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Research article
BipA GTPase function and abundance regulate ribosome biogenesis and envelope homeostasis during cold adaptation in Escherichia coli
Yubin Lee, Eunsil Choi, Yeonwoo Jang, Yaesol Cho, Jihwan Hwang
Received August 18, 2026  Accepted October 19, 2026  Published online November 10, 2026  
DOI: https://doi.org/10.71150/jm.2608017    [Epub ahead of print]
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AbstractAbstract PDFSupplementary Material

BipA is a conserved ribosome-associated GTPase that supports bacterial stress adaptation. It participates in 50S ribosome assembly and envelope stress responses; however, it is not known whether both functions depend on its GTPase activity. In this study, we investigated Escherichia coli strains carrying chromosomal D74A or N128D substitutions in the conserved GTPase motifs of BipA. Both mutants displayed severe cold-sensitive growth defects that were similar to those of the ΔbipA strain. At low temperatures, 50S ribosome assembly was defective and immature ribosomal particles accumulated. Ribosome-binding analysis revealed that the mutant BipA had a lower association with ribosomal fractions. The mutants exhibited altered lipopolysaccharide profiles and envelope phenotypes, including increased capsule production, reduced biofilm formation and motility, and increased cell width and length. These phenotypes were most notable at low temperatures, indicating activation of the Rcs (Regulator of Capsule Synthesis) phosphorelay. We next examined the effects of BipA abundance on cellular physiology. BipA expression was influenced by both start-codon identity and the downstream coding context. BipA overexpression impaired growth and induced pronounced cell elongation at both optimal and low temperatures, indicating that proper control of BipA abundance is important for cellular homeostasis. Furthermore, the increased susceptibility of the ΔbipA strain to ampicillin at low temperatures suggested an association between BipA and peptidoglycan homeostasis. Together, these findings suggest that BipA GTPase function is required to maintain ribosome biogenesis and envelope homeostasis during cold adaptation, and that proper control of BipA abundance is also important for maintaining cellular physiology.

Article
Functional characterization of HigBA toxin-antitoxin system in an Arctic bacterium, Bosea sp. PAMC 26642
Eunsil Choi , Ahhyun Huh , Changmin Oh , Jeong-Il Oh , Ho Young Kang , Jihwan Hwang
J. Microbiol. 2022;60(2):192-206.   Published online February 1, 2022
DOI: https://doi.org/10.1007/s12275-022-1619-9
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AbstractAbstract PDF
Toxin-antitoxin (TA) systems are growth-controlling genetic elements consisting of an intracellular toxin protein and its cognate antitoxin. TA systems have been spread among microbial genomes through horizontal gene transfer and are now prevalent in most bacterial and archaeal genomes. Under normal growth conditions, antitoxins tightly counteract the activity of the toxins. Upon stresses, antitoxins are inactivated, releasing activated toxins, which induce growth arrest or cell death. In this study, among nine functional TA modules in Bosea sp. PAMC 26642 living in Arctic lichen, we investigated the functionality of BoHigBA2. BohigBA2 is located close to a genomic island and adjacent to flagellar gene clusters. The expression of BohigB2 induced the inhibition of E. coli growth at 37°C, which was more manifest at 18°C, and this growth defect was reversed when BohigA2 was co-expressed, suggesting that this BoHigBA2 module might be an active TA module in Bosea sp. PAMC 26642. Live/dead staining and viable count analyses revealed that the BoHigB2 toxin had a bactericidal effect, causing cell death. Furthermore, we demonstrated that BoHigB2 possessed mRNA-specific ribonuclease activity on various mRNAs and cleaved only mRNAs being translated, which might impede overall translation and consequently lead to cell death. Our study provides the insight to understand the cold adaptation of Bosea sp. PAMC 26642 living in the Arctic.

Citations

Citations to this article as recorded by  
  • Evaluating the Contribution of the Predicted Toxin–Antitoxin System HigBA to Persistence, Biofilm Formation, and Virulence in Burkholderia pseudomallei
    Itziar Chapartegui-González, Nittaya Khakhum, Jacob L. Stockton, Alfredo G. Torres, Igor E. Brodsky
    Infection and Immunity.2022;[Epub]     CrossRef
  • Chronicle of Research into Lichen-Associated Bacteria
    Zichen He, Takeshi Naganuma
    Microorganisms.2022; 10(11): 2111.     CrossRef
  • Degradation of amoxicillin by newly isolated Bosea sp. Ads-6
    Lei Yan, Ning Yan, Xi-Yan Gao, Ying Liu, Zhi-Pei Liu
    Science of The Total Environment.2022; 828: 154411.     CrossRef
Article
Functional and structural characterization of Deinococcus radiodurans R1 MazEF toxin-antitoxin system, Dr0416-Dr0417
Immanuel Dhanasingh , Eunsil Choi , Jeongeun Lee , Sung Haeng Lee , Jihwan Hwang
J. Microbiol. 2021;59(2):186-201.   Published online February 1, 2021
DOI: https://doi.org/10.1007/s12275-021-0523-z
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  • 6 Web of Science
  • 4 Crossref
AbstractAbstract PDF
In prokaryotes, toxin-antitoxin (TA) systems are commonly found. They likely reflect the adaptation of pathogenic bacteria or extremophiles to various unfavorable environments by slowing their growth rate. Genomic analysis of the extremophile Deinococcus radiodurans R1 revealed the presence of eight type II TA systems, including the genes dr0417, dr0660, dr1530, dr0690, and dr1807. Expression of these toxin genes led to inhibition of Escherichia coli growth, whereas their antidote antitoxins were able to recover the growth defect. Remarkably, Dr0417 (DrMazF) showed endoribonuclease activity toward rRNAs as well as mRNAs, as determined by in vivo and in vitro RNA cleavage assays, and this activity was inhibited by Dr0416 (DrMazE). It was also found that the expression of dr0416-0417 module is directly regulated by the DrMazE-MazF complex. Furthermore, this TA module was induced under stress conditions and plays an important role in survival. To understand the regulatory mechanism at the molecular level, we determined the first high-resolution structures of DrMazF alone and of the DrMazE-MazF complex. In contrast with the hetero-hexameric state of typical MazEMazF complexes found in other species, DrMazE-MazF crystal structure consists of a hetero-trimer, with the DNA-binding domain of DrMazE undergoing self-cleavage at the flexible linker loop. Our structure revealed that the unique residue R54 provides an additional positive charge to the substratebinding pocket of DrMazF, its mutation significantly affects the endonuclease activity. Thus, our work reports the unique structural and biochemical features of the DrMazE-MazF system.

Citations

Citations to this article as recorded by  
  • SeaMoon: From protein language models to continuous structural heterogeneity
    Valentin Lombard, Dan Timsit, Sergei Grudinin, Elodie Laine
    Structure.2025; 33(9): 1577.     CrossRef
  • Focused Overview of Mycobacterium tuberculosis VapBC Toxin–Antitoxin Systems Regarding Their Structural and Functional Aspects: Including Insights on Biomimetic Peptides
    Sung-Min Kang
    Biomimetics.2023; 8(5): 412.     CrossRef
  • Functional characterization of HigBA toxin-antitoxin system in an Arctic bacterium, Bosea sp. PAMC 26642
    Eunsil Choi, Ahhyun Huh, Changmin Oh, Jeong-Il Oh, Ho Young Kang, Jihwan Hwang
    Journal of Microbiology.2022; 60(2): 192.     CrossRef
  • Identification and characterization of the type II toxin-antitoxin systems in the carbapenem-resistant Acinetobacter baumannii
    Alireza Japoni-Nejad, Elnaz Harifi Mood, Parastoo Ehsani, Soroush Sardari, Fatemah Sadeghpour Heravi, Saeid Bouzari, Nader Shahrokhi
    Microbial Pathogenesis.2021; 158: 105052.     CrossRef

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