Phylogenomic tree reconstruction has recently become a
routine and critical task to elucidate the evolutionary relationships
among bacterial species. The most widely used method
utilizes the concatenated core genes, universally present in a
single-copy throughout the bacterial domain. In our previous
study, a bioinformatics pipeline termed Up-to-date Bacterial
Core Genes (UBCG) was developed with a set of bacterial core
genes selected from 1,429 species covering 28 phyla. In this
study, we revised a new bacterial core gene set, named UBCG2,
that was selected from the more extensive genome sequence
set belonging to 3,508 species spanning 43 phyla. UBCG2 comprises
81 genes with nine Clusters of Orthologous Groups of
proteins (COGs) functional categories. The new gene set and
complete pipeline are available at http://leb.snu.ac.kr/ubcg2.
Citations
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Ramlibacter algicola sp. nov., isolated from a freshwater alga Cryptomonas obovoidea
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