Vaccines are one of the most powerful tools for preventing infectious diseases. To effectively fight pathogens, vaccines should
induce potent and long-lasting immune responses that are specific to the pathogens. However, not all vaccines can induce
effective immune responses, and the responses vary greatly among individuals and populations. Although several factors, such
as age, host genetics, nutritional status, and region, affect the effectiveness of vaccines, increasing data have suggested that
the gut microbiota is critically associated with vaccine-induced immune responses. In this review, I discuss how gut microbiota
affects vaccine effectiveness based on the clinical and preclinical data, and summarize possible underlying mechanisms
related to the adjuvant effects of microbiota. A better understanding of the link between vaccine-induced immune responses
and the gut microbiota using high-throughput technology and sophisticated system vaccinology approaches could provide
crucial insights for designing effective personalized preventive and therapeutic vaccination strategies.
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Eleven bacterial strains were isolated from freshwater environments and identified as Flavobacterium based on 16S rRNA
gene sequence analyses. Complete genome sequences of the 11 strains ranged from 3.45 to 5.83 Mb with G + C contents
of 33.41–37.31%. The average nucleotide identity (ANI) values showed that strains IMCC34515T
and IMCC34518 belonged to the same species, while the other nine strains represented each separate species. The ANI values between
the strains and their closest Flavobacterium species exhibited ≤ 91.76%, indicating they represent each novel species. All
strains had similar characteristics such as being Gram-stain-negative, rod-shaped, and contained iso-C15:0 as the predominant
fatty acid, menaquinone-6 as the respiratory quinone, and phosphatidylethanolamine and aminolipids as major polar
lipids. Genomic, phylogenetic, and phenotypic characterization confirmed that the 11 strains were distinct from previously
recognized Flavobacterium species. Therefore, Flavobacterium praedii sp. nov. (IMCC34515T = KACC 22282T = NBRC 114937T),
Flavobacterium marginilacus sp. nov. (IMCC34673T = KACC 22284T = NBRC 114940T), Flavobacterium aestivum sp. nov.
(IMCC34774T = KACC 22285T = NBRC 114941T), Flavobacterium flavigenum sp. nov. (IMCC34775T = KACC22286T = NBRC 114942T),
Flavobacterium luteolum sp. nov. (IMCC34776T = KACC 22287T = NBRC 114943T), Flavobacterium gelatinilyticum sp. nov.
(IMCC34777T = KACC 22288T = NBRC 114944T), Flavobacterium aquiphilum sp.nov. (IMCC34779T = KACC 22289T = NBRC 114945T),
Flavobacterium limnophilum sp. nov. (IMCC36791T = KACC22290T = NBRC 114947T), Flavobacterium lacustre sp. nov.
(IMCC36792T = KACC 22291T = NBRC 114948T), and Flavobacterium eburneipallidum sp. nov. (IMCC36793T = KACC 22292T = NBRC 114949T)
are proposed as novel species.
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The existence of biogeography for microorganisms is a raising topic in ecology and researchers are employing better distinctions
between single species, including the most rare ones, to reveal potential hidden patterns. An important volume
of evidence supporting heterogeneous distributions for bacteria, archaea and protists is accumulating, and more recently
a few efforts have targeted microscopic fungi. We propose an insight into this latter kingdom by looking at a group of soil
nematode-trapping fungi whose species are well-known and easily recognizable. We chose a pure culture approach because
of its reliable isolation procedures for this specific group. After morphologically and molecularly identifying all species
collected from 2250 samples distributed in 228 locations across Yunnan province of China, we analyzed occurrence frequencies
and mapped species, genera, and richness. Results showed an apparent cosmopolitan tendency for this group of
fungi, including species richness among sites. However, only four species were widespread across the region, while nonrandom
heterogeneous distributions were observed for the remaining 40 species, both in terms of statistical distribution of
species richness reflected by a significant variance-to-mean ratio, as well as in terms of visually discernible spatial clusters
of rare species and genera on the map. Moreover, several species were restricted to only one location, raising the question
of whether endemicity exists for this microbial group. Finally, environmental heterogeneity showed a marginal contribution
in explaining restricted distributions, suggesting that other factors such as geographical isolation and dispersal capabilities
should be explored. These findings contribute to our understanding of the cryptic geographic distribution of microorganisms
and encourage further research in this direction.
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The Fusarium graminearum species complex (FGSC) can produce various mycotoxins and is a major concern for food
quantity and quality worldwide. In this study, we determined the effects of water activity (
aw), temperature, incubation time
and their interactions on mycotoxin accumulation and the expression levels of biosynthetic genes in FGSC strains from
maize samples in China. The highest deoxynivalenol (DON), 3-acetyldeoxynivalenol(3ADON) and 15-acetyldeoxynivalenol
(15ADON) levels of the F. boothii and F. graminearum strains were observed at 0.98 aw/
30 °C or 0.99 aw/
25 °C. F. asiaticum
and F. meridionale reached maximum nivalenol (NIV) and 4-acetylnivalenol (4ANIV) contents at 0.99 aw
and 30 °C. With
the extension of the incubation time, the concentrations of DON and NIV gradually increased, while those of their derivatives
decreased. F. boothii, F. meridionale and one F. asiaticum strain had the highest zearalenone (ZEN) values at 0.95 aw
and 25 °C, while the optimum conditions for the other F. asiaticum strain and F. graminearum were 0.99 aw
and 30 °C. Four
genes associated with trichothecene and zearalenone synthesis were significantly induced under higher water stress in the
early stage of production. The results indicated independence of mycotoxin production and gene expression, as maximum
amounts of these toxic metabolites were observed at higher aw
in most cases. This study provides useful information for the
monitoring and prevention of such toxins entering the maize production chain.
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Silver nanoparticles (AgNPs) exhibit strong antibacterial activity and do not easily induce drug resistance; however, the
poor stability and biocompatibility in solution limit their widespread application. In this study, AgNPs were modified with
Polygonatum sibiricum Polysaccharide (PSP) to synthesize PSP@AgNPs with good stability, biocompatibility, and antibacterial
activity. When PSP@AgNP synthesis was performed under a reaction time of 70 min, a reaction temperature of 35 °C,
and an AgNO3-
to-PSP volume ratio of 1:1, the synthesized PSP@AgNPs were more regular and uniform than AgNPs, and
their particle size was around 10 nm. PSP@AgNPs exhibited lower cytotoxicity and hemolysis, and stronger bacteriostatic
activity. PSP@AgNPs damage the integrity and internal structure of cells, resulting in the leakage of intracellular nucleic
acids and proteins. The rate of cell membrane damage in Escherichia coli and Staphylococcus aureus treated with PSP@
AgNPs increased by 38.52% and 43.75%, respectively, compared with that of AgNPs. PSP@AgNPs inhibit the activities
of key enzymes related to antioxidant, energy and substance metabolism in cells. The inhibitory effects on the activities of
superoxide dismutase (SOD), catalase (CAT), adenosine triphosphate enzyme (ATPase), malate dehydrogenase (MDH),
and succinate dehydrogenase (SDH) in E. coli and S. aureus cells were significantly higher than those of AgNPs. In addition,
compared with AgNPs, PSP@AgNPs promote faster healing of infected wounds. Therefore, PSP@AgNPs represent
potential antibacterial agents against wound infections.
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Escherichia coli is a preferred strain for recombinant protein production, however, it is often plagued by phage infection
during experimental studies and industrial fermentation. While the existing methods of obtaining phage-resistant strains
by natural mutation are not efficient enough and time-consuming. Herein, a high-throughput method by combining Tn5
transposon mutation and phage screening was used to produce Escherichia coli BL21 (DE3) phage-resistant strains. Mutant
strains PR281-7, PR338-8, PR339-3, PR340-8, and PR347-9 were obtained, and they could effectively resist phage infection.
Meanwhile, they had good growth ability, did not contain pseudolysogenic strains, and were controllable. The resultant
phage-resistant strains maintained the capabilities of producing recombinant proteins since no difference in mCherry red
fluorescent protein expression was found in phage-resistant strains. Comparative genomics showed that PR281-7, PR338-8,
PR339-3, and PR340-8 mutated in ecpE, nohD, nrdR, and livM genes, respectively. In this work, a strategy was successfully
developed to obtain phage-resistant strains with excellent protein expression characteristics by Tn5 transposon mutation.
This study provides a new reference to solve the phage contamination problem.
Microbial communities played a vital role in maintaining homeostasis of ocular surface. However, no studies explored the
myopia-associated conjunctiva microbiota changes until now. In this study, conjunctival sac swab specimens were collected
from 12 eyes of low myopia (LM), and 14 eyes of high myopia (HM) patients. The V3–V4 region of the 16S rRNA gene was
amplified and then sequenced. Statistical analysis was performed to investigate differences in the taxonomy and diversity
between two groups. Compared to LM, higher Ocular Surface Disease Index (OSDI) scores were observed in HM group. The
Shannon index of the HM was lower than that of the LM group (P = 0.017). Principle coordinate analysis and Partial Least
Squares Discrimination Analysis showed distinct microbiome composition between two groups. At the phylum level, there
were higher relative abundances of Proteobacteria (68.27% vs 38.51%) and lower abundances of Actinobacteria (3.71% vs
9.19%) in HM, compared to LM group (P = 0.031, 0.010, respectively). At the genus level, the abundances of Acinetobacter
in HM (18.16%) were significantly higher than the LM (6.52%) group (P = 0.011). Actinobacteria levels were negatively
correlated with the myopic spherical equivalent and OSDI scores. Moreover, positive correlations were found between
Proteobacteria levels and OSDI scores, Acinetobacter levels were positively correlated with myopic spherical equivalent
and OSDI scores. In conclusion, HM Patients have bacterial microbiota imbalance in the conjunctival sac, compared with
LM patients. Proteobacteria, Actinobacteria, Acinetobacter may play roles in the HM associated ocular surface irritation.
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Norovirus (NoV) is the most common viral cause of acute gastroenteritis worldwide. Vitamin A has demonstrated the
potential to protect against gastrointestinal infections. However, the effects of vitamin A on human norovirus (HuNoV)
infections remain poorly understood. This study aimed to investigate how vitamin A administration affects NoV replication.
We demonstrated that treatment with retinol or retinoic acid (RA) inhibited NoV replication in vitro based on their effects
on HuNoV replicon-bearing cells and murine norovirus-1 (MNV-1) replication in murine cells. MNV replication in vitro
showed significant transcriptomic changes, which were partially reversed by retinol treatment. RNAi knockdown of CCL6,
a chemokine gene that was downregulated by MNV infection but upregulated by retinol administration, resulted in increased
MNV replication in vitro. This suggested a role of CCL6 in the host response to MNV infections. Similar gene expression
patterns were observed in the murine intestine after oral administration of RA and/or MNV-1.CW1. CCL6 directly decreased
HuNoV replication in HG23 cells, and might indirectly regulate the immune response against NoV infection. Finally, relative
replication levels of MNV-1.CW1 and MNV-1.CR6 were significantly increased in CCL6 knockout RAW 264.7 cells. This
study is the first to comprehensively profile transcriptomes in response to NoV infection and vitamin A treatment in vitro,
and thus may provide new insights into dietary prophylaxis and NoV infections.