MSK
Search
- Page Path
- HOME > Search
Journal Articles
- Paraflavitalea soli gen. nov., sp. nov., isolated from greenhouse soil
- Jun Heo , Hang-Yeon Weon , Hayoung Cho , Seung-Beom Hong , Jeong-Seon Kim , Soo-Jin Kim , Soon-Wo Kwon
- J. Microbiol. 2020;58(1):17-23. Published online November 23, 2019
- DOI: https://doi.org/10.1007/s12275-020-9236-y
- 47 View
- 0 Download
- 7 Web of Science
- 7 Crossref
-
Abstract
- A bacterial strain designated 5GH32-13T was isolated from greenhouse soil in Yongin-city, Republic of Korea. Cells were Gram-stain-negative, strictly aerobic, motile rods of two different shapes. The strain was catalase-positive and oxidasenegative. Flexirubin-like pigments were not detected. β-Carotene was produced. The strain grew in the range of 10–37°C (optimum of 28–30°C) and pH 6–8 (optimum of pH 7) and tolerated up to 1% (w/v) NaCl (optimum of 0%). According to the 16S rRNA gene sequence comparison, strain 5GH32- 13T shared a sequence similarity of less than 96.0% with all validly named taxa, having the highest sequence similarity with Pseudoflavitalea soli KIS20-3T (95.8%), Pseudoflavitalea rhizosphaerae T16R-265T (95.4%), Flavitalea gansuensis JCN-23T (95.3%), Pseudobacter ginsenosidimutans Gsoil 221T (95.3%), and Flavitalea populi HY-50RT (95.2%). A phylogenetic tree showed that strain 5GH32-13T was not grouped consistently into any specific genus. Its only polyamine was homospermidine, and its major fatty acids (> 10% of total fatty acids) were iso-C15:0, iso-C17:0 3-OH, and iso-C15:1 G. The strain’s only respiratory quinone was MK-7, and its polar lipids were phosphatidylethanolamine, one unidentified phospholipid, six unidentified aminolipids and four unidentified lipids. Its DNA G + C content was 47.5 mol%. The results from chemotaxonomic, phenotypic and phylogenetic analyses indicated that strain 5GH32-13T represents a novel species of a novel genus of the family Chitinophagaceae, and the name Paraflavitalea soli gen. nov., sp. nov. is proposed. The type strain is 5GH32-13T (= KACC 17331T = JCM 33061T).
-
Citations
Citations to this article as recorded by
- Polysaccharide utilization loci encoded DUF1735 likely functions as membrane‐bound spacer for carbohydrate active enzymes
Lisanne Hameleers, Lucie A. Gaenssle, Salvador Bertran‐Llorens, Tjaard Pijning, Edita Jurak
FEBS Open Bio.2024; 14(7): 1133. CrossRef - Paraflavitalea pollutisoli sp. nov., Pollutibacter soli gen. nov. sp. nov., Polluticoccus soli gen. nov. sp. nov., and Terrimonas pollutisoli sp. nov., four new members of the family Chitinophagaceae from polluted soil
Ze-Shen Liu, Xiao-Kang Wang, Ke-Huan Wang, Mei-Ling Yang, De-Feng Li, Shuang-Jiang Liu
Systematic and Applied Microbiology.2024; 47(2-3): 126503. CrossRef -
Paraflavisolibacter caeni gen. nov., sp. nov., a novel taxon within the family Chitinophagaceae isolated from sludge
Cansheng Yuan, Bin Liu, Lin Wang, Weihua Long, Zhuang Ke, Jian He
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef - Longitalea arenae gen. nov., sp. nov. and Longitalea luteola sp. nov., two new members of the family Chitinophagaceae isolated from desert soil
Shuai Li, Lei Dong, Jia-Rui Han, Guo-Yuan Shi, Chun-Yan Lu, Lu Xu, Wen-Hui Lian, Dalal Hussien M. Alkhalifah, Wael N. Hozzein, Wen-Jun Li
Archives of Microbiology.2022;[Epub] CrossRef - Optimizing the bacterial community structure and function in rhizosphere soil of sesame continuous cropping by the appropriate nitrate ammonium ratio
Ruiqing Wang, Zhihua Zhang, Fengjuan Lv, Hongxin Lin, Lingen Wei, Yunping Xiao
Rhizosphere.2022; 23: 100550. CrossRef -
Paraflavitalea devenefica sp. nov., isolated from urban soil
Xiaoxiao Hou, Hongliang Liu, Yumang Shang, Sidi Mao, Shucheng Li, Feng Sang, Hongkuan Deng, Lijuan Wang, Ling Kong, ChunYang Zhang, Zhongfeng Ding, Yan Gao, Shuzhen Wei, Zhiwei Chen
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology.2020; 70(5): 2960. CrossRef
- Polysaccharide utilization loci encoded DUF1735 likely functions as membrane‐bound spacer for carbohydrate active enzymes
- Mucibacter soli gen. nov., sp. nov., a new member of the family Chitinophagaceae producing mucin
- Min-Kyeong Kim , Sewook Park , Tae-Su Kim , Yochan Joung , Ji-Hye Han , Seung Bum Kim
- J. Microbiol. 2019;57(5):356-361. Published online February 22, 2019
- DOI: https://doi.org/10.1007/s12275-019-8512-1
- 44 View
- 0 Download
- 8 Web of Science
- 8 Crossref
-
Abstract
- A Gram-stain-negative, mucus-forming, motile by gliding, non-spore-forming and short rod-shaped bacterial strain designated R1-15T was isolated from soil and its taxonomic position was evaluated using a polyphasic approach. Strain R1-15T grew at 15–37°C (optimum, 30°C), at pH 6–7 (optimum, pH 6) and in the presence of 0–1% (w/v) NaCl (optimum, 0%) on 0.1X TSA. On the basis of 16S rRNA gene sequence similarity, the novel strain was assigned to the family Chitinophagaceae of the phylum Bacteroidetes, and its closest related taxa were species of the genera Taibaiella (88.76– 90.02% sequence similarity), Lacibacter (89.24–90.00%), Chitinophaga (88.61–89.76%), and Terrimonas (89.04%). Flexirubin- type pigments were produced. The only isoprenoid quinone was MK-7, and the major polar lipid was phosphatidylethanolamine. Based on whole genome comparisons between the strain R1-15T and the type strains of relatives, the orthologous average nucleotide identity values were 66.9– 67.0%. The DNA G+C content of strain R1-15T was 43.8 mol%. The combination of phylogenetic, chemotaxonomic and phenotypic data clearly supported separation of strain R1-15T from related taxa, and thus the name Mucibacter soli gen. nov., sp. nov. is proposed. The type strain is R1-15T (= KCTC 62274T = JCM 31190T).
-
Citations
Citations to this article as recorded by- Simplicispira sedimenti sp. nov., isolated from a sediment of drainage ditch in winery
Xing Chen, Yuan-Dong Li, Xiu-Ming Liu, Li Gao, Xing-Kui Zhou, Li-Min Dong, Gang Du, Neeli Habib, Wen-Jun Li, Yan-Qing Duan
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Saline soil improvement promotes the transformation of microbial salt tolerance mechanisms and microbial-plant-animal ecological interactions
Keyu Yao, Guanghao Wang, Wen Zhang, Qiang Liu, Jian Hu, Mao Ye, Xin Jiang
Journal of Environmental Management.2024; 372: 123360. CrossRef - Cast from the Past? Microbial Diversity of a Neolithic Stone Circle
Mercedes Martín-Cereceda, Amaya de Cos-Gandoy, Richard A. J. Williams, David Elliott, Andrea Serrano-Bellón, Blanca Pérez-Uz, Abel Sanchez-Jimenez
Microorganisms.2024; 12(11): 2338. CrossRef - Dyella sedimenti sp. nov., Isolated from the Sediment of a Winery
Li Gao, Yuan-Dong Li, Xing-Kui Zhou, Xiu-Ming Liu, Hui-Tian Li, Wen-Jun Li, Yan-Qing Duan
Current Microbiology.2022;[Epub] CrossRef - Utilization of three-layered polyvinyl alcohol gel cubes for treating low-strength ammonium wastewater in a single-stage autotrophic nitrogen removal process
Dawoon Jeong, Hyunman Lim, Myoung-Soo Ko, Weonjae Kim
Journal of Environmental Chemical Engineering.2022; 10(1): 106934. CrossRef -
Nocardioides euryhalodurans sp. nov., Nocardioides seonyuensis sp. nov. and Nocardioides eburneiflavus sp. nov., isolated from soil
Su Gwon Roh, Chan Lee, Min-Kyeong Kim, Hye-Jeong Kang, Yeong Seok Kim, Min Ji Kim, Adeel Malik, Seung Bum Kim
International Journal of Systematic and Evolutionary Microbiology .2020; 70(4): 2682. CrossRef -
Gordonia insulae sp. nov., isolated from an island soil
Yeong Seok Kim, Su Gwon Roh, Seung Bum Kim
International Journal of Systematic and Evolutionary Microbiology .2020; 70(3): 2079. CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology .2020; 70(1): 1. CrossRef
- Simplicispira sedimenti sp. nov., isolated from a sediment of drainage ditch in winery
Research Support, Non-U.S. Gov't
- Flavisolibacter swuensis sp. nov. Isolated from Soil
- Eun Sun Joo , Seho Cha , Myung Kyum Kim , Weonhwa Jheong , Taegun Seo , Sathiyaraj Srinivasan
- J. Microbiol. 2015;53(7):442-447. Published online June 27, 2015
- DOI: https://doi.org/10.1007/s12275-015-5241-y
- 45 View
- 0 Download
- 10 Crossref
-
Abstract
- A Gram-staining-negative, non-motile, non-spore-forming, and rod-shaped bacterium designated as strain SR2-4-2T was isolated from soil in South Korea. Phylogenetic analysis based on 16S rRNA gene sequence of strain SR2-4-2T revealed that it belonged to the genus of Flavisolibacter, family of Chitinophagaceae, and class of Sphingobacteriia. It shared sequence similarities with Flavisolibacter ginsengisoli Gsoil 643T (96.4%), Flavisolibacter ginsengiterrae Gsoil 492T (96.3%), and Flavisolibacter rigui 02SUJ3T (93.0%). Chemotaxonomic data revealed that its predominant fatty acids were iso-C15:0 (26.4%) and iso-C17:0 3OH (10.7%). Its major polar lipid was phosphatidylethanolamine (PE) and its predominant respiratory quinone was MK-7. The G+C content of genomic DNA of the strain SR2-4-2T DNA was 45.0%. Based on the phylogenetic, chemotaxonomic, and phenotypic data, the strain SR2-4-2T (=JCM 19974T =KEMB 9004-156T) is classified as a type strain of a novel species for which the name of Flavisolibacter swuensis sp. nov. is proposed.
-
Citations
Citations to this article as recorded by- Annual bacterial community cycle in a seasonally ice‐covered river reflects environmental and climatic conditions
Perrine Cruaud, Adrien Vigneron, Marie‐Stéphanie Fradette, Caetano C. Dorea, Alexander I. Culley, Manuel J. Rodriguez, Steve J. Charette
Limnology and Oceanography.2020;[Epub] CrossRef - Influence of terminal electron-accepting conditions on the soil microbial community and degradation of organic contaminants of emerging concern
Yida Fang, Gary Vanzin, Alison M. Cupples, Timothy J. Strathmann
Science of The Total Environment.2020; 706: 135327. CrossRef - Flavisolibacter nicotianae sp. nov., isolated from rhizosphere soil of Nicotiana tabacum L.
Yuan-Dong Li, Xing-Kui Zhou, Ming-He Mo, Jian-Yu Jiao, Deng-Qiang Yang, Wen-Jun Li, Ti-Kun Zhang, Shi-Chun Qin, Yan-Qing Duan
International Journal of Systematic and Evolutionary Microbiology.2019; 69(7): 2082. CrossRef - Flavisolibacter aluminii sp. nov., a novel member of the genus Flavisolibacter isolated from an automotive air conditioning system
Hyosun Lee, Dong-Uk Kim, Suyeon Lee, Song-Gun Kim, A-Young Park, Jae-Hyung Ahn, Jong-Ok Ka
Journal of Microbiology.2019; 57(1): 18. CrossRef - Vegetation succession influences soil carbon sequestration in coastal alkali-saline soils in southeast China
Niu Li, Tianyun Shao, Tingshuo Zhu, Xiaohua Long, Xiumei Gao, Zhaopu Liu, Hongbo Shao, Zed Rengel
Scientific Reports.2018;[Epub] CrossRef - Flaviaesturariibacter luteus sp. nov., isolated from an agricultural floodplain soil, and emended description of the genus Flaviaesturariibacter
Javier Pascual, Bärbel U. Foesel, Alicia Geppert, Katharina J. Huber, Jörg Overmann
International Journal of Systematic and Evolutionary Microbiology.2017; 67(6): 1727. CrossRef - Long-Term Enrichment of Stress-Tolerant Cellulolytic Soil Populations following Timber Harvesting Evidenced by Multi-Omic Stable Isotope Probing
Roland C. Wilhelm, Erick Cardenas, Hilary Leung, András Szeitz, Lionel D. Jensen, William W. Mohn
Frontiers in Microbiology.2017;[Epub] CrossRef - Interactions of plant growth-promoting rhizobacteria and soil factors in two leguminous plants
Xiao Xiao, Miaochun Fan, Entao Wang, Weimin Chen, Gehong Wei
Applied Microbiology and Biotechnology.2017; 101(23-24): 8485. CrossRef - Diversity of vaginal microbiota increases by the time of labor onset
Ekaterina Avershina, Silje Slangsvold, Melanie Rae Simpson, Ola Storrø, Roar Johnsen, Torbjørn Øien, Knut Rudi
Scientific Reports.2017;[Epub] CrossRef -
Flavisolibacter tropicus sp. nov., isolated from tropical soil
Jae-Jin Lee, Myung-Suk Kang, Gyung Soon Kim, Chang Soek Lee, Sangyong Lim, Jidam Lee, Si Hyeon Roh, Hyerin Kang, Jung Min Ha, Sojung Bae, Hee-Young Jung, Myung Kyum Kim
International Journal of Systematic and Evolutionary Microbiology .2016; 66(9): 3413. CrossRef
- Annual bacterial community cycle in a seasonally ice‐covered river reflects environmental and climatic conditions
First
Prev
TOP
