Journal Articles
- Vaccine Development for Severe Fever with Thrombocytopenia Syndrome Virus in Dogs
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Seok-Chan Park, Da-Eun Jeong, Sun-Woo Han, Joon-Seok Chae, Joo-Yong Lee, Hyun-Sook Kim, Bumseok Kim, Jun-Gu Kang
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J. Microbiol. 2024;62(4):327-335. Published online April 18, 2024
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DOI: https://doi.org/10.1007/s12275-024-00119-y
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Severe fever with thrombocytopenia syndrome (SFTS) is a life-threatening viral zoonosis. The causative agent of this disease is the Dabie bandavirus, which is usually known as the SFTS virus (SFTSV). Although the role of vertebrates in SFTSV transmission to humans remains uncertain, some reports have suggested that dogs could potentially transmit SFTSV to humans. Consequently, preventive measures against SFTSV in dogs are urgently needed. In the present study, dogs were immunized three times at two-week intervals with formaldehyde-inactivated SFTSV with two types of adjuvants. SFTSV (KCD46) was injected into all dogs two weeks after the final immunization. Control dogs showed viremia from 2 to 4 days post infection (dpi), and displayed white pulp atrophy in the spleen, along with a high level of terminal deoxynucleotidyl transferase-mediated dUTP nick-end labelling assay (TUNEL) positive area. However, the inactivated SFTSV vaccine groups exhibited rare pathological changes and significantly reduced TUNEL positive areas in the spleen. Furthermore, SFTSV viral loads were not detected at any of the tested dpi. Our results indicate that both adjuvants can be safely used in combination with an inactivated SFTSV formulation to induce strong neutralizing antibodies. Inactivated SFTSV vaccines effectively prevent pathogenicity and viremia in dogs infected with SFTSV. In conclusion, our study highlighted the potential of inactivated SFTSV vaccination for SFTSV control in dogs.
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- The immunogenicity and protection efficacy evaluation of mRNA vaccine candidate for severe fever with thrombocytopenia syndrome in mice
Da-Eun Jeong, Jack Yoon, Baek Kim, Jun-Gu Kang, Abdallah M. Samy
PLOS Neglected Tropical Diseases.2025; 19(4): e0012999. CrossRef - Efficient and modular reverse genetics system for rapid generation of recombinant severe acute respiratory syndrome coronavirus 2
Sojung Bae, Jinjong Myoung
Journal of Microbiology.2025; 63(7): e2504015. CrossRef - Current status of severe fever with thrombocytopenia syndrome in China (Review)
Hao Sun, Quanman Hu, Saiwei Lu, Yanyan Yang, Li Zhang, Jinzhao Long, Yuefei Jin, Haiyan Yang, Shuaiyin Chen, Guangcai Duan
International Journal of Molecular Medicine.2025; 56(5): 1. CrossRef - Domain-Specific Impacts of Spike Protein Mutations on Infectivity and Antibody Escape in SARS-CoV-2 Omicron BA.1
Tae-Hun Kim, Sojung Bae, Jinjong Myoung
Journal of Microbiology and Biotechnology.2025;[Epub] CrossRef
- Transcription Factors Tec1 and Tec2 Play Key Roles in the Hyphal Growth and Virulence of Mucor lusitanicus Through Increased Mitochondrial Oxidative Metabolism
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Viridiana Alejandre-Castañeda , J. Alberto Patiño-Medina , Marco I. Valle-Maldonado , Alexis García , Rafael Ortiz-Alvarado , León F. Ruíz-Herrera , Karla Viridiana Castro-Cerritos , Joel Ramírez-Emiliano , Martha I. Ramírez-Díaz , Victoriano Garre , Soo Chan Lee , Víctor Meza-Carmen
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J. Microbiol. 2023;61(12):1043-1062. Published online December 19, 2023
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DOI: https://doi.org/10.1007/s12275-023-00096-8
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Correction in: J. Microbiol 2025;63(4):e2504100
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Mucormycosis is a lethal and difficult-to-treat fungal infection caused by fungi of the order Mucorales. Mucor lusitanicus,
a member of Mucorales, is commonly used as a model to understand disease pathogenesis. However, transcriptional control
of hyphal growth and virulence in Mucorales is poorly understood. This study aimed to investigate the role of Tec proteins,
which belong to the TEA/ATTS transcription factor family, in the hyphal development and virulence of M. lusitanicus. Unlike
in the genome of Ascomycetes and Basidiomycetes, which have a single Tec homologue, in the genome of Mucorales, two
Tec homologues, Tec1 and Tec2, were found, except in that of Phycomyces blakesleeanus, with only one Tec homologue.
tec1 and tec2 overexpression in M. lusitanicus increased mycelial growth, mitochondrial content and activity, expression of
the rhizoferrin synthetase-encoding gene rfs, and virulence in nematodes and wax moth larvae but decreased cAMP levels
and protein kinase A (PKA) activity. Furthermore, tec1- and tec2-overexpressing strains required adequate mitochondrial
metabolism to promote the virulent phenotype. The heterotrimeric G beta subunit 1-encoding gene deletant strain (Δgpb1)
increased cAMP-PKA activity, downregulation of both tec genes, decreased both virulence and hyphal development, but tec1
and tec2 overexpression restored these defects. Overexpression of allele-mutated variants of Tec1(S332A) and Tec2(S168A)
in the putative phosphorylation sites for PKA increased both virulence and hyphal growth of Δgpb1. These findings suggest
that Tec homologues promote mycelial development and virulence by enhancing mitochondrial metabolism and rhizoferrin
accumulation, providing new information for the rational control of the virulent phenotype of M. lusitanicus.
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Citations
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- Heterotrimeric G-gamma 1 (Gpg1) participates with G-beta 1 (Gpb1) in the induction of hyphal growth and virulence via the PKA pathway in Mucor lusitanicus
J. Alberto Patiño-Medina, David Vargas-Tejeda, Nancy Y. Reyes-Mares, Viridiana Alejandre-Castañeda, Cesar J. Torres-Cortes, Carlos Pérez-Arques, Leon F. Ruiz-Herrera, Joel Ramírez-Emiliano, Sandeep Vellanki, Marco I. Valle-Maldonado, Karla Viridiana Castr
Fungal Genetics and Biology.2025; 178: 103974. CrossRef - Future Prospects and Challenges in Mucormycosis Research
Georgios Chamilos, Ulrike Binder, Victoriano Garre
Journal of Fungi.2025; 11(8): 545. CrossRef - Pathogenic Fungal Sensing and Responses to Stressful Host Environments
Jackson R. Rapala, Faith Anderson Davis, Ajay Larkin, Teresa R. O'Meara
Annual Review of Microbiology
.2025; 79(1): 449. CrossRef - A one-pot five component reaction for the synthesis of tetrazol-benzofuran hybrids and their inhibitory activity against Mucor lusitanicus
Cesia M. Aguilar-Morales, Viridiana Alejandre-Castañeda, Claudia Contreras-Celedón, Martha Isela Ramírez-Díaz, Alejandro Islas-Jácome, Victor Meza-Carmen, Luis Chacón-García, Carlos J. Cortés-García
Organic & Biomolecular Chemistry.2024; 22(35): 7240. CrossRef -
Functional characterization of two survival factor 1 genes in
Mucor lusitanicus
Olivér Jáger, Csilla Szebenyi, Tammam Khaliefeh Siliman Abu Saleem, Anna Molnár, Vanda Kovács, Karina Kiss, Mónika Homa, Bernadett Vágó, Sándor Kiss-Vetráb, Mónika Varga, Rita Sinka, Csaba Vágvölgyi, Gábor Nagy, Tamás Papp, Renato Kovacs
Microbiology Spectrum.2024;[Epub] CrossRef
Reviews
- Searching for a Reliable Viral Indicator of Faecal Pollution in Aquatic Environments
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Felana Harilanto Andrianjakarivony , Yvan Bettarel , Christelle Desnues
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J. Microbiol. 2023;61(6):589-602. Published online June 1, 2023
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DOI: https://doi.org/10.1007/s12275-023-00052-6
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The disposal of sewage in significant quantities poses a health hazard to aquatic ecosystems. These effluents can contain
a wide range of pathogens, making faecal contamination a leading source of waterborne diseases around the world. Yet
monitoring bacteria or viruses in aquatic environments is time consuming and expensive. The standard indicators of faecal
pollution all have limitations, including difficulty in determining the source due to lack of host specificity, poor connection
with the presence of non-bacterial pathogens, or low environmental persistence. Innovative monitoring techniques are sorely
needed to provide more accurate and targeted solutions. Viruses are a promising alternative to faecal indicator bacteria for
monitoring, as they are more persistent in ambient water, more abundant in faeces, and are extremely host-specific. Given
the range of viruses found in diverse contexts, it is not easy to find one “ideal” viral indicator of faecal pollution; however,
several are of interest. In parallel, the ongoing development of molecular techniques coupled with metagenomics and bioinformatics
should enable improved ways to detect faecal contamination using viruses. This review examines the evolution
of faecal contamination monitoring with the following aims (i) to identify the characteristics of the main viral indicators of
faecal contamination, including human enteric viruses, bacteriophages, CRESS and plant viruses, (ii) to assess how these
have been used to monitor water pollution in recent years, (iii) to evaluate the reliability of recent detection methods of such
viruses, and (iv) to tentatively determine which viruses may be most effective as markers of faecal pollution.
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- A loop-mediated isothermal amplification assay for the rapid and quantitative tracking of fecal contamination sources in water
Fengshun Xu, Tiancai Liu, Zhiyi Deng, Jincai Li, Yang Zhang, Yongjie Wu, Shijie Xiao, Bixian Mai, Changdong Ke, Renren Wu
Environmental Research.2025; 272: 121162. CrossRef - CrAssphage distribution analysis in an Amazonian river based on metagenomic sequencing data and georeferencing
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Applied and Environmental Microbiology.2025;[Epub] CrossRef - Microbial and Physiochemical Profiling of Zarqa River Supplemented with Treated Wastewater: A High-Resolution PCR Analysis
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Amanda Silva Nunes, Vanessa Moresco, Karen Isabel Sotero Tavares, Célia Regina Monte Barardi, Gislaine Fongaro, Pablo Heleno Sezerino, Maria Elisa Magri
Ecological Engineering.2025; 221: 107769. CrossRef - Review of carbon dot–hydrogel composite material as a future water-environmental regulator
Minghao Jiang, Yong Wang, Jichuan Li, Xing Gao
International Journal of Biological Macromolecules.2024; 269: 131850. CrossRef
- Temperature Matters: Bacterial Response to Temperature Change
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Seongjoon Moon , Soojeong Ham , Juwon Jeong , Heechan Ku , Hyunhee Kim , Changhan Lee
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J. Microbiol. 2023;61(3):343-357. Published online April 3, 2023
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DOI: https://doi.org/10.1007/s12275-023-00031-x
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Temperature is one of the most important factors in all living organisms for survival. Being a unicellular organism, bacterium
requires sensitive sensing and defense mechanisms to tolerate changes in temperature. During a temperature shift,
the structure and composition of various cellular molecules including nucleic acids, proteins, and membranes are affected.
In addition, numerous genes are induced during heat or cold shocks to overcome the cellular stresses, which are known as
heat- and cold-shock proteins. In this review, we describe the cellular phenomena that occur with temperature change and
bacterial responses from a molecular perspective, mainly in Escherichia coli.
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Journal Articles
- A mucin-responsive hybrid two-component system controls Bacteroides thetaiotaomicron colonization and gut homeostasis
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Ju-Hyung Lee , Soo-Jeong Kwon , Ji-Yoon Han , Sang-Hyun Cho , Yong-Joon Cho , Joo-Hong Park
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J. Microbiol. 2022;60(2):215-223. Published online February 1, 2022
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DOI: https://doi.org/10.1007/s12275-022-1649-3
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The mammalian intestinal tract contains trillions of bacteria.
However, the genetic factors that allow gut symbiotic bacteria
to occupy intestinal niches remain poorly understood. Here,
we identified genetic determinants required for Bacteroides
thetaiotaomicron colonization in the gut using transposon
sequencing analysis. Transposon insertion in BT2391, which
encodes a hybrid two-component system, increased the competitive
fitness of B. thetaiotaomicron. The BT2391 mutant
showed a growth advantage in a mucin-dependent manner
and had an increased ability to adhere to mucus-producing
cell lines. The increased competitive advantage of the BT2391
mutant was dependent on the BT2392–2395 locus containing
susCD homologs. Deletion of BT2391 led to changes in
the expression levels of B. thetaiotaomicron genes during gut
colonization. However, colonization of the BT2391 mutant
promoted DSS colitis in low-fiber diet-fed mice. These results
indicate that BT2391 contributes to a sustainable symbiotic
relationship by maintaining a balance between mucosal
colonization and gut homeostasis.
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- Saliva-driven surface-engineered Bacteroides thetaiotaomicron alleviates hypertension
Shuo Xu, Huilong Luo, Lin-Juan Du, Ting Dong, Lu-Jun Zhou, Bo-Yan Chen, Yu-Lin Li, Guo-Cai Tian, Xiao-Qian Meng, Xue-Bing Bai, Hui-Lin Ye, Jun Zhang, Wen-Zhen Lin, Wu-Chang Zhang, Jinyao Liu, Sheng-Zhong Duan
Bioactive Materials.2026; 57: 137. CrossRef - The global RNA-binding protein RbpB is a regulator of polysaccharide utilization in Bacteroides thetaiotaomicron
Ann-Sophie Rüttiger, Daniel Ryan, Luisella Spiga, Vanessa Lamm-Schmidt, Gianluca Prezza, Sarah Reichardt, Madison Langford, Lars Barquist, Franziska Faber, Wenhan Zhu, Alexander J. Westermann
Nature Communications.2025;[Epub] CrossRef - Effect of Lactobacillus plantarum BFS1243 on a female frailty model induced by fecal microbiota transplantation in germ-free mice
Sashuang Dong, Qi Zeng, Weimin He, Wei Cheng, Ling Zhang, Ruimin Zhong, Wen He, Xiang Fang, Hong Wei
Food & Function.2024; 15(8): 3993. CrossRef -
A conserved inhibitory interdomain interaction regulates DNA-binding activities of hybrid two-component systems in
Bacteroides
Rong Gao, Ti Wu, Ann M. Stock, Michael T. Laub
mBio.2024;[Epub] CrossRef - Polysaccharides from Polygonatum cyrtonema Hua prevent depression-like behaviors in mice with chronic unpredictable mild stress through refining gut microbiota-lipopolysaccharide-paraventricular nucleus signal axis
Xinya Wang, Xueqing Wang, Feng Gao, Shaojie Yang, Yilan Zhen, Xuncui Wang, Guoqi Zhu
Heliyon.2024; 10(19): e38554. CrossRef - Metal Messengers: Communication in the Bacterial World through Transition-Metal-Sensing Two-Component Systems
Alexander Paredes, Chioma Iheacho, Aaron T. Smith
Biochemistry.2023; 62(16): 2339. CrossRef - Tang-Ping-San Decoction Remodel Intestinal Flora and Barrier to Ameliorate Type 2 Diabetes Mellitus in Rodent Model
Wen Yin, Si-Qi Zhang, Wen-Lin Pang, Xiao-Jiao Chen, Jing Wen, Jiong Hou, Cui Wang, Li-Yun Song, Zhen-Ming Qiu, Peng-Tao Liang, Jia-Li Yuan, Zhong-Shan Yang, Yao Bian
Diabetes, Metabolic Syndrome and Obesity: Targets and Therapy.2022; Volume 15: 2563. CrossRef
- Assessment of Cre-lox and CRISPR-Cas9 as tools for recycling of multiple-integrated selection markers in Saccharomyces cerevisiae
-
Hye Yun Moon† , Gyu Hun Sim† , Hyeon Jin Kim , Keunpil Kim , Hyun Ah Kang
-
J. Microbiol. 2022;60(1):18-30. Published online December 29, 2021
-
DOI: https://doi.org/10.1007/s12275-022-1580-7
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400
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7
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7
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Abstract
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We evaluated the Cre-lox and CRISPR-Cas9 systems as markerrecycling
tools in Saccharomyces cerevisiae recombinants containing
multiple-integrated expression cassettes. As an initial
trial, we constructed rDNA-nontranscribed spacer- or Ty4-
based multiple integration vectors containing the URA3 marker
flanked by the loxP sequence. Integrants harboring multiple
copies of tHMG1 and NNV-CP expression cassettes were obtained
and subsequently transformed with the Cre plasmid.
However, the simultaneous pop-out of the expression cassettes
along with the URA3 marker hampered the use of Cre-lox as
a marker-recycling tool in multiple integrants. As an alternative,
we constructed a set of CRISPR-Cas9-gRNA vectors containing
gRNA targeted to auxotrophic marker genes. Transformation
of multiple integrants of tHMG1 and NNV-CP
cassettes by the Cas9-gRNA vector in the presence of the URA3
(stop) donor DNA fragments generated the Ura- transformants
retaining multiple copies of the expression cassettes.
CRISPR-Cas9-based inactivation led to the recycling of the
other markers, HIS3, LEU2, and TRP1, without loss of expression
cassettes in the recombinants containing multiple
copies of tHMG1, NNV-CP, and SfBGL1 cassettes, respectively.
Reuse of the same selection marker in marker-inactivated
S. cerevisiae was validated by multiple integrations of the
TrEGL2 cassette into the S. cerevisiae strain expressing SfBGL1.
These results demonstrate that introducing stop codons into
selection marker genes using the CRISPR-Cas9 system with
donor DNA fragments is an efficient strategy for markerrecycling
in multiple integrants. In particular, the continual
reuse of auxotrophic markers would facilitate the construction
of a yeast cell factory containing multiple copies of expression
cassettes without antibiotic resistance genes.
-
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- Multiple metabolic engineering of Saccharomyces cerevisiae for the production of lycopene
Jiaheng Liu, Minxia Song, Xianhao Xu, Yaokang Wu, Yanfeng Liu, Guocheng Du, Jianghua Li, Long Liu, Xueqin Lv
Food Bioengineering.2024; 3(4): 397. CrossRef - Biochemical and Biorefinery Platform for Second-Generation Bioethanol: Fermentative Strategies and Microorganisms
Karla D. González-Gloria, Elia Tomás-Pejó, Lorena Amaya-Delgado, Rosa M. Rodríguez-Jasso, Araceli Loredo-Treviño, Anusuiya Singh, Meenu Hans, Carlos Martín, Sachin Kumar, Héctor A. Ruiz
Fermentation.2024; 10(7): 361. CrossRef - CRISPR/Cas9-based toolkit for rapid marker recycling and combinatorial libraries in Komagataella phaffii
Wei Zhou, Yuanyi Li, Guosong Liu, Weichuang Qin, Dongzhi Wei, Fengqing Wang, Bei Gao
Applied Microbiology and Biotechnology.2024;[Epub] CrossRef - Establishment, optimization, and application of genetic technology in Aspergillus spp.
Jing Gao, Huiqing Liu, Zhenzhen Zhang, Zhihong Liang
Frontiers in Microbiology.2023;[Epub] CrossRef - CRISPR-Cas Technology for Bioengineering Conventional and Non-Conventional Yeasts: Progress and New Challenges
Yuanyuan Xia, Yujie Li, Wei Shen, Haiquan Yang, Xianzhong Chen
International Journal of Molecular Sciences.2023; 24(20): 15310. CrossRef - Genomic and functional features of yeast species in Korean traditional fermented alcoholic beverage and soybean products
Da Min Jeong, Hyeon Jin Kim, Min-Seung Jeon, Su Jin Yoo, Hye Yun Moon, Eun-joo Jeon, Che Ok Jeon, Seong-il Eyun, Hyun Ah Kang
FEMS Yeast Research.2023;[Epub] CrossRef - Multiplex genome editing to construct cellulase engineered Saccharomyces cerevisiae for ethanol production from cellulosic biomass
Yatika Dixit, Preeti Yadav, Arun Kumar Sharma, Poornima Pandey, Arindam Kuila
Renewable and Sustainable Energy Reviews.2023; 187: 113772. CrossRef
- Characterization of a novel phage depolymerase specific to Escherichia coli O157:H7 and biofilm control on abiotic surfaces
-
Do-Won Park , Jong-Hyun Park
-
J. Microbiol. 2021;59(11):1002-1009. Published online October 6, 2021
-
DOI: https://doi.org/10.1007/s12275-021-1413-0
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400
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15
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14
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Abstract
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The increasing prevalence of foodborne diseases caused by
Escherichia coli O157:H7 as well as its ability to form biofilms
poses major threats to public health worldwide. With increasing
concerns about the limitations of current disinfectant treatments,
phage-derived depolymerases may be used as promising
biocontrol agents. Therefore, in this study, the characterization,
purification, and application of a novel phage depolymerase,
Dpo10, specifically targeting the lipopolysaccharides
of E. coli O157, was performed. Dpo10, with a molecular
mass of 98 kDa, was predicted to possess pectate lyase
activity via genome analysis and considered to act as a receptor-
binding protein of the phage. We confirmed that the
purified Dpo10 showed O-polysaccharide degrading activity
only for the E. coli O157 strains by observing its opaque halo.
Dpo10 maintained stable enzymatic activities across a wide
range of temperature conditions under 55°C and mild basic
pH. Notably, Dpo10 did not inhibit bacterial growth but significantly
increased the complement-mediated serum lysis
of E. coli O157 by degrading its O-polysaccharides. Moreover,
Dpo10 inhibited the biofilm formation against E. coli O157
on abiotic polystyrene by 8-fold and stainless steel by 2.56 log
CFU/coupon. This inhibition was visually confirmed via fieldemission
scanning electron microscopy. Therefore, the novel
depolymerase from E. coli siphophage exhibits specific binding
and lytic activities on the lipopolysaccharide of E. coli O157
and may be used as a promising anti-biofilm agent against
the E. coli O157:H7 strain.
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Citations
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- Application of phage-derived enzymes for enhancing food safety
Junhwan Kim, Xinyu Liao, Song Zhang, Tian Ding, Juhee Ahn
Food Research International.2025; 209: 116318. CrossRef - Novel polygalacturonase PG-BG31 prevents biofilm formation and increases antibiotic efficacy against catheter-associated Escherichia coli
Marija Atanaskovic, Andjela Dilparic, Mario Zlatović, Lidija Senerovic
Journal of Biotechnology.2025; 406: 179. CrossRef - Isolation and identification of bacteriophage against Escherichia coli ATCC 25922 and their biofilm Inhibition studies
Lakshminarayanan Sivakumar, Jeya Vignesh John Durai Kumar, Subadarshini Madhavan, K U Mina Parvesh, Santhosh Kumar Arunagiri, Suriyaprakash Rajadesingu, Shobana Sugumar, Narenkumar Jayaraman, Kagithakara Vajravelu Leela, A. Karthik, Tabarak Malik, Parthip
Scientific Reports.2025;[Epub] CrossRef - Bacteriophage as Alternative Methods to Control Pathogens in Food
Nimisha Tehri, Dharun Vijay Puniya, Anil Kumar Puniya
Current Food Science and Technology Reports.2025;[Epub] CrossRef - Lytic bacteriophages as alternative to overcoming antibiotic-resistant biofilms formed by clinically significant bacteria
Abdul-Halim Osman, Samuel Darkwah, Fleischer C. N. Kotey, Adwoa Asante-Poku, Eric S. Donkor
Therapeutic Advances in Infectious Disease.2025;[Epub] CrossRef - Synergistic Disruption of Foodborne Pathogen Biofilms by Oregano Essential Oil and Bacteriophage phiLLS: Atomic Force Microscopy Insights
Ana Karina Kao Godínez, Carlos Regalado-González, Claudia Villicaña, José Basilio Heredia, José Benigno Valdez-Torres, María Muy-Rangel, Monserrat Escamilla-García, Josefina León-Félix
Molecules.2025; 30(17): 3552. CrossRef - Phage-encoded depolymerases and endolysins as prospective strategies to combat multidrug-resistant Klebsiella pneumoniae
Yunhan Zhang, Weiqing Lan, Xiaohong Sun
International Journal of Biological Macromolecules.2025; 321: 146159. CrossRef -
Isolation and characterization of a novel K3-type capsule-targeting phage for the treatment of carbapenem-resistant
Acinetobacter baumannii
Hewen Deng, Ziqiang Liu, Siyun Wang, Shitong Lu, Ruopeng Cai, Linwan Feng, Kun Shi, Xin Tan, Rui Du, Hui Wang
Microbiology Spectrum.2025;[Epub] CrossRef - Effect of Bacteriophages against Biofilms of Escherichia coli on Food Processing Surfaces
Ana Brás, Márcia Braz, Inês Martinho, João Duarte, Carla Pereira, Adelaide Almeida
Microorganisms.2024; 12(2): 366. CrossRef - Bacteriophage–Host Interactions and the Therapeutic Potential of Bacteriophages
Leon M. T. Dicks, Wian Vermeulen
Viruses.2024; 16(3): 478. CrossRef - Current Strategies for Combating Biofilm-Forming Pathogens in Clinical Healthcare-Associated Infections
Rashmita Biswas, Bhawana Jangra, Ganapathy Ashok, Velayutham Ravichandiran, Utpal Mohan
Indian Journal of Microbiology.2024; 64(3): 781. CrossRef - Phage Adsorption to Gram-Positive Bacteria
Audrey Leprince, Jacques Mahillon
Viruses.2023; 15(1): 196. CrossRef - Prevalence of Indigenous Antibiotic-Resistant Salmonella Isolates and Their Application to Explore a Lytic Phage vB_SalS_KFSSM with an Intra-Broad Specificity
Jaein Choe, Su-Hyeon Kim, Ji Min Han, Jong-Hoon Kim, Mi-Sun Kwak, Do-Won Jeong, Mi-Kyung Park
Journal of Microbiology.2023; 61(12): 1063. CrossRef - Phages against Pathogenic Bacterial Biofilms and Biofilm-Based Infections: A Review
Siyu Liu, Hongyun Lu, Shengliang Zhang, Ying Shi, Qihe Chen
Pharmaceutics.2022; 14(2): 427. CrossRef
- Antiviral effects of human placenta hydrolysate (Laennec) against SARS-CoV-2 in vitro and in the ferret model
-
Eun-Ha Kim , Young-il Kim , Seung-Gyu Jang , Minju Im , Kyeongsoo Jeong , Young Ki Choi , Hae-Jung Han
-
J. Microbiol. 2021;59(11):1056-1062. Published online October 6, 2021
-
DOI: https://doi.org/10.1007/s12275-021-1367-2
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379
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8
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8
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Abstract
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The COVID-19 pandemic has caused unprecedented health,
social, and economic crises worldwide. However, to date, there
is an only a limited effective treatment for this disease. Human
placenta hydrolysate (hPH) has previously been shown to be
safe and to improve the health condition in patients with hyperferritinemia
and COVID-19. In this study, we aimed to
determine the antiviral effects of hPH against SARS-CoV-2
in vitro and in vivo models and compared with Remdesivir,
an FDA-approved drug for COVID-19 treatment. To assess
whether hPH inhibited SARS-CoV-2 replication, we determined
the CC50, EC50, and selective index (SI) in Vero cells
by infection with a SARS-CoV-2 at an MOI of 0.01. Further,
groups of ferrets infected with 105.8 TCID50/ml of SARS-CoV-2
and treated with hPH at 2, 4, 6 dpi, and compared their clinical
manifestation and virus titers in respiratory tracts with
PBS control-treated group. The mRNA expression of immunerelated
cytokines was determined by qRT-PCR. hPH treatment
attenuated virus replication in a dose-dependent manner in
vitro. In a ferret infection study, treatment with hPH resulted
in minimal bodyweight loss and attenuated virus replication
in the nasal wash, turbinates, and lungs of infected ferrets.
In addition, qRT-PCR results revealed that the hPH treatment
remarkably upregulated the gene expression of type I
(IFN-α and IFN-β) and II (IFN-γ) IFNs in SARS-CoV-2 infected
ferrets. Our data collectively suggest that hPH has antiviral
efficacy against SARS-CoV-2 and might be a promising
therapeutic agent for the treatment of SARS-CoV-2 infection.
-
Citations
Citations to this article as recorded by

- Development and validation of a novel RP-HPLC method for determination of Remdesivir: Investigation of the greenness for the proposed method
Karthika Paul, B.H. Jaswanth Gowda, R.S. Chandan
Results in Chemistry.2025; 16: 102382. CrossRef - Perinatal Hypoxia and Immune System Activation in Schizophrenia Pathogenesis: Critical Considerations During COVID-19 Pandemic
I Kawikova, K Hakenova, M Lebedeva, L Kleteckova, L Jakob, V Spicka, L Wen, F Spaniel, K Vales
Physiological Research.2024; : S615. CrossRef - Human Placenta Extract (HPH) Suppresses Inflammatory Responses in TNF-α/IFN-γ-Stimulated HaCaT Cells and a DNCB Atopic Dermatitis (AD)-Like Mouse Model
Jung Ok Lee, Youna Jang, A Yeon Park, Jung Min Lee, Kyeongsoo Jeong, So-Hyun Jeon, Hui Jin, Minju Im, Jae-Won Kim, Beom Joon Kim
Journal of Microbiology and Biotechnology.2024; 34(10): 1969. CrossRef - Systematic analysis of the pharmacology of standardized extracts of human placenta
T. E. Bogacheva, I. Yu. Torshin, O. A. Gromova
Pharmacokinetics and Pharmacodynamics.2024; (4): 3. CrossRef - Distinctive Combinations of RBD Mutations Contribute to Antibody Evasion in the Case of the SARS-CoV-2 Beta Variant
Tae-Hun Kim, Sojung Bae, Sunggeun Goo, Jinjong Myoung
Journal of Microbiology and Biotechnology.2023; 33(12): 1587. CrossRef - Current state-of-the-art and potential future therapeutic drugs against COVID-19
Ailong Sha, Yi Liu, Haiyan Hao
Frontiers in Cell and Developmental Biology.2023;[Epub] CrossRef - SARS-CoV-2 Aerosol and Intranasal Exposure Models in Ferrets
Elizabeth E. Zumbrun, Samantha E. Zak, Eric D. Lee, Philip A. Bowling, Sara I. Ruiz, Xiankun Zeng, Jeffrey W. Koehler, Korey L. Delp, Russel R. Bakken, Shannon S. Hentschel, Holly A. Bloomfield, Keersten M. Ricks, Tamara L. Clements, April M. Babka, John
Viruses.2023; 15(12): 2341. CrossRef - Human placenta hydrolysates: from V.P. Filatov to the present day: Review
Olga A. Gromova, Ivan Yu. Torshin, Alexander G. Chuchalin, Valeriy А. Maximov
Terapevticheskii arkhiv.2022; 94(3): 434. CrossRef
- The role of Jacalin-related lectin gene AOL_s00083g511 in the development and pathogenicity of the nematophagous fungus Arthrobotrys oligospora
-
Xinyuan Dong , Jiali Si , Guanghui Zhang , Zhen Shen , Li Zhang , Kangliang Sheng , Jingmin Wang , Xiaowei Kong , Xiangdong Zha , Yongzhong Wang
-
J. Microbiol. 2021;59(8):736-745. Published online July 5, 2021
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DOI: https://doi.org/10.1007/s12275-021-1029-4
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362
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4
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3
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Abstract
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Arthrobotrys oligospora is a model species of nematophagous
fungi and has great potential for the biological control of nematode
diseases. Lectin is a protein that binds to carbohydrates
and their complexes with high specificity, which mediates recognition
events in various physiological and pathological
processes. This study aimed to investigate the role of the
Jacalin-related lectin (JRL) gene, AOL_s00083g511, in A. oligospora
development. Through a homology recombination
approach, we obtained the AOL_s00083g511 knockout mutant
strain (Δg511). Next, the biological characteristics of the
Δg511 mutant strain, including growth rate, conidia germination
rate, adaptation to environmental stresses, and nematocidal
activity, were compared with those of the wild-type
(WT) strain. The results showed that the JRL gene AOL_
s00083g511 did not affect fungal growth, conidia germination,
3D-trap formation, and the ability of A. oligospora to
prey on nematodes significantly. We speculate that this phenomenon
may be caused by a loss of the key β1–β2 loops in
the AOL_ s00083g511-encoded JRL domain and an intrinsic
genetic compensation of AOL_s00083g511 in this fungus.
The growth rates of both strains on high salt or surfactant media
were similar; however, in the strong oxidation medium,
the growth rate of the Δg511 mutant was significantly lower
than that of the WT strain, indicating that AOL_s00083g511
might play a role in oxidative stress resistance. These findings
provide a basis for further analysis of the related functions
of the JRL gene in A. oligospora and their potential roles
in the biological control of nematodes in the future.
-
Citations
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- Function discovery of a non-ribosomal peptide synthetase-like encoding gene in the nematode-trapping fungus Arthrobotrys oligospora
Tiantian Gu, Hengqian Lu, Huiwen Liu, Guanghui Zhang, Yongzhong Wang
Frontiers in Microbiology.2023;[Epub] CrossRef - The fucose-specific lectin gene AOL_s00054g276 affects trap formation and nematocidal activity of the nematophagous fungus Arthrobotrys oligospora
Jiali Si, Xinyuan Dong, Guanghui Zhang, Hengqian Lu, Kaijing Tang, Li Zhang, Xiaowei Kong, Kangliang Sheng, Jingmin Wang, Xiangdong Zha, Yongzhong Wang
FEMS Microbiology Letters.2022;[Epub] CrossRef - Phospholipase C (AoPLC2) regulates mycelial development, trap morphogenesis, and pathogenicity of the nematode-trapping fungus Arthrobotrys oligospora
Meihua Xie, Ni Ma, Na Bai, Meichen Zhu, Ke-Qin Zhang, Jinkui Yang
Journal of Applied Microbiology.2022; 132(3): 2144. CrossRef
- Molecular characterization of Hsf1 as a master regulator of heat shock response in the thermotolerant methylotrophic yeast Ogataea parapolymorpha
-
Jin Ho Choo , Su-Bin Lee , Hye Yun Moon , Kun Hwa Lee , Su Jin Yoo , Keun Pil Kim , Hyun Ah Kang
-
J. Microbiol. 2021;59(2):151-163. Published online February 1, 2021
-
DOI: https://doi.org/10.1007/s12275-021-0646-2
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331
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5
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3
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Abstract
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Ogataea parapolymorpha (Hansenula polymorpha DL-1) is
a thermotolerant methylotrophic yeast with biotechnological
applications. Here, O. parapolymorpha genes whose expression
is induced in response to heat shock were identified by
transcriptome analysis and shown to possess heat shock elements
(HSEs) in their promoters. The function of O. parapolymorpha
HSF1 encoding a putative heat shock transcription
factor 1 (OpHsf1) was characterized in the context of heat
stress response. Despite exhibiting low sequence identity
(26%) to its Saccharomyces cerevisiae homolog, OpHsf1 harbors
conserved domains including a DNA binding domain
(DBD), domains involved in trimerization (TRI), transcriptional
activation (AR1, AR2), transcriptional repression (CE2),
and a C-terminal modulator (CTM) domain. OpHSF1 could
complement the temperature sensitive (Ts) phenotype of a
S. cerevisiae hsf1 mutant. An O. parapolymorpha strain with
an H221R mutation in the DBD domain of OpHsf1 exhibited
significantly retarded growth and a Ts phenotype. Intriguingly,
the expression of heat-shock-protein‒coding genes harboring
HSEs was significantly decreased in the H221R mutant
strain, even under non-stress conditions, indicating the importance
of the DBD for the basal growth of O. parapolymorpha.
Notably, even though the deletion of C-terminal domains
(ΔCE2, ΔAR2, ΔCTM) of OpHsf1 destroyed complementation
of the growth defect of the S. cerevisiae hsf1 strain,
the C-terminal domains were shown to be dispensable in O.
parapolymorpha. Overexpression of OpHsf1 in S. cerevisiae
increased resistance to transient heat shock, supporting the
idea that OpHsf1 could be useful in the development of heatshock‒
resistant yeast host strains.
-
Citations
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- A comprehensive review and comparison of L-tryptophan biosynthesis in Saccharomyces cerevisiae and Escherichia coli
Xinru Ren, Yue Wei, Honglu Zhao, Juanjuan Shao, Fanli Zeng, Zhen Wang, Li Li
Frontiers in Bioengineering and Biotechnology.2023;[Epub] CrossRef - Heat shock in Cronobacter sakazakii induces direct protection and cross-protection against simulated gastric fluid stress
Hongmei Niu, MingzheYang, Yonghua Qi, Yangtai Liu, Xiang Wang, Qingli Dong
Food Microbiology.2022; 103: 103948. CrossRef - A review of yeast: High cell-density culture, molecular mechanisms of stress response and tolerance during fermentation
Dongxu Shen, Xiaoli He, Peifang Weng, Yanan Liu, Zufang Wu
FEMS Yeast Research.2022;[Epub] CrossRef
- Development of a strategy for the screening of α-glucosidase-producing microorganisms
-
Bo Zhou+ , Nan Huang+ , Wei Zeng+ , Hao Zhang , Guiguang Chen , Zhiqun Liang
-
J. Microbiol. 2020;58(2):163-172. Published online January 29, 2020
-
DOI: https://doi.org/10.1007/s12275-020-9267-4
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364
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5
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5
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Abstract
PDF
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α-Glucosidase is a crucial enzyme for the production of isomaltooligosaccharide.
In this study, a novel method comprising
eosin Y (EY) and α-D-methylglucoside (AMG) in glass
plates was tested for the primary screening of α-glucosidaseproducing
strains. First, α-glucosidase-producing Aspergillus
niger strains were selected on plates containing EY and AMG
based on transparent zone formation resulting from the solubilization
of EY by the hydrolyzed product. Conventional
methods
that use trypan blue (TB) and p-nitrophenyl-α-Dglucopyranoside
(pPNP) as indicators were then compared
with the new strategy. The results showed that EY-containing
plates provide the advantages of low price and higher specificity
for the screening of α-glucosidase-producing strains.
We then evaluated the correlation between the hydrolytic activity
of α-glucosidase and diffusion distance, and found that
good linearity could be established within a 6–75 U/ml enzyme
concentration range. Finally, the hydrolytic and transglycosylation
activities of α-glucosidase obtained from the
target isolates were determined by EY plate assay and 3,5-
dinitrosalicylic acid-Saccharomyces cerevisiae assay, respectively.
The results showed that the diameter of the transparent
zone varied among isolates was positively correlated with
α-glucosidase hydrolytic activity, while good linearity could
also be established between α-glucosidase transglycosylation
activity and non-fermentable reducing sugars content. With
this strategy, 7 Aspergillus niger mutants with high yield of
α-glucosidase from 200 obvious single colonies on the primary
screen plate were obtained.
-
Citations
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- Enhanced Production, Purification, and Characterization of α-Glucosidase from NTG-Mutagenized Aspergillus niger for Industrial Applications
Bowei Yao, Qian Liu, Junjie Xiong, Guangming Feng, Zhongyi Chang, Hongliang Gao
Catalysts.2025; 15(5): 450. CrossRef - Purification, characterization of a novel α-glucosidase from Debaryomyces hansenii strain MCC 0202 and chromatographic separation for high purity isomalto-oligosaccharides production
Saravanan Rengarajan, Rameshthangam Palanivel
Process Biochemistry.2024; 136: 109. CrossRef - Development of a PMA‐LAMP visual detection assay for viable Cronobacter sakazakii
Qiming Chen, Yang Yu, Xiaodi Chen, Fangming Tu, Peng Wang, Junyi Huang, Zhanmin Liu
International Journal of Dairy Technology.2024; 77(2): 427. CrossRef - Identification of chitin synthase activator in Aspergillus niger and its application in citric acid fermentation
Chunxu Jiang, Han Wang, Menghan Liu, Li Wang, Ruwen Yang, Peng Wang, Zongmei Lu, Yong Zhou, Zhiming Zheng, Genhai Zhao
Applied Microbiology and Biotechnology.2022; 106(21): 6993. CrossRef - Cloning and characterization of a recombinant α-glucosidase from Ensifer adhaerens NBRC 100388 and evaluation of its glucosyl transfer activity
Tatsuya Suzuki, Miyu Fukaya, Kazuki Takahashi, Michiki Takeuchi, Ryotaro Hara, Jun Ogawa, Makoto Ueda
Biocatalysis and Agricultural Biotechnology.2020; 30: 101837. CrossRef
- Partial characteristics of hemolytic factors secreted from airborne Aspergillus and Penicillium, and an enhancement of hemolysis by Aspergillus micronesiensis CAMP-like factor via Staphylococcus aureus-sphingomyelinase
-
Sumonrat Kaveemongkonrat , Kwanjit Duangsonk , Jos Houbraken , Phimchat Suwannaphong , Nongnuch Vanittanakom Vanittanakom , Malee Mekaprateep
-
J. Microbiol. 2019;57(12):1086-1094. Published online November 4, 2019
-
DOI: https://doi.org/10.1007/s12275-019-9133-4
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337
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3
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2
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Abstract
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One of the advantages for initial survival of inhaled fungal
spores in the respiratory tract is the ability for iron acquisition
via hemolytic factor-production. To examine the ability
of indoor Aspergillus and Penicillium affecting hemolysis,
the secreted factors during the growth of thirteen strains from
eight species were characterized in vitro for their hemolytic
activity (HA) and CAMP-like reaction. The hemolytic index
of HA on human blood agar of Aspergillus micronesiensis,
Aspergillus wentii, Aspergillus westerdijkiae, Penicillium citrinum,
Penicillium copticola, Penicillium paxilli, Penicillium
steckii, and Penicillium sumatrense were 1.72 ± 0.34, 1.61 ±
0.41, 1.69 ± 0.16, 1.58 ± 0.46, 3.10 ± 0.51, 1.22 ± 0.19, 2.55 ±
0.22, and 1.90 ± 0.14, respectively. The secreted factors of
an Aspergillus wentii showed high HA when grown in undernourished
broth at 25°C at an exponential phase and were
heat sensitive. Its secreted proteins have an estimated relative
molecular weight over 50 kDa. Whereas, the factors of
Penicillium steckii were secreted in a similar condition at a
late exponential phase but showed low HA and heat tolerance.
In a CAMP-like test with sheep blood, the synergistic hemolytic
reactions between most tested mold strains and Staphylococcus
aureus were identified. Moreover, the enhancement
of α-hemolysis of Staphylococcus aureus could occur through
the interaction of Staphylococcus aureus-sphingomyelinase
and CAMP-like factors secreted from Aspergillus micronesiensis.
Further studies on the characterization of purified hemolytic-
and CAMP-like-factors secreted from Aspergillus
wentii and Aspergillus micronesiensis may lead to more understanding
of their involvement of hemolysis
-
Citations
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- Green Synthesis of Endolichenic Fungi Functionalized Silver Nanoparticles: The Role in Antimicrobial, Anti-Cancer, and Mosquitocidal Activities
Yugal Kishore Mohanta, Debasis Nayak, Awdhesh Kumar Mishra, Ishani Chakrabartty, Manjit Kumar Ray, Tapan Kumar Mohanta, Kumananda Tayung, Rajapandian Rajaganesh, Murugan Vasanthakumaran, Saravanan Muthupandian, Kadarkarai Murugan, Gouridutta Sharma, Hans-
International Journal of Molecular Sciences.2022; 23(18): 10626. CrossRef - Group B Streptococcus CAMP Factor Does Not Contribute to Interactions with the Vaginal Epithelium and Is Dispensable for Vaginal Colonization in Mice
Mallory B. Ballard, Vicki Mercado-Evans, Madelynn G. Marunde, Hephzibah Nwanosike, Jacob Zulk, Kathryn A. Patras, Mariola J. Edelmann
Microbiology Spectrum.2021;[Epub] CrossRef
- The velvet repressed vidA gene plays a key role in governing development in Aspergillus nidulans
-
Min-Ju Kim , Won-Hee Jung , Ye-Eun Son , Jae-Hyuk Yu , Mi-Kyung Lee , Hee-Soo Park
-
J. Microbiol. 2019;57(10):893-899. Published online August 28, 2019
-
DOI: https://doi.org/10.1007/s12275-019-9214-4
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316
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15
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13
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Abstract
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Fungal development is regulated by a variety of transcription
factors in Aspergillus nidulans. Previous studies demonstrated
that the NF-κB type velvet transcription factors regulate certain
target genes that govern fungal differentiation and cellular
metabolism. In this study, we characterize one of the
VosA/VelB-inhibited developmental genes called vidA, which
is predicted to encode a 581-amino acid protein with a C2H2
zinc finger domain at the C-terminus. Levels of vidA mRNA
are high during the early and middle phases of asexual development
and decrease during the late phase of asexual development
and asexual spore (conidium) formation. Deletion
of either vosA or velB results in increased vidA mRNA accumulation
in conidia, suggesting that vidA transcript accumulation
in conidia is repressed by VosA and VelB. Phenotypic
analysis demonstrated that deletion of vidA causes decreased
colony growth, reduced production of asexual spores,
and abnormal formation of sexual fruiting bodies. In addition,
the vidA deletion mutant conidia contain more trehalose
and β-glucan than wild type. Overall, these results suggest
that VidA is a putative transcription factor that plays a
key role in governing proper fungal growth, asexual and sexual
development, and conidia formation in A. nidulans.
-
Citations
Citations to this article as recorded by

- Characterization of Blue Light Receptors LreA and LreB in Aspergillus flavus
Hye-Min Park, Ye-Eun Son, He-Jin Cho, Jae-Hyuk Yu, Hee-Soo Park
Journal of Microbiology and Biotechnology.2025;[Epub] CrossRef - Regulators of the Asexual Life Cycle of Aspergillus nidulans
Ye-Eun Son, Jae-Hyuk Yu, Hee-Soo Park
Cells.2023; 12(11): 1544. CrossRef - The Forkhead Gene fkhB is Necessary for Proper Development in Aspergillus nidulans
Seo-Yeong Jang, Ye-Eun Son, Dong-Soon Oh, Kap-Hoon Han, Jae-Hyuk Yu, Hee-Soo Park
Journal of Microbiology and Biotechnology.2023; 33(11): 1420. CrossRef - The function of a conidia specific transcription factor CsgA in Aspergillus nidulans
He-Jin Cho, Hee-Soo Park
Scientific Reports.2022;[Epub] CrossRef - The Putative C2H2 Transcription Factor VadH Governs Development, Osmotic Stress Response, and Sterigmatocystin Production in Aspergillus nidulans
Xiaoyu Li, Yanxia Zhao, Heungyun Moon, Jieyin Lim, Hee-Soo Park, Zhiqiang Liu, Jae-Hyuk Yu
Cells.2022; 11(24): 3998. CrossRef - The Role of Chromatin and Transcriptional Control in the Formation of Sexual Fruiting Bodies in Fungi
Minou Nowrousian
Microbiology and Molecular Biology Reviews.2022;[Epub] CrossRef - Functions of PUF Family RNA-Binding Proteins in Aspergillus nidulans
Sung-Hun Son, Seo-Yeong Jang, Hee-Soo Park
Journal of Microbiology and Biotechnology.2021; 31(5): 676. CrossRef - The putative sensor histidine kinase VadJ coordinates development and sterigmatocystin production in Aspergillus nidulans
Yanxia Zhao, Mi-Kyung Lee, Jieyin Lim, Heungyun Moon, Hee-Soo Park, Weifa Zheng, Jae-Hyuk Yu
Journal of Microbiology.2021; 59(8): 746. CrossRef - Unveiling the Functions of the VosA-VelB Target GenevidDinAspergillus nidulans
Ye-Eun Son, Hee-Soo Park
Mycobiology.2021; 49(3): 258. CrossRef - Velvet activated McrA plays a key role in cellular and metabolic development in Aspergillus nidulans
Mi-Kyung Lee, Ye-Eun Son, Hee-Soo Park, Ahmad Alshannaq, Kap-Hoon Han, Jae-Hyuk Yu
Scientific Reports.2020;[Epub] CrossRef - The role of the VosA-repressed dnjA gene in development and metabolism in Aspergillus species
Ye-Eun Son, He-Jin Cho, Wanping Chen, Sung-Hun Son, Mi-Kyung Lee, Jae-Hyuk Yu, Hee-Soo Park
Current Genetics.2020; 66(3): 621. CrossRef - Homeobox proteins are essential for fungal differentiation and secondary metabolism in Aspergillus nidulans
Sung-Hun Son, Ye-Eun Son, He-Jin Cho, Wanping Chen, Mi-Kyung Lee, Lee-Han Kim, Dong-Min Han, Hee-Soo Park
Scientific Reports.2020;[Epub] CrossRef - The brlA Gene Deletion Reveals That Patulin Biosynthesis Is Not Related to Conidiation in Penicillium expansum
Chrystian Zetina-Serrano, Ophélie Rocher, Claire Naylies, Yannick Lippi, Isabelle P. Oswald, Sophie Lorber, Olivier Puel
International Journal of Molecular Sciences.2020; 21(18): 6660. CrossRef
- Whole genome analysis of Aspergillus sojae SMF 134 supports its merits as a starter for soybean fermentation
-
Kang Uk Kim , Kyung Min Kim , Yong-Ho Choi , Byung-Serk Hurh , Inhyung Lee
-
J. Microbiol. 2019;57(10):874-883. Published online June 27, 2019
-
DOI: https://doi.org/10.1007/s12275-019-9152-1
-
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399
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0
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15
Web of Science
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15
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-
Abstract
PDF
-
Aspergillus sojae is a koji (starter) mold that has been applied
for food fermentation in Asia. The whole genome of A. sojae
SMF 134, which was isolated from meju (Korean soybean
fermented brick), was analyzed at the genomic level to evaluate
its potential as a starter for soybean fermentation. The
genome size was 40.1 Mbp, which was expected to be composed
of eight chromosomes with 13,748 ORFs. Strain SMF
134 had a total of 151 protease genes, among which two more
leucine aminopeptidase (lap) genes were found in addition to
the previously known lap1, and three γ-glutamyltranspeptidase
(ggt) genes were newly identified. Such genomic characteristics
of SMF 134 with many protease and flavor-related
(lap and ggt) genes support its merits as a starter for soybean
fermentation. In addition, this first complete genome of
A. sojae will allow for further genetic studies to better understand
the production of various enzymes, including proteases,
LAPs, and GGTs, as well as other characteristics as a starter
mold for soybean fermentation.
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Citations
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- Population Genomics of Aspergillus sojae is Shaped by the Food Environment
Kimberly L Acevedo, Elizabeth Eaton, Julia Leite, Shu Zhao, Katherine Chacon-Vargas, Colin M McCarthy, Dasol Choi, Samuel O’Donnell, Emile Gluck-Thaler, Jae-Hyuk Yu, John G Gibbons, Rebecca Zufall
Genome Biology and Evolution.2025;[Epub] CrossRef - Starter molds and multi-enzyme catalysis in koji fermentation of soy sauce brewing: A review
Yihao Liu, Guangru Sun, Jingyao Li, Peng Cheng, Qian Song, Wen Lv, Chunling Wang
Food Research International.2024; 184: 114273. CrossRef - Phenotypic, Genomic, and Transcriptomic Comparison of Industrial Aspergillus oryzae Used in Chinese and Japanese Soy Sauce: Analysis of Key Proteolytic Enzymes Produced by Koji Molds
Lijie Zhang, Le Kang, Yan Xu, Yanbin Yin
Microbiology Spectrum.2023;[Epub] CrossRef - Characteristics of the soy sauce taste and koji enzyme profiles as affected by soybean traits
Yimin Chen, Mouming Zhao, Yunzi Feng
Food Bioscience.2023; 53: 102776. CrossRef - Comparative proteome and volatile metabolome analysis of Aspergillus oryzae 3.042 and Aspergillus sojae 3.495 during koji fermentation
Jingyao Li, Bin Liu, Xiaojuan Feng, Mengli Zhang, Tingting Ding, Yue Zhao, Chunling Wang
Food Research International.2023; 165: 112527. CrossRef - CRISPR/Cas9 genome editing for comparative genetic analysis related to soy sauce brewing in Aspergillus sojae industrial strains
Takayuki Igarashi, Takuya Katayama, Jun-ichi Maruyama
Bioscience, Biotechnology, and Biochemistry.2023; 87(10): 1236. CrossRef - Untargeted metabolomic profiling of Aspergillus sojae 3.495 and Aspergillus oryzae 3.042 fermented soy sauce koji and effect on moromi fermentation flavor
Jingyao Li, Chengguo Sun, Zhanyu Shen, Yutong Tian, Fanghua Mo, Binghui Wang, Bin Liu, Chunling Wang
LWT.2023; 184: 115027. CrossRef - Identification of Virulence Factors in Entomopathogenic Aspergillus flavus Isolated from Naturally Infected Rhipicephalus microplus
Cesar A. Arreguin-Perez, Estefan Miranda-Miranda, Jorge Luis Folch-Mallol, Raquel Cossío-Bayúgar
Microorganisms.2023; 11(8): 2107. CrossRef - Are Current Aspergillus sojae Strains Originated from a Native Aflatoxigenic Aspergillus Species Population Also Present in California?
Perng-Kuang Chang, Sui Sheng T. Hua
Mycobiology.2023; 51(3): 139. CrossRef - Investigating the origin of subtelomeric and centromeric AT-rich elements in Aspergillus flavus
Arthur J. Lustig, Cecile Fairhead
PLOS ONE.2023; 18(2): e0279148. CrossRef -
Whole-genome sequence of an
Aspergillus parasiticus
strain isolated from Kenyan soil
Alexandra Schamann, Rolf Geisen, Markus Schmidt-Heydt, Antonis Rokas
Microbiology Resource Announcements.2023;[Epub] CrossRef - Ethno-microbiology of Tempe, an Indonesian fungal-fermented soybean food and Koji, a Japanese fungal starter culture
Jyoti P Tamang, Anu Anupma, Headstar Nakibapher Jones Shangpliang
Current Opinion in Food Science.2022; 48: 100912. CrossRef - Regulation of Conidiogenesis in Aspergillus flavus
He-Jin Cho, Sung-Hun Son, Wanping Chen, Ye-Eun Son, Inhyung Lee, Jae-Hyuk Yu, Hee-Soo Park
Cells.2022; 11(18): 2796. CrossRef - High molecular weight DNA extraction methods lead to high quality filamentous ascomycete fungal genome assemblies using Oxford Nanopore sequencing
Celine Petersen, Trine Sørensen, Klaus R. Westphal, Lavinia I. Fechete, Teis E. Sondergaard, Jens L. Sørensen, Kåre L. Nielsen
Microbial Genomics
.2022;[Epub] CrossRef - Koji Molds for Japanese Soy Sauce Brewing: Characteristics and Key Enzymes
Kotaro Ito, Asahi Matsuyama
Journal of Fungi.2021; 7(8): 658. CrossRef
- Screening and identification of Aspergillus activity against Xanthomonas oryzae pv. oryzae and analysis of antimicrobial components
-
Bei Jiang , Zhiying Wang , Chuxuan Xu , Weijia Liu , Donghua Jiang
-
J. Microbiol. 2019;57(7):597-605. Published online June 27, 2019
-
DOI: https://doi.org/10.1007/s12275-019-8330-5
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340
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12
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12
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Abstract
PDF
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To screen for Aspergillus activity against Xanthomonas oryzae
pv. oryzae and analyse the antimicrobial components
involved, 60 Aspergillus spp. were isolated and purified from
fruits, soil and other habitats. As-75, an Aspergillus strain that
can antagonize Xanthomonas oryzae pv. oryzae, was identified
based on the zone of inhibition formed during co-culture.
According to morphological, ITS rDNA gene sequencing
and phylogenetic tree results, the strain showed close
homology to Aspergillus sclerotiorum. The biochemical characterization
tests showed that the fermentation broth of strain
As-75 exhibited a high capacity for environmental adaptation.
The results of the antimicrobial spectrum experiments demonstrated
that As-75 exhibited fairly strong antagonistic activity
against five plant pathogenic fungi and six plant pathogenic
bacteria in vitro. The fermentation broth of strain As-75
displayed maximum stability under fluorescent illumination
at temperatures below 60°C at pH 6.5. A substance with antagonistic
activity was obtained from strain As-75 via fractional
extraction, silica gel column chromatography and thinlayer
chromatography. Through mass spectrometry, nuclear
magnetic resonance and electrospray ionization mass spectrometry
(ESI-MS) analyses, the target compound was identified
as (2Z)-2-butenedioic acid-2-(1-methylethenyl)-4-methyl
ester; its molecular weight of 170.06 daltons and formula
of C8H10O4 identify it as a novel compound. Trials of
the preventative and curative effects demonstrated that compound
S1 exhibited a better control efficiency than the control
against rice bacterial blight. Additionally, the M1 processing
method
was better, and the efficiency of compound
S1 in preventing rice bacterial blight in six rice varieties,
TN1, IR24, ZF802, Zhonghua 11, Wuyunjing 21, and Nipponbare,
was 78.3%, 77.5%, 74.2%, 75.3%, 70.9%, and 72.1%,
respectively.
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- Screening and identification of Aspergillus sclerotiorum with activity against Metschnikowia bicuspidata and initial application on "milky disease" in Eriocheir sinensis
Senting Pu, Zhouling Chen, Dong Sheng, Yunmeng Shan, Peilin Zhou, Xinran Shi, Kexin Hao, Shigen Ye
Aquaculture.2025; 595: 741653. CrossRef - Isolation and anti-Xanthomonas citri activity of unguinol produced by Aspergillus unguis CBMAI 2140
Eduarda Araujo dos Santos, Vítor Rodrigues Marin, Derlene Atilli de Angelis, Henrique Ferreira, Daiane Cristina Sass
Letters in Applied Microbiology.2025;[Epub] CrossRef - Mechanisms underlying the biocontrol activity of Serratia marcescens YNAU-SM-1 against Phytophthora infestans in potato
Chunjiang Liu, Linmei Deng, Jian Dao, Wenping Wang, Xun Huang, Yue Zhang, Yanli Yang, Shaofeng Lu, Jing Zhao, Xia Liu
BMC Plant Biology.2025;[Epub] CrossRef -
Application and antagonistic mechanisms of atoxigenic
Aspergillus
strains for the management of fungal plant diseases
Suyan Wang, Yanxia Wang, Xinchi Shi, Daniela D. Herrera-Balandrano, Xin Chen, Fengquan Liu, Pedro Laborda, Irina S. Druzhinina
Applied and Environmental Microbiology.2024;[Epub] CrossRef - Screening of indigenous entomopathogenic fungal isolates on plant parasitic nematodes in China
Ming Fang, Jie Sun, Ailing Wang, Hongbo Tang, Lei Wang, Xianqin Wei, Weibin Ruan
European Journal of Plant Pathology.2024; 169(4): 787. CrossRef - Synergy in Rice Immunity: Exploring Strategies of Coordinated Disease Defense Through Receptor-Like Kinases and Receptor- Like Cytoplasmic Kinases
Mengtian Pei, Yingying Cao, Xuze Xie, Ying Cao, Jia Chen, Xi Zhang, Zonghua Wang, Guodong Lu, Shenghang Zhang
Rice Science.2024; 31(6): 643. CrossRef - Antimicrobial cyclic lipopeptides from Bacillus mojovensis B1302 against wheat root rot
Yanjie Yi, Shijie Liu, Shihao Ren, Yunpeng Shen, Xinyue Lin, Jia Shi, Kang Wang, Changfu Zhang
Rhizosphere.2024; 32: 100963. CrossRef - Screening<italic> Streptomyces </italic>against <italic>Xanthomonas axonopodis</italic> pv<italic>. glycines</italic> and study of growth-promoting and biocontrol effect
Xuan-Dong WANG, Sun-Yu-Yue YANG, Run-Jie GAO, Jun-Jie YU, Dan-Pei ZHENG, Feng NI, Dong-Hua JIANG
Acta Agronomica Sinica.2022; 48(6): 1546. CrossRef - Effect of microwave radiation combined with cellulase treatment of soybean residue on the culture of Aspergillus oryzae
Huaixiang Tian, Yao Liu, Li Li, Chen Chen, Haiyan Yu, Xinxin Ma, Juan Huang, Xinman Lou, Haibin Yuan
Food Bioscience.2022; 50: 101988. CrossRef - Compound fermentation supernatants of antagonistic bacteria control Rhizoctonia cerealis and promote wheat growth
Yanjie Yi, Yang Liu, Pengyu Luan, Zhipeng Hou, Yanhui Yang, Ruifang Li, Zhenpu Liang, Xiaoxia Zhang, Shulei Liu
Egyptian Journal of Biological Pest Control.2022;[Epub] CrossRef - Screening of antagonistic bacteria against the blue mold of citrus fruit from soil by a new parallel screening method without prior isolation of single strains
Zhenzhen Sun, Tingting Liu, Zhe Liu, Chaozhen Zeng, Zhixiang Liu
Biological Control.2022; 176: 105066. CrossRef - Berkchaetoazaphilone B has antimicrobial activity and affects energy metabolism
Xudong Ouyang, Jelmer Hoeksma, Gisela van der Velden, Wouter A. G. Beenker, Maria H. van Triest, Boudewijn M. T. Burgering, Jeroen den Hertog
Scientific Reports.2021;[Epub] CrossRef
- Expression of sexual genes in Aspergillus fumigatus homogeneous culture produced by vegetative mass mating
-
Joo-Yeon Lim , Hee-Moon Park
-
J. Microbiol. 2019;57(8):688-693. Published online May 11, 2019
-
DOI: https://doi.org/10.1007/s12275-019-9094-7
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345
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3
Web of Science
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3
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Abstract
PDF
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There are presently no studies on the genes for sexual development
of Aspergillus fumigatus in situ using mating culture,
primarily because of challenging experimental conditions
that require a significantly long period of induction and produce
developmentally heterogenous culture, harboring very
few sexual organs. In order to overcome these challenges, we
developed an efficient and convenient procedure called ‘vegetative
mass mating (VeM)’ for study at a molecular level.
The VeM method enabled production of a developmentally
homogenous A. fumigatus culture, harboring many sexual
organs in a plate within a short period of two weeks. Feasibility
of the use of VeM for functional study of genes during
A. fumigatus sexual development was evaluated by analyzing
the transcription pattern of genes involved in pheromone signal
transduction and regulation of sexual development. Here,
we present for the first time, an in situ expression pattern of
sexual genes during the mating process, induced by the VeM
method
, which will enable and promote the sexual development
study of A. fumigatus at the molecular level.
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- The Gβ-like Protein AfCpcB Affects Sexual Development, Response to Oxidative Stress and Phagocytosis by Alveolar Macrophages in Aspergillus fumigatus
Joo-Yeon Lim, Yeon-Ju Kim, Hee-Moon Park
Journal of Fungi.2022; 8(1): 56. CrossRef - The LAMMER Kinase, LkhA, Affects Aspergillus fumigatus Pathogenicity by Modulating Reproduction and Biosynthesis of Cell Wall PAMPs
Joo-Yeon Lim, Yeon Ju Kim, Seul Ah Woo, Jae Wan Jeong, Yu-Ri Lee, Cheol-Hee Kim, Hee-Moon Park
Frontiers in Cellular and Infection Microbiology.2021;[Epub] CrossRef - Global Sexual Fertility in the Opportunistic Pathogen Aspergillus fumigatus and Identification of New Supermater Strains
Sameira S. Swilaiman, Céline M. O’Gorman, Wenyue Du, Janyce A. Sugui, Joanne Del Buono, Matthias Brock, Kyung J. Kwon-Chung, George Szakacs, Paul S. Dyer
Journal of Fungi.2020; 6(4): 258. CrossRef
- Biocontrol activity of volatile organic compounds from Streptomyces alboflavus TD-1 against Aspergillus flavus growth and aflatoxin production
-
Mingguan Yang , Laifeng Lu , Jing Pang , Yiling Hu , Qingbin Guo , Zhenjing Li , Shufen Wu , Huanhuan Liu , Changlu Wang
-
J. Microbiol. 2019;57(5):396-404. Published online May 6, 2019
-
DOI: https://doi.org/10.1007/s12275-019-8517-9
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469
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48
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47
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Abstract
PDF
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Aspergillus flavus is a saprophytic fungus that contaminates
crops with carcinogenic aflatoxin. In the present work, the
antifungal effects of volatile organic compounds (VOCs) from
Streptomyces alboflavus TD-1 against A. flavus were investigated.
VOCs from 8-day-old wheat bran culture of S. alboflavus
TD-1 displayed strong inhibitory effects against mycelial
growth, sporulation, and conidial germination of A.
flavus. Severely misshapen conidia and hyphae of A. flavus
were observed by scanning electron microscopy after exposure
to VOCs for 6 and 12 h, respectively. Rhodamine 123
staining of mitochondria indicated that mitochondria may
be a legitimate antifungal target of the VOCs from S. alboflavus
TD-1. Furthermore, the VOCs effectively inhibited
aflatoxin B1 production by downregulating genes involved
in aflatoxin biosynthesis. Dimethyl trisulfide and benzenamine
may play important roles in the suppression of A. flavus
growth and production of aflatoxin. The results indicate
that VOCs from S. alboflavus TD-1 have tremendous potential
to be developed as a useful bio-pesticide for controlling
A. flavus.
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Hellen Wambui Njoroge, Xue Yuwei, Zhou Shaoxia, Wang Mingzhao, Wu Mian, Zhang Ying, Ochola Sylvans Ochieng, Liu Hongxia
Postharvest Biology and Technology.2026; 231: 113877. CrossRef - Agricultural biocontrol potential of bacterial volatile organic compounds (bVOCs) for enhanced crop protection
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Crop Protection.2025; 190: 107114. CrossRef - Current Approaches to Aflatoxin B1 Control in Food and Feed Safety: Detection, Inhibition, and Mitigation
Katarzyna Kępka-Borkowska, Katarzyna Chałaśkiewicz, Magdalena Ogłuszka, Mateusz Borkowski, Adam Lepczyński, Chandra Shekhar Pareek, Rafał Radosław Starzyński, Elżbieta Lichwiarska, Sharmin Sultana, Garima Kalra, Nihal Purohit, Barbara Gralak, Ewa Poławska
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Hassan Etesami
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Tomohiro Furukawa, Masayo Kushiro, Hiroyuki Nakagawa, Shohei Sakuda
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Mingxuan Wang, Honglin Li, Jing Li, Wujin Zhang, Jianguo Zhang
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Divya Kapoor, Pankaj Sharma, Mayur Mukut Murlidhar Sharma, Sheetal Yadav, Azamal Husen
Biocatalysis and Agricultural Biotechnology.2024; 61: 103358. CrossRef - A potential biocontrol and growth-promoting agent Streptomyces luteoverticillatus B4 for managing cabbage Fusarium wilt and cucumber Alternaria leaf blight
Yuxin Li, Gang Wang, Tianxi Rao, Ying Chen, Xiangyu Tan, Erfeng Li
Physiological and Molecular Plant Pathology.2024; 134: 102440. CrossRef - Mitigating fungal contamination of cereals: The efficacy of microplasma-based far-UVC lamps against Aspergillus flavus and Fusarium graminearum
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Physiological and Molecular Plant Pathology.2024; 134: 102464. CrossRef -
Streptomyces
strains inhibit the growth of
Fusarium kuroshium
and
Fusarium solani
and promote the growth of
Arabidopsis thaliana
María Fernanda Ruiz-Cisneros, José de Jesús Ornelas-Paz, Daniel Alonso Pérez-Corral, Guadalupe Isela Olivas-Orozco, David Ignacio Berlanga-Reyes, Octavio Jhonathan Cambero-Campos, Mario Orlando Estrada-Virgen, Salvador Ordaz-Silva, Miguel Ángel Salas-Mari
Biocontrol Science and Technology.2024; 34(5): 469. CrossRef - Fumigation with dimethyl trisulfide to inhibit Aspergillus flavus growth, aflatoxin B1 production and virulence
Mingguan Yang, Honggui Lu, Nan Xiao, Yongjian Qin, Lei Sun, Rui Sun
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Hetvi Naik, Komal A. Chandarana, Harshida A. Gamit, Sapna Chandwani, Natarajan Amaresan
Journal of Crop Health.2024; 76(2): 371. CrossRef - Mycotoxin Contamination Status of Cereals in China and Potential Microbial Decontamination Methods
Jing Zhang, Xi Tang, Yifan Cai, Wen-Wen Zhou
Metabolites.2023; 13(4): 551. CrossRef - Inhibitory effects of epiphytic Kluyveromyces marxianus from Indian senna (Cassia angustifolia Vahl.) on growth and aflatoxin production of Aspergillus flavus
Subramani Natarajan, Dananjeyan Balachandar, Vaikuntavasan Paranidharan
International Journal of Food Microbiology.2023; 406: 110368. CrossRef - Genetic diversity, plant growth promotion potential, and antimicrobial activity of culturable endophytic actinobacteria isolated from Aconitum carmichaelii Debeaux
Lan Zou, Yaopeng Zhang, Qian Wang, Siyu Wang, Muyi Li, Jing Huang
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Zahoor Ul Hassan, Safa Oufensou, Randa Zeidan, Quirico Migheli, Samir Jaoua
Biocontrol Science and Technology.2023; 33(6): 499. CrossRef - Volatile Organic Compounds: A Review of Their Current Applications as Pest Biocontrol and Disease Management
Rosario Razo-Belman, César Ozuna
Horticulturae.2023; 9(4): 441. CrossRef - Antagonistic effects of volatile organic compounds of Saccharomyces cerevisiae NJ-1 on the growth and toxicity of Aspergillus flavus
Ting Yang, Chengzhong Wang, Chenjie Li, Rui Sun, Mingguan Yang
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Efficacy of volatile compounds from
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- Characterization of the velvet regulators in Aspergillus flavus
-
Tae-Jin Eom , Heungyun Moon , Jae-Hyuk Yu , Hee-Soo Park
-
J. Microbiol. 2018;56(12):893-901. Published online October 25, 2018
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DOI: https://doi.org/10.1007/s12275-018-8417-4
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292
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Abstract
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Fungal development and secondary metabolism are closely
associated via the activities of the fungal NK-kB-type velvet
regulators that are highly conserved in filamentous fungi.
Here, we investigated the roles of the velvet genes in the aflatoxigenic
fungus Aspergillus flavus. Distinct from other Aspergillus
species, the A. flavus genome contains five velvet genes,
veA, velB, velC, velD, and vosA. The deletion of velD blocks
the production of aflatoxin B1, but does not affect the formation
of sclerotia. Expression analyses revealed that vosA and
velB mRNAs accumulated at high levels during the late phase
of asexual development and in conidia. The absence of vosA
or velB decreased the content of conidial trehalose and the
tolerance of conidia to the thermal and UV stresses. In addition,
double mutant analyses demonstrated that VosA and
VelB play an inter-dependent role in trehalose biosynthesis
and conidial stress tolerance. Together with the findings of
previous studies, the results of the present study suggest that
the velvet regulators play the conserved and vital role in sporogenesis,
conidial trehalose biogenesis, stress tolerance, and
aflatoxin biosynthesis in A. flavus.
-
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J. Microbiol. 2018;56(5):356-364. Published online May 2, 2018
-
DOI: https://doi.org/10.1007/s12275-018-7349-3
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379
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Abstract
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Aspergillus flavus often invade many important corps and
produce harmful aflatoxins both in preharvest and during
storage stages. The regulation mechanism of aflatoxin biosynthesis
in this fungus has not been well explored mainly
due to the lack of an efficient transformation method for
constructing a genome-wide gene mutant library. This challenge
was resolved in this study, where a reliable and efficient
Agrobacterium tumefaciens-mediated transformation (ATMT)
protocol for A. flavus NRRL 3357 was established. The results
showed that removal of multinucleate conidia, to collect
a homogenous sample of uninucleate conidia for use as the
transformation material, is the key step in this procedure.
A. tumefaciens strain AGL-1 harboring the ble gene for zeocin
resistance under the control of the gpdA promoter from
A. nidulans is suitable for genetic transformation of this fungus.
We successfully generated A. flavus transformants with
an efficiency of ~ 60 positive transformants per 106 conidia
using our protocol. A small-scale insertional mutant library
(~ 1,000 mutants) was constructed using this method and
the resulting several mutants lacked both production of conidia
and aflatoxin biosynthesis capacity. Southern blotting
analysis demonstrated that the majority of the transformants
contained a single T-DNA insert on the genome. To the best
of our knowledge, this is the first report of genetic transformation
of A. flavus via ATMT and our protocol provides an
effective tool for construction of genome-wide gene mutant
libraries for functional analysis of important genes in A.
flavus.
-
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Firew Tafesse Mamo , Bo Shang , Jonathan Nimal Selvaraj , Yan Wang , Yang Liu
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J. Microbiol. 2018;56(2):119-127. Published online February 2, 2018
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DOI: https://doi.org/10.1007/s12275-018-7144-1
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336
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Abstract
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Important staple foods (peanuts, maize and rice) are susceptible
to contamination by aflatoxin (AF)-producing fungi such
as Aspergillus flavus. The objective of this study was to explore
non-aflatoxin-producing (atoxigenic) A. flavus strains
as biocontrol agents for the control of AFs. In the current
study, a total of 724 A. flavus strains were isolated from different
regions of China. Polyphasic approaches were utilized
for species identification. Non-aflatoxin and non-cyclopiazonic
acid (CPA)-producing strains were further screened
for aflatoxin B1 (AFB1) biosynthesis pathway gene clusters
using a PCR assay. Strains lacking an amplicon for the regulatory
gene aflR were then analyzed for the presence of the
other 28 biosynthetic genes. Only 229 (32%) of the A. flavus
strains were found to be atoxigenic. Smaller (S) sclerotial phenotypes
were dominant (51%) compared to large (L, 34%) and
non-sclerotial (NS, 15%) phenotypes. Among the atoxigenic
strains, 24 strains were PCR-negative for the fas-1 and aflJ
genes. Sixteen (67%) atoxigenic A. flavus strains were PCRnegative
for 10 or more of the biosynthetic genes. Altogether,
18 new PCR product patterns were observed, indicating great
diversity in the AFB1 biosynthesis pathway. The current study
demonstrates that many atoxigenic A. flavus strains can be
isolated from different regions of China. In the future laboratory
as well as field based studies are recommended to test
these atoxigenic strains as biocontrol agents for aflatoxin
contamination.
-
Citations
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Perng-Kuang Chang
Fungal Genetics and Biology.2024; 170: 103863. CrossRef - The biodiversity of Aspergillus flavus in stored rice grain leads to a decrease in the overall aflatoxin B1 production in these species
Song Tan, Fang Ma, Yajie Wu, Yuancheng Xu, Ajuan Niu, Yuping Chen, Guangyu Wang, Weifen Qiu
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Xiangrong Chen, Mohamed F. Abdallah, Sofie Landschoot, Kris Audenaert, Sarah De Saeger, Xiangfeng Chen, Andreja Rajkovic
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- Mycobiota of ground red pepper and their aflatoxigenic potential
-
Hyeonheui Ham , Sosoo Kim , Min-Hee Kim , Soohyung Lee , Sung Kee Hong , Jae-Gee Ryu , Theresa Lee
-
J. Microbiol. 2016;54(12):832-837. Published online November 26, 2016
-
DOI: https://doi.org/10.1007/s12275-016-6480-2
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329
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22
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Abstract
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To investigate contamination of ground red pepper with fungi
and mycotoxin, we obtained 30 ground red pepper samples
from 15 manufacturers in the main chili-pepper-producing
areas in Korea. Fungal contamination was evaluated by spreading
diluted samples on potato dextrose agar plates. The total
fungi counts ranged from 0 to 7.3 × 103 CFU/g. In the samples,
the genus Aspergillus had the highest incidence, while
Paecilomyces was isolated most frequently. The next most
frequent genera were Rhizopus, Penicillium, Cladosporium,
and Alternaria. Within Aspergillus, A. ruber was predominant,
followed by A. niger, A. amstelodami, A. ochraceus, A. terreus,
A. versicolor, A. flavus, and A. fumigatus. The samples were
analyzed for aflatoxins, ochratoxin A, and citrinin by ultraperfomance
liquid chromatography (UPLC) with a fluorescence
detector. Ochratoxin A was detected from three samples
at 1.03‒2.08 μg/kg, whereas no aflatoxins or citrinin were
detected. To test the potential of fungal isolates to produce
aflatoxin, we performed a PCR assay that screened for the
norB-cypA gene for 64 Aspergillus isolates. As a result, a single
800-bp band was amplified from 10 A. flavus isolates, and
one Aspergillus sp. isolate. UPLC analyses confirmed aflatoxin
production by nine A. flavus isolates and one Aspergillus
sp. isolate, which produced total aflatoxins at 146.88‒909.53
μg/kg. This indicates that continuous monitoring of ground
red pepper for toxigenic fungi is necessary to minimize mycotoxin
contamination.
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Reviews
- REVIEW] Recent advances in the understanding of the Aspergillus fumigatus cell wall
-
Mark J. Lee , Donald C. Sheppard
-
J. Microbiol. 2016;54(3):232-242. Published online February 27, 2016
-
DOI: https://doi.org/10.1007/s12275-016-6045-4
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428
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59
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Abstract
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Over the past several decades, research on the synthesis and
organization of the cell wall polysaccharides of Aspergillus
fumigatus has expanded our knowledge of this important
fungal structure. Besides protecting the fungus from environmental
stresses and maintaining structural integrity of
the organism, the cell wall is also the primary site for interaction
with host tissues during infection. Cell wall polysaccharides
are important ligands for the recognition of fungi
by the innate immune system and they can mediate potent
immunomodulatory effects. The synthesis of cell wall polysaccharides
is a complicated process that requires coordinated
regulation of many biosynthetic and metabolic pathways.
Continuous synthesis and remodeling of the polysaccharides
of the cell wall is essential for the survival of the
fungus during development, reproduction, colonization and
invasion. As these polysaccharides are absent from the human
host, these biosynthetic pathways are attractive targets
for antifungal development. In this review, we present recent
advances in our understanding of Aspergillus fumigatus cell
wall polysaccharides, including the emerging role of cell
wall polysaccharides in the host-pathogen interaction.
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- REVIEW] Developmental regulators in Aspergillus fumigatus
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Hee-Soo Park , Jae-Hyuk Yu
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J. Microbiol. 2016;54(3):223-231. Published online February 27, 2016
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DOI: https://doi.org/10.1007/s12275-016-5619-5
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Abstract
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The filamentous fungus Aspergillus fumigatus is the most prevalent
airborne fungal pathogen causing severe and usually
fatal invasive aspergillosis in immunocompromised patients.
This fungus produces a large number of small hydrophobic
asexual spores called conidia as the primary means of reproduction,
cell survival, propagation, and infectivity. The initiation,
progression, and completion of asexual development
(conidiation) is controlled by various regulators that govern
expression of thousands of genes associated with formation
of the asexual developmental structure conidiophore, and
biogenesis of conidia. In this review, we summarize key regulators
that directly or indirectly govern conidiation in this
important pathogenic fungus. Better understanding these
developmental regulators may provide insights into the improvement
in controlling both beneficial and detrimental
aspects of various Aspergillus species.
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- Minireview] The molecular mechanism of azole resistance in Aspergillus fumigatus: from bedside to bench and back
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Xiaolei Wei , Yuanwei Zhang Zhang , Ling Lu
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J. Microbiol. 2015;53(2):91-99. Published online January 28, 2015
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DOI: https://doi.org/10.1007/s12275-015-5014-7
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Abstract
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The growing use of immunosuppressive therapies has resulted
in a dramatic increased incidence of invasive fungal
infections (IFIs) caused by Aspergillus fumigatus, a common
pathogen, and is also associated with a high mortality rate.
Azoles are the primary guideline-recommended therapy agents
for first-line treatment and prevention of IFIs. However,
increased azole usage in medicinal and agricultural settings
has caused azole-resistant isolates to repeatedly emerge in
the environment, resulting in a significant threat to human
health. In this review, we present and summarize current
research on the resistance mechanisms of azoles in A. fumigatus
as well as efficient susceptibility testing methods. Moreover,
we analyze and discuss the putative clinical (bedside)
indication of these findings from bench work.
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Ayate Zakaria, Marwan Osman, Fouad Dabboussi, Rayane Rafei, Hassan Mallat, Nicolas Papon, Jean-Philippe Bouchara, Monzer Hamze
Journal of Infection and Public Health.2020; 13(1): 1. CrossRef - Genomic and Phenotypic Heterogeneity of Clinical Isolates of the Human Pathogens Aspergillus fumigatus, Aspergillus lentulus, and Aspergillus fumigatiaffinis
Renato A. C. dos Santos, Jacob L. Steenwyk, Olga Rivero-Menendez, Matthew E. Mead, Lilian P. Silva, Rafael W. Bastos, Ana Alastruey-Izquierdo, Gustavo H. Goldman, Antonis Rokas
Frontiers in Genetics.2020;[Epub] CrossRef - Azole resistance mechanisms in Aspergillus: update and recent advances
Alba Pérez-Cantero, Loida López-Fernández, Josep Guarro, Javier Capilla
International Journal of Antimicrobial Agents.2020; 55(1): 105807. CrossRef - Calcium signaling pathway is involved in non-CYP51 azole resistance in Aspergillus fumigatus
Yeqi Li, Yuanwei Zhang, Ling Lu
Medical Mycology.2019; 57(Supplement): S233. CrossRef - Fungal cytochrome P450 protein Cyp51: What we can learn from its evolution, regulons and Cyp51-based azole resistance
Jinxing Song, Shizhu Zhang, Ling Lu
Fungal Biology Reviews.2018; 32(3): 131. CrossRef - Identification and Characterization of Key Charged Residues in the Cofilin Protein Involved in Azole Susceptibility, Apoptosis, and Virulence of Aspergillus fumigatus
Zhongyi Lu, Xiaodong Jia, Yong Chen, Xuelin Han, Fangyan Chen, Shuguang Tian, Xueting Su, Zongwei Li, Jingya Zhao, Xi Zhang, Mandong Hu, Liuyu Huang, Li Han
Antimicrobial Agents and Chemotherapy.2018;[Epub] CrossRef -
Aspergillus fumigatus
Afssn3-Afssn8
Pair Reverse Regulates Azole Resistance by Conferring Extracellular Polysaccharide, Sphingolipid Pathway Intermediates, and Efflux Pumps to Biofilm
Nanbiao Long, Liping Zeng, Shanlei Qiao, Lei Li, Guowei Zhong
Antimicrobial Agents and Chemotherapy.2018;[Epub] CrossRef -
Screening and Characterization of a Non-
cyp51A
Mutation in an
Aspergillus fumigatus cox10
Strain Conferring Azole Resistance
Xiaolei Wei, Peiying Chen, Rongsui Gao, Yeqi Li, Anxue Zhang, Feifei Liu, Ling Lu
Antimicrobial Agents and Chemotherapy.2017;[Epub] CrossRef - A Putative Mitochondrial Iron Transporter MrsA in Aspergillus fumigatus Plays Important Roles in Azole-, Oxidative Stress Responses and Virulence
Nanbiao Long, Xiaoling Xu, Hui Qian, Shizhu Zhang, Ling Lu
Frontiers in Microbiology.2016;[Epub] CrossRef - Highly efficient CRISPR mutagenesis by microhomology-mediated end joining in Aspergillus fumigatus
Chi Zhang, Xiuhua Meng, Xiaolei Wei, Ling Lu
Fungal Genetics and Biology.2016; 86: 47. CrossRef - Triazole Susceptibilities in Thermotolerant Fungal Isolates from Outdoor Air in the Seoul Capital Area in South Korea
Seungeun Lee, Siyu Xu, Chemmeri Padasseri Bivila, Hyeyoung Lee, Myung Soo Park, Young Woon Lim, Naomichi Yamamoto, Kap-Hoon Han
PLOS ONE.2015; 10(9): e0138725. CrossRef
Research Support, Non-U.S. Gov'ts
- Negative regulation of the vacuole-mediated resistance to K+ stress by a novel C2H2 zinc finger transcription factor encoded by aslA in Aspergillus nidulans
-
Dong Soo Park , Yeong Man Yu , Yong Jin Kim , Pil Jae Maeng
-
J. Microbiol. 2015;53(2):100-110. Published online January 28, 2015
-
DOI: https://doi.org/10.1007/s12275-015-4701-8
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361
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0
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18
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Abstract
-
In fungi and plants, vacuoles function as a storage and sequestration
vessel for a wide variety of ions and are responsible
for cytosolic ion homeostasis and responses to ionic
shock. In the filamentous fungus Aspergillus nidulans, however,
little is known about the molecular genetic mechanisms
of vacuolar biogenesis and function. In the present study,
we analyzed the function of the aslA gene (AN5583) encoding
a novel C2H2-type zinc finger transcription factor (TF)
in relation to K+ stress resistance, vacuolar morphology, and
vacuolar transporters. The mutant lacking aslA showed increased
mycelial growth and decreased branching at high
K+ concentrations. Deletion of aslA also caused elevated K+
stress-inducible expression of the genes, nhxA (AN2288),
vnxA (AN6986), and vcxA (AN0471), encoding putative endosomal
and vacuolar cation/H+ exchangers, as well as cpyA
and vpsA genes encoding the proteins involved in vacuolar
biogenesis. Interestingly, vacuolar fragmentation induced by
K+ stress was alleviated by aslA deletion, resulting in persistence
of unfragmented vacuoles. In the presence of bafilomycin,
an inhibitor of vacuolar H+-ATPase, the mutant phenotype
was suppressed in terms of growth rates and vacuolar
morphology. These results together suggest that the C2H2-
type zinc finger TF AslA attenuates the K+ stress-inducible
expression of the genes encoding the ion pumps involved in
vacuolar sequestration of K+ ions powered by vacuolar H+-
ATPase, as well as the proteins that function in vacuolar
biogenesis.
-
Citations
Citations to this article as recorded by

-
The hyphae-specific C
2
H
2
transcription factor HscA regulates development, stress response, and mycotoxin production in
Aspergillus
species
Ye-Eun Son, Kyu-Hyun Kim, He-Jin Cho, Jae-Hyuk Yu, Hee-Soo Park, Aaron P. Mitchell
mSphere.2025;[Epub] CrossRef - Molecular circuit between Aspergillus nidulans transcription factors MsnA and VelB to coordinate fungal stress and developmental responses
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Xiaoyi Chen, Juan P. Moran Torres, Peter Jan Vonk, J. Mirjam A. Damen, Karli R. Reiding, Jan Dijksterhuis, Luis G. Lugones, Han A.B. Wösten
Fungal Genetics and Biology.2024; 172: 103894. CrossRef - Survival Factor A (SvfA) Contributes to Aspergillus nidulans Pathogenicity
Joo-Yeon Lim, Ye-Eun Jung, Hye-Eun Hwang, Cheol-Hee Kim, Nese Basaran-Akgul, Sri Harshini Goli, Steven P. Templeton, Hee-Moon Park
Journal of Fungi.2023; 9(2): 143. CrossRef - A C2H2 Zinc Finger Protein PlCZF1 Is Necessary for Oospore Development and Virulence in Peronophythora litchii
Honghui Zhu, Junjian Situ, Tianfang Guan, Ziyuan Dou, Guanghui Kong, Zide Jiang, Pinggen Xi
International Journal of Molecular Sciences.2022; 23(5): 2733. CrossRef - The Gβ-like Protein AfCpcB Affects Sexual Development, Response to Oxidative Stress and Phagocytosis by Alveolar Macrophages in Aspergillus fumigatus
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Rehab Abdelmonem Mohamed, Chong‐Tao Guo, Si‐Yuan Xu, Sheng‐Hua Ying, Ming‐Guang Feng
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- Characterization of NpgA, a 4'-phosphopantetheinyl transferase of Aspergillus nidulans, and evidence of its involvement in fungal growth and formation of conidia and cleistothecia for development
-
Jung-Mi Kim , Ha-Yeon Song , Hyo-Jin Choi , Kum-Kang So , Dae-Hyuk Kim , Keon-Sang Chae , Dong-Min Han , Kwang-Yeop Jahng
-
J. Microbiol. 2015;53(1):21-31. Published online January 4, 2015
-
DOI: https://doi.org/10.1007/s12275-015-4657-8
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387
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1
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12
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Abstract
PDF
-
The null pigmentation mutant (npgA1) in Aspergillus nidulans
results
in a phenotype with colorless organs, decreased branching
growth, delayed of asexual spore development, and
aberrant cell wall structure. The npgA gene was isolated from
A. nidulans to investigate these pleiomorphic phenomena of
npgA1 mutant. Sequencing analysis of the complementing
gene indicated that it contained a 4-phosphopantetheinyl
transferase (PPTase) superfamily domain. Enzymatic assay
of the PPTase, encoded by the npgA gene, was implemented
in vivo and in vitro. Loss-of-function of LYS5, which encoded
a PPTase in Saccharomyces cerevisiae, was functionally complemented
by NpgA, and Escherichia coli-derived NpgA revealed
phosphopantetheinylation activity with the elaboration
of 35-ADP. Deletion of the npgA gene caused perfectly
a lethal phenotype and the absence of asexual/sexual sporulation
and secondary metabolites such as pigments in A.
nidulans. However, a cross feeding effect with A. nidulans wild
type allowed recovery from deletion defects, and phased-culture
filtrate from the wild type were used to verify that the
npgA gene was essential for formation of metabolites needed
for development as well as growth. In addition, forced expression
of npgA promoted the formation of conidia and cleistothecia
as well as growth. These results indicate that the
npgA gene is involved in the phosphopantetheinylation required
for primary biological processes such as growth,
asexual/sexual development, and the synthesis of secondary
metabolites in A. nidulans.
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- Mycoflora Dynamics Analysis of Korean Traditional Wheat-based Nuruk
-
Jyotiranjan Bal , Suk-Hyun Yun , Ha-Yeon Song , Soo-Hwan Yeo , Jae Hyun Kim , Jung-Mi Kim , Dae-Hyuk Kim
-
J. Microbiol. 2014;52(12):1025-1029. Published online November 29, 2014
-
DOI: https://doi.org/10.1007/s12275-014-4620-0
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407
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0
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25
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Abstract
PDF
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The growing popularity of traditional Korean alcoholic beverages
has led to a demand for quality enhancement of the
traditional starter culture nuruk, which consists primarily
of wheat. Therefore, this study focused on mycoflora characterization
and the temporal variations in traditional wheatbased
nuruks fermented at two representative traditional temperature
conditions for 30 days. Nuruk A was fermented at a
constant temperature of 36°C for 30 days and nuruk B was
fermented at a high initial temperature of 45°C for 10 days
followed by 35°C for 20 days. The average mycoflora load in
the two different nuruk conditions did not vary significantly
between the 0 and 30 day cultures, and a maximum load of
8.39 log CFU/g was observed for nuruk A on culture day 3
and 7.87 log CFU/g for nuruk B on culture day 30. Within two
samples, pH was negatively correlated with temporal changes
in mycoflora load. The pH of nuruk A was significantly lower
than that of nuruk B at all of the time points evaluated. Culture-
dependent characterization led to the identification of
55 fungal isolates belonging to 9 genera and 15 species, with
the most prominent genera comprising Lichtheimia, Penicillium,
Trametes, Aspergillus, Rhizomucor, and Mucor. A total
of 25 yeast isolates were characterized belonging to 6 genera
and 7 species, the most prominent among which were Rhodotorula,
Pichia, Debaryomyces, Saccharomycopsis, and Torulospora.
Mycofloral community dynamics analysis revealed
that both samples A and B varied considerably with respect
to the fungal communities over a span of 30 days.
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- Transcriptional Regulation of fksA, a β-1,3-Glucan Synthase Gene, by the APSES Protein StuA during Aspergillus nidulans Development
-
Bum-Chan Park , Yun-Hee Park , Soohyun Yi , Yu Kyung Choi , Eun-Hye Kang , Hee-Moon Park
-
J. Microbiol. 2014;52(11):940-947. Published online October 31, 2014
-
DOI: https://doi.org/10.1007/s12275-014-4517-y
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339
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13
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Abstract
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The temporal and spatial regulation of β-1,3-glucan synthesis plays an important role in morphogenesis during fungal growth and development. Northern blot analysis showed that the transcription of fksA, the gene encoding β-1,3-glucan synthase in Aspergillus nidulans, was cell-cycle-dependent and increased steadily over the duration of the vegetative period, but its overall expression during the asexual and sexual stages was fairly constant up until the time of transcription cessation. In an A. nidulans strain mutated in the eukaryotic bHLH-like APSES transcription factor stuA1, the transcriptional level of fksA, and consequently the content of alkali-insoluble cell wall β-glucan, significantly increased at the conidial chain formation and maturation stage. Electrophoretic mobility shift assays revealed that StuA was bound to StREs (StuA Response Elements) on the fksA promoter region. Promoter analysis with sGFP-fusion constructs also indicated the negative regulation of fksA expression by StuA, especially during asexual development. Taken together, these
data suggest that StuA plays an important role in cell wall biogenesis during the development of A. nidulans, by controlling the transcription level of fksA.
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Yu Kyung Choi, Eun-Hye Kang, Hee-Moon Park
Mycobiology.2014; 42(4): 422. CrossRef
Review
- MINIREVIEW] The Potential Hazards of Aspergillus sp. in Foods and Feeds, and the Role of Biological Treatment: A Review
-
Sheikh Imranudin Sheikh-Ali , Akil Ahmad , Siti-Hamidah Mohd-Setapar , Zainul Akmal Zakaria , Norfahana Abdul-Talib , Aidee Kamal Khamis , Md Enamul Hoque
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J. Microbiol. 2014;52(10):807-818. Published online October 1, 2014
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DOI: https://doi.org/10.1007/s12275-014-4294-7
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351
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Abstract
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The contamination of food and feed by Aspergillus has become
a global issue with a significant worldwide economic
impact. The growth of Aspergillus is unfavourable to the
development of food and feed industries, where the problems
happen mostly due to the presence of mycotoxins, which is a
toxic metabolite secreted by most Aspergillus groups. Moreover,
fungi can produce spores that cause diseases, such as
allergies and asthma, especially to human beings. High temperature,
high moisture, retarded crops, and poor food storage
conditions encourage the growth of mold, as well as
the development of mycotoxins. A variety of chemical, biological,
and physical strategies have been developed to control
the production of mycotoxins. A biological approach,
using a mixed culture comprised of Saccharomyces cerevisiae
and Lactobacillus rhamnosus resulted in the inhibition of the
growth of fungi when inoculated into fermented food. The
results
reveal that the mixed culture has a higher potential
(37.08%) to inhibit the growth of Aspergillus flavus (producer
of Aflatoxin) compared to either single culture, L. rhamnosus
NRRL B-442 and S. cerevisiae, which inhibit the growth by
63.07% and 64.24%, respectively.
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Journal Article
- The Observation of PlcA Mutation and Localization in Aspergillus nidulans
-
Chun-Seob Ahn , Young Taek Oh , Jeong-Geun Kim , Kap-Hoon Han , Chang-Won Lee , Jae Won Kim
-
J. Microbiol. 2014;52(7):590-596. Published online June 28, 2014
-
DOI: https://doi.org/10.1007/s12275-014-3651-x
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335
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2
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Abstract
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To know the function of the plcA gene, which encodes a putative phosphoinositide-specific phospholipase C, in a model filamentous fungus Aspergillus nidulans, it was disrupted thorough homologous recombination and examined. The germination rate of ΔplcA was reduced by approximately 65% and germination of ΔplcA at a lower temperature (25°C) was much slower than germination under normal conditions (37°C), suggesting the plcA is responsible for cold-sensitivity. The hyphal growth of ΔplcA was slightly reduced at 37°C and conspicuously reduced at 25°C. While germinating ΔplcA formed giant swollen spores, and generated short and thick hyphae. The results of the nuclear examination of ΔplcA showed nuclear division with missegregation, and the rate of nuclear division was lower than that of wild type at both 25°C and 37°C. The results of this study showed that plcA is localized to the nucleus through intracellular calcium signaling in A. nidulans. The abnormal nuclear division, resulting from plcA gene deletion, affects conidiation in asexual development. Taken together, these results suggested that plcA is required for normal vegetative growth, morphogenesis, conidiation, and nuclear division
in A. nidulans.
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- Regulators of the Asexual Life Cycle of Aspergillus nidulans
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Frontiers in Microbiology.2019;[Epub] CrossRef
Research Support, Non-U.S. Gov't
- Molecular Characterization of Atoxigenic Aspergillus flavus Isolates Collected in China
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Dandan Wei , Lu Zhou , Jonathan Nimal Selvaraj , Chushu Zhang , Fuguo Xing , Yueju Zhao , Yan Wang , Yang Liu
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J. Microbiol. 2014;52(7):559-565. Published online May 30, 2014
-
DOI: https://doi.org/10.1007/s12275-014-3629-8
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320
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25
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Abstract
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Aspergillus flavus strains were isolated from peanut fields of Liaoning, Shandong, Hubei and Guangdong Provinces in China, and identified through phenotypic and molecular approaches. Of the 323 A. flavus strains isolated, 76 strains did not produce aflatoxins detectable by UPLC. The incidence of atoxigenic A. flavus strains decreased with increase in temperature and increased with increase in latitude in different geographical locations. Amplification of all the aflatoxin genes in the aflatoxin gene cluster in the atoxigenic isolates showed that there were 25 deletion patterns (A-Y), with 22 deletion patterns identified for the first time. Most of the atoxigenic A. flavus isolates with gene deletions (97%) had deletions in at least one of the four genes (aflT, nor-1, aflR, and hypB), indicating that these four genes could be targeted for rapid identification of atoxigenic strains. The atoxigenic isolates with gene deletions, especially the isolates with large deletions, are potential candidates for aflatoxin control.
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Journal Article
- Production of an Endoinulinase from Aspergillus niger AUMC 9375, by Solid State Fermentation of Agricultural Wastes, with Purification and Characterization of the Free and Immobilized Enzyme
-
Manal M. Housseiny
-
J. Microbiol. 2014;52(5):389-398. Published online May 9, 2014
-
DOI: https://doi.org/10.1007/s12275-014-3561-y
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377
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15
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Abstract
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Two different substrates, sunflower (Helianthus annuus L.) tubers and lettuce (Lactuca sativa) roots, were tested. Using a mixture of both wastes resulted in higher production of endoinulinase than either waste alone. Also, ten fungal spe-cies grown on these substrates as inexpensive, carbon sour-ces were screened for the best production of endoinulinase activities. Of these, Aspergillus niger AUMC 9375 was the most productive, when grown on the mixture using a 6:1 w/w ratio of sun flower: lettuce, and yielded the highest levels of inulinase at 50% moisture, 30°C, pH 5.0, with seven days of incubation, and with yeast extract as the best nitrogen source. Inulinase was purified to homogeneity by ion-exchange chro-matography and gel-filtration giving a 51.11 fold purification. The mixture of sunflower tubers and lettuce roots has poten-tial to be an effective and economical substrate for inulinase production. Inulinase was successfully immobilized with an immobilization yield of 71.28%. After incubation for 2 h at 60°C, the free enzyme activity decreased markedly to 10%, whereas that of the immobilized form decreased only to 87%. A reusability test demonstrated the durability of the immo-bilized inulinase for 10 cycles and in addition, that it could be stored for 32 days at 4°C. These results indicate that this inulinase, in the immobilized form, is a potential candidate for large-scale production of high purity fructose syrups.
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Food Research International.2022; 160: 111755. CrossRef - Solid-state fermentation enhances inulinase and invertase production by Aspergillus brasiliensis
C. Guerrero-Urrutia, T. Volke-Sepulveda, F. Figueroa-Martinez, E. Favela-Torres
Process Biochemistry.2021; 108: 169. CrossRef - Statistical optimization of solid-state fermentation for the production of fungal inulinase from apple pomace
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Deblina Das, Raja Selvaraj, M. Ramananda Bhat
Biocatalysis and Agricultural Biotechnology.2019; 22: 101363. CrossRef - Review of inulinase production using solid-state fermentation
Deblina Das, Ramananda Bhat M, Raja Selvaraj
Annals of Microbiology.2019; 69(3): 201. CrossRef - Immobilized inulinase: a new horizon of paramount importance driving the production of sweetener and prebiotics
Gerard Neeraj, Shobana Ravi, Ravindran Somdutt, ShriAishvarya Kaliyur Ravi, Vaidyanathan Vinoth Kumar
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Process Biochemistry.2017; 52: 53. CrossRef - Continuous generation of fructose from Taraxacum officinale tap root extract and inulin by immobilized inulinase in a packed-bed reactor
Hemant Kumar Rawat, Hemant Soni, Naveen Kango, C. Ganesh Kumar
Biocatalysis and Agricultural Biotechnology.2017; 9: 134. CrossRef - Biotechnological potential of microbial inulinases: Recent perspective
Hemant Kumar Rawat, Hemant Soni, Helen Treichel, Naveen Kango
Critical Reviews in Food Science and Nutrition.2017; 57(18): 3818. CrossRef - Development of heterogeneous preparation with inulinase for tubular reactor systems
M.G. Holyavka, M.P. Evstigneev, V.G. Artyukhov, V.V. Savin
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International Journal of Biological Macromolecules.2016; 85: 565. CrossRef - Production of inulinase, fructosyltransferase and sucrase from fungi on low-value inulin-rich substrates and their use in generation of fructose and fructo-oligosaccharides
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Research Support, Non-U.S. Gov'ts
- The Proportion of Non-Aflatoxigenic Strains of the Aspergillus flavus/oryzae Complex from Meju by Analyses of the Aflatoxin Biosynthetic Genes
-
Seung-Beom Hong , Mina Lee , Dae-Ho Kim , Soo-Hyun Chung , Hyeon-Dong Shin , Robert A. Samson
-
J. Microbiol. 2013;51(6):766-772. Published online December 19, 2013
-
DOI: https://doi.org/10.1007/s12275-013-3128-3
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367
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14
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Abstract
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Strains of the Aspergillus flavus/oryzae complex are frequently
isolated from meju, a fermented soybean product, that is used
as the starting material for ganjang (soy sauce) and doenjang
(soybean paste) production. In this study, we examined the
aflatoxin producing capacity of A. flavus/oryzae strains isolated
from meju. 192 strains of A. flavus/oryzae were isolated
from more than 100 meju samples collected from diverse
regions of Korea from 2008 to 2011, and the norB-cypA,
omtA, and aflR genes in the aflatoxin biosynthesis gene
cluster were analyzed. We found that 178 strains (92.7%)
belonged to non-aflatoxigenic group (Type I of norB-cypA,
IB-L-B-, IC-AO, or IA-L-B- of omtA, and AO type of aflR),
and 14 strains (7.3%) belonged to aflatoxin-producible group
(Type II of norB-cypA, IC-L-B+/B- or IC-L-B+ of omtA, and
AF type of aflR). Only 7 strains (3.6%) in the aflatoxin-producible
group produced aflatoxins on Czapek yeast-extract
medium. The aflatoxin-producing capability of A. flavus/
oryzae strains from other sources in Korea were also investigated,
and 92.9% (52/56) strains from air, 93.9% (31/33)
strains from rice straw, 91.7% (11/12) strains from soybean,
81.3% (13/16) strains from corn, 82% (41/50) strains from
peanut, and 73.2% (41/56) strains from arable soil were included
in the non-aflatoxigenic group. The proportion of
non-aflatoxigenicity of meju strains was similar to that of
strains from soybean, air and rice straw, all of which have
an effect on the fermentation of meju. The data suggest that
meju does not have a preference for non-aflatoxigenic or aflatoxin-producible strains of A. flavus/oryzae from the
environment of meju. The non-aflatoxigenic meju strains
are proposed to be named A. oryzae, while the meju strains
that can produce aflatoxins should be referred to A. flavus
in this study.
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- A Putative APSES Transcription Factor Is Necessary for Normal Growth and Development of Aspergillus nidulans
-
Ji-Yeon Lee , Lee-Han Kim , Ha-Eun Kim , Jae-Sin Park , Kap-Hoon Han , Dong-Min Han
-
J. Microbiol. 2013;51(6):800-806. Published online December 19, 2013
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DOI: https://doi.org/10.1007/s12275-013-3100-2
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332
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Abstract
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The nsdD gene encoding a GATA type transcription factor
positively controls sexual development in Aspergillus nidulans.
According to microarray data, 20 genes that were upregulated
by deleting nsdD during various life cycle stages were
randomly selected and deleted for functional analysis. None
of the mutants showed apparent changes in growth or development
compared with those of the wild-type except the
AN3154 gene that encodes a putative APSES transcription
factor and is an ortholog of Saccharomyces cerevisiae swi4.
Deleting AN3154 resulted in retarded growth and development,
and the gene was named rgdA (retared growth and
development). The rgdA deletion mutant developed a reduced
number of conidia even under favorable conditions for asexual
development. The retarded growth and development was
partially suppressed by the veA1 mutation. The conidial heads
of the mutant aborted, showing reduced and irregular shaped
phialides. Fruiting body development was delayed compared
with that in the wild-type. The mutant did not respond to
various nutritional or environmental factors that affected the
development patterns. The rgdA gene was expressed at low
levels throughout the life cycle and was not significantly affected
by several regulators of sexual and asexual development
such as nsdD, veA, stuA, or brlA. However, the rgdA gene
affected brlA and abaA expression, which function as key
regulators of asexual sporulation, suggesting that rgdA functions
upstream of those genes.
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- NOTE] Aspergillus cibarius sp. nov., from Traditional Meju in Korea
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Seung-Beom Hong , Mina Lee , Dae-Ho Kim , Martin Meijer , Eline Majoor , Patricia A. vanKuyk , Robert A. Samson
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J. Microbiol. 2012;50(4):712-714. Published online August 25, 2012
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DOI: https://doi.org/10.1007/s12275-012-2347-3
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208
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Aspergillus cibarius sp. nov. isolated from meju, a brick of dried fermented soybeans in Korea, is described. The species was also found from black bean, bread and salami in the Netherlands. It is characterized by abundant yellow to reddish brown ascomata and small lenticular ascospores (4.5–5.5 μm) with a wide furrow, low equatorial crests and tuberculate or reticulate convex surface. The species was resolved as phylogenetically distinct from the other reported Aspergillus species with an Eurotium teleomorph based on multilocus sequence typing using partial fragments of the β-tubulin, calmodulin, ITS and RNA polymerase II genes.
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- NOTE] Isolation and Characterization of Self-Fertile Suppressors from the Sterile nsdD Deletion Mutant of Aspergillus nidulans
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Dong-Beom Lee , Lee Han Kim , Jin-Pyo Kim , Kap-Hoon Han , Dong-Min Han
-
J. Microbiol. 2011;49(6):1054-1057. Published online December 28, 2011
-
DOI: https://doi.org/10.1007/s12275-011-1111-4
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195
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To identify downstream and/or interactive factors of the nsdD gene, which encodes a positive regulator of sexual development of Aspergillus nidulans, suppressor mutants displaying a self-fertile phenotype were isolated from a sterile nsdD deletion mutant. At least five different loci (sndA-E) were identified and genetically analyzed. In the nsdD+ background, most of the suppressors showed a marked increment of sexual development, even under the stress conditions that normally inhibited sexual development. The common phenotype of the suppressor mutants suggested the involvement of the snd genes in the negative regulation of sexual development in response to the environmental factors.
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- Inactivation of the global regulator LaeA in Monascus ruber results in a species-dependent response in sporulation and secondary metabolism
Qingpei Liu, Li Cai, Yanchun Shao, Youxiang Zhou, Mu Li, Xiaohong Wang, Fusheng Chen
Fungal Biology.2016; 120(3): 297. CrossRef - A putative APSES transcription factor is necessary for normal growth and development of Aspergillus nidulans
Ji-Yeon Lee, Lee-Han Kim, Ha-Eun Kim, Jae-Sin Park, Kap-Hoon Han, Dong-Min Han
Journal of Microbiology.2013; 51(6): 800. CrossRef - Isolation and Characterization of the gtfA Gene Encoding GAL4-Like Transcription Factor in Aspergillus nidulans
Jae-Sin Park, Dong-Min Han
The Korean Journal of Microbiology.2013; 49(1): 8. CrossRef
- The MpkB MAP Kinase Plays a Role in Post-karyogamy Processes as well as in Hyphal Anastomosis During Sexual Development in Aspergillus nidulans
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Sang-Cheol Jun , Sei-Jin Lee , Hyun-Joo Park , Ji-Young Kang , Young-Eun Leem , Tae-Ho Yang , Mi-Hee Chang , Jung-Mi Kim , Seung-Hwan Jang , Hwan-Gyu Kim , Dong-Min Han , Keon-Sang Chae , Kwang-Yeop Jahng
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J. Microbiol. 2011;49(3):418-430. Published online June 30, 2011
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DOI: https://doi.org/10.1007/s12275-011-0193-3
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261
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Two genes encoding MAP kinase homologs, designated as mpkB and mpkC, were isolated from Aspergillus nidulans by PCR with degenerate primers. Deletion and over-expression mutants of mpkC showed no detectable phenotypes under any external stress tested. Deletion of mpkB caused pleiotropic phenotypes including a failure in forming cleistothecia under any induction conditions for sexual development, increased Hülle cell production, slow hyphal growth and aberrant conidiophore morphology. Over-expression of mpkB led to increased cleistothecium production. While the transcripts of mpkB and mpkC were constitutively synthesized through the entire life cycle, their size and amount differed with developmental stages. An outcross test using fluorescent protein reporters showed that the mpkB deletion mutant could not form heterokaryons with wild type. Protoplast fusion experiments showed that the fusant of the mpkB mutant with wild type could undergo normal sexual development. However, heterokaryotic mycelia that were produced from a fusant between two mpkB deletion mutants could not form cleistothecia, although they did appear to form diploid nuclei. These results suggest that the MpkB MAP kinase is required for some post-karyogamy process as well as at the hyphal anastomosis stage to accomplish sexual development successfully.
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Journal Articles
- Organic Acids Associated with Saccharification of Cellulosic Wastes During Solid-State Fermentation
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Noura El-Ahmady El-Naggar , Mohammed Saad El-Hersh
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J. Microbiol. 2011;49(1):58-65. Published online March 3, 2011
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DOI: https://doi.org/10.1007/s12275-011-0288-x
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225
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Saccharification of five cellulosic wastes, i.e. rice husks, wheat bran, corn cobs, wheat straw and rice straw by three cellulytic fungi, i.e. Aspergillus glaucus MN1, Aspergillus oryzae MN2 and Penicillium purpurogenum MN3, during solid-state fermentation (SSF) was laboratory studied. Rice husks, wheat bran, and corn cobs
were selected as inducers of glucose production in the tested fungi. An incubation interval of 10 days was optimal for glucose production. Maximal activities of the cellulases FP-ase, CMC-ase, and β-glucosidase were detected during SSF of rice husks by P. purpurogenum; however, α-amylase activity (7.2 U/g) was comparatively reduced. Meanwhile, the productivities of FP-ase, CMC-ase, and β-glucosidase were high during SSF of rice husks by A. glaucus; however, they decreased during SSF of corn cobs by P. purpurogenum. Addition of rock phosphate (RP) (75 mg P2O5) decreased the pH of SSF media. (NH4)2SO4 was found to be less inducer of cellulytic enzymes, during SSF of rice husks by A. glaucus or A. oryzae; it also induced phytase production and solubilization of RP. The organic acids associated with saccharification of the wastes studied have also been investigated. The highest concentration of levulinic acid was detected (46.15 mg/g) during SSF of corn cobs by P. purpurogenum. Likewise, oxalic acid concentration was 43.20 mg/g during SSF of rice husks by P. purpurogenum.
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- Purification and Characterization of a New L-Methioninase from Solid Cultures of Aspergillus flavipes
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Ashraf S. A. El-Sayed
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J. Microbiol. 2011;49(1):130-140. Published online March 3, 2011
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DOI: https://doi.org/10.1007/s12275-011-0259-2
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237
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L-Methioninase was purified to electrophoretic homogeneity from cultures of Aspergillus flavipes using anionexchange and gel filtration chromatography by 12.1 fold compared to the crude enzyme preparation. The purified enzyme had a molecular mass of 47 kDa under denaturing conditions and an isoelectric point
of 5.8 with no structural glycosyl residues. The enzyme had optimum activity at pH 7.8 and pH stability from 6.8-8.0 at 35°C. The enzyme appeared to be catalytically stable below 40°C. The enzyme activity was strongly inhibited by DL-propargylglycine, hydroxylamine, PMSF, 2-mercaptoethanol, Hg2+, Cu2+, and
Fe2+, with slight inhibition by Triton X-100. A. flavipes L-methioninase has a higher catalytic affinity towards L-methionine (Km, 6.5 mM and Kcat, 14.1 S-1) followed by a relative demethiolating activity to L-homocysteine (Km, 12 mM and Kcat, 9.3 S-1). The enzyme has two absorption maxima at 280 and 420 nm, typical of other PLP-enzymes. Apo-L-methioninase has the ability to reconstitute its structural catalytic
state completely upon addition of 0.15 mM PLP. L-Methioninase has neither an appreciable effect on liver function, platelet aggregation, nor hemolysis of human blood. The purified L-methioninase from solid cultures of A. flavipes displayed unique biochemical and catalytic properties over the currently applied Pseudomonad
enzyme.
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Research Support, Non-U.S. Gov'ts
- NOTE] Simple Identification of veA1 Mutation in Aspergillus nidulans
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Kap-Hoon Han , Jae-Sin Park , Keon Sang Chae , Dong-Min Han
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J. Microbiol. 2010;48(6):885-887. Published online January 9, 2011
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DOI: https://doi.org/10.1007/s12275-010-0506-y
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The veA gene plays an important role in development of a homothallic filamentous fungus Aspergillus nidulans. The veA1 phenotype can be difficult to distinguish from the wild-type veA. Despite the importance of the veA allele, no efficient identification method has been reported besides DNA sequencing. Here, we present simple physiological and molecular biological ways to distinguish between the veA wild-type and veA1 allele. The novel approaches, which involve incubation in the presence of oxalic acid, polymerase chain reaction using double mismatched primers, and BstXI enzyme digestion, are simpler, faster and more cost-efficient than genome sequencing.
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- Impact of Some Environmental Factors on Growth and Production of Ochratoxin A of/by Aspergillus tubingensis, A. niger, and A. carbonarius Isolated from Moroccan Grapes
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Atar Selouane , Driss Bouya , Ahmed Lebrihi , C. Decock , Amina Bouseta
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J. Microbiol. 2009;47(4):411-419. Published online September 9, 2009
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DOI: https://doi.org/10.1007/s12275-008-0236-6
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The effects of temperature, water activity (aw), incubation time, and their combinations on radial growth and ochratoxin A (OTA) production of/by eight Aspergillus niger aggregate strains (six A. tubingensis and two A. niger) and four A. carbonarius isolated from Moroccan grapes were studied. Optimal conditions for the growth of most studied strains were shown to be at 25°C and 0.95 aw. No growth was observed at 10°C regardless of the water activity and isolates. The optimal temperature for OTA production was in the range of 25°C~30°C for A. carbonarius and 30°C~37°C for A. niger aggregate. The optimal aw for toxin production was 0.95~0.99 for A. carbonarius and 0.90~0.95 for A. niger aggregate. Mean OTA concentration produced by all the isolates of A. niger aggregate tested at all sampling times shows that maximum amount of OTA (0.24 µg/g) was produced at 37°C and 0.90 aw. However, for A. carbonarius, mean maximum amounts of OTA (0.22 µg/g) were observed at 25°C and 0.99 aw. Analysis of variance showed that the effects of all single factors (aw, isolate, temperature and incubation time) and their interactions on growth and OTA production were highly significant.
- Effect of Glycosylation on the Biochemical Properties of beta-Xylosidases from Aspergillus versicolor
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Alexandre Favarin Somera , Marita Gimenez Pereira , Luis Henrique Souza Guimaraes , Maria de Lourdes Teixeira de Moraes Polizeli , Hector Francisco Terenzi , Rosa Prazeres Melo Furriel , Joao Atilio Jorge
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J. Microbiol. 2009;47(3):270-276. Published online June 26, 2009
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DOI: https://doi.org/10.1007/s12275-008-0286-9
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315
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Aspergillus versicolor grown on xylan or xylose produces two beta-xylosidases with differences in biochemical properties and degree of glycosylation. We investigated the alterations in the biochemical properties of these beta-xylosidases after deglycosylation with Endo-H or PNGase F. After deglycosylation, both enzymes migrated faster in PAGE or SDS-PAGE exhibiting the same Rf. Temperature optimum of xylan-induced and xylose-induced beta-xylosidases was 45oC and 40oC, respectively, and 35oC after deglycosylation. The xylan- induced enzyme was more active at acidic pH. After deglycosylation, both enzymes had the same pH optimum of 6.0. Thermal resistance at 55oC showed half-life of 15 min and 9 min for xylose- and xylan-induced enzymes, respectively. After deglycosylation, both enzymes exhibited half-lives of 7.5 min. Native enzymes exhibited different responses to ions, while deglycosylated enzymes exhibited identical responses. Limited proteolysis yielded similar polypeptide profiles for the deglycosylated enzymes, suggesting a common polypeptide core with differential glycosylation apparently responsible for their biochemical and biophysical differences.
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Laura Marina Pinotti, Paulo Waldir Tardioli, Cristiane Sanchez Farinas, Gloria Fernández-Lorente, Alejandro H. Orrego, Jose M. Guisan, Benevides C. Pessela
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CAIO C.P. DE PAULA, QUIMI V. MONTOYA, LUCAS A. MEIRELLES, CRISTIANE S. FARINAS, ANDRÉ RODRIGUES, MIRNA H.R. SELEGHIM
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Reviews
- Heterotrimeric G protein signaling and RGSs in Aspergillus nidulans
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Jae-Hyuk Yu
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J. Microbiol. 2006;44(2):145-154.
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DOI: https://doi.org/2371 [pii]
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Abstract
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Heterotrimeric G proteins (G proteins) are conserved in all eukaryotes and are crucial
components sensing and relaying external cues into the cells to elicit appropriate physiological and biochemical responses. Basic units of the heterotrimeric G protein
signaling system include a G protein-coupled receptor (GPCR), a G protein composed of α, β, and γ subunits, and variety of effectors. Sequential sensitization and activation of these G protein elements translates external signals into gene expression changes, resulting in appropriate cellular behaviors. Regulators of G protein signaling (RGSs) constitute a crucial element of appropriate control of the intensity and duration of G protein signaling. For the past decade, G protein signaling and its regulation have been intensively studied in a number of model and/or pathogenic fungi and outcomes of the studies provided better understanding on the upstream regulation of vegetative growth, mating, development, virulence/pathogenicity establishment, and biosynthesis of secondary metabolites in fungi. This review focuses on the characteristics of the basic upstream G protein components and RGS proteins, and their roles controlling various aspects of biological processes in the model filamentous ascomycete fungus Aspergillus nidulans. In particular, their functions in controlling hyphal proliferation, asexual spore formation, sexual fruiting, and the mycotoxin sterigmatocystin production are discussed.
- Genomics Reveals Traces of Fungal Phenylpropanoid-flavonoid Metabolic Pathway in the F ilamentous Fungus Aspergillus oryzae
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Praveen Rao Juvvadi , Yasuyo Seshime , Katsuhiko Kitamoto
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J. Microbiol. 2005;43(6):475-486.
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DOI: https://doi.org/2302 [pii]
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Abstract
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Fungal secondary metabolites constitute a wide variety of compounds which either play a vital role in agricultural, pharmaceutical and industrial contexts, or have devastating effects on agriculture, animal and human affairs by virtue of their toxigenicity. Owing to their beneficial and deleterious characteristics, these complex compounds and the genes responsible for their synthesis have been the subjects of extensive investigation by microbiologists and pharmacologists. A majority of the fungal secondary metabolic genes are classified as type I polyketide synthases (PKS) which are often clustered with other secondary metabolism related genes. In this review we discuss on the significance of our recent discovery of chalcone synthase (CHS) genes belonging to the type III PKS superfamily in an industrially important fungus, Aspergillus oryzae. CHS genes are known to play a vital role in the biosynthesis of flavonoids in plants. A comparative genome analyses revealed the unique character of A. oryzae with four CHS-like genes (csyA, csyB, csyC and csyD) amongst other Aspergilli (Aspergillus nidulans and Aspergillus fumigatus) which contained none of the CHS-like genes. Some other fungi such as Neurospora crassa, Fusarium graminearum, Magnaporthe grisea, Podospora anserina and Phanerochaete chrysosporium also contained putative type III PKSs, with a phylogenic distinction from bacteria and plants. The enzymatically active nature of these newly discovered homologues is expected owing to the conservation in the catalytic residues across the different species of plants and fungi, and also by the fact that a majority of these genes (csyA, csyB and csyD) were expressed in A. oryzae. While this finding brings filamentous fungi closer to plants and bacteria which until recently were the only ones considered to possess the type III PKSs, the presence of putative genes encoding other principal enzymes involved in the phenylpropanoid and flavonoid biosynthesis (viz., phenylalanine ammonia-lyase, cinnamic acid hydroxylase and p-coumarate CoA ligase) in the A. oryzae genome undoubtedly prove the extent of its metabolic diversity. Since many of these genes have not been identified earlier, knowledge on their corresponding products or activities remain undeciphered. In future, it is anticipated that these enzymes may be reasonable targets for metabolic engineering in fungi to produce agriculturally and nutritionally important metabolites.
Research Support, Non-U.S. Gov'ts
- Screening of Growth- or Development-related Genes by Using Genomic Library with Inducible Promoter in Aspergillus nidulans
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Bang-Yong Lee , Sang-Yong Han , Han Gil Choi , Jee Hyun Kim , Kap-Hoon Han , Dong-Min Han
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J. Microbiol. 2005;43(6):523-528.
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DOI: https://doi.org/2295 [pii]
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Abstract
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Using the genomic library constructed at the downstream of the niiA promoter, which induces the over-expression of an inserted DNA fragment, we have attempted to screen the genes affecting growth or development by over-expression. The wild-type strain was transformed using the AMA-niiA(p) library and cultured on 1.2 M sorbitol media, in which asexual sporulation is induced, but sexual development is repressed. Over 100,000 strains transformed to pyrG+ were analyzed with regard to any changes in phenotype. Consequently, seven strains were isolated for further analyses. These strains were designated NOT [niiA(p) over-expression transformants] stains. Four of the strains were of the inducible type, and the remaining strains were of the multi-copy suppression type. Two of the inducible-type strains, NOT1 and NOT40, harbored genes which had been inserted in reverse direction, suggesting that the mutant phenotypes had been derived from an excess amount of anti-sense mRNA. Domain analyses of the deduced polypeptides from the DNA fragments rescued from the transformants revealed that NOT1, NOT40 and NOT6 harbored a LisH motif, a forkhead domain, and a Zn(II)2Cys6 binuclear zinc cluster, respectively.
- EDITORIAL] Human fungal pathogens: Why should we learn?
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Jeong-Yoon Kim
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J. Microbiol. 2016;54(3):145-148.
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DOI: https://doi.org/10.1007/s12275-016-0647-8
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495
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Abstract
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Human fungal pathogens that cause invasive infections are
hidden killers, taking lives of one and a half million people
every year. However, research progress in this field has not
been rapid enough to effectively prevent or treat life-threatening
fungal diseases. To update recent research progress
and promote more active research in the field of human fungal
pathogens, eleven review articles concerning the virulence
mechanisms and host interactions of four major human fungal
pathogens–Candida albicans, Cryptococcus neoformans,
Aspergillus fumigatus, and Histoplasma capsulatum–are
presented in this special issue.
-
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- Purification and Characterization of α-amylase from Aspergillus sp. JP-1
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Park, Hyung Nam , Yoo, Jin Cheol , Yang, Young Ki
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J. Microbiol. 1995;33(1):80-84.
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Abstract
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The α-amylase was purified from Aspergillus sp. JP-1 and some enzyme characteristics were studied. The enzyme waw approzimately purified 80-fold and an overall yield was 16.5% from the culture medium by ammonium sulfate fractionation, Sephadex G-150 gel permeation chromatography, and DEAE-Sephadex A-50 ion exchange column chromatography in order. The molecular weight of the purified α-amylase has been estimated to be 56 KDa on SDS-polyacrulamide gel electrophoresis and Sephadex G-150 chromatography. The purigied enzyme functions optimally at pH5.5 and 40℃, respectively. The Km value for soluble starch was 2.5 mg/ml. The enzymatic activity increased in the presence of Ca^2+, Co^2+, EDTA, Mg^2+, Mn^2+ and Zn^2+ and was inhibited by adding Cu^2+, Fe^2+, and Ni^2+.
- Purification of carbosymethyl cellulase from hybrid between aspergillus niger and penicillium verruculosum
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Yang, Young Ki , Lee, Jung Sup , Park, Hyung Nam , Moon, Myung Nim , Kim, Hong Sub , Kim, Jong Se , Lim, Chae Young , Rhee, Young Ha
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J. Microbiol. 1996;34(1):90-94.
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The carboxymethyl cellulase (CMCase) was purified from the induced culture filtrate of hybrid TAPW15703 between Aspergillus niger and penicillium verruculosum made by nuclear transfer. The enzyme was purified 80 fold with an overall yield 17% from the culture medium by ammonium sulfate fractionation, Sephadex G-75 gel permeation chromatography, and DEAE-ion exchange column chromatography. The molecular weight of the CMCase has estimated to be 32,000 daltons on SDS-polyacrylamide gel electrophoresis and Sephadex G-150 gel permeation chromatography. The purified enzyme functions optimally at pH 4.0 and 40℃. The Km value for carbosymethyl cellulose was 68 mM. The enzyme activity was increased by the presence of Mg^2+ and Mn^2+.
- Chemical midification of Cytosine Deaminase from Aspergillus fumigatus
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Yu, Tae Shick , Kim, Jung , Kim, Hyun Soo
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J. Microbiol. 1998;36(1):39-42.
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Essential amino acids involved in the catalytic mechanisms of cytosine deaminase from Aspergillus fumigatus IFO 5840 were determined by chemical modification studies. The enzyme was perfectly inhibited by N-bromosuccinimide, chloramines-T, pyridoxal-5’-phosphate, and p-chloromercuribenzoate. It was strongly inhibited by phenylmethyl sulfonyl fluoride, and weakly inhibited by phenylglyoxal. The inactivation of the enzyme activity by p-CMB was reversed by sulfhydryl reagents. Furthermore, activities inhibited by chloramines-T, pyridoxal-5’-phosphate, results, we speculate that tryptophan, methionine, lysine and cysteine residues are located in ornear the active center of the cytosine deaminase, while a serine is indirectly involved I the enzyme activity.
- Quantitative Analysis of Expressed Genes in Aspergillus Oryzae by Sequencing 3'-directed cDNA Clones
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Hwang, Hyun Ah , Lee, Dong Whan , Kim, Jong Hwa , Lee, Tae Kyoo , Yang, Moon Sik , Chae, Keon Sang
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J. Microbiol. 1998;36(2):111-117.
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Sequence analysis of randomly selected 3'-directed cKNA clones has been known to be one of the most powerful methods of examining the genes highly expressed in a tissue or cell type. We constructed a 3'-directed cDNA libraty from Aspergillus oryzae mycelia, and sequenced 345 randomly selected 3'-directed cDNA clones. Determined nucleotide sequences, not shorter than 30nt, were compared with one other to generate gene signatures (GSs) and were then compared with GenBank entries to analyze sequence similarity to known genes. A GS for the most highly expressed gene appeared six times, one GS five times, five GSs four times, five GSs three times and 22 GSs twice. In total, 324 clones yielded 268 GSs consisting of 34 redundant GSs appeaning at least twice and 234 solitary ones. Forty-three GSs showed similarities ranging from 60% to 99% with known sequences from Genbank. A considerable number of A. oryzae GSs mateched those obtained from the sexual structures of A. nidulans suggests that A. oryzae may not be phylogentically distant from A. nidulans and that A. oryzae may have a sexual life cycle from the ancient period.