Journal Articles
- Phylogenetic Assessment of Understudied Families in Hymenochaetales (Basidiomycota, Fungi)-Reporting Uncovered Species and Reflecting the Recent Taxonomic Updates in the Republic of Korea
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Yoonhee Cho, Dohye Kim, Young Woon Lim
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J. Microbiol. 2024;62(6):429-447. Published online May 16, 2024
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DOI: https://doi.org/10.1007/s12275-024-00120-5
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Abstract
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Hymenochaetales Oberw. is an order classified in Basidiomycota of Fungi, and species in this order display notable diversity. They exhibit various fruiting body shapes, including clavarioid, effused-reflexed, and resupinate basidiomes.
Few mycorrhizal species have been reported in Hymenochaetales, but wood-decaying species dominate the order. Hymenochaetaceae Imazeki & Toki and Schizoporaceae Jülich are the most species-rich families within Hymenochaetales, and most species in the Republic of Korea belong to these two families. As such, current taxonomic classification and nomenclature are not reflected upon species in the remaining Hymenochaetales families. For this study, a multifaceted morphological and multigenetic marker-based phylogenetic investigation was conducted to, firstly, comprehensively identify understudied Hymenochaetales specimens in Korea and, secondly, reflect the updates on the species classification. Five genetic markers were assessed for the phylogenetic analysis: nuclear small subunit ribosomal DNA (nSSU), internal transcribed spacer (ITS), nuclear large subunit ribosomal DNA (nLSU), RNA polymerase II subunit 2 gene (RPB2), and translation elongation factor 1 gene (TEF1). The results from phylogenetic analysis supported 18 species classified under eight families (excluding Hymenochaetaceae and Schizoporaceae) in Korea. Species formerly placed in Rickenellaceae and Trichaptum sensu lato have been systematically revised based on recent taxonomic reconstructions. In addition, our findings revealed one new species, Rickenella umbelliformis, and identified five formerly nationally unreported species classified under five understudied families. Our findings contribute to a better understanding of Hymenochaetales diversity and highlight the need for continued research.
- Transcriptome‑based Mining of the Constitutive Promoters for Tuning Gene Expression in Aspergillus oryzae
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Kobkul Laoteng , Jutamas Anantayanon , Chanikul Chutrakul , Sarocha Panchanawaporn , Sukanya Jeennor
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J. Microbiol. 2023;61(2):199-210. Published online February 6, 2023
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DOI: https://doi.org/10.1007/s12275-023-00020-0
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Abstract
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Transcriptional regulation has been adopted for developing metabolic engineering tools. The regulatory promoter is a crucial
genetic element for strain optimization. In this study, a gene set of Aspergillus oryzae with highly constitutive expression
across different growth stages was identified through transcriptome data analysis. The candidate promoters were functionally
characterized in A. oryzae by transcriptional control of β-glucuronidase (GUS) as a reporter. The results showed that
the glyceraldehyde triphosphate dehydrogenase promoter (PgpdA1) of A. oryzae with a unique structure displayed the most
robust strength in constitutively controlling the expression compared to the PgpdA2 and other putative promoters tested. In
addition, the ubiquitin promoter (Pubi) of A. oryzae exhibited a moderate expression strength. The deletion analysis revealed
that the 5' untranslated regions of gpdA1 and ubi with the length of 1028 and 811 nucleotides, counted from the putative
translation start site (ATG), respectively, could efficiently drive the GUS expression. Interestingly, both promoters could
function on various carbon sources for cell growth. Glucose was the best fermentable carbon source for allocating high constitutive
expressions during cell growth, and the high concentrations (6–8% glucose, w/v) did not repress their functions. It
was also demonstrated that the secondary metabolite gene coding for indigoidine could express under the control of PgpdA1
or Pubi promoter. These strong and moderate promoters of A. oryzae provided beneficial options in tuning the transcriptional
expression for leveraging the metabolic control towards the targeted products.
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- Construction of an Aspergillus oryzae △nptB△pyrG Host for Homologous Expression of Lipase and Catalytic Property Characterization of Recombinant Lipase
Yueting Zhang, Hongmei Nie, Fei Zhang, Mengmeng Jin, Zhao Wang, Jianyong Zheng
Applied Biochemistry and Biotechnology.2024;[Epub] CrossRef - Mining and Understanding of New Transcriptional Regulatory Elements from Licorice-Derived Endophyte Serratia Rubidaea W12-1
Ying Zhang, Yunyang Ma, Bing Hu, H.M. Zabed, A.K. Singh, M.A. Ibrahim, N. Chen
BIO Web of Conferences.2024; 142: 03018. CrossRef - Exploring and Engineering Novel Strong Promoters for High-Level Protein Expression in Bacillus subtilis DB104 through Transcriptome Analysis
Ji-Su Jun, Hyang-Eun Jeong, Kwang-Won Hong
Microorganisms.2023; 11(12): 2929. CrossRef - Efficient de novo production of bioactive cordycepin by Aspergillus oryzae using a food-grade expression platform
Sukanya Jeennor, Jutamas Anantayanon, Sarocha Panchanawaporn, Chanikul Chutrakul, Wanwipa Vongsangnak, Kobkul Laoteng
Microbial Cell Factories.2023;[Epub] CrossRef
- Salmonella Typhimurium ST313 isolated in Brazil revealed to be more invasive and inflammatory in murine colon compared to ST19 strains
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Amanda Aparecida Seribelli , Tamara R. Machado Ribeiro , Patrick da Silva† , Isabela Mancini Martins , Felipe Pinheiro Vilela , Marta I. Cazentini Medeiros , Kamila Chagas Peronni , Wilson Araújo da Silva Junior , Cristiano Gallina Moreira , Juliana Pfrimer Falcão
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J. Microbiol. 2021;59(9):861-870. Published online August 12, 2021
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DOI: https://doi.org/10.1007/s12275-021-1082-z
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Abstract
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Salmonella Typhimurium (ST313) has caused an epidemic of
invasive disease in sub-Saharan Africa and has been recently
identified in Brazil. As the virulence of this ST is poorly understood,
the present study aimed to (i) perform the RNAseq
in vitro of S. Typhimurium STm30 (ST313) grown in
Luria-Bertani medium at 37°C; (ii) compare it with the RNAseq
of the S. Typhimurium SL1344 (ST19) and S. Typhimurium
STm11 (ST19) strains under the same growing conditions;
and (iii) examine the colonization capacity and expression
of virulence genes and cytokines in murine colon. The
STm30 (ST313) strain exhibited stronger virulence and was
associated with a more inflammatory profile than the strains
SL1344 (ST19) and STm11 (ST19), as demonstrated by transcriptome
and in vivo assay. The expression levels of the hilA,
sopD2, pipB, and ssaS virulence genes, other Salmonella pathogenicity
islands SPI-1 and SPI-2 genes or effectors, and
genes of the cytokines IL-1β, IFN-γ, TNF-α, IL-6, IL-17, IL-22,
and IL-12 were increased during ST313 infection in C57BL/6J
mice. In conclusion, S. Typhimurium STm30 (ST313) isolated
from human feces in Brazil express higher levels of pathogenesis-
related genes at 37°C and has stronger colonization
and invasion capacity in murine colon due to its high expression
levels of virulence genes, when compared with the S.
Typhimurium SL1344 (ST19) and STm11 (ST19) strains.
STm30 (ST313) also induces stronger expression of pro-inflammatory
cytokines in this organ, suggesting that it causes
more extensive tissue damage.
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Citations
Citations to this article as recorded by

- Whole-Genome Sequencing Reveals the Population Structure and Genetic Diversity of Salmonella Typhimurium ST34 and ST19 Lineages
Zhen-xu Zhuo, Yu-lian Feng, Xi-wei Zhang, Hao Liu, Fang-yin Zeng, Xiao-yan Li
Journal of Microbiology.2024; 62(10): 859. CrossRef -
Incremental increases in physiological fluid shear progressively alter pathogenic phenotypes and gene expression in multidrug resistant
Salmonella
Jiseon Yang, Jennifer Barrila, Eric A. Nauman, Seth D. Nydam, Shanshan Yang, Jin Park, Ami D. Gutierrez-Jensen, Christian L. Castro, C. Mark Ott, Kristina Buss, Jason Steel, Anne D. Zakrajsek, Mary M. Schuff, Cheryl A. Nickerson
Gut Microbes.2024;[Epub] CrossRef - Virulence potential of Salmonella 1,4, [5],12:i:- strains isolated during decades from different sources in the Southeast region of Brazil
Giovana do Nascimento Pereira, Amanda Aparecida Seribelli, Carolina Nogueira Gomes, Felipe Pinheiro Vilela, Ludmilla Tonani, Monique Ribeiro Tiba-Casas, Marta Inês Cazentini Medeiros, Dália dos Prazeres Rodrigues, Márcia Regina von Zeska Kress, Juliana Pf
Brazilian Journal of Microbiology.2023; 54(4): 2827. CrossRef - Invasive non-typhoidal Salmonella (iNTS) aminoglycoside-resistant ST313 isolates feature unique pathogenic mechanisms to reach the bloodstream
Isabela Mancini Martins, Amanda Aparecida Seribelli, Tamara R. Machado Ribeiro, Patrick da Silva, Bruna Cardinali Lustri, Rodrigo T. Hernandes, Juliana Pfrimer Falcão, Cristiano Gallina Moreira
Infection, Genetics and Evolution.2023; 116: 105519. CrossRef - Regulator of RNase E activity modulates the pathogenicity of Salmonella Typhimurium
Jaejin Lee, Eunkyoung Shin, Ji-Hyun Yeom, Jaeyoung Park, Sunwoo Kim, Minho Lee, Kangseok Lee
Microbial Pathogenesis.2022; 165: 105460. CrossRef - Antimicrobial resistance and genetic background of non-typhoidal Salmonella enterica strains isolated from human infections in São Paulo, Brazil (2000–2019)
Aline Parolin Calarga, Marco Tulio Pardini Gontijo, Luiz Gonzaga Paula de Almeida, Ana Tereza Ribeiro de Vasconcelos, Leandro Costa Nascimento, Taíse Marongio Cotrim de Moraes Barbosa, Thalita Mara de Carvalho Perri, Silvia Regina dos Santos, Monique Ribe
Brazilian Journal of Microbiology.2022; 53(3): 1249. CrossRef
- Effect of biostimulation and bioaugmentation on hydrocarbon degradation and detoxification of diesel-contaminated soil: a microcosm study
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Patricia Giovanella , Lídia de Azevedo Duarte , Daniela Mayumi Kita , Valéria Maia de Oliveira , Lara Durães Sette
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J. Microbiol. 2021;59(7):634-643. Published online May 15, 2021
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DOI: https://doi.org/10.1007/s12275-021-0395-2
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Abstract
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Soil contamination with diesel oil is quite common during
processes of transport and storage. Bioremediation is considered
a safe, economical, and environmentally friendly approach
for contaminated soil treatment. In this context, studies
using hydrocarbon bioremediation have focused on total
petroleum hydrocarbon (TPH) analysis to assess process effectiveness,
while ecotoxicity has been neglected. Thus, this
study aimed to select a microbial consortium capable of detoxifying
diesel oil and apply this consortium to the bioremediation
of soil contaminated with this environmental pollutant
through different bioremediation approaches. Gas chromatography
(GC-FID) was used to analyze diesel oil degradation,
while ecotoxicological bioassays with the bioindicators
Artemia sp., Aliivibrio fischeri (Microtox), and Cucumis
sativus were used to assess detoxification. After 90 days of
bioremediation, we found that the biostimulation and biostimulation/
bioaugmentation approaches showed higher rates
of diesel oil degradation in relation to natural attenuation
(41.9 and 26.7%, respectively). Phytotoxicity increased in the
biostimulation and biostimulation/bioaugmentation treatments
during the degradation process, whereas in the Microtox
test, the toxicity was the same in these treatments as that
in the natural attenuation treatment. In both the phytotoxicity
and Microtox tests, bioaugmentation treatment showed lower
toxicity. However, compared with natural attenuation, this
approach did not show satisfactory hydrocarbon degradation.
Based on the microcosm experiments results, we conclude
that a broader analysis of the success of bioremediation requires
the performance of toxicity bioassays.
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Citations
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- Heavy fuel oil-contaminated soil remediation by individual and bioaugmentation-assisted phytoremediation with Medicago sativa and with cold plasma-treated M. sativa
Jūratė Žaltauskaitė, Rimas Meištininkas, Austra Dikšaitytė, Laima Degutytė-Fomins, Vida Mildažienė, Zita Naučienė, Rasa Žūkienė, Kazunori Koga
Environmental Science and Pollution Research.2024; 31(20): 30026. CrossRef - Soil Corrosivity Under Natural Attenuation
Larissa O. da Silva, Sara H. de Oliveira, Rafael G. C. da Silva, Magda R. S. Vieira, Ivanilda R. de Melo, Severino L. Urtiga Filho
Materials Research.2024;[Epub] CrossRef - Updating risk remediation-endpoints for petroleum-contaminated soils? A case study in the Ecuadorian Amazon region
Daniel Hidalgo-Lasso, Karina García-Villacís, Jeaneth Urvina Ulloa, Darwin Marín Tapia, Patricio Gómez Ortega, Frederic Coulon
Heliyon.2024; 10(9): e30395. CrossRef - Recent advances in the development and applications of luminescent bacteria–based biosensors
Yingying Li, Yuankun Zhao, Yiyang Du, Xuechun Ren, He Ding, Zhimin Wang
Luminescence.2024;[Epub] CrossRef - Oil biodegradation studies with an immobilized bacterial consortium in plant biomass for the construction of bench-scale bioreactor
Rachel M. Ferreira, Bernardo D. Ribeiro, Danielle.M.A. Stapelfeldt, Rodrigo P. do Nascimento, Maria de.F.R. Moreira
Cleaner Chemical Engineering.2023; 6: 100107. CrossRef - Application of Luminescent Bacteria Bioassay in the Detection of Pollutants in Soil
Kai Zhang, Meng Liu, Xinlong Song, Dongyu Wang
Sustainability.2023; 15(9): 7351. CrossRef - Salicylate or Phthalate: The Main Intermediates in the Bacterial Degradation of Naphthalene
Vasili M. Travkin, Inna P. Solyanikova
Processes.2021; 9(11): 1862. CrossRef
- Functional analysis of Mpk1-mediated cell wall integrity signaling pathway in the thermotolerant methylotrophic yeast Hansenula polymorpha
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Hyunah Kim , Eun Jung Thak , Ji Yoon Yeon , Min Jeong Sohn , Jin Ho Choo , Jeong-Yoon Kim , Hyun Ah Kang
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J. Microbiol. 2018;56(1):72-82. Published online January 4, 2018
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DOI: https://doi.org/10.1007/s12275-018-7508-6
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Abstract
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Understanding the characteristics and regulation mechanisms
of cell wall integrity (CWI) in yeast is important not
only for basic research but also in biotechnological applications.
We found significantly different CWIs in two representative
strains of the thermotolerant methylotrophic yeast
Hansenula polymorpha. Compared to the A16 strain (classified
as Ogataea polymorpha), the DL1-L strain (classified as
Ogataea parapolymorpha) has a thinner cell wall that was
found to be more fragile following long-term cultivation and
more sensitive to zymolyase. To gain a deeper insight into this
difference, we compared the characteristics of the Mpk1pmediated
CWI signaling pathway in the two strains. While
a DL1-L mutant deficient in Mpk1p (mpk1Δ) showed severe
growth retardation at both normal and high growth temperatures
and in the presence of cell-wall disrupting agents, the
A16 mpk1Δ mutant displayed only a mild defect in cell growth.
Sorbitol effect on rescuing growth retardation was different
in the two mpk1Δ strains, which could partly be ascribed to
subtle differences in the activation of HOG pathway. Among
the cell wall disruptors evaluated, only caffeine clearly increased
phosphorylation of Mpk1p in DL1-L, but not in A16.
A transcriptome analysis of the DL1-L strain revealed that
caffeine significantly increased the expression of a subset of
cell-wall related genes in an Mpk1p-dependent manner, but
not the expected Rlm1-target genes. Taken together, our data
support an essential role for Mpk1p in maintaining CWI in
H. polymorpha, although the requirement for Mpk1p and
its regulation under diverse stress conditions varies depending
on the strain background.
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Citations
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- Optimization, characterization, comparison of self-assembly VLP of capsid protein L1 in yeast and reverse vaccinology design against human papillomavirus type 52
Moh Egy Rahman Firdaus, Apon Zaenal Mustopa, Nurlaili Ekawati, Sheila Chairunnisa, Rosyida Khusniatul Arifah, Ai Hertati, Shasmita Irawan, Anika Prastyowati, Arizah Kusumawati, Maritsa Nurfatwa
Journal of Genetic Engineering and Biotechnology.2023; 21(1): 68. CrossRef - Characterization, expression patterns and functional analysis of PcMPK12 gene in Phytophthora capsici
Tong-tong Zhu, Sheng-han Xiang, Lei Yang, Fang Tang, Wei Li, Ying-bao Liu, Wen-xiu Sun
European Journal of Plant Pathology.2022; 164(4): 525. CrossRef - The cell wall and the response and tolerance to stresses of biotechnological relevance in yeasts
Ricardo A. Ribeiro, Nuno Bourbon-Melo, Isabel Sá-Correia
Frontiers in Microbiology.2022;[Epub] CrossRef - The damage and tolerance mechanisms of Phaffia rhodozyma mutant strain MK19 grown at 28 °C
Li-Li Miao, Shuang Chi, Ting-Ting Hou, Zhi-Pei Liu, Ying Li
Microbial Cell Factories.2021;[Epub] CrossRef - Molecular characterization of Hsf1 as a master regulator of heat shock response in the thermotolerant methylotrophic yeast Ogataea parapolymorpha
Jin Ho Choo, Su-Bin Lee, Hye Yun Moon, Kun Hwa Lee, Su Jin Yoo, Keun Pil Kim, Hyun Ah Kang
Journal of Microbiology.2021; 59(2): 151. CrossRef - Pleiotropic Effects of Caffeine Leading to Chromosome Instability and Cytotoxicity in Eukaryotic Microorganisms
Woo-Hyun Chung
Journal of Microbiology and Biotechnology.2021; 31(2): 171. CrossRef - Short bZIP homologue of sulfur regulator Met4 from Ogataea parapolymorpha does not depend on DNA‐binding cofactors for activating genes in sulfur starvation
Su Jin Yoo, Min Jeong Sohn, Da Min Jeong, Hyun Ah Kang
Environmental Microbiology.2020; 22(1): 310. CrossRef - PlMAPK10, a Mitogen-Activated Protein Kinase (MAPK) in Peronophythora litchii, Is Required for Mycelial Growth, Sporulation, Laccase Activity, and Plant Infection
Liqun Jiang, Junjian Situ, Yi Zhen Deng, Lang Wan, Dandan Xu, Yubin Chen, Pinggen Xi, Zide Jiang
Frontiers in Microbiology.2018;[Epub] CrossRef
- Alteration in the ultrastructural morphology of mycelial hyphae and the dynamics of transcriptional activity of lytic enzyme genes during basidiomycete morphogenesis
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Elena Vetchinkina , Maria Kupryashina , Vladimir Gorshkov , Marina Ageeva , Yuri Gogolev , Valentina Nikitina
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J. Microbiol. 2017;55(4):280-288. Published online January 26, 2017
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DOI: https://doi.org/10.1007/s12275-017-6320-z
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Abstract
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The morphogenesis of macromycetes is a complex multilevel process resulting in a set of molecular-genetic, physiological- biochemical, and morphological-ultrastructural changes in the cells. When the xylotrophic basidiomycetes Lentinus edodes, Grifola frondosa, and Ganoderma lucidum were grown on wood waste as the substrate, the ultrastructural morphology of the mycelial hyphal cell walls differed considerably between mycelium and morphostructures. As the macromycetes passed from vegetative to generative development, the expression of the tyr1, tyr2, chi1, chi2, exg1, exg2, and exg3 genes was acti-vated. These genes encode enzymes such as tyrosinase, chi-tinase, and glucanase, which play essential roles in cell wall growth and morphogenesis.
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- Flow modeling and structural characterization in fungal pellets
J. Sánchez-Vargas, F.J. Valdés-Parada, L. Peraza-Reyes, D. Lasseux, M.A. Trujillo-Roldán
Journal of Theoretical Biology.2024; 590: 111853. CrossRef - Transcriptome analysis provides insight into gamma irradiation delaying quality deterioration of postharvest Lentinula edodes during cold storage
Hong Gao, Shuang Ye, Yani Liu, Xiuzhi Fan, Chaomin Yin, Ying Liu, Jingyu Liu, Yu Qiao, Xueling Chen, Fen Yao, Defang Shi
Food Chemistry: Molecular Sciences.2023; 6: 100172. CrossRef - Improvement of natamycin production by controlling the morphology of Streptomyces gilvosporeus Z8 with microparticle talc in seed preculture
Chaoping Yue, Haitao Xu, Yingying Yu, Xin Yu, Min Yu, Chen Zhang, Qian You, Shaofan Xia, Zixian Ding, Hao Fu, Xin Zeng, Feng Li
Journal of Chemical Technology & Biotechnology.2021; 96(6): 1533. CrossRef - The molecular mechanism of stipe cell wall extension for mushroom stipe elongation growth
Cuicui Liu, Jingjing Bi, Liqin Kang, Jiangsheng Zhou, Xiao Liu, Zhonghua Liu, Sheng Yuan
Fungal Biology Reviews.2021; 35: 14. CrossRef - UDP-glucose pyrophosphorylase gene affects mycelia growth and polysaccharide synthesis of Grifola frondosa
Xin-Yi Zan, Xi-Hong Wu, Feng-Jie Cui, Hong-An Zhu, Wen-Jing Sun, Li-Hua Jiang, Ting-Lei Tao, Xiu Zhao
International Journal of Biological Macromolecules.2020; 161: 1161. CrossRef -
Chitinases Play a Key Role in Stipe Cell Wall Extension in the Mushroom
Coprinopsis cinerea
Jiangsheng Zhou, Liqin Kang, Cuicui Liu, Xin Niu, Xiaojun Wang, Hailong Liu, Wenming Zhang, Zhonghua Liu, Jean-Paul Latgé, Sheng Yuan, Marie A. Elliot
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Nanomaterials.2019; 9(3): 475. CrossRef - Algorithm for Physiological Interpretation of Transcriptome Profiling Data for Non-Model Organisms
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Microbial Cell Factories.2018;[Epub] CrossRef
Research Support, Non-U.S. Gov't
- Comparing the sugar profiles and primary structures of alkali-extracted water-soluble polysaccharides in cell wall between the yeast and mycelial phases from Tremella fuciformis
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Hanyu Zhu , Yuan Yuan , Juan Liu , Liesheng Zheng , Liguo Chen , Aimin Ma
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J. Microbiol. 2016;54(5):381-386. Published online April 20, 2016
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DOI: https://doi.org/10.1007/s12275-016-5533-x
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Abstract
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To gain insights into dimorphism, cell wall polysaccharides
from Tremella fuciformis strains were obtained from alkaliextracted
water-soluble fractions PTF-M38 (from the mycelial
form), PTF-Y3 and PTF-Y8 (from the yeast form) of
T. fuciformis strains were used to gain some insights into
dimorphism study. Their chemical properties and structural
features were investigated using gel permeation chromatography,
gas chromatography, UV and IR spectrophotometry
and Congo red binding reactions. The results indicated that
the backbones of PTF-M38, PTF-Y3 and PTF-Y8 were configured
with α-linkages with average molecular weights of
1.24, 1.08, and 1.19 kDa, respectively. PTF-M38 was mainly
composed of xylose, mannose, glucose, and galactose in a
ratio of 1:1.47:0.48:0.34, while PTF-Y3 and PTF-Y8 were
mainly composed of xylose, mannose and glucose in a ratio
of 1:1.65:4.06 and 1:1.21:0.44, respectively. The sugar profiles
of PTF-M38, PTF-Y3 and PTF-Y8 were also established
for further comparison. These profiles showed that all three
polysaccharides contained the same sugars but in different
ratios, and the carbon sources (xylose, mannose, glucose, and
galactose) affected the sugar ratios within the polysaccharides.
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- Extraction, structure and bioactivity of
Tremella Fuciformis polysaccharides: A review
Guang-Qiang Fu, Yi-Xuan Li, Yan He, Hua Zhang, Xia Ma
Food & Medicine Homology.2025;[Epub] CrossRef - Enhancement of efficient molecular biology tools for Tremella fuciformis spore
Caiyuan Yu, Yuanwei Sun, Chunkai Yang, Yan Fang, Qi Meng, Yibin Qiu, Peng Lei, Hong Xu, Qi Zhang, Sha Li
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International Journal of Biological Macromolecules.2023; 247: 125749. CrossRef - Tremella fuciformis Polysaccharide Induces Apoptosis of B16 Melanoma Cells via Promoting the M1 Polarization of Macrophages
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Journal of Food Composition and Analysis.2023; 115: 105005. CrossRef - Amelioration of Obesity in Mice Fed a High-Fat Diet with Uronic Acid–Rich Polysaccharides Derived from Tremella fuciformis
Chun-Hui Chiu, Kai-Chu Chiu, Li-Chan Yang
Polymers.2022; 14(8): 1514. CrossRef - Study of Dimorphism Transition Mechanism of Tremella fuciformis Based on Comparative Proteomics
Yaxing Li, Haohao Tang, Weichao Zhao, Yang Yang, Xiaolu Fan, Guanping Zhan, Jiahuan Li, Shujing Sun
Journal of Fungi.2022; 8(3): 242. CrossRef - Extraction, isolation, purification, derivatization, bioactivity, structure–activity relationship, and application of polysaccharides from White jellyfungus
Bobo Lin, Gangliang Huang
Biotechnology and Bioengineering.2022; 119(6): 1359. CrossRef - Structure, bioactivities and applications of the polysaccharides from Tricholoma Matsutake: a review
Mengjiao LI, Yukun ZHANG, Qi LU, Yuanzhen GAO, Ting YE, Chao WANG, Dongming XING
Food Science and Technology.2022;[Epub] CrossRef - Characterization of a G protein α subunit encoded gene from the dimorphic fungus-Tremella fuciformis
Hanyu Zhu, Dongmei Liu, Liesheng Zheng, Liguo Chen, Aimin Ma
Antonie van Leeuwenhoek.2021; 114(11): 1949. CrossRef - A review on the production, structure, bioactivities and applications of Tremella polysaccharides
Xia Ma, Meng Yang, Yan He, Chuntao Zhai, Chengliang Li
International Journal of Immunopathology and Pharmacology.2021;[Epub] CrossRef - Tremella fuciformis TFCUV5 Mycelial Culture-derived Exopolysaccharide Production and Its Anti-aging Effects on Skin Cells
Min-Ho Jo, Byeol Kim, Jung-Hyun Ju, Sun-Yeon Heo, Keug-Hyun Ahn, Hye Ja Lee, Hyun-Sook Yeom, Hansu Jang, Min-Soo Kim, Chul-Ho Kim, Baek-Rock Oh
Biotechnology and Bioprocess Engineering.2021; 26(5): 738. CrossRef - Cloning and functional characterization of gpd and α-tubulin promoters from Annulohypoxylon stygium, a companion fungus of Tremella fuciformis
Dongmei Liu, Hanyu Zhu, Dwi Pujiana, Liesheng Zheng, Liguo Chen, Aimin Ma
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Reviews
- REVIEW] Recent advances in the understanding of the Aspergillus fumigatus cell wall
-
Mark J. Lee , Donald C. Sheppard
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J. Microbiol. 2016;54(3):232-242. Published online February 27, 2016
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DOI: https://doi.org/10.1007/s12275-016-6045-4
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Abstract
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Over the past several decades, research on the synthesis and
organization of the cell wall polysaccharides of Aspergillus
fumigatus has expanded our knowledge of this important
fungal structure. Besides protecting the fungus from environmental
stresses and maintaining structural integrity of
the organism, the cell wall is also the primary site for interaction
with host tissues during infection. Cell wall polysaccharides
are important ligands for the recognition of fungi
by the innate immune system and they can mediate potent
immunomodulatory effects. The synthesis of cell wall polysaccharides
is a complicated process that requires coordinated
regulation of many biosynthetic and metabolic pathways.
Continuous synthesis and remodeling of the polysaccharides
of the cell wall is essential for the survival of the
fungus during development, reproduction, colonization and
invasion. As these polysaccharides are absent from the human
host, these biosynthetic pathways are attractive targets
for antifungal development. In this review, we present recent
advances in our understanding of Aspergillus fumigatus cell
wall polysaccharides, including the emerging role of cell
wall polysaccharides in the host-pathogen interaction.
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- REVIEW] The contribution of Aspergillus fumigatus stress responses to virulence and antifungal resistance
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Neil A. Brown , Gustavo H. Goldman
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J. Microbiol. 2016;54(3):243-253. Published online February 27, 2016
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DOI: https://doi.org/10.1007/s12275-016-5510-4
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Abstract
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Invasive aspergillosis has emerged as one of the most common
life-threatening fungal disease of humans. The emergence
of antifungal resistant pathogens represents a current
and increasing threat to society. In turn, new strategies to
combat fungal infection are urgently required. Fungal adaptations
to stresses experienced within the human host are a
prerequisite for the survival and virulence strategies of the
pathogen. Here, we review the latest information on the
signalling pathways in Aspergillus fumigatus that contribute
to stress adaptations and virulence, while highlighting their
potential as targets for the development of novel combinational
antifungal therapies.
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Research Support, Non-U.S. Gov'ts
- The crystal structure of the D-alanine-D-alanine ligase from Acinetobacter baumannii suggests a flexible conformational change in the central domain before nucleotide binding
-
Kim-Hung Huynh , Myoung-ki Hong , Clarice Lee , Huyen-Thi Tran , Sang Hee Lee , Yeh-Jin Ahn , Sun-Shin Cha , Lin-Woo Kang
-
J. Microbiol. 2015;53(11):776-782. Published online October 28, 2015
-
DOI: https://doi.org/10.1007/s12275-015-5475-8
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45
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0
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4
Crossref
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Abstract
-
Acinetobacter baumannii, which is emerging as a multidrugresistant
nosocomial pathogen, causes a number of diseases,
including pneumonia, bacteremia, meningitis, and skin infections.
With ATP hydrolysis, the D-alanine-D-alanine ligase
(DDL) catalyzes the synthesis of D-alanyl-D-alanine, which
is an essential component of bacterial peptidoglycan. In this
study, we determined the crystal structure of DDL from A.
baumannii (AbDDL) at a resolution of 2.2 Å. The asymmetric
unit contained six protomers of AbDDL. Five protomers
had a closed conformation in the central domain, while one
protomer had an open conformation in the central domain.
The central domain with an open conformation did not interact
with crystallographic symmetry-related protomers and
the conformational change of the central domain was not due
to crystal packing. The central domain of AbDDL can have an
ensemble of the open and closed conformations before the
binding of substrate ATP. The conformational change of the
central domain is important for the catalytic activity and the
detail information will be useful for the development of inhibitors
against AbDDL and putative antibacterial agents
against A. baumannii. The AbDDL structure was compared
with that of other DDLs that were in complex with potent
inhibitors and the catalytic activity of AbDDL was confirmed
using enzyme kinetics assays.
-
Citations
Citations to this article as recorded by

- In Silico Design and In Vitro Assessment of Bicyclic Trifluoromethylated Pyrroles as New Antibacterial and Antifungal Agents
Diana Hodyna, Anton Klipkov, Maryna Kachaeva, Yurii Shulha, Igor Gerus, Larysa Metelytsia, Vasyl Kovalishyn
Chemistry & Biodiversity.2024;[Epub] CrossRef - Genome-Scale Metabolic Modeling Reveals Metabolic Alterations of Multidrug-Resistant Acinetobacter baumannii in a Murine Bloodstream Infection Model
Jinxin Zhao, Yan Zhu, Jiru Han, Yu-Wei Lin, Michael Aichem, Jiping Wang, Ke Chen, Tony Velkov, Falk Schreiber, Jian Li
Microorganisms.2020; 8(11): 1793. CrossRef - Identification of natural inhibitors against Acinetobacter baumannii d-alanine-d-alanine ligase enzyme: A multi-spectrum in silico approach
Sajjad Ahmad, Saad Raza, Sumra Wajid Abbasi, Syed Sikander Azam
Journal of Molecular Liquids.2018; 262: 460. CrossRef - Molecular characterization of SCO0765 as a cellotriose releasing endo-β-1,4-cellulase from Streptomyces coelicolor A(3)
Joo-Bin Hong, Vijayalakshmi Dhakshnamoorthy, Chang-Ro Lee
Journal of Microbiology.2016; 54(9): 626. CrossRef
- The Identification of Six Novel Proteins with Fibronectin or Collagen Type І Binding Activity from Streptococcus suis Serotype 2
-
Hui Zhang , Junxi Zheng , Li Yi , Yue Li , Zhe Ma , Hongjie Fan , Chengping Lu
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J. Microbiol. 2014;52(11):963-969. Published online October 31, 2014
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DOI: https://doi.org/10.1007/s12275-014-4311-x
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47
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12
Crossref
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Abstract
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Streptococcus suis, a major swine pathogen, is an emerging zoonotic agent that causes meningitis and septic shock. Bacterial cell wall and secreted proteins are often involved in interactions with extracellular matrix proteins (ECMs), which play important roles in the initial steps of pathogenesis. In this study, 2D SDS-PAGE, western blotting-based binding affinity measurements, and microtiter plate binding assays were used to identify cell wall and secreted proteins from S. suis that interact with fibronectin and collagen type І. We identified six proteins from S. suis, including three proteins (translation elongation factor G, oligopeptide-binding protein
OppA precursor, and phosphoglycerate mutase) that show both fibronectin and collagen type І binding activity. To the best of our knowledge, these three newly identified proteins had no previously reported fibronectin or collagen type І binding activity. Overall, the aim in this study was to identify proteins with ECM binding activity from S. suis and it represents the first report of six new proteins from S. suis
that interact with fibronectin or collagen type І.
-
Citations
Citations to this article as recorded by

- Orphan response regulator CovR plays positive regulative functions in the survivability and pathogenicity of Streptococcus suis serotype 2 isolated from a pig
Yanyan Zhang, Rui Li, Qian Li, Yongwei Zhu, Xiaopei Yang, Di Zhao, Bingbing Zong
BMC Veterinary Research.2023;[Epub] CrossRef - Schistosoma mansoni phosphoglycerate mutase: a glycolytic ectoenzyme with thrombolytic potential
David B. Pirovich, Akram A. Da’dara, Patrick J. Skelly
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Haodan Zhu, Junming Zhou, Dandan Wang, Zhengyu Yu, Bin Li, Yanxiu Ni, Kongwang He
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Quan Li, Yang Fu, Genglin Guo, Zhuohao Wang, Wei Zhang
AMB Express.2020;[Epub] CrossRef - Identification of two adhesins of Actinobacillus seminis
J. Fernando Montes-García, Delil A. Chincoya Martinez, Sergio Vaca Pacheco, Candelario Vázquez Cruz, Patricia Sanchez Alonso, Juan Xicohtencatl Cortes, Hector Trujillo-Ruiz, Erasmo Negrete-Abascal
Small Ruminant Research.2018; 167: 100. CrossRef - Characterization and functional analysis of PnuC that is involved in the oxidative stress tolerance and virulence of Streptococcus suis serotype 2
Quan Li, Yuhang Zhang, Du Dechao, Yu Yanfei, Wei Zhang
Veterinary Microbiology.2018; 216: 198. CrossRef - Understanding the virulence of Streptococcus suis : A veterinary, medical, and economic challenge
B. Haas, D. Grenier
Médecine et Maladies Infectieuses.2018; 48(3): 159. CrossRef - Factor H specifically capture novel Factor H-binding proteins of Streptococcus suis and contribute to the virulence of the bacteria
Quan Li, Caifeng Ma, Yang Fu, Yanan He, Yanfei Yu, Dechao Du, Huochun Yao, Chengping Lu, Wei Zhang
Microbiological Research.2017; 196: 17. CrossRef - The surface-displayed chaperones GroEL and DnaK of Mycoplasma pneumoniae interact with human plasminogen and components of the extracellular matrix
Lisa Hagemann, Anne Gründel, Enno Jacobs, Roger Dumke
Pathogens and Disease.2017;[Epub] CrossRef - Initial steps of the pathogenesis of the infection caused byStreptococcus suis: fighting against nonspecific defenses
Mariela Segura, Cynthia Calzas, Daniel Grenier, Marcelo Gottschalk
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Anne Gründel, Enno Jacobs, Roger Dumke
International Journal of Medical Microbiology.2016; 306(8): 675. CrossRef - Identification of Novel Laminin- and Fibronectin-binding Proteins by Far-Western Blot: Capturing the Adhesins of Streptococcus suis Type 2
Quan Li, Hanze Liu, Dechao Du, Yanfei Yu, Caifeng Ma, Fangfang Jiao, Huochun Yao, Chengping Lu, Wei Zhang
Frontiers in Cellular and Infection Microbiology.2015;[Epub] CrossRef
- Identification and Characterization of a Class III Chitin Synthase Gene of Moniliophthora perniciosa, the Fungus That Causes Witches' Broom Disease of Cacao
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Catiane S. Souza , Bruno M. Oliveira , Gustavo G. L. Costa , Albert Schriefer , Alessandra Selbach-Schnadelbach , Ana Paula T. Uetanabaro , Carlos P. Pirovani , Goncalo A. G. Pereira , Alex G. Taranto , Julio Cezar de M. Cascardo , Aristoteles Goes-Neto
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J. Microbiol. 2009;47(4):431-440. Published online September 9, 2009
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DOI: https://doi.org/10.1007/s12275-008-0166-3
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39
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8
Scopus
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Abstract
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Chitin synthase (CHS) is a glucosyltransferase that converts UDP-N-acetylglucosamine into chitin, one of the main components of fungal cell wall. Class III chitin synthases act directly in the formation of the cell wall. They catalyze the conversion of the immediate precursor of chitin and are responsible for the majority of chitin synthesis in fungi. As such, they are highly specific molecular targets for drugs that can inhibit the growth and development of fungal pathogens. In this work, we have identified and characterized a chitin synthase gene of Moniliophthora perniciosa (Mopchs) by primer walking. The complete gene sequence is 3,443 bp, interrupted by 13 small introns, and comprises a cDNA with an ORF with 2,739 bp, whose terminal region was experimentally determined, encoding a protein with 913 aa that harbors all the motifs and domains typically found in class III chitin synthases. This is the first report on the characterization of a chitin synthase gene, its mature transcription product, and its putative protein in basidioma and secondary mycelium stages of M. perniciosa, a basidiomycotan fungus that causes witches’ broom disease of cacao.
- Enhanced Secretion of Cell Wall Bound Enolase into Culture Medium by the soo1-1 Mutation of Saccharomyces cerevisiae
-
Ki-Hyun Kim , Hee-Moon Park
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J. Microbiol. 2004;42(3):248-252.
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DOI: https://doi.org/2080 [pii]
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Abstract
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In order to identify the protein(s) secreted into culture medium by the soo1-1/ret1-1 mutation of Saccharomyces cerevisiae, proteins from the culture medium of cells grown at permissive (28^oC) and non-permissive temperatures (37^oC), were analyzed. Comparison of protein bands separated by SDS-PAGE identified a prominent band of 47-kDa band from a mutant grown at 37^oC. N-terminal amino acid sequencing of this 47-kDa protein showed high identity with enolases 1 and 2. Western blot analysis revealed that most of the cell wall-bound enolase was released into the culture medium of the mutant grown at 37^oC, some of which were separated as those with lower molecular weights. Our results, presented here, indicate the impairment of cell wall enolase biogenesis and assembly by the soo1-1/ret1-1 mutation of S. cerevisiae.
- Heavy Metal Biosorption and its Significance to Metal Tolerance of Streptomycetes
-
Jae-young Rho , Jae-heon Kim
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J. Microbiol. 2002;40(1):51-54.
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Abstract
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Heavy metal adsorptions of four streptomycetes were compared with each other. Among the test strains, Streptomyces viridochromogenes showed the most efficient metal binding activity, which was carried out by cell wall as well as freeze-dried mycelium. An order of adsorption potential (zinc > copper > lead > cadmium) was observed in single metal reactions, whereas this adsorption order was disturbed in mixed-metal reactions. The metal adsorption reactions were very fast, pH dependent and culture age-independent, suggestive of a physico-chemical reaction between cell wall components and heavy metal ions. The metal tolerant stains presented the weakest adsorbing activity, indicating that the metal biosorption was not the basis of the metal tolerance.
- Characterization of Cell Wall Proteins from the soo1-1/ret1-1 Mutant of Saccharomyces cerevisiae
-
Dong-Won Lee , Ki-Hyun Kim , Se-Chul Chun , Hee-Moon Park
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J. Microbiol. 2002;40(3):219-223.
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Abstract
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In order to investigate the function of Soo1p/[alpha]-COP during post-translational modification and intracellular transport of cell wall proteins in Saccharomyces cerevisiae, cell wall proteins from the soo1-1/ret1-1 mutant cells were analyzed. SDS-PAGE analysis of biotin labeled cell wall proteins suggested that the soo1-1 mutation impairs post-translational modification of cell wall proteins, such as N- and/or O-glycosylation. Analysis of cell wall proteins with antibodies against [beta]-1,3-glucan and [beta]-1,6-glucan revealed alteration of the linkage between cell wall proteins and [beta]-glucans in the soo1-1 mutant cells. Compositional sugar analysis of the cell wall proteins also suggested that the soo1-1 mutation impairs glycosylation of cell wall protein in the ER, which is crucial for the maintenance of cell wall integrity.