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Lysobacter arenosi sp. nov. and Lysobacter solisilvae sp. nov. isolated from soil
Kyeong Ryeol Kim† , Kyung Hyun Kim† , Shehzad Abid Khan , Hyung Min Kim , Dong Min Han , Che Ok Jeon
J. Microbiol. 2021;59(8):709-718.   Published online June 1, 2021
DOI: https://doi.org/10.1007/s12275-021-1156-y
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  • 11 Crossref
AbstractAbstract
Two Gram-stain negative, yellow-pigmented, and mesophilic bacteria, designated strains R7T and R19T, were isolated from sandy and forest soil, South Korea, respectively. Both strains were non-motile rods showing catalase- and oxidase-positive activities. Both strains were shown to grow at 10–37°C and pH 6.0–9.0, and in the presence of 0–1.5% (w/v) NaCl. Strain R7T contained iso-C14:0, iso-C15:0, iso-C16:0, and summed feature 9 (comprising C16:0 10-methyl and/or iso-C17:1 ω9c), whereas strain R19T contained iso-C11:0 3-OH, C16:1 ω7c alcohol, iso-C11:0, iso-C15:0, iso-C16:0, and summed feature 9 (comprising C16:0 10-methyl and/or iso-C17:1 ω9c) as major cellular fatty acids (> 5%). Both strains contained ubiquinone- 8 as the sole isoprenoid quinone and phosphatidylglycerol, phosphatidylethanolamine, and an unidentified phospholipid as the major polar lipids. The DNA G + C contents of strains R7T and R19T calculated from their genomes were 66.9 mol% and 68.9 mol%, respectively. Strains R7T and R19T were most closely related to Lysobacter panacisoli C8-1T and Lysobacter niabensis GH34-4T with 98.7% and 97.8% 16S rRNA sequence similarities, respectively. Phylogenetic analyses based on 16S rRNA gene sequences showed that strains R7T and R19T formed distinct phylogenetic lineages within the genus Lysobacter. Based on phenotypic, chemotaxonomic, and molecular features, strains R7T and R19T represent novel species of the genus Lysobacter, for which the names Lysobacter arenosi sp. nov. and Lysobacter solisilvae sp. nov. are proposed. The type strains of L. arenosi and L. solisilvae are R7T (= KACC 21663T = JCM 34257T) and R19T (= KACC 21767T = JCM 34258T), respectively.

Citations

Citations to this article as recorded by  
  • Luteimonas flava sp. nov. and Aquilutibacter rugosus gen. nov., sp. nov., isolated from freshwater environments in China and re-examining the taxonomic status of genera Luteimonas and Lysobacter
    Huibin Lu, Li Chen, Yujing Wang, Peng Xing, Qinglong Wu
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Saline soil improvement promotes the transformation of microbial salt tolerance mechanisms and microbial-plant-animal ecological interactions
    Keyu Yao, Guanghao Wang, Wen Zhang, Qiang Liu, Jian Hu, Mao Ye, Xin Jiang
    Journal of Environmental Management.2024; 372: 123360.     CrossRef
  • Optimal Irrigation and Fertilization Enhanced Tomato Yield and Water and Nitrogen Productivities by Increasing Rhizosphere Microbial Nitrogen Fixation
    Hongfei Niu, Tieliang Wang, Yongjiang Dai, Mingze Yao, Bo Li, Jiaqi Zheng, Lizhen Mao, Mingyu Zhao, Zhanyang Xu, Feng Zhang
    Agronomy.2024; 14(9): 2111.     CrossRef
  • Short-term effect of reclaimed wastewater quality gradient on soil microbiome during irrigation
    V. Moulia, N. Ait-Mouheb, G. Lesage, J. Hamelin, N. Wéry, V. Bru-Adan, L. Kechichian, M. Heran
    Science of The Total Environment.2023; 901: 166028.     CrossRef
  • Dyadobacter pollutisoli sp. nov., isolated from plastic waste landfill soil
    Kyeong Ryeol Kim, Jeong Min Kim, Jae Kyeong Lee, Dong Min Han, Lujiang Hao, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Physiological and genomic analyses of cobalamin (vitamin B12)-auxotrophy of Lysobacter auxotrophicus sp. nov., a methionine-auxotrophic chitinolytic bacterium isolated from chitin-treated soil
    Akihiro Saito, Hideo Dohra, Moriyuki Hamada, Ryota Moriuchi, Yohei Kotsuchibashi, Koji Mori
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Nitratireductor rhodophyticola sp. nov., isolated from marine red algae
    Kyung Hyun Kim, Sylvia Kristyanto, Hyung Min Kim, Kyeong Ryeol Kim, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Description of Corynebacterium poyangense sp. nov., isolated from the feces of the greater white-fronted geese (Anser albifrons)
    Qian Liu, Guoying Fan, Kui Wu, Xiangning Bai, Xi Yang, Wentao Song, Shengen Chen, Yanwen Xiong, Haiying Chen
    Journal of Microbiology.2022; 60(7): 668.     CrossRef
  • Lysobacter ciconiae sp. nov., and Lysobacter avium sp. nov., isolated from the faeces of an Oriental stork
    So-Yeon Lee, Pil Soo Kim, Hojun Sung, Dong-Wook Hyun, Jin-Woo Bae
    Journal of Microbiology.2022; 60(5): 469.     CrossRef
  • Isolation and characterization of tick-borne Roseomonas haemaphysalidis sp. nov. and rodent-borne Roseomonas marmotae sp. nov.
    Wentao Zhu, Juan Zhou, Shan Lu, Jing Yang, Xin-He Lai, Dong Jin, Ji Pu, Yuyuan Huang, Liyun Liu, Zhenjun Li, Jianguo Xu
    Journal of Microbiology.2022; 60(2): 137.     CrossRef
  • Rhodococcus oxybenzonivorans sp. nov., a benzophenone-3-degrading bacterium, isolated from stream sediment
    Ju Hye Baek, Woonhee Baek, Sang Eun Jeong, Sung Chul Lee, Hyun Mi Jin, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology.2022;[Epub]     CrossRef
Zur-regulated lipoprotein A contributes to the fitness of Acinetobacter baumannii
Eun Kyung Lee , Chul Hee Choi , Man Hwan Oh
J. Microbiol. 2020;58(1):67-77.   Published online January 2, 2020
DOI: https://doi.org/10.1007/s12275-020-9531-7
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  • 0 Download
  • 10 Web of Science
  • 11 Crossref
AbstractAbstract
Acinetobacter baumannii is a notorious nosocomial pathogen that commonly infects severely ill patients. Zinc (Zn) is essential to survive and adapt to different environment and host niches in A. baumannii. Of the Zinc uptake regulator (Zur)-regulated genes in A. baumannii, the A1S_3412 gene encoding a Zur-regulated lipoprotein A (ZrlA) is critical for cell envelope integrity and overcoming antibiotic exposure. This study investigated whether ZrlA contributes to the fitness of A. baumannii in vitro and in vivo using the wildtype A. baumannii ATCC 17978, ΔzrlA mutant, and zrlAcomplemented strains. The ΔzrlA mutant showed reduced biofilm formation, surface motility, and adherence to and invasion of epithelial cells compared to the wild-type strain. In a mouse pneumonia model, the ΔzrlA mutant showed significantly lower bacterial numbers in the blood than the wildtype strain. These virulence traits were restored in the zrlAcomplemented strain. Under static conditions, the expression of csuCDE, which are involved in the chaperone-usher pili assembly system, was significantly lower in the ΔzrlA mutant than in the wild-type strain. Moreover, the expression of the bfmR/S genes, which regulate the CsuA/BABCDE system, was significantly lower in the ΔzrlA mutant under static conditions than in the wild-type strain. Our results indicate that the zrlA gene plays a role in the fitness of A. baumannii by regulating the BfmR/S two-component system and subsequently the CsuA/BABCDE chaperone-usher pili assembly system, suggesting it as a potential target for anti-virulence strategies against A. baumannii.

Citations

Citations to this article as recorded by  
  • Molecular Detection of Pap II, OmpA, and LuxR Genes Responsible for Biofilm Formation in Acinetobacter baumannii Isolated from Hospitalized Patients
    Estabraq Ali Maklef, Amal A. Kareem, Susan F. K. Al-Sudani
    Medical Journal of Babylon.2024; 21(Suppl 2): S258.     CrossRef
  • Pathogenicity and virulence of Acinetobacter baumannii : Factors contributing to the fitness in healthcare settings and the infected host
    Massimiliano Lucidi, Daniela Visaggio, Antonella Migliaccio, Giulia Capecchi, Paolo Visca, Francesco Imperi, Raffaele Zarrilli
    Virulence.2024;[Epub]     CrossRef
  • Characterization of the Zinc Uptake Repressor (Zur) from Acinetobacter baumannii
    Minyong Kim, My Tra Le, Lixin Fan, Courtney Campbell, Sambuddha Sen, Daiana A. Capdevila, Timothy L. Stemmler, David P. Giedroc
    Biochemistry.2024; 63(5): 660.     CrossRef
  • Acinetobacter Metabolism in Infection and Antimicrobial Resistance
    Xiaomei Ren, Lauren D. Palmer, Karen M. Ottemann
    Infection and Immunity.2023;[Epub]     CrossRef
  • A response regulator controls Acinetobacter baumannii virulence by acting as an indole receptor
    Binbin Cui, Quan Guo, Xia Li, Shihao Song, Mingfang Wang, Gerun Wang, Aixin Yan, Jianuan Zhou, Yinyue Deng, Marenda Wilson-Pham
    PNAS Nexus.2023;[Epub]     CrossRef
  • The role of quorum sensing, biofilm formation, and iron acquisition as key virulence mechanisms in Acinetobacter baumannii and the corresponding anti-virulence strategies
    Soffi Kei Kei Law, Hock Siew Tan
    Microbiological Research.2022; 260: 127032.     CrossRef
  • Carboxy-Terminal Processing Protease Controls Production of Outer Membrane Vesicles and Biofilm in Acinetobacter baumannii
    Rakesh Roy, Ren-In You, Chan-Hua Chang, Chiou-Ying Yang, Nien-Tsung Lin
    Microorganisms.2021; 9(6): 1336.     CrossRef
  • ppGpp signaling plays a critical role in virulence of Acinetobacter baumannii
    Kyeongmin Kim, Maidul Islam, Hye-won Jung, Daejin Lim, Kwangsoo Kim, Sung-Gwon Lee, Chungoo Park, Je Chul Lee, Minsang Shin
    Virulence.2021; 12(1): 2122.     CrossRef
  • COG0523 proteins: a functionally diverse family of transition metal-regulated G3E P-loop GTP hydrolases from bacteria to man
    Katherine A Edmonds, Matthew R Jordan, David P Giedroc
    Metallomics.2021;[Epub]     CrossRef
  • The role of Zur-regulated lipoprotein A in bacterial morphology, antimicrobial susceptibility, and production of outer membrane vesicles in Acinetobacter baumannii
    Nayeong Kim, Hyo Jeong Kim, Man Hwan Oh, Se Yeon Kim, Mi Hyun Kim, Joo Hee Son, Seung Il Kim, Minsang Shin, Yoo Chul Lee, Je Chul Lee
    BMC Microbiology.2021;[Epub]     CrossRef
  • Insights Into Mechanisms of Biofilm Formation in Acinetobacter baumannii and Implications for Uropathogenesis
    Jennifer M. Colquhoun, Philip N. Rather
    Frontiers in Cellular and Infection Microbiology.2020;[Epub]     CrossRef

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