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BipA GTPase function and abundance regulate ribosome biogenesis and envelope homeostasis during cold adaptation in Escherichia coli
Yubin Lee, Eunsil Choi, Yeonwoo Jang, Yaesol Cho, Jihwan Hwang
Received August 18, 2026  Accepted October 19, 2026  Published online November 10, 2026  
DOI: https://doi.org/10.71150/jm.2608017    [Epub ahead of print]
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BipA is a conserved ribosome-associated GTPase that supports bacterial stress adaptation. It participates in 50S ribosome assembly and envelope stress responses; however, it is not known whether both functions depend on its GTPase activity. In this study, we investigated Escherichia coli strains carrying chromosomal D74A or N128D substitutions in the conserved GTPase motifs of BipA. Both mutants displayed severe cold-sensitive growth defects that were similar to those of the ΔbipA strain. At low temperatures, 50S ribosome assembly was defective and immature ribosomal particles accumulated. Ribosome-binding analysis revealed that the mutant BipA had a lower association with ribosomal fractions. The mutants exhibited altered lipopolysaccharide profiles and envelope phenotypes, including increased capsule production, reduced biofilm formation and motility, and increased cell width and length. These phenotypes were most notable at low temperatures, indicating activation of the Rcs (Regulator of Capsule Synthesis) phosphorelay. We next examined the effects of BipA abundance on cellular physiology. BipA expression was influenced by both start-codon identity and the downstream coding context. BipA overexpression impaired growth and induced pronounced cell elongation at both optimal and low temperatures, indicating that proper control of BipA abundance is important for cellular homeostasis. Furthermore, the increased susceptibility of the ΔbipA strain to ampicillin at low temperatures suggested an association between BipA and peptidoglycan homeostasis. Together, these findings suggest that BipA GTPase function is required to maintain ribosome biogenesis and envelope homeostasis during cold adaptation, and that proper control of BipA abundance is also important for maintaining cellular physiology.

Research Support, Non-U.S. Gov't
In silico analysis and experimental validation of lipoprotein and novel Tat signal peptides processing in Anabaena sp. PCC7120
Sonika Kumari , Akhilesh Kumar Chaurasia
J. Microbiol. 2015;53(12):837-846.   Published online December 2, 2015
DOI: https://doi.org/10.1007/s12275-015-5281-3
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Signal peptide (SP) plays a pivotal role in protein translocation. Lipoprotein- and twin arginine translocase (Tat) dependent signal peptides were studied in All3087, a homolog of competence protein of Synechocystis PCC6803 and in two putative alkaline phosphatases (ALPs, Alr2234 and Alr4976), respectively. In silico analysis of All3087 is shown to possess the characteristics feature of competence proteins such as helix-hairpin-helix, N and C-terminal HKD endonuclease domain, calcium binding domain and N-terminal lipoprotein signal peptide. The SP recognition-cleavage site in All3087 was predicted (AIA-AC) using SignalP while further in-depth analysis using Pred-Lipo and WebLogo analysis for consensus sequence showed it as IAA-C. Activities of putative ALPs were confirmed by heterologous overexpression, activity assessment and zymogram analysis. ALP activity in Anabaena remains cell bound in log-phase, but during late log/stationary phase, an enhanced ALP activity was detected in extracellular milieu. The enhancement of ALP activity during stationary phase was not only due to inorganic phosphate limitation but also contributed by the presence of novel bipartite Tat-SP. The Tat signal transported the folded active ALPs to the membrane, followed by anchoring into the membrane and successive cleavage enabling transportation of the ALPs to the extracellular milieu, because of bipartite architecture and processing of transit Tat-SP.

Citations

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  • The wide world of non-mammalian phospholipase D enzymes
    Y. Wang, M.J.O. Wakelam, V.A. Bankaitis, M.I. McDermott
    Advances in Biological Regulation.2024; 91: 101000.     CrossRef
  • In silico Analysis of Different Signal Peptides for the Excretory Production of Recombinant NS3-GP96 Fusion Protein in Escherichia coli
    Shiva Mohammadi, Zohreh Mostafavi-Pour, Younes Ghasemi, Mahdi Barazesh, Soudabeh Kavousi Pour, Amir Atapour, Pooneh Mokarram, Mohammad Hossein Morowvat
    International Journal of Peptide Research and Therapeutics.2019; 25(4): 1279.     CrossRef
  • Signal Peptide Sequence Analysis of Selected Protein Sequences from Cryptosporidium parvum
    Mohd Aiman Baru, Muhammad Lokman Md , Afzan Mat Yusof
    Trends in Bioinformatics.2018; 11(1): 33.     CrossRef

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