
properties. This study investigates the bactericidal
and cytotoxic effects of Cath-BF and its analogs (Cath-A and
Cath-B). Cath-A and Cath-B were designed to increase their
net positive charge, to have more activity against methicillin
resistant S. aureus (MRSA). The results of this study show
that Cath-A, with a +17-net charge, has the most noteworthy
antimicrobial activity against MRSA strains, with minimum
inhibitory concentration (MIC) ranging between 32–128
μg/ml. The bacterial kinetic analysis by 1 × MIC concentration
of each peptide shows that Cath-A neutralizes the clinical
MRSA isolate for 60 min. The present data support the
notion that increasing the positive net charge of antimicrobial
peptides can increase their potential antimicrobial activity.
Cath-A also displayed the weakest cytotoxicity effect
against human umbilical vein endothelial and H9c2 rat cardiomyoblast
cell lines. Analysis of the hemolytic activity reveals
that all three peptides exhibit minor hemolytic activity
against human erythrocytes at concentrations up to 250 μg/ml.
Altogether, these results suggest that Cath-A and Cath-B are
competent candidates as novel antimicrobial compounds
against MRSA and possibly other multidrug resistant bacteria.
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Lactobacillus strains have been considered good candidates
as biological control agents for prevention or treatment of
plant and animal infections. One L. plantarum strain FB003
and three strains (FB011, FB081, and FB110) which closed
to L. sakei were isolated from fermented and salted shrimp
and their abilities in inhibiting growth of Vibrio parahaemolyticus
were characterized. These strains were selected as
potential probiotics based on their oro-gastro-intestinal resistance,
gut colonization, adhesion to Caco-2 cells, antimicrobial
activities, antibiotic resistance, and safety aspects. Results of this study revealed that these isolates possessed high
aggregation activities against pathogens in host intestines.
Strain FB011 strain showed higher coaggregation and immunomodulatory
activity in the gastro-intestinal tract than
L. plantarum. These difference effects of Lactobacillus strains
provide valuable information about using them to prevent
Vibrio infections in the aquaculture industry.
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The potential use of dietary measures to treat influenza can
be an important alternative for those who lack access to influenza
vaccines or antiviral drugs. Lactobacillus plantarum
(Lp) is one of many lactic acid bacteria that grow in ‘kimchi’,
an essential part of Korean meal, and several strains of Lp
reportedly show protective effects against influenza. Using
heat-killed Lp (nF1) isolated from kimchi, which is known
for its immunomodulatory effects, we investigated whether
regular oral intake of nF1 could influence the outcome of influenza
virus infection in a mouse model. In a lethal challenge
with influenza A (H1N1 and H3N2 subtypes) and influenza
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infected mice and resulted in increased survival rates compared
with those of the non-treated mice. Consistent with
these observations, nF1 treatment also significantly reduced
viral replication in the lungs of the infected mice. Taken together,
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