Review
- Extensive Genomic Rearrangement of Catalase-Less Cyanobloom-Forming Microcystis aeruginosa in Freshwater Ecosystems
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Minkyung Kim, Jaejoon Jung, Wonjae Kim, Yerim Park, Che Ok Jeon, Woojun Park
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J. Microbiol. 2024;62(11):933-950. Published online October 8, 2024
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DOI: https://doi.org/10.1007/s12275-024-00172-7
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335
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Many of the world's freshwater ecosystems suffer from cyanobacteria-mediated blooms and their toxins. However, a mechanistic understanding of why and how Microcystis aeruginosa dominates over other freshwater cyanobacteria during warmer summers is lacking. This paper utilizes comparative genomics with other cyanobacteria and literature reviews to predict the gene functions and genomic architectures of M. aeruginosa based on complete genomes. The primary aim is to understand this species' survival and competitive strategies in warmer freshwater environments. M. aeruginosa strains exhibiting a high proportion of insertion sequences (~ 11%) possess genomic structures with low synteny across different strains. This indicates the occurrence of extensive genomic rearrangements and the presence of many possible diverse genotypes that result in greater population heterogeneities than those in other cyanobacteria in order to increase survivability during rapidly changing and threatening environmental challenges.
Catalase-less M. aeruginosa strains are even vulnerable to low light intensity in freshwater environments with strong ultraviolet radiation. However, they can continuously grow with the help of various defense genes (e.g., egtBD, cruA, and mysABCD) and associated bacteria. The strong defense strategies against biological threats (e.g., antagonistic bacteria, protozoa, and cyanophages) are attributed to dense exopolysaccharide (EPS)-mediated aggregate formation with efficient buoyancy and the secondary metabolites of M. aeruginosa cells. Our review with extensive genome analysis suggests that the ecological vulnerability of M. aeruginosa cells can be overcome by diverse genotypes, secondary defense metabolites, reinforced EPS, and associated bacteria.
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- Cyanophage Infections in a Sponge Intracellular Cyanobacterial Symbiont
Tzipora Peretz, Esther Cattan‐Tsaushu, Chiara Conti, Benyamin Rosental, Laura Steindler, Sarit Avrani
Environmental Microbiology.2025;[Epub] CrossRef - Public goods-mediated bacterial interplay in aquatic ecosystems
Yerim Park, Wonjae Kim, Jihye Bae, Woojun Park
Water Research.2025; 287: 124310. CrossRef - Horizontal Gene Transfer and Recombination in Cyanobacteriota
Devaki Bhaya, Gabriel Birzu, Eduardo P.C. Rocha
Annual Review of Microbiology
.2025; 79(1): 685. CrossRef
Journal Article
- Autotrophy to Heterotrophy: Shift in Bacterial Functions During the Melt Season in Antarctic Cryoconite Holes
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Aritri Sanyal, Runa Antony, Gautami Samui, Meloth Thamban
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J. Microbiol. 2024;62(8):591-609. Published online May 30, 2024
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DOI: https://doi.org/10.1007/s12275-024-00140-1
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329
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1
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Microbes residing in cryoconite holes (debris, water, and nutrient-rich ecosystems) on the glacier surface actively participate in carbon and nutrient cycling. Not much is known about how these communities and their functions change during the summer melt-season when intense ablation and runoff alter the influx and outflux of nutrients and microbes. Here, we use high-throughput-amplicon sequencing, predictive metabolic tools and Phenotype MicroArray techniques to track changes in bacterial communities and functions in cryoconite holes in a coastal Antarctic site and the surrounding fjord, during the summer season. The bacterial diversity in cryoconite hole meltwater was predominantly composed of heterotrophs (Proteobacteria) throughout the season. The associated functional potentials were related to heterotrophic-assimilatory and -dissimilatory pathways. Autotrophic Cyanobacterial lineages dominated the debris community at the beginning and end of summer, while heterotrophic Bacteroidota- and Proteobacteria-related phyla increased during the peak melt period. Predictive functional analyses based on taxonomy show a shift from predominantly phototrophy-related functions to heterotrophic assimilatory pathways as the melt-season progressed. This shift from autotrophic to heterotrophic communities within cryoconite holes can affect carbon drawdown and nutrient liberation from the glacier surface during the summer. In addition, the flushing out and export of cryoconite hole communities to the fjord could influence the biogeochemical dynamics of the fjord ecosystem.
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- Extensive Genomic Rearrangement of Catalase-Less Cyanobloom-Forming Microcystis aeruginosa in Freshwater Ecosystems
Minkyung Kim, Jaejoon Jung, Wonjae Kim, Yerim Park, Che Ok Jeon, Woojun Park
Journal of Microbiology.2024; 62(11): 933. CrossRef
Reviews
- Biological and Chemical Approaches for Controlling Harmful Microcystis Blooms
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Wonjae Kim, Yerim Park, Jaejoon Jung, Che Ok Jeon, Masanori Toyofuku, Jiyoung Lee, Woojun Park
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J. Microbiol. 2024;62(3):249-260. Published online April 8, 2024
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DOI: https://doi.org/10.1007/s12275-024-00115-2
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455
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15
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The proliferation of harmful cyanobacterial blooms dominated by Microcystis aeruginosa has become an increasingly serious problem in freshwater ecosystems due to climate change and eutrophication. Microcystis-blooms in freshwater generate compounds with unpleasant odors, reduce the levels of dissolved O2, and excrete microcystins into aquatic ecosystems, potentially harming various organisms, including humans. Various chemical and biological approaches have thus been developed to mitigate the impact of the blooms, though issues such as secondary pollution and high economic costs have not been adequately addressed. Red clays and H2O2 are conventional treatment methods that have been employed worldwide for the mitigation of the blooms, while novel approaches, such as the use of plant or microbial metabolites and antagonistic bacteria, have also recently been proposed. Many of these methods rely on the generation of reactive oxygen species, the inhibition of photosynthesis, and/or the disruption of cellular membranes as their mechanisms of action, which may also negatively impact other freshwater microbiota. Nevertheless, the underlying molecular mechanisms of anticyanobacterial chemicals and antagonistic bacteria remain unclear. This review thus discusses both conventional and innovative approaches for the management of M. aeruginosa in freshwater bodies.
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Citations
Citations to this article as recorded by

- Strong inhibitory effects of Desmodesmus sp. on Microcystis blooms: Potential as a biological control agent in aquaculture
Bo Yang, Yuhua Li, Zihan Wang, Zhiguang Yue, Junqi Wen, Xueqin Zhao, Hu Zhang, Xianfeng Wang, Xiufen Wang, Man Zhang
Aquaculture Reports.2025; 40: 102579. CrossRef - Field-scale artificial floating islands reduces cyanotoxin from residential raw sewage treatment basin
Zhaozhe Chen, Jiyoung Lee, Molly Mills, Abigail Volk, Ozeas S. Costa
Ecological Engineering.2025; 212: 107543. CrossRef - HABS-BLOCKS© Inhibited Microcystis and Planktothrix and Reduced Microcystin Concentrations in a Lake Water Mesocosm Study
Cameron Gastaldo, Stephen Vesper
Microorganisms.2025; 13(5): 1074. CrossRef - Synergistic radical-mediated algal inactivation via FeMoS2/ZnO-persulfate visible-light photocatalysis
Yingjian Ma, Yuxuan Tian, Ning Ding, Hong Liu
Composites Part B: Engineering.2025; 305: 112740. CrossRef - Isolation of a Novel Streptomyces sp. TH05 with Potent Cyanocidal Effects on Microcystis aeruginosa
Xuhan Wang, Siqi Zhu, Shenchen Tao, Shaoyong Zhang, Ruijun Wang, Liqin Zhang
Toxins.2025; 17(7): 354. CrossRef - Public goods-mediated bacterial interplay in aquatic ecosystems
Yerim Park, Wonjae Kim, Jihye Bae, Woojun Park
Water Research.2025; 287: 124310. CrossRef - Molecular mechanisms underlying the bloom-forming cyanobacterium Microcystis defence against predation by flagellates
Yan Chen, Xiao Zhang, Xinyang Bai, Yonglan Xu, Hangzhou Xu, Li Li
Journal of Water Process Engineering.2025; 77: 108611. CrossRef - Utilizing allelopathy from the invasive plant Solidago canadensis to control Microcystis aeruginosa blooms: An integrated metabolomic and bioassay approach
Miao Wu, Huiyuan Liu, Jiaxin Shen, Zhaohui Xie, Siyuan Yang, Jiahui Guo, Yijiang Liu, Huiting Lian, Dingli Wang
Journal of Hazardous Materials.2025; 499: 140043. CrossRef - Artificial Intelligence-Based Microfluidic Platform for Detecting Contaminants in Water: A Review
Yihao Zhang, Jiaxuan Li, Yu Zhou, Xu Zhang, Xianhua Liu
Sensors.2024; 24(13): 4350. CrossRef - Alleviation of H2O2 toxicity by extracellular catalases in the phycosphere of Microcystis aeruginosa
Yerim Park, Wonjae Kim, Yeji Cha, Minkyung Kim, Woojun Park
Harmful Algae.2024; 137: 102680. CrossRef - Extensive Genomic Rearrangement of Catalase-Less Cyanobloom-Forming Microcystis aeruginosa in Freshwater Ecosystems
Minkyung Kim, Jaejoon Jung, Wonjae Kim, Yerim Park, Che Ok Jeon, Woojun Park
Journal of Microbiology.2024; 62(11): 933. CrossRef - Laboratory-Simulated Inhibitory Effects of the Floating-Bed Plants on Microcystis aeruginosa and Their Microbial Communities’ Responses to Microcystins
Shuwen Zhang, Yuanpu Sha, Yuanyuan Tang, Longjie Li, Feihu Wang, Jing Dong, Xuejun Li, Yunni Gao, Xiaofei Gao, Huatao Yuan, Jingxiao Zhang
Microorganisms.2024; 12(10): 2035. CrossRef - Host-Associated Microbiome
Woo Jun Sul
Journal of Microbiology.2024; 62(3): 135. CrossRef
- Coordinated regulation of interferon and inflammasome signaling pathways by SARS-CoV-2 proteins
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Na-Eun Kim , Yoon-Jae Song
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J. Microbiol. 2022;60(3):300-307. Published online January 28, 2022
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DOI: https://doi.org/10.1007/s12275-022-1502-8
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290
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5
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Type I and III interferons (IFNs) and the nucleotide-binding
domain (NBD) leucine-rich repeat (LRR)-containing receptor
(NLR) family pyrin domain containing 3 (NLRP3) inflammasome
play pivotal roles in the pathogenesis of SARS-CoV-2.
While optimal IFN and inflammasome responses are essential
for limiting SARS-CoV-2 infection, aberrant activation of
these innate immune responses is associated with COVID-19
pathogenesis. In this review, we focus our discussion on recent
findings on SARS-CoV-2-induced type I and III IFNs
and NLRP3 inflammasome responses and the viral proteins
regulating these mechanisms.
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Citations
Citations to this article as recorded by

- The impact of polymorphic variants of interferon receptor genes on COVID-19 severity and antibiotic resistance
E. A. Krieger, O. V. Samodova, O. A. Svitich, R. V. Samoilikov, E. A. Meremianina, L. V. Ivanova, N. A. Bebyakova, E. N. Ilina, A. V. Pavlenko, Yu. I. Esin, A. L. Arkhipova, S. N. Kovalchuk, A. V. Kudryavtsev
Russian Journal of Infection and Immunity.2024; 13(6): 1027. CrossRef - SARS-CoV-2 ORF8 as a Modulator of Cytokine Induction: Evidence and Search for Molecular Mechanisms
Marília Inês Móvio, Giovana Waner Carneiro de Almeida, Isabella das Graças Lopes Martines, Gilmara Barros de Lima, Sergio Daishi Sasaki, Alexandre Hiroaki Kihara, Emma Poole, Michael Nevels, Maria Cristina Carlan da Silva
Viruses.2024; 16(1): 161. CrossRef - Sensing of viral lung infections by cGAS-STING
Lei Fang, Michael Roth
Exploration of Immunology.2022; : 303. CrossRef - Two years of COVID-19 pandemic: where are we now?
Jinjong Myoung
Journal of Microbiology.2022; 60(3): 235. CrossRef - The Potential of Purinergic Signaling to Thwart Viruses Including SARS-CoV-2
Davide Ferrari, Michele Rubini, Jorge S. Burns
Frontiers in Immunology.2022;[Epub] CrossRef
Journal Articles
- Light affects picocyanobacterial grazing and growth response of the mixotrophic flagellate Poterioochromonas malhamensis
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Thomas Weisse , Michael Moser
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J. Microbiol. 2020;58(4):268-278. Published online January 28, 2020
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DOI: https://doi.org/10.1007/s12275-020-9567-8
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239
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6
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4
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Abstract
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We measured the grazing and growth response of the mixotrophic
chrysomonad flagellate Poterioochromonas malhamensis
on four closely related picocyanobacterial strains isolated
from subalpine lakes in central Europe. The picocyanobacteria
represented different pigment types (phycoerythrin-
rich, PE, and phycocyanin-rich, PC) and phylogenetic
clusters. The grazing experiments were conducted with laboratory
cultures acclimated to 10 μmol photon/m2/sec (low
light, LL) and 100 μmol photon/m2/sec (moderate light, ML),
either in the dark or at four different irradiances ranging from
low (6 μmol photon/m2/sec) to high (1,500 μmol photon/m2/
sec) light intensity. Poterioochromonas malhamensis preferred
the larger, green PC-rich picocyanobacteria to the smaller,
red PE-rich picocyanobacterial, and heterotrophic bacteria.
The feeding and growth rates of P. malhamensis were sensitive
to the actual light conditions during the experiments;
the flagellate performed relatively better in the dark and at
LL conditions than at high light intensity. In summary, our
results
found strain-specific ingestion and growth rates of
the flagellate; an effect of the preculturing conditions, and,
unexpectedly, a direct adverse effect of high light levels. We
conclude that this flagellate may avoid exposure to high surface
light intensities commonly encountered in temperate
lakes during the summer.
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Citations
Citations to this article as recorded by

- A systematic review of the predatory contaminant Poterioochromonas in microalgal culture
Mingyang Ma, Chaojun Wei, Wenjie Huang, Yue He, Yingchun Gong, Qiang Hu
Journal of Applied Phycology.2023; 35(3): 1103. CrossRef - Transcriptional profile reveals the physiological responses to prey availability in the mixotrophic chrysophyte Poterioochromonas malhamensis
Mingyang Ma, Wentao Yang, Hong Chen, Wanwan Ke, Yingchun Gong, Qiang Hu
Frontiers in Microbiology.2023;[Epub] CrossRef - Microbial consortia in an ice‐covered high‐altitude lake impacted by additions of dissolved organic carbon and nutrients
Flavia Dory, Laurent Cavalli, Evelyne Franquet, Magalie Claeys‐Bruno, Benjamin Misson, Thierry Tatoni, Céline Bertrand
Freshwater Biology.2021; 66(8): 1648. CrossRef - Picoplankton feeding by the ciliate Vorticella similis in comparison to other peritrichs emphasizes their significance in the water purification process
Thomas Weisse, Jitka Jezberova, Michael Moser
Ecological Indicators.2021; 121: 106992. CrossRef
- Highly diverse endophytes in roots of Cycas bifida (Cycadaceae), an ancient but endangered gymnosperm
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Ying Zheng , Tzen-Yuh Chiang , Chao-Li Huang , Xun Gong
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J. Microbiol. 2018;56(5):337-345. Published online May 2, 2018
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DOI: https://doi.org/10.1007/s12275-018-7438-3
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253
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35
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Abstract
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As an ancient seed plant, cycads are one of the few gymnosperms
that develop a root symbiosis with cyanobacteria,
which has allowed cycads to cope with harsh geologic and
climatic conditions during the evolutionary process. However,
the endophytic microbes in cycad roots remain poorly identified.
In this study, using next-generation sequencing techniques,
we investigated the microbial diversity and composition
of both the coralloid and regular roots of Cycas bifida
(Dyer) K.D. Hill. Highly diverse endophytic communities were
observed in both the coralloid and regular roots. Of the associated
bacteria, the top five families were the Nostocaceae,
Sinobacteraceae, Bradyrhizobiaceae, Bacillaceae, and Hyphomicrobiaceae.
The Nectriaceae, Trichocomaceae, and Incertae
sedis were the predominant fungal families in all root samples.
A significant difference in the endophytic bacterial community
was detected between coralloid roots and regular
roots, but no difference was observed between the fungal communities
in the two root types. Cyanobacteria were more dominant
in coralloid roots than in regular roots. The divergence
of cycad root structures and the modified physiological
processes may have contributed to the abundance of cyanobionts
in coralloid roots. Consequently, the colonization of
cyanobacteria inhibits the assemblage of other endophytes.
Our results contribute to an understanding of the species diversity
and composition of the cycad-endophyte microbiome
and provide an abbreviated list of potential ecological roles
of the core microbes present.
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Citations
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- Distribution Pattern of Endangered Cycas taiwaniana Carruth. in China Under Climate-Change Scenarios Using the MaxEnt Model
Chunping Xie, Meng Li, C. Y. Jim, Ruonan Chen
Plants.2025; 14(11): 1600. CrossRef - Chemical ecology of symbioses in cycads, an ancient plant lineage
Shayla Salzman, Edder D. Bustos‐Díaz, Melissa R. L. Whitaker, Adriel M. Sierra, Angélica Cibrián‐Jaramillo, Francisco Barona‐Gómez, Juan Carlos Villarreal Aguilar
New Phytologist.2025; 246(4): 1494. CrossRef - Cyanobacteria of moss symbioses from White Sea coast: ultrastructural characteristics and taxonomic diversity
E. S. Lobakova, A. A. Zaytseva, K. A. Shibzukhova, S. G. Vasilieva, G. B. Butaeva, O. A. Gorelova
Symbiosis.2025;[Epub] CrossRef - Dictyophora indusiata and Bacillus aryabhattai improve sugarcane yield by endogenously associating with the root and regulating flavonoid metabolism
Mingzheng Duan, Xiang Li, Xiaojian Wu, Shengfeng Long, Hairong Huang, Yijie Li, Qi-Huai Liu, Guanghu Zhu, Bin Feng, Sunqian Qin, Changning Li, Hai Yang, Jie Qin, Zhendong Chen, Zeping Wang
Frontiers in Plant Science.2024;[Epub] CrossRef - Phylometagenomics of cycad coralloid roots reveals shared symbiotic signals
Edder D. Bustos-Diaz, Arely Cruz-Perez, Diego Garfias-Gallegos, Paul M. D'Agostino, Michelle M. Gehringer, Angelica Cibrian-Jaramillo, Francisco Barona-Gomez
Microbial Genomics
.2024;[Epub] CrossRef - Cycadales' defense against insect and mammalian herbivory: Do endophytic fungi have to say something? - A hypothesis
Yogesh Joshi, Pooja Bansal, Arjun Lal Yadav
Fungal Biology Reviews.2024; 50: 100393. CrossRef - Insight into saffron associated microbiota from different origins and explore the endophytes for enhancement of bioactive compounds
Sirui Xu, Liang Hong, Tong Wu, Xinting Liu, Zihan Ding, Li Liu, Qingsong Shao, Ying Zheng, Bingcong Xing
Food Chemistry.2024; 456: 140006. CrossRef - Leaf Endophytes Relationship with Host Metabolome Expression in Tropical Gymnosperms
Adriel M. Sierra, Omayra Meléndez, Rita Bethancourt, Ariadna Bethancourt, Lilisbeth Rodríguez-Castro, Christian A. López, Brian E. Sedio, Kristin Saltonstall, Juan Carlos Villarreal A.
Journal of Chemical Ecology.2024; 50(11): 815. CrossRef - Diversity of symbiotic cyanobacteria in cycad coralloid roots using a short-read rbcL-X amplicon
Adriel M. Sierra, Sandrine Toupin, Marta Alonso-García, Juan Carlos Villarreal A.
Symbiosis.2024; 92(2): 271. CrossRef - Emerging nitrogen-fixing cyanobacteria for sustainable cotton cultivation
Lucía Jiménez-Ríos, Alejandro Torrado, José Luis González-Pimentel, Macarena Iniesta-Pallarés, Fernando P. Molina-Heredia, Vicente Mariscal, Consolación Álvarez
Science of The Total Environment.2024; 924: 171533. CrossRef - The improvement of kinsenoside in wild-imitated cultivation Anoectochilus roxburghii associated with endophytic community
Ying Zheng, Lihong Li, Xinting Liu, Sirui Xu, Xutong Sun, Zili Zhang, Haipeng Guo, Qingsong Shao
Industrial Crops and Products.2024; 208: 117896. CrossRef - Cyanobacteria as a critical reservoir of the environmental antimicrobial resistome
V. J. Timms, K. A. Hassan, L. A. Pearson, B. A. Neilan
Environmental Microbiology.2023; 25(11): 2266. CrossRef - Effects of antibiotics on the endophyte and phyllosphere bacterial communities of lotus from above and below surface water in a typical shallow lake
Ling Zhang, Junhong Bai, Yujia Zhai, Kegang Zhang, Yaqi Wang, Rong Xiao, Milko A. Jorquera
Plant Physiology and Biochemistry.2023; 201: 107812. CrossRef - Core Endophytic Bacteria and Their Roles in the Coralloid Roots of Cultivated Cycas revoluta (Cycadaceae)
Jiating Liu, Haiyan Xu, Zhaochun Wang, Jian Liu, Xun Gong
Microorganisms.2023; 11(9): 2364. CrossRef - Changes in rice rhizosphere and bulk soil bacterial communities in the Doñana wetlands at different growth stages
Macarena Iniesta-Pallarés, Manuel Brenes-Álvarez, Ana V. Lasa, Manuel Fernández-López, Consolación Álvarez, Fernando P. Molina-Heredia, Vicente Mariscal
Applied Soil Ecology.2023; 190: 105013. CrossRef - Niche differentiation shapes the bacterial diversity and composition of apple
Yimei Huang, Xiaofen Chai, Xiaona Wang, Beibei Gao, Hui Li, Zhenhai Han, Xuefeng Xu, Xinzhong Zhang, Ting Wu, Yi Wang
Horticultural Plant Journal.2023; 9(1): 35. CrossRef - Core Microbiome and Microbial Community Structure in Coralloid Roots of Cycas in Ex Situ Collection of Kunming Botanical Garden in China
Zhaochun Wang, Jian Liu, Haiyan Xu, Jiating Liu, Zhiwei Zhao, Xun Gong
Microorganisms.2023; 11(9): 2144. CrossRef - Combined intensive management of fertilization, tillage, and organic material mulching regulate soil bacterial communities and functional capacities by altering soil potassium and pH in a Moso bamboo forest
Ying Zheng, Xinzhu Liu, Yanjiang Cai, Qingsong Shao, Wei Zhu, Xinchun Lin
Frontiers in Microbiology.2022;[Epub] CrossRef - Full-Length 16S rRNA and ITS Gene Sequencing Revealed Rich Microbial Flora in Roots of Cycas spp. in China
Melissa H Pecundo, Aimee Caye G Chang, Tao Chen, Thomas Edison E dela Cruz, Hai Ren, Nan Li
Evolutionary Bioinformatics.2021;[Epub] CrossRef - Differences in lipid homeostasis and membrane lipid unsaturation confer differential tolerance to low temperatures in two Cycas species
Yanling Zheng, Yongqiong Yang, Meng Wang, Shijun Hu, Jianrong Wu, Zhixiang Yu
BMC Plant Biology.2021;[Epub] CrossRef - Diversity, Phylogeny and Antagonistic Activity of Fungal Endophytes Associated with Endemic Species of Cycas (Cycadales) in China
Melissa H. Pecundo, Thomas Edison E. dela Cruz, Tao Chen, Kin Israel Notarte, Hai Ren, Nan Li
Journal of Fungi.2021; 7(7): 572. CrossRef - The complete chloroplast genome of Cycas bifida, an extremely small population protected species
Deng Zhang, Yanqiang Cao, Zhaocen Lu
Mitochondrial DNA Part B.2021; 6(10): 2960. CrossRef - The Predominance of Proteobacteria and Cyanobacteria in the Cycas dolichophylla Coralloid Roots Revealed by 16S rRNA Metabarcoding
Y. Zheng, T.-Y. Chiang, Ch-Li Huang, X.-Y. Feng, K. Yrjälä, X. Gong
Microbiology.2021; 90(6): 805. CrossRef - Biological control of Ralstonia solanacearum (Smith), the causal pathogen of bacterial wilt disease by using Pantoea spp
Kamal A. M. Abo-Elyousr, Sabry A. Hassan
Egyptian Journal of Biological Pest Control.2021;[Epub] CrossRef - The diversity and community structure of symbiotic cyanobacteria in hornworts inferred from long‐read amplicon sequencing
Jessica M. Nelson, Duncan A. Hauser, Fay‐Wei Li
American Journal of Botany.2021; 108(9): 1731. CrossRef - Biological potential of bioactive metabolites derived from fungal endophytes associated with medicinal plants
Priyanka Kumari Keshri, Nilesh Rai, Ashish Verma, Swapnil C. Kamble, Suvakanta Barik, Pradeep Mishra, Santosh Kumar Singh, Prafull Salvi, Vibhav Gautam
Mycological Progress.2021; 20(5): 577. CrossRef - Endophytes from Gnetum gnemon L. can protect seedlings against the infection of phytopathogenic bacterium Ralstonia solanacearum as well as promote plant growth in tomato
Heena Agarwal, Bhaskar Dowarah, Pooja Moni Baruah, Kuntala Sarma Bordoloi, Debasish B. Krishnatreya, Niraj Agarwala
Microbiological Research.2020; 238: 126503. CrossRef - Exploring cycad foliage as an archive of the isotopic composition of atmospheric nitrogen
Michael A. Kipp, Eva E. Stüeken, Michelle M. Gehringer, Kim Sterelny, John K. Scott, Paul I. Forster, Caroline A. E. Strömberg, Roger Buick
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R. Bouchard, G. Peñaloza-Bojacá, S. Toupin, Y. Guadalupe, J. Gudiño, N. Salazar Allen, F. W. Li, J. C. Villarreal A.
Symbiosis.2020; 81(1): 39. CrossRef - Specialized bacteriome uncovered in the coralloid roots of the epiphytic gymnosperm, Zamia pseudoparasitica
Philip Bell‐Doyon, Jérôme Laroche, Kristin Saltonstall, Juan Carlos Villarreal Aguilar
Environmental DNA.2020; 2(4): 418. CrossRef - Niche Specialization and Functional Overlap of Bamboo Leaf and Root Microbiota
Ying Zheng, Xinchun Lin
Frontiers in Microbiology.2020;[Epub] CrossRef - Chemical Element Concentrations of Cycad Leaves: Do We Know Enough?
Benjamin E. Deloso, Murukesan V. Krishnapillai, Ulysses F. Ferreras, Anders J. Lindström, Michael Calonje, Thomas E. Marler
Horticulturae.2020; 6(4): 85. CrossRef - Niche differentiation rather than biogeography shapes the diversity and composition of microbiome of Cycas panzhihuaensis
Ying Zheng, Xun Gong
Microbiome.2019;[Epub] CrossRef - Cycad Coralloid Roots Contain Bacterial Communities Including Cyanobacteria andCaulobacterspp. That Encode Niche-Specific Biosynthetic Gene Clusters
Karina Gutiérrez-García, Edder D Bustos-Díaz, José Antonio Corona-Gómez, Hilda E Ramos-Aboites, Nelly Sélem-Mojica, Pablo Cruz-Morales, Miguel A Pérez-Farrera, Francisco Barona-Gómez, Angélica Cibrián-Jaramillo, Tal Dagan
Genome Biology and Evolution.2019; 11(1): 319. CrossRef - Unlocking a high bacterial diversity in the coralloid root microbiome from the cycad genus Dioon
Pablo de Jesús Suárez-Moo, Andrew P. Vovides, M. Patrick Griffith, Francisco Barona-Gómez, Angélica Cibrián-Jaramillo, Sabrina Sarrocco
PLOS ONE.2019; 14(2): e0211271. CrossRef
- Dominant genera of cyanobacteria in Lake Taihu and their relationships with environmental factors
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Lijun Feng , Shiyou Liu , Wenxian Wu , Jiawen Ma , Pei Li , Hailing Xu , Na Li , Yaoyu Feng
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J. Microbiol. 2016;54(7):468-476. Published online June 28, 2016
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DOI: https://doi.org/10.1007/s12275-016-6037-4
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252
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Abstract
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Cyanobacterial blooms in freshwaters have become one of the
most widespread of environmental problems and threaten
water resources worldwide. Previous studies on cyanobacteria
in Lake Taihu often collected samples from one site (like
Meiliang Bay or Zhushan Bay) and focused on the variation
in patterns or abundance of Microcystis during the blooming
season. However, the distribution of cyanobacteria in Lake
Taihu shows differing pattern in various seasons. In this
study, water samples were collected monthly for one year at
five sites in Lake Taihu with different trophic status and a
physicochemical analysis and denaturing gradient gel electrophoresis
(DGGE) were conducted. DGGE fingerprint analysis
showed that Microcystis (7/35 bands) and Synechococcus
(12/35 bands) were the two most dominant genera present
during the study period at all five sites. Cyanobium (3/35
bands) was the third most common genus which has seldom
been previously reported in Lake Taihu. Redundancy analysis
(RDA) indicated that the cyanobacterial community
structure was significantly correlated with NO3
--N, CODMn,
and NH4
+-N in the winter and spring, whereas it was correlated
with water temperature in the summer and autumn.
Limiting the nutrient input (especially of N and C loading) in
Lake Taihu would be a key factor in controlling the growth
of different genera of cyanobacteria.
-
Citations
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Research Support, Non-U.S. Gov'ts
- Directed analysis of cyanobacterial membrane phosphoproteome using stained phosphoproteins and titanium-enriched phosphopeptides§
-
Dong-Gi Lee , Joseph Kwon , Chi-Yong Eom , Young-Moon Kang , Seong Woon Roh , Kyung-Bok Lee , Jong-Soon Choi
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J. Microbiol. 2015;53(4):279-287. Published online April 8, 2015
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DOI: https://doi.org/10.1007/s12275-015-5021-8
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250
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Gel-free shotgun phosphoproteomics of unicellular cyanobacterium
Synechocystis sp. PCC 6803 has not been reported
up to now. The purpose of this study is to develop directed
membrane phosphoproteomic method in Synechocystis sp.
Total Synechocystis membrane proteins were separated by
sodium dodecyl sulfate-polyacrylamide gel electrophoresis
and phosphoprotein-stained gel bands were selectively subjected
to in-gel trypsin digestion. The phosphorylation sites
of the resulting peptides were determined by assigning the
neutral loss of [M-H3PO4] to Ser, Thr, and Tyr residues using
nano-liquid chromatography 7 Tesla Fourier transform mass
spectrometry. As an initial application, 111 proteins and 33
phosphoproteins were identified containing 11 integral membrane
proteins. Identified four unknown phosphoproteins
with transmembrane helices were suggested to be involved in
membrane migration or transporters based on BLASTP search
annotations. The overall distribution of hydrophobic amino
acids in pTyr was lower in frequency than that of pSer or
pThr. Positively charged amino acids were abundantly revealed
in the surrounding amino acids centered on pTyr. A
directed shotgun membrane phosphoproteomic strategy provided
insight into understanding the fundamental regulatory
processes underlying Ser, Thr, and Tyr phosphorylation in
multi-layered membranous cyanobacteria.
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- NOTE] Effects of Light Intensity on Components and Topographical Structures of Extracellular Polysaccharides from the Cyanobacteria Nostoc sp.
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Hongmei Ge , Ling Xia , Xuping Zhou , Delu Zhang , Chunxiang Hu
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J. Microbiol. 2014;52(2):179-183. Published online February 1, 2014
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DOI: https://doi.org/10.1007/s12275-014-2720-5
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305
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45
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A study on the effects of light intensity (40 and 80 μE/m2/sec) on the components and topographical structures of extracellular polysaccharides (EPS) was carried out in cyanobacteria Nostoc sp.. EPS yield increased with light intensity. However, light intensity did not significantly affect the EPS fractions and monosaccharide composition. Higher light intensity generally resulted in higher protein content of EPS in similar fractions. The topographical structure of EPS, investigated by atomic force microscopy, appeared as spherical lumps, chains and networks. The long chains were observed at higher light intensity. Thus, light intensity affected the yield and nature of EPS.
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- Diversity of Cyanobacterial Species and Phylotypes in Biofilms from the Littoral Zone of Lake Baikal
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Ekaterina G. Sorokovikova , Olga I. Belykh , Anna S. Gladkikh , Oleg V. Kotsar , Irina V. Tikhonova , Oleg A. Timoshkin , Valentina V. Parfenova
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J. Microbiol. 2013;51(6):757-765. Published online December 19, 2013
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DOI: https://doi.org/10.1007/s12275-013-3240-4
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229
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The majority of naturally occurring biofilms contain numerous
microorganisms that have not yet been cultured.
Additionally, there is little information available regarding
the genetic structure and species diversity of these communities.
Therefore, we characterised the species diversity, structure
and metagenome of biofilms grown on stones and
steel plates in the littoral zone of Lake Baikal (East Siberia,
Russia) by applying three different approaches. First, light
microscopy enabled identification of the species diversity of
biofilm-forming cyanobacteria on different substrates with
the dominance of Rivularia rufescens, Tolypothrix limbata,
Chamaesiphon fuscus, Сh. subglobosus, and Heteroleibleinia
pusilla. Additionally, scanning electron microscopy was used
to show the spatial structure of biofilms. Finally, sequence
analysis of 30,660 16S rRNA clones indicated a high diversity
within the biofilm communities, with the majority of the
microbes being closely related to Cyanobacteria (8–46% sequences),
Proteobacteria (14–43%), and Bacteroidetes (10–
41%). Rivularia sp., Pseudanabaena sp., and Chamaesiphon
spp. were the dominant cyanobacterial phylotypes.
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Melissa Y. Cheung , Song Liang , Jiyoung Lee
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J. Microbiol. 2013;51(1):1-10. Published online March 2, 2013
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DOI: https://doi.org/10.1007/s12275-013-2549-3
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156
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Cyanobacteria have adapted to survive in a variety of environments and have been found globally. Toxin-producing cyanobacterial harmful algal blooms (CHABs) have been increasing in frequency worldwide and pose a threat to drinking and recreational water. In this study, the prevalence, impact of CHABs and mitigation efforts were reviewed, focusing on the Lake Erie region and Ohio’s inland lakes that have been impacted heavily as an example so that the findings can be transferrable to other parts of the world that face the similar problems due to the CHABs in their freshwater environments. This paper provides a basic introduction to CHABs and their toxins as well as an overview of public health implications including exposure routes, health effects, and drinking water issues, algal bloom advisory practices in Ohio, toxin measurements results in Ohio public water supplies, and mitigation efforts.
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- Translocation of Green Fluorescent Protein to Cyanobacterial Periplasm Using Ice Nucleation Protein
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Wipa Chungjatupornchai , Sirirat Fa-aroonsawat
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J. Microbiol. 2009;47(2):187-192. Published online May 2, 2009
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DOI: https://doi.org/10.1007/s12275-008-0188-x
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The translocation of proteins to cyanobacterial cell envelope is made complex by the presence of a highly differentiated membrane system. To investigate the protein translocation in cyanobacterium Synechococcus PCC 7942 using the truncated ice nucleation protein (InpNC) from Pseudomonas syringae KCTC 1832, the green fluorescent protein (GFP) was fused in frame to the carboxyl-terminus of InpNC. The fluorescence of GFP was found almost entirely as a halo in the outer regions of cells which appeared to correspond to the periplasm as demonstrated by confocal laser scanning microscopy, however, GFP was not displayed on the outermost cell surface. Western blotting analysis revealed that InpNC-GFP fusion protein was partially degraded. The N-terminal domain of InpNC may be susceptible to protease attack; the remaining C-terminal domain conjugated with GFP lost the ability to direct translocation across outer membrane and to act as a surface display motif. The fluorescence intensity of cells with periplasmic GFP was approximately 6-fold lower than that of cells with cytoplasmic GFP. The successful translocation of the active GFP to the periplasm may provide a potential means to study the property of cyanobacterial periplasmic substances in response to environmental changes in a non-invasive manner.
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- Surface display provides an efficient expression system for production of recombinant proteins and bacterial whole cell biosensor in E. coli
Fereshteh Ramezani Khorsand, Saghi Hakimi Naeini, Maryam Molakarimi, Ehsan Dehnavi, Mehdi Zeinoddini, Reza H. Sajedi
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Algal Research.2015; 12: 337. CrossRef - Comparative Mechanisms of Protein Transduction Mediated by Cell-Penetrating Peptides in Prokaryotes
Betty Revon Liu, Yue-Wern Huang, Robert S. Aronstam, Han-Jung Lee
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- Cyanobacterial Hybrid Kinase Sll0043 Regulates Phototaxis by Suppressing Pilin and Twitching Motility Protein
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Bong-Jeong Shin , Jeehyun Oh , Sungsoo Kang , Young-Ho Chung , Young Mok Park , Young Hwan Kim , Seungil Kim , Jong Bhak , Jong-Soon Choi
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J. Microbiol. 2008;46(3):300-308. Published online July 5, 2008
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DOI: https://doi.org/10.1007/s12275-007-0212-6
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The unicellular cyanobacterium Synechocystis sp. PCC 6803 glides toward a light source through the interplay of positive phototaxis genes and proteins. In genetic analysis, the complete disruption of the hybrid sensory kinase sll0043 produced negative phototaxis. Furthermore, Sll0043 was found to be a hub protein by in silico prediction of protein-protein interaction, in which Sll0043 was predominantly linked to seven two-component proteins with high confidence. To understand the regulation and networking of positive phototaxis proteins, the proteomic profile of the sll0043 mutant was compared to that of wild-type. In the sll0043 mutant, 18 spots corresponding to 15 unique proteins were altered by 1.3 to 59 fold; the spots were identified by 2-DE/MALDI-MS analysis. Down-regulated proteins in the sll0043 null-mutant included chaperonins, superoxide dismutase, and phycocyanin β-subunit. In contrast, nine proteins involved in photosynthesis, translation, regulatory function, and other functions were up-regulated. In particular, a twitching motility protein (PilT1) was induced over 2-fold in sll0043 mutant. Moreover, semiquantitative and quantitative RT-PCR analysis revealed that pilin (pilA1), pili motor (pilT1), and pili switch gene (pilT2) were significantly increased in sll0043 mutant. These results suggest that the hybrid kinase Sll0043 regulates positive phototaxis by suppressing the expression of pili biosynthesis and regulatory genes and through the interplay with positive phototaxis/motility two-component proteins.
- Alternative Alert System for Cyanobacterial Bloom, Using Phycocyanin as a Level Determinant
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Chi-Yong Ahn , Seung-Hyun Joung , Sook-Kyoung Yoon , Hee-Mock Oh
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J. Microbiol. 2007;45(2):98-104.
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DOI: https://doi.org/2527 [pii]
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Chlorophyll a concentration and cyanobacterial cell density are regularly employed as dual criteria for determinations of the alert level for cyanobacterial bloom. However, chlorophyll a is not confined only to the cyanobacteria, but is found universally in eukaryotic algae. Furthermore, the determination of cyanobacterial cell counts is notoriously difficult, and is unduly dependent on individual variation and trained skill. A cyanobacteria-specific parameter other than the cell count or chlorophyll a concentration is, accordingly, required in order to improve the present cyanobacterial bloom alert system. Phycocyanin has been shown to exhibit a strong correlation with a variety of bloom-related factors. This may allow for the current alert system criteria to be replaced by a three-stage alert system based on phycocyanin concentrations of 0.1, 30, and 700 μg/L. This would also be advantageous in that it would become far more simple to conduct measurements without the need for expensive equipment, thereby enabling the monitoring of entire lakes more precisely and frequently. Thus, an alert system with superior predictive ability based on highthroughput phycocyanin measurements appears feasible.
- Factors Indicating Culture Status During Cultivation of Spirulina (Arthrospira) platensis
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Choong-Jae Kim , Yun-Ho Jung , Hee-Mock Oh
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J. Microbiol. 2007;45(2):122-127.
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DOI: https://doi.org/2524 [pii]
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Factors indicating culture status of two Spirulina platensis strains were monitored in a batch mode cultivation for 36 days. Changing mode in all factors showed a common turning point, indicating shift of cell or culture status. Mean biomass productivity was highly sustained until day 22, chlorophyll a concentration peaked on day 22, pH value was >12 on day 22, coil number was abruptly shortened on day 22, and floating activity was sustained at greater than 79% after day 22, indicating that day 22 is a criterion reflecting phase-transfer in cell physiology in a batch culture system. Many of these changes may have been caused by increased pH, suggesting that pH control is essential for mass production of S. platensis. Fluctuations in floating activity were likely induced by the number of cellular gas vacuoles. Consequently, coil number per trichome and floating activity of S. platensis could readily act as simple indicators for determination of culture status or harvesting time of cells.