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Volume 56(7); July 2018
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Review
[MINIREVIEW] Interdependence between iron acquisition and biofilm formation in Pseudomonas aeruginosa
Donghoon Kang , Natalia V. Kirienko
J. Microbiol. 2018;56(7):449-457.   Published online June 14, 2018
DOI: https://doi.org/10.1007/s12275-018-8114-3
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AbstractAbstract
Bacterial biofilms remain a persistent threat to human healthcare due to their role in the development of antimicrobial resistance. To combat multi-drug resistant pathogens, it is crucial to enhance our understanding of not only the regulation of biofilm formation, but also its contribution to bacterial virulence. Iron acquisition lies at the crux of these two subjects. In this review, we discuss the role of iron acquisition in biofilm formation and how hosts impede this mechanism to defend against pathogens. We also discuss recent findings that suggest that biofilm formation can also have the reciprocal effect, influencing siderophore production and iron sequestration.

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  • Metal chelation as an antibacterial strategy for Pseudomonas aeruginosa and Acinetobacter baumannii
    Martina M. Golden, Amelia C. Heppe, Cassandra L. Zaremba, William M. Wuest
    RSC Chemical Biology.2024; 5(11): 1083.     CrossRef
  • Iron transport pathways in the human malaria parasite Plasmodium falciparum revealed by RNA-sequencing
    Juliane Wunderlich, Vadim Kotov, Lasse Votborg-Novél, Christina Ntalla, Maria Geffken, Sven Peine, Silvia Portugal, Jan Strauss
    Frontiers in Cellular and Infection Microbiology.2024;[Epub]     CrossRef
  • Taxonomic and functional characterization of biofilms from a photovoltaic panel reveals high genetic and metabolic complexity of the communities
    Viviane Faria Morais Jotta, Glen Jasper Yupanqui García, Paula Luize Camargos Fonseca, Angela de Mello Ferreira, Vasco Azevedo, Bertram Brenig, Aristóteles Góes-Neto, Fernanda Badotti
    Journal of Applied Microbiology.2024;[Epub]     CrossRef
  • Global transcriptome analysis of Pseudomonas aeruginosa NT06 response to potassium chloride, sodium lactate, sodium citrate, and microaerophilic conditions in a fish ecosystem
    Natalia Tomaś, Kamila Myszka, Łukasz Wolko, Wojciech Juzwa
    FEMS Microbiology Letters.2024;[Epub]     CrossRef
  • Compassionate use of cefiderocol in a complex case of extensively drug-resistant Acinetobacter baumannii fracture-related infection: a comprehensive approach and multidisciplinary management
    Flavia Petrucci, Beatrice Perciballi, Marco Rivano Capparuccia, Giancarlo Iaiani, Federico Lo Torto, Diego Ribuffo, Stefano Gumina, Daniele De Meo
    Infection.2024; 52(6): 2487.     CrossRef
  • Ultrafiltration (UF) and biological oxygen-dosed activated carbon (BODAC) filtration to prevent fouling of reversed osmosis (RO) membranes: A mass balance analysis
    Sara Ribeiro Pinela, Amanda Larasati, Roel J.W. Meulepas, Maria Cristina Gagliano, Robbert Kleerebezem, Harry Bruning, Huub H.M. Rijnaarts
    Journal of Water Process Engineering.2024; 57: 104648.     CrossRef
  • Deferiprone-Gallium-Protoporphyrin Chitogel Decreases Pseudomonas aeruginosa Biofilm Infection without Impairing Wound Healing
    Tahlia L. Kennewell, Hanif Haidari, Suzanne Mashtoub, Gordon S. Howarth, Catherine Bennett, Clare M. Cooksley, Peter John Wormald, Allison J. Cowin, Sarah Vreugde, Zlatko Kopecki
    Materials.2024; 17(4): 793.     CrossRef
  • Antimicrobial activity of iron-depriving pyoverdines against human opportunistic pathogens
    Vera Vollenweider, Karoline Rehm, Clara Chepkirui, Manuela Pérez-Berlanga, Magdalini Polymenidou, Jörn Piel, Laurent Bigler, Rolf Kümmerli
    eLife.2024;[Epub]     CrossRef
  • Influence of carbonyl cyanide m-chlorophenyl hydrazone on biofilm dynamics, protease, and siderophore production by Burkholderia pseudomallei
    Glaucia Morgana de Melo Guedes, Crister José Ocadaque, Bruno Rocha Amando, Alyne Soares Freitas, Vinicius Carvalho Pereira, Rossana de Aguiar Cordeiro, Silviane Praciano Bandeira, Pedro Filho Noronha Souza, Marcos Fábio Gadelha Rocha, José Júlio Costa Sid
    Biofouling.2024; 40(8): 514.     CrossRef
  • Siderophores: A Case Study in Translational Chemical Biology
    Andrew R. LeBlanc, William M. Wuest
    Biochemistry.2024; 63(15): 1877.     CrossRef
  • Pseudomonas aeruginosa kills Staphylococcus aureus in a polyphosphate-dependent manner
    Ritika Shah, Julius Kwesi Narh, Magdalena Urlaub, Olivia Jankiewicz, Colton Johnson, Barry Livingston, Jan-Ulrik Dahl, Craig D. Ellermeier
    mSphere.2024;[Epub]     CrossRef
  • Deferiprone and Gallium-Protoporphyrin Chitogel as an antimicrobial treatment: Preclinical studies demonstrating antimicrobial activity for S. aureus infected cutaneous wounds
    T.L. Kennewell, H. Haidari, S. Mashtoub, G.S. Howarth, P.J. Wormald, A.J. Cowin, S. Vreugde, Z. Kopecki
    International Journal of Biological Macromolecules.2024; 276: 133874.     CrossRef
  • In vitro lung epithelial cell model reveals novel roles for Pseudomonas aeruginosa siderophores
    Donghoon Kang, Qi Xu, Natalia V. Kirienko, Giordano Rampioni
    Microbiology Spectrum.2024;[Epub]     CrossRef
  • In vitro effect of the iron chelator deferiprone on the antimicrobial susceptibility and biofilms of Burkholderia pseudomallei
    Glaucia Morgana de Melo Guedes, Késia Veras Costa Ribeiro, Emanuela Silva de Araújo, Vinícius Carvalho Pereira, Ana Carla de Castro Freitas Soares, Alyne Soares Freitas, Rossana de Aguiar Cordeiro, José Júlio Costa Sidrim, Marcos Fábio Gadelha Rocha, Débo
    Biofouling.2023; 39(2): 135.     CrossRef
  • Gallium-enabled bactericidal medicine
    Yong Liu, Fei Yang, Zixin Pan, Zhenzhen Fu, Xiaoli Jiang, Zhenping Cao, Juanjuan Li, Hao Wang
    Materials Today.2023; 67: 548.     CrossRef
  • Study on the inhibitory effect of quercetin combined with gentamicin on the formation of Pseudomonas aeruginosa and its bioenvelope
    Shuangyan Luo, Xinyun Kang, Xiaofeng Luo, Caixia Li, Guiqin Wang
    Microbial Pathogenesis.2023; 182: 106274.     CrossRef
  • Antibiofilm activity of promethazine, deferiprone, and Manuka honey in an ex vivo wound model
    Gláucia Morgana de Melo Guedes, Alyne Soares Freitas, Rodrigo Machado Pinheiro, Vinicius Carvalho Pereira, Carliane Melo Alves Melgarejo, Emanuela Silva de Araujo, Késia Veras Costa Ribeiro, Silviane Praciano Bandeira, Rossana de Aguiar Cordeiro, Marcos F
    Letters in Applied Microbiology.2023;[Epub]     CrossRef
  • Absence of proline-peptide transporter YjiY in Salmonella Typhimurium leads to secretion of factors which inhibits intra-species biofilm formation
    Kasturi Chandra, Abhilash Vijay Nair, Ritika Chatterjee, Prerana Muralidhara, Anmol Singh, Sathisha Kamanna, Utpal S. Tatu, Dipshikha Chakravortty
    Microbiological Research.2023; 273: 127411.     CrossRef
  • Study on pyoverdine and biofilm production with detection of LasR gene in MDR Pseudomonas aeruginosa
    Esraa H. Hamza, Ashraf M. El-Shawadfy, Ayman A. Allam, Wesam A. Hassanein
    Saudi Journal of Biological Sciences.2023; 30(1): 103492.     CrossRef
  • Mobilization of iron stored in bacterioferritin, a new target for perturbing iron homeostasis and developing antibacterial and antibiofilm molecules
    Mario Rivera
    Journal of Inorganic Biochemistry.2023; 247: 112306.     CrossRef
  • Novel marine metalloprotease—new approaches for inhibition of biofilm formation of Stenotrophomonas maltophilia
    Marie Kristin Peters, Yekaterina Astafyeva, Yuchen Han, Jascha F. H. Macdonald, Daniela Indenbirken, Jacqueline Nakel, Sanamjeet Virdi, Guido Westhoff, Wolfgang R. Streit, Ines Krohn
    Applied Microbiology and Biotechnology.2023; 107(23): 7119.     CrossRef
  • Legionella pneumophila Rhizoferrin Promotes Bacterial Biofilm Formation and Growth within Amoebae and Macrophages
    Alberto E. Lopez, Lubov S. Grigoryeva, Armando Barajas, Nicholas P. Cianciotto, Craig R. Roy
    Infection and Immunity.2023;[Epub]     CrossRef
  • The action of phytochemicals in biofilm control
    Ariana S. C. Gonçalves, Miguel M. Leitão, Manuel Simões, Anabela Borges
    Natural Product Reports.2023; 40(3): 595.     CrossRef
  • Virulence-associated genes and antimicrobial resistance patterns in bacteria isolated from pregnant and nonpregnant women with urinary tract infections: the risk of neonatal sepsis
    Uriel A. Angulo-Zamudio, Hector Flores-Villaseñor, Nidia Leon-Sicairos, Dina Zazueta-Armenta, Francisco A. Martínez-Villa, Gabriela Tapia-Pastrana, Jorge Angulo-Rocha, Joel Murillo-Llanes, Mario Francisco Barajas-Olivas, Adrian Canizalez-Roman
    Canadian Journal of Microbiology.2023; 69(12): 488.     CrossRef
  • Insight into the Global Negative Regulation of Iron Scavenger 7-HT Biosynthesis by the SigW/RsiW System in Pseudomonas donghuensis HYS
    Shiyu Teng, Tingting Wu, Donghao Gao, Siyi Wu, Yaqian Xiao, Yan Long, Zhixiong Xie
    International Journal of Molecular Sciences.2023; 24(2): 1184.     CrossRef
  • Host-microbe interactions in chronic rhinosinusitis biofilms and models for investigation
    Emily J. Vanderpool, Kendra P. Rumbaugh
    Biofilm.2023; 6: 100160.     CrossRef
  • Mechanisms of iron homeostasis in Pseudomonas aeruginosa and emerging therapeutics directed to disrupt this vital process
    Ana Sánchez‐Jiménez, Francisco J. Marcos‐Torres, María A. Llamas
    Microbial Biotechnology.2023; 16(7): 1475.     CrossRef
  • Host cell responses against the pseudomonal biofilm: A continued tale of host-pathogen interactions
    Sathish Sankar, Pitchaipillai Sankar Ganesh, Suganya Subramaniam, Esaki M Shankar, Monal Yuwanati, Rajakumar Govindasamy, Muthu Thiruvengadam
    Microbial Pathogenesis.2023; 174: 105940.     CrossRef
  • Development of Gallium(III) as an Antimicrobial Drug Targeting Pathophysiologic Iron Metabolism of Human Pathogens
    Zachary W. Scott, Seoung-ryoung Choi, Bradley E. Britigan, Prabagaran Narayanasamy
    ACS Infectious Diseases.2023; 9(4): 716.     CrossRef
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    Tyler J. Durkin, Baishali Barua, Jamie J. Holmstrom, Vasiliki Karanikola, Suchol Savagatrup
    Langmuir.2023; 39(36): 12845.     CrossRef
  • Characterisation of Ferritin–Lymphocyte Ratio in COVID-19
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    Biomedicines.2023; 11(10): 2819.     CrossRef
  • Pseudomonas aeruginosa responds to altered membrane phospholipid composition by adjusting the production of two-component systems, proteases and iron uptake proteins
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    Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids.2023; 1868(6): 159317.     CrossRef
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    Pankaj Bhatt, Kalpana Bhatt, Yaohua Huang, Jiayi Li, Siyi Wu, Shaohua Chen
    Critical Reviews in Biotechnology.2023; 43(8): 1129.     CrossRef
  • Pathogenesis of the Pseudomonas aeruginosa Biofilm: A Review
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  • Molecular Technology for the Detection of Pyoviridine Gene in Pseudomonas aeruginosa Isolated from Burn Cases
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  • Heme cross-feeding can augment Staphylococcus aureus and Enterococcus faecalis dual species biofilms
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    The ISME Journal.2022; 16(8): 2015.     CrossRef
  • Human lactoferrin from breast milk: characterization by HPLC and its in vitro antibiofilm performance
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    Journal of Food Science and Technology.2022; 59(12): 4907.     CrossRef
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  • Zeolite-supported biofilms as inoculants for the treatment of MCPA-polluted soil and sand by bioaugmentation: A microcosm study
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  • Overexpression of pdeR promotes biofilm formation of Paracoccus denitrificans by promoting ATP production and iron acquisition
    Na Wang, Jie Gao, Shujie Xiao, Guoqiang Zhuang
    Frontiers in Microbiology.2022;[Epub]     CrossRef
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    Microorganisms.2022; 10(11): 2234.     CrossRef
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    Yuqin Huang, Wenguo Wang, Qiang Huang, Zhengyan Wang, Zhuanzhuan Xu, Chaochao Tu, Dongli Wan, Miaobo He, Xiaoyi Yang, Huaqiang Xu, Hanqin Wang, Ying Zhao, Mingli Tu, Quan Zhou
    Frontiers in Pharmacology.2022;[Epub]     CrossRef
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    International Journal of Molecular Sciences.2021; 22(6): 3128.     CrossRef
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    Journal of Applied Microbiology.2021; 130(1): 265.     CrossRef
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    Journal of Applied Microbiology.2021; 131(3): 1487.     CrossRef
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Journal Articles
Taxonomic description and draft genome of Pseudomonas sediminis sp. nov., isolated from the rhizospheric sediment of Phragmites karka
Pratiksha Behera , Madhusmita Mahapatra , Arman Seuylemezian , Parag Vaishampayan , V. Venkata Ramana , Neetha Joseph , Amaraja Joshi , Yogesh Shouche , Mrutyunjay Suar , Ajit K. Pattnaik , Gurdeep Rastogi
J. Microbiol. 2018;56(7):458-466.   Published online June 14, 2018
DOI: https://doi.org/10.1007/s12275-018-7549-x
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AbstractAbstract
The taxonomic position of a Gram-stain-negative, rod-shaped bacterial strain, designated PI11T , isolated from the rhizospheric sediment of Phragmites karka was characterized using a polyphasic approach. Strain PI11T could grow optimally at 1.0% NaCl concentration with pH 7.0 at 30°C and was positive for oxidase and catalase but negative for hydrolysis of starch, casein, and esculin ferric citrate. Phylogenetic analysis of 16S rRNA gene sequences indicated that the strain PI11T belonged to the genus Pseudomonas sharing the highest sequence similarities with Pseudomonas indoloxydans JCM 14246T (99.72%), followed by, Pseudomonas oleovorans subsp. oleovorans DSM 1045T (99.29%), Pseudomonas toyotomiensis JCM 15604T (99.15%), Pseudomonas chengduensis DSM 26382T (99.08%), Pseudomonas oleovorans subsp. lubricantis DSM 21016T (99.08%), and Pseudomonas alcaliphila JCM 10630T (99.01%). Experimental DNA-DNA relatedness between strain PI11T and P. indoloxydans JCM 14246T was 49.4%. The draft genome of strain PI11T consisted of 4,884,839 bp. Average nucleotide identity between the genome of strain PI11T and other closely related type strains ranged between 77.25–90.74%. The polar lipid pattern comprised of phosphatidylglycerol, diphosphatidylglycerol, and phosphatidylcholine. The major (> 10%) cellular fatty acids were C18:1 ω6c/ω7c, C16:1 ω6c/ω7c, and C16:0. The DNA G + C content of strain PI11T was 62.4 mol%. Based on the results of polyphasic analysis, strain PI11T was delineated from other closely related type strains. It is proposed that strain PI11T represents a novel species of the genus Pseudomonas, for which the name Pseudomonas sediminis sp. nov. is proposed. The type strain is PI11T (= KCTC 42576T = DSMZ 100245T).

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  • Plant growth-promoting characteristics of halotolerant endophytic bacteria isolated from Sporobolus specatus (Vahr) Kunth and Cyperus laevigatus L. of Ethiopian rift valley lakes
    Solomon Enquahone, Guido van Marle, Addis Simachew
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Haloferax litoreum sp. nov., Haloferax marinisediminis sp. nov., and Haloferax marinum sp. nov., low salt-tolerant haloarchaea isolated from seawater and sediment
    Eui-Sang Cho, In-Tae Cha, Seong Woon Roh, Myung-Ji Seo
    Antonie van Leeuwenhoek.2021; 114(12): 2065.     CrossRef
  • Pseudomonas carbonaria sp. nov., isolated from charcoal
    Peter Kämpfer, S. P. Glaeser, John A. McInroy, Dominique Clermont, Alexis Criscuolo, Hans-Jürgen Busse
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Haloplanus rubicundus sp. nov., an extremely halophilic archaeon isolated from solar salt
    Yeon Bee Kim, Joon Yong Kim, Hye Seon Song, Se Hee Lee, Na-Ri Shin, Jin-Woo Bae, Jinjong Myoung, Ki-Eun Lee, In-Tae Cha, Jin-Kyu Rhee, Seong Woon Roh
    Systematic and Applied Microbiology.2020; 43(3): 126085.     CrossRef
  • Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi
    Young Joon Oh, Joon Yong Kim, Hyo Kyeong Park, Ja-Young Jang, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
    Journal of Microbiology.2019; 57(11): 997.     CrossRef
Flavihumibacter profundi sp. nov., isolated from eutrophic freshwater sediment
Ting-Ting Ren , Chun-Zhi Jin , Feng-Jie Jin , Taihua Li , Chang-Jin Kim , Hee-Mock Oh , Hyung-Gwan Lee , Long Jin
J. Microbiol. 2018;56(7):467-471.   Published online June 28, 2018
DOI: https://doi.org/10.1007/s12275-018-7567-8
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AbstractAbstract
A Gram-stain-positive, aerobic, non-motile, non-spore-forming, and rod-shaped bacterium, designated strain CHu64- 6-1T, was isolated from a 67-cm-long sediment core collected from the Daechung Reservoir at a water depth of 17-m in Daejeon, Republic of Korea. Comparative 16S rRNA gene sequence studies placed the new isolate in the class Sphingobacteriia, and the isolate is notably most closely related to Flavihumibacter sediminis CJ663T (98.1% similarity), Flavihumibacter solisilvae 3-3T (97.8%), Flavihumibacter petaseus T41T (97.5%), Flavihumibacter cheonanensis WS16T (97.4%), and Flavihumibacter stibioxidans YS-17T (97.2%). The cells of strain CHu64-6-1T formed yellow colonies on R2A agar and contained MK-7 as the only menaquinone, phosphatidylethanolamine, an unidentified phospholipid, and two unidentified aminolipids as the major polar lipids, and C15:0 iso, C17:0 iso 3-OH, C15:1 iso G, and C16:1 ω5c as the major fatty acids (> 5%). The DNA G + C content of the genome was determined to be 46.5 mol%. The DNA-DNA hybridization values of strain CHu64-6-1T with F. sediminis CJ663T, F. solisilvae 3-3T, F. petaseus T41T, F. cheonanensis WS16T, and F. stibioxidans YS-17T were 12.4–33.2%. Based on the combined genotypic and phenotypic data, we propose that strain CHu64-6-1T represents a novel species of the genus Flavihumibacter, for which the name Flavihumibacter profundi sp. nov. is proposed. The type strain is CHu64-6-1T (= KCTC 62290T = CCTCC AB 2018060T).

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  • Flavihumibacter fluminis sp. nov., a novel thermotolerant bacterium isolated from river silt
    Bai Guo, Weidong Mu, Sidi Mao, Shucheng Li, Shaomei Yang, Aijv Liu, Shuzhen Wei, Xiuyun Li, Feng Sang, Hongkuan Deng, Yuling Dong, Hongliang Liu, Zhiwei Chen
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Lacibacter sediminis sp. nov., isolated from contaminated freshwater sediment
    Ye Zhuo, Chun-Zhi Jin, Feng-Jie Jin, Hee-Mock Oh, Hyung-Gwan Lee, Taihua Li, Long Jin
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Flavihumibacter fluminis sp. nov. and Flavihumibacter rivuli sp. nov., isolated from a freshwater stream
    Miri S. Park, Hyeonuk Sa, Ilnam Kang, Jang-Cheon Cho
    Journal of Microbiology.2022; 60(8): 806.     CrossRef
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    Yiran Hou, Bing Li, Gongcheng Feng, Chengfeng Zhang, Jie He, Haidong Li, Jian Zhu
    Science of The Total Environment.2021; 759: 143534.     CrossRef
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    Chun-Zhi Jin, Long Jin, Dong Hyo Kang, Min-Jiao Liu, Jong Min Lee, Dong-Jin Park, Chang-Jin Kim
    Antonie van Leeuwenhoek.2021; 114(6): 741.     CrossRef
  • Reactivation of Frozen Stored Microalgal-Bacterial Granular Sludge under Aeration and Non-Aeration Conditions
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    Water.2021; 13(14): 1974.     CrossRef
  • Positive effects of zeolite powder on aerobic granulation: Nitrogen and phosphorus removal and insights into the interaction mechanisms
    Huihua Lin, Rui Ma, Junhao Lin, Shichang Sun, Xiangli Liu, Peixin Zhang
    Environmental Research.2020; 191: 110098.     CrossRef
  • Caulobacter soli sp. nov., isolated from soil sampled at Jiri Mountain, Republic of Korea
    Yuanyuan Yang, Chun-Zhi Jin, Feng-Jie Jin, Taihua Li, Jong-Min Lee, Chang-Jin Kim, Hyung-Gwan Lee, Long Jin
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4158.     CrossRef
  • Lysobacter profundi sp. nov., isolated from freshwater sediment and reclassification of Lysobacter panaciterrae as Luteimonas panaciterrae comb. nov.
    Chun-Zhi Jin, Xiuli Song, Yun Ju Sung, Feng-Jie Jin, Taihua Li, Hee-Mock Oh, Hyung-Gwan Lee, Long Jin
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(6): 3878.     CrossRef
  • Lacisediminihabitans profunda gen. nov., sp. nov., a member of the family Microbacteriaceae isolated from freshwater sediment
    Ye Zhuo, Chun-Zhi Jin, Feng-Jie Jin, Taihua Li, Dong Hyo Kang, Hee-Mock Oh, Hyung-Gwan Lee, Long Jin
    Antonie van Leeuwenhoek.2020; 113(3): 365.     CrossRef
  • List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
Bacillus ferrooxidans sp. nov., an iron(II)-oxidizing bacterium isolated from paddy soil
Guo-Wei Zhou , Xiao-Ru Yang , Jian-Qiang Su , Bang-Xiao Zheng , Yong-Guan Zhu
J. Microbiol. 2018;56(7):472-477.   Published online June 14, 2018
DOI: https://doi.org/10.1007/s12275-018-7543-3
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AbstractAbstract
An endospore-forming bacterium, designated YT-3T, was isolated from a paddy soil in Yingtan, Jiangxi, China. Cells of strain YT-3T were Gram-positive, rod-shaped, facultative anaerobic, catalase, and oxidase positive. The optimum growth temperature and pH were 30°C (ranged from 15 to 50°C) and 6.5–7.0 (ranged from 3 to 11), respectively. Analysis of the 16S rRNA gene sequence showed that strain YT-3T was affiliated to the genus Bacillus and displayed the highest similarity to that of Bacillus drentensis JCM 21707T (98.3%), followed by B. ginsengisoli JCM 17335T (97.8%) and B. fumarioli JCM 21708T (97.0%). The similarity of rpoB gene sequence between strain YT-3T and B. drentensis JCM 21707T, B. ginsengisoli JCM 17335T and B. fumarioli JCM 21708T was 80.4%, 81.5%, and 82.1%, respectively. The genomic DNA G + C content was 44.9 mol%. The predominant respiratory quinone was Menaquinone-7, and meso-diaminopimelic acid was present in the peptidoglycan layer of cell wall. The major fatty acids were C15:0 anteiso (36.2%), C14:0 iso (19.6%), C15:0 iso (17.4%), and C16:0 iso (9.8%). The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phospholipids, and ammoniac phospholipids. The DNA-DNA hybridization values between isolate YT-3T and B. drentensis (JCM 21707T), B. ginsengisoli (JCM 17335T), and B. fumarioli (JCM 21708T) were 36.3%, 30.3%, and 25.3%, respectively. On the basis of physiological, genetic and biochemical data, strain YT-3T represented a novel species of the genus Bacillus, for which the name Bacillus ferrooxidans sp. nov was proposed. The type strain is YT-3T (= KCTC 33875T = CCTCC AB 2017049T).

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    Journal of Hazardous Materials.2022; 425: 127774.     CrossRef
  • Underestimation about the Contribution of Nitrate Reducers to Iron Cycling Indicated by Enterobacter Strain
    Ming-Jun Li, Meng-Yun Wei, Xiao-Ting Fan, Guo-Wei Zhou
    Molecules.2022; 27(17): 5581.     CrossRef
  • Fe toxicity in plants: Impacts and remediation
    Noreen Zahra, Muhammad Bilal Hafeez, Kanval Shaukat, Abdul Wahid, Mirza Hasanuzzaman
    Physiologia Plantarum.2021;[Epub]     CrossRef
  • Metabolic Inactivity and Re-awakening of a Nitrate Reduction Dependent Iron(II)-Oxidizing Bacterium Bacillus ferrooxidans
    Guo-Wei Zhou, Xiao-Ru Yang, Regin Rønn, Jian-Qiang Su, Li Cui, Bang-Xiao Zheng, Yong-Guan Zhu
    Frontiers in Microbiology.2019;[Epub]     CrossRef
Pedobacter aquicola sp. nov., isolated from freshwater
Yochan Joung , Hye-jin Jang , Miri Park , Jaeho Song , Jang-Cheon Cho
J. Microbiol. 2018;56(7):478-484.   Published online June 14, 2018
DOI: https://doi.org/10.1007/s12275-018-7499-3
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AbstractAbstract
A non-motile, pink-pigmented bacterial strain designated IMCC25679T, was isolated from freshwater Lake Chungju of Korea. Phylogenetic trees based on 16S rRNA gene sequences showed that the strain IMCC25679T formed a lineage within the genus Pedobacter. The strain IMCC25679T was closely related to Pedobacter daechungensis Dae 13T (96.4% sequence similarity), Pedobacter rivuli HME8457T (95.3%) and Pedobacter lentus DS-40T (94.3%). The major fatty acids of IMCC- 25679T were iso-C15:0, iso-C16:0 and summed feature 3 (comprising C16:1 ω6c and/or C16:1 ω7c). The major respiratory quinone was MK-7. The major polar lipids were phosphatidylethanolamine (PE), an unidentified sphingolipid (SL), an unidentified aminolipid (AL) and three unidentified polar lipids (PL). The DNA G + C content of IMCC25679T was 32.2 mol%. Based on the evidence presented in this study, the strain IMCC25679T represents a novel species within the genus Pedobacter, with the proposed name Pedobacter aquicola, sp. nov. The type strain is IMCC25679T (= KACC 19486T = NBRC113131T).

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    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
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    Cancer Medicine.2023; 12(6): 7127.     CrossRef
  • Pedobacter aquae sp. nov., a multi-drug resistant bacterium isolated from fresh water
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    Hong Sik Im, Yochan Joung, Sang-Seob Lee
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
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    Cya-Yong Cho, So-Ra Han, Tae-Jin Oh
    Current Microbiology.2021; 78(3): 944.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George Garrity
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4043.     CrossRef
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    Xiao-yan He, Na Li, Xiu-lan Chen, Yu-zhong Zhang, Xi-ying Zhang, Xiao-yan Song
    Antonie van Leeuwenhoek.2020; 113(3): 357.     CrossRef
  • Leeia aquatica sp. nov., isolated from freshwater
    Jaeho Song, Yochan Joung, Shan-Hui Li, Juchan Hwang, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(11): 5848.     CrossRef
  • Sphingobacterium chungjuense sp. nov., isolated from a freshwater lake
    Jaeho Song, Yochan Joung, Shan-Hui Li, Juchan Hwang, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(12): 6126.     CrossRef
  • Rhodoferax lacus sp. nov., isolated from a large freshwater lake
    Miri Park, Jaeho Song, Gi Gyun Nam, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(10): 3135.     CrossRef
Proposal of three novel species of soil bacteria, Variovorax ureilyticus, Variovorax rhizosphaerae, and Variovorax robiniae, in the family Comamonadaceae
Tuan Manh Nguyen , Ngoc Hoang Trinh , Jaisoo Kim
J. Microbiol. 2018;56(7):485-492.   Published online June 14, 2018
DOI: https://doi.org/10.1007/s12275-018-8025-3
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AbstractAbstract
Three novel bacterial strains (UCM-2T, UCM-G28T, and UCM-G35T) were obtained while isolating soil bacteria for the development of antibiotics. Cells of these strains were Gram-negative, non-spore forming, motile by means of a single flagellum, and rod shaped. In all strains, the predominant isoprenoid quinone was ubiquinone-8 (Q-8). Cells contained C16:0, summed feature 3 (C16:1 ω7c and/or C16:1 ω6c), summed feature 8 (C18:1 ω7c and/or C18:1 ω6c), and C17:0 cyclo as the major fatty acids, and C10:0 3-OH as the major hydroxy fatty acid. The polar lipid profiles of the three novel strains were dominated by diphosphatidylglycerol, phosphatidylethanolamine, and phosphatidylglycerol. The genomic DNA G + C contents of strains UCM-2T, UCM-G28T, and UCMG35T were 67.5, 65.9, and 66.4 mol%, respectively. Phylogenetic analyses based on 16S rRNA sequences showed that strain UCM-2T was most closely related to Variovorax soli NBRC 106424T, whereas strains UCM-G28T and UCM-G35T were most similar to Variovorax ginsengisoli Gsoil 3165T. Values indicating DNA-DNA hybridization between the novel isolates and closely related species in the genus Variovorax were lower than the 70% cut-off point. These phenotypic, chemotaxonomic, and phylogenetic data indicate that the three isolates should be classified as new members of the genus Variovorax, for which the names Variovorax ureilyticus sp. nov., Variovorax rhizosphaerae sp. nov., and Variovorax robiniae sp. nov. are proposed. The type strains are UCM-2T (= KACC 18899T = NBRC 112306T), UCMG28T (= KACC 18900T = NBRC 112307T), and UCM-G35T (= KACC 18901T = NBRC 112308T), respectively.

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  • Variovorax terrae sp. nov. Isolated from Soil with Potential Antioxidant Activity
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  • Variovorax beijingensis sp. nov., a novel plant-associated bacterial species with plant growth-promoting potential isolated from different geographic regions of Beijing, China
    Jun-lian Gao, Yu-chen Sun, Jing Xue, Pengbo Sun, Hui Yan, Mohammad Sayyar Khan, Li-wei Wang, Xiuhai Zhang, Jian-guang Sun
    Systematic and Applied Microbiology.2020; 43(6): 126135.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
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Halomonas tibetensis sp. nov., isolated from saline lakes on Tibetan Plateau
Hui-bin Lu , Peng Xing , Lei Zhai , Dorji Phurbu , Qian Tang , Qing-long Wu
J. Microbiol. 2018;56(7):493-499.   Published online June 14, 2018
DOI: https://doi.org/10.1007/s12275-018-8076-5
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AbstractAbstract
Strains pyc13T and ZGT13 were isolated from Lake Pengyan and Lake Zigetang on Tibetan Plateau, respectively. Both strains were Gram-negative, catalase- and oxidase-positive, aerobic, rod-shaped, nonmotile, and nonflagellated bacteria. Phylogenetic analysis based on 16S rRNA gene sequences showed that strains pyc13T and ZGT13 belong to the genus Halomonas, with Halomonas alkalicola 56-L4-10aEnT as their closest neighbor, showing 97.4% 16S rRNA gene sequence similarity. The predominant respiratory quinone of both strains was Q-9, with Q-8 as a minor component. The major fatty acids of both strains were C18:1 ω6c/C18:1 ω7c, C16:1 ω6c/C16:1 ω7c, C16:0, and C12:0 3OH. The polar lipids of both strains consisted of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, glycolipid, phospholipids of unknown structure containing glucosamine, and unidentified phospholipids. The DNA G + C content of pyc13T and ZGT13 were 62.6 and 63.4 mol%, respectively. The DNA-DNA hybridization values of strain pyc13T were 34, 41, 61, 35, and 35% with the reference strains H. alkalicola 56-L4-10aEnT, H. sediminicola CPS11T, H. mongoliensis Z-7009T, H. ventosae Al12T, and H. fontilapidosi 5CRT, respectively. Phenotypic, biochemical, genotypic, and DNA-DNA hybridization data showed that strains pyc13T and ZGT13 represent a new species within the genus Halomonas, for which the name H. tibetensis sp. nov. is proposed. The type strain is pyc13T (= CGMCC 1.15949T = KCTC 52660T).

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    Fermentation.2023; 9(8): 719.     CrossRef
  • Halomonas profundi sp. nov., isolated from deep-sea sediment of the Mariana Trench
    Fan Wang, Jin-Jian Wan, Xi-Ying Zhang, Yu Xin, Mei-Ling Sun, Peng Wang, Wei-Peng Zhang, Ji-Wei Tian, Yu-Zhong Zhang, Chun-Yang Li, Hui-Hui Fu
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Halomonas jincaotanensis sp. nov., isolated from the Pamir Plateau degrading polycyclic aromatic hydrocarbon
    Xuying Bu, Zhanfeng Xia, Zhanwen Liu, Min Ren, Chuanxing Wan, Lili Zhang
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Halomonas rituensis sp. nov. and Halomonas zhuhanensis sp. nov., isolated from natural salt marsh sediment on the Tibetan Plateau
    Peixin Gao, Huibin Lu, Peng Xing, Qinglong L. Wu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(10): 5217.     CrossRef
  • Halomonas montanilacus sp. nov., isolated from hypersaline Lake Pengyanco on the Tibetan Plateau
    Huibin Lu, Peng Xing, Lei Zhai, Huabing Li, Qinglong Wu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(4): 2859.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
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Hymenobacter jeollabukensis sp. nov., isolated from soil
Leonid N. Ten , Young Eun Han , Kyeung Il Park , In-Kyu Kang , Jeung-Sul Han , Hee-Young Jung
J. Microbiol. 2018;56(7):500-506.   Published online June 28, 2018
DOI: https://doi.org/10.1007/s12275-018-8085-4
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AbstractAbstract
A Gram-stain-negative, non-motile, rod-shaped, aerobic bacterial strain, designated 1-3-3-8T, was isolated from soil and characterized taxonomically using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain 1-3-3-8T belongs to the family Cytophagaceae of phylum Bacteroidetes and is most closely related to Hymenobacter paludis KBP-30T (96.8% similarity), Hymenobacter ocellatus Myx2105T (96.8%), Hymenobacter coalescens WW84T (95.6%), and Hymenobacter deserti ZLB-3T (95.4%). The G + C content of the genomic DNA of strain 1-3-3-8T was 63.6 mol%. The isolate contained C15:0 iso (28.4%), summed feature 4 (C17:1 anteiso B/C17:1 iso I; 18.9%), and C15:0 anteiso (17.6%) as major fatty acids, MK-7 as the predominant respiratory quinone, and sym-homospermidine as the predominant polyamine. The major polar lipids were phosphatidylethanolamine and an unidentified lipid. The phenotypic and chemotaxonomic data supported the affiliation of strain 1-3-3-8T with the genus Hymenobacter. The DNA-DNA relatedness between strain 1-3-3-8T and H. paludis KCTC 32237T and H. ocellatus DSM 11117T were 24.5 and 27.4% respectively, clearly showing that the isolate is not related to them at the species level. Overall, the novel strain could be differentiated from its phylogenetic neighbors on the basis of several phenotypic, genotypic, and chemotaxonomic features. Therefore, strain 1-3-3-8T represents a novel species of the genus Hymenobacter, for which the name Hymenobacter jeollabukensis sp. nov. has been proposed. The type strain is 1-3-3-8T (= KCTC 52741T = JCM 32192T).

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Temporal and spatial impact of Spartina alterniflora invasion on methanogens community in Chongming Island, China
Xue Ping Chen , Jing Sun , Yi Wang , Heng Yang Zhang , Chi Quan He , Xiao Yan Liu , Nai Shun Bu , Xi-En Long
J. Microbiol. 2018;56(7):507-515.   Published online June 14, 2018
DOI: https://doi.org/10.1007/s12275-018-8062-y
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AbstractAbstract
Methane production by methanogens in wetland is recognized as a significant contributor to global warming. Spartina alterniflora (S. alterniflora), which is an invasion plant in China’s wetland, was reported to have enormous effects on methane production. But studies on shifts in the methanogen community in response to S. alterniflora invasion at temporal and spatial scales in the initial invasion years are rare. Sediments derived from the invasive species S. alterniflora and the native species Phragmites australis (P. australis) in pairwise sites and an invasion chronosequence patch (4 years) were analyzed to investigate the abundance and community structure of methanogens using quantitative real-time PCR (qPCR) and Denaturing gradient gel electrophoresis (DGGE) cloning of the methyl-coenzyme M reductase A (mcrA) gene. For the pairwise sites, the abundance of methanogens in S. alterniflora soils was lower than that of P. australis soils. For the chronosequence patch, the abundance and diversity of methanogens was highest in the soil subjected to two years invasion, in which we detected some rare groups including Methanocellales and Methanococcales. These results indicated a priming effect at the initial invasion stages of S. alterniflora for microorganisms in the soil, which was also supported by the diverse root exudates. The shifts of methanogen communities after S. alterniflora invasion were due to changes in pH, salinity and sulfate. The results indicate that root exudates from S. alterniflora have a priming effect on methanogens in the initial years after invasion, and the predominate methylotrophic groups (Methanosarcinales) may adapt to the availability of diverse substrates and reflects the potential for high methane production after invasion by S. alterniflora.

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    Andrea Fuchs, Ian C. Davidson, J. Patrick Megonigal, John L. Devaney, Christina Simkanin, Genevieve L. Noyce, Meng Lu, Grace M. Cott
    PLANTS, PEOPLE, PLANET.2025; 7(1): 62.     CrossRef
  • Predictions of Spartina alterniflora leaf functional traits based on hyperspectral data and machine learning models
    Wei Li, Xueyan Zuo, Zhijun Liu, Leichao Nie, Huazhe Li, Junjie Wang, Zhiguo Dou, Yang Cai, Xiajie Zhai, Lijuan Cui
    European Journal of Remote Sensing.2024;[Epub]     CrossRef
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    Hailey Erb, Ashley Keiser, Kristen M DeAngelis
    Sustainable Microbiology.2024;[Epub]     CrossRef
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    Soil Biology and Biochemistry.2023; 178: 108931.     CrossRef
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    Jian Li, Zhanrui Leng, Taitiya Kenneth Yuguda, Lili Wei, Jiaojiao Xia, Chongyu Zhuo, Ziying Nie, Daolin Du
    Frontiers in Marine Science.2023;[Epub]     CrossRef
  • Spartina alterniflora Invaded Coastal Wetlands by Raising Soil Sulfur Contents: A Meta-Analysis
    Zhenzhen Zhao, Liyu Cheng, Chiquan He, Feifei Wang, Jialin Liu, Yuanhang Li, Xueping Chen, Xiaoyan Liu, Gaoming Lv, Daoyuan Wang
    Water.2022; 14(10): 1633.     CrossRef
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Antifungal activity of 3-acetylbenzamide produced by actinomycete WA23-4-4 from the intestinal tract of Periplaneta americana
Xia Fang , Juan Shen , Jie Wang , Zhi-li Chen , Pei-bin lin , Zhi-yu Chen , Lin-yan Liu , Huan-xiong Zeng , Xiao-bao Jin
J. Microbiol. 2018;56(7):516-523.   Published online June 28, 2018
DOI: https://doi.org/10.1007/s12275-018-7510-z
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AbstractAbstract
Actinomycetes are well-known for producing numerous bioactive secondary metabolites. In this study, primary screening by antifungal activity assay found one actinomycete strain WA23-4-4 isolated from the intestinal tract of Periplaneta americana that exhibited broad spectrum antifungal activity. 16S rDNA gene analysis of strain WA23-4-4 revealed close similarity to Streptomyces nogalater (AB045886) with 86.6% sequence similarity. Strain WA23-4-4 was considered as a novel Streptomyces and the 16s rDNA sequence has been submitted to GenBank (accession no. KX291006). The maximum antifungal activity of WA23-4-4 was achieved when culture conditions were optimized to pH 8.0, with 12% inoculum concentration and 210 ml ISP2 medium, which remained stable between the 5th and the 9th day. 3-Acetyl benzoyl amide was isolated by ethyl acetate extraction of WA23- 4-4 fermentation broth, and its molecular formula was determined as C9H9NO2 based on MS, IR, 1H, and 13C NMR analyses. The compound showed significant antifungal activity against Candida albicans ATCC 10231 (MIC: 31.25 μg/ml) and Aspergillus niger ATCC 16404 (MIC: 31.25 μg/ml). However, the compound had higher MIC values against Trichophyton rubrum ATCC 60836 (MIC: 500 μg/ml) and Aspergillus fumigatus ATCC 96918 (MIC: 1,000 μg/ml). SEM analysis showed damage to the cell membrane of Candida albicans ATCC 10231 and to the mycelium of Aspergillus niger ATCC 16404 after being treatment with 3-acetyl benzoyl amide. In conclusion, this is the first time that 3-acetyl benzoyl amide has been identified from an actinomycete and this compound exhibited antifungal activity against Candida albicans ATCC 10231 and Aspergillus niger ATCC 16404.

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  • Anti-Klebsiella pneumoniae activity of secondary metabolism of Achromobacter from the intestine of Periplaneta americana
    Yan Ma, Ping Guo, Xueqin Chen, Minhua Xu, Wenbin Liu, Xiaobao Jin
    BMC Microbiology.2023;[Epub]     CrossRef
  • Stereochemical Control of Secondary Benzamide‐based BODIPY Emitters
    Sara M. A. Waly, Andrew C. Benniston, Joshua K. G. Karlsson, Casey M. Dixon, Corinne Wills, Paul G. Waddell, Anthony Harriman
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  • Antifungal activity of compounds from Gordonia sp. WA8-44 isolated from the gut of Periplaneta americana and molecular docking studies
    Wenbin Liu, Ertong Li, Lingyan Liu, Fangyuan Tian, Xiongming Luo, Yanqu Cai, Jie Wang, Xiaobao Jin
    Heliyon.2023; 9(7): e17777.     CrossRef
  • A minireview of the medicinal and edible insects from the traditional Chinese medicine (TCM)
    Enming Zhang, Xin Ji, Fang Ouyang, Yang Lei, Shun Deng, Haibo Rong, Xuangen Deng, Hai Shen
    Frontiers in Pharmacology.2023;[Epub]     CrossRef
  • Insects as sources of food and bioproducts: a review from Colombia
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    The Journal of Basic and Applied Zoology.2022;[Epub]     CrossRef
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    Sustainable Chemistry and Pharmacy.2022; 27: 100650.     CrossRef
  • A cytotoxic triterpenoid from a Periplaneta americana-derived, Gordonia hongkongensis WA12-1-1
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