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- Composition and abundance of microbiota in the pharynx in patients with laryngeal carcinoma and vocal cord polyps
- Hongli Gong , Boyan Wang , Yi Shi , Yong Shi , Xiyan Xiao , Pengyu Cao , Lei Tao , Yuezhu Wang , Liang Zhou
- J. Microbiol. 2017;55(8):648-654. Published online July 28, 2017
- DOI: https://doi.org/10.1007/s12275-017-6636-8
- 66 View
- 0 Download
- 13 Crossref
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Abstract
- The pharynx is an important site of microbiota colonization, but the bacterial populations at this site have been relatively unexplored by culture-independent approaches. The aim of this study was to characterize the microbiota structure of the pharynx. Pyrosequencing of 16S rRNA gene libraries was used to characterize the pharyngeal microbiota using swab samples from 68 subjects with laryngeal cancer and 28 subjects with vocal cord polyps. Overall, the major phylum was Firmicutes, with Streptococcus as the predominant genus in the pharyngeal communities. Nine core operational taxonomic units detected from Streptococcus, Fusobacterium, Prevotella, Granulicatella, and Veillonella accounted for 21.3% of the total sequences detected. However, there was no difference in bacterial communities in the pharynx from patients with laryngeal cancer and vocal cord polyps. The relative abundance of Firmicutes was inversely correlated with Fusobacteria, Proteobacteria, Actinobacteria, and Bacteroidetes. The correlation was evident at the genus level, and the relative abundance of Streptococcus was inversely associated with Fusobacterium, Leptotrichia, Neisseria, Actinomyces, and Prevotella. This study presented a profile for the overall structure of the microbiota in pharyngeal swab samples. Inverse correlations were found between Streptococcus and other bacterial communities, suggesting that potential antagonism may exist among pharyngeal microbiota.
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Citations
Citations to this article as recorded by
- Effects of squamous cell carcinoma and smoking status on oropharyngeal and laryngeal microbial communities
Maximilian Oberste, Brit Elisabeth Böse, Luis Gustavo dos Anjos Borges, Howard Junca, Iris Plumeier, Silke Kahl, Frank Simon, Achim Georg Beule, Claudia Rudack, Dietmar H. Pieper
Head & Neck.2024; 46(1): 145. CrossRef - Comparison of the bacterial microbiome in the pharynx and nasal cavity of persistent, intermittent carriers and non-carriers of Staphylococcus aureus
Samuel González-García, Aida Hamdan-Partida, Julia Pérez-Ramos, José Félix Aguirre-Garrido, Anaíd Bustos-Hamdan, Jaime Bustos-Martínez
Journal of Medical Microbiology .2024;[Epub] CrossRef - Fusobacterium nucleatum impairs DNA mismatch repair and stability in patients with squamous cell carcinoma of the head and neck
Chi‐Yao Hsueh, Hui‐Ching Lau, Qiang Huang, Hongli Gong, Ji Sun, Pengyu Cao, Chunyan Hu, Ming Zhang, Lei Tao, Liang Zhou
Cancer.2022; 128(17): 3170. CrossRef - Raman fl uorescence technologies for early detection of infl ammatory and oncological disorders as a part of public health strategy and a tool for improving the quality of medical care: a review
A. B. Timurzieva
Laser Medicine.2022; 25(4): 42. CrossRef - Cross-comparison of microbiota in the oropharynx, hypopharyngeal squamous cell carcinoma and their adjacent tissues through quantitative microbiome profiling
Hui-Ching Lau, Yujie Shen, Huiying Huang, Xiaohui Yuan, Mengyou Ji, Hongli Gong, Chi-Yao Hsueh, Liang Zhou
Journal of Oral Microbiology.2022;[Epub] CrossRef - Oral microbiota in oropharyngeal cancers: Friend or foe?
Riccardo Nocini, Lorenzo Lo Muzio, Davide Gibellini, Giovanni Malerba, Michele Milella, Salvatore Chirumbolo, Nicoletta Zerman
Frontiers in Oncology.2022;[Epub] CrossRef - Oropharynx microbiota transitions in hypopharyngeal carcinoma treatment of induced chemotherapy followed by surgery
Hui-Ching Lau, Chi-Yao Hsueh, Hongli Gong, Ji Sun, Hui-Ying Huang, Ming Zhang, Liang Zhou
BMC Microbiology.2021;[Epub] CrossRef - The Role of Bacterial and Fungal Human Respiratory Microbiota in COVID-19 Patients
Saber Soltani, Armin Zakeri, Milad Zandi, Mina Mobini Kesheh, Alireza Tabibzadeh, Mahsa Dastranj, Samireh Faramarzi, Mojtaba Didehdar, Hossein Hafezi, Parastoo Hosseini, Abbas Farahani, Cassiano Felippe Gonçalves-de-Albuquerque
BioMed Research International.2021; 2021: 1. CrossRef - Selective Bacterial Colonization of the Murine Larynx in a Gnotobiotic Model
Ran An, Madhu Gowda, Federico E. Rey, Susan L. Thibeault
Frontiers in Microbiology.2020;[Epub] CrossRef - Throat Microbial Community Structure and Functional Changes in Postsurgery Laryngeal Carcinoma Patients
Chi-Yao Hsueh, Hongli Gong, Ning Cong, Ji Sun, Hui-Ching Lau, Yang Guo, Qiang Huang, Xiaohui Yuan, Ming Zhang, Lei Tao, Liang Zhou, Harold L. Drake
Applied and Environmental Microbiology.2020;[Epub] CrossRef - Fusobacterium spp. target human CEACAM1 via the trimeric autotransporter adhesin CbpF
Matthew L. Brewer, David Dymock, R. Leo Brady, Bernhard B. Singer, Mumtaz Virji, Darryl J. Hill
Journal of Oral Microbiology.2019; 11(1): 1565043. CrossRef - Quality and metagenomic evaluation of a novel functional beverage produced from soy whey using water kefir grains
Chuanhai Tu, Fidelis Azi, Jin Huang, Xiao Xu, Guangliang Xing, Mingsheng Dong
LWT.2019; 113: 108258. CrossRef - Potential role of microbiome in oncogenesis, outcome prediction and therapeutic targeting for head and neck cancer
Ester Orlandi, Nicola Alessandro Iacovelli, Vincenzo Tombolini, Tiziana Rancati, Antonella Polimeni, Loris De Cecco, Riccardo Valdagni, Francesca De Felice
Oral Oncology.2019; 99: 104453. CrossRef
- Effects of squamous cell carcinoma and smoking status on oropharyngeal and laryngeal microbial communities
- Detecting Nonculturable Bacteria in the Active Mycorrhizal Zone of the Pine Mushroom Tricholoma matsutake
- Ryota Kataoka , Zaki Anwar Siddiqui , Junichi Kikuchi , Masaki Ando , Rina Sriwati , Ai Nozaki , Kazuyoshi Futai
- J. Microbiol. 2012;50(2):199-206. Published online April 27, 2012
- DOI: https://doi.org/10.1007/s12275-012-1371-7
- 57 View
- 0 Download
- 29 Crossref
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Abstract
-
The fungus Tricholoma matsutake forms an ectomycorrhizal
relationship with pine trees. Its sporocarps often develop in a
circle, which is commonly known as a fairy ring. The fungus
produces a solid, compact, white aggregate of mycelia and
mycorrhizae beneath the fairy ring, which in Japanese is
called a ‘shiro’. In the present study, we used soil dilution
plating and molecular techniques to analyze the bacterial
communities within, beneath, and outside the T. matsutake
fairy ring. Soil dilution plating confirmed previous reports
that bacteria and actinomycetes are seldom present in the
soil of the active mycorrhizal zone of the T. matsutake shiro.
In addition, the results showed that the absence of bacteria
was strongly correlated with the presence of T. matsutake
mycorrhizae. The results demonstrate that bacteria, especially
aerobic and heterotrophic forms, and actinomycetes,
are strongly inhibited by T. matsutake. Indeed, neither bacteria
nor actinomycetes were detected in 11.3% of 213 soil
samples from the entire shiro area by culture-dependent
methods
. However, molecular techniques demonstrated that some bacteria, such as individual genera of Sphingomonas and Acidobacterium, were present in the active mycorrhizal zone, even though they were not detected in soil assays using the dilution plating technique. -
Citations
Citations to this article as recorded by- Fungal fairy rings: history, ecology, dynamics and engineering functions
Maurizio Zotti, Giuliano Bonanomi, Stefano Mazzoleni
IMA Fungus.2025;[Epub] CrossRef - Soil Fungal Diversity and Community Structure of Russula griseocarnosa from Different Sites
Zhen Li, Ruoxi Liang, Fei Yu
Microorganisms.2025; 13(3): 490. CrossRef - The Soil Bacterial Community Structure in a Lactarius hatsudake Tanaka Plantation during Harvest
Airong Shen, Yun Tan, Baoming Shen, Lina Liu, Jilie Li, Zhuming Tan, Liangbin Zeng
Microorganisms.2024; 12(7): 1376. CrossRef - Trichoderma yunnanense isolated from patchouli plant as a bio-conversion agent for solid organic waste
Muzakir Muzakir, Hifnalisa Hifnalisa, Jauharlina Jauharlina, Ananda Putri Muri, Nana Dahliati, Rina Sriwati
Case Studies in Chemical and Environmental Engineering.2024; 10: 101021. CrossRef - Diversity and Network Relationship Construction of Soil Fungal Communities in Lactarius hatsudake Tanaka Orchard during Harvest
Airong Shen, Baoming Shen, Lina Liu, Yun Tan, Liangbin Zeng, Zhuming Tan, Jilie Li
Microorganisms.2023; 11(9): 2279. CrossRef - Fungal Hyphosphere Microbiomes Are Distinct from Surrounding Substrates and Show Consistent Association Patterns
Nhu H. Nguyen, Frédérique Reverchon, Camille Truong, Adriana Romero-Olivares
Microbiology Spectrum.2023;[Epub] CrossRef - Dynamics of soil microbiome throughout the cultivation life cycle of morel (Morchella sextelata)
Chen Zhang, Xiaofei Shi, Jiexiong Zhang, Yesheng Zhang, Wen Wang
Frontiers in Microbiology.2023;[Epub] CrossRef - Fungal and bacterial communities in a forest relict of Pinus pseudostrobus var. coatepecensis
Y Baeza-Guzmán, SL Camargo-Ricalde, D Trejo Aguilar, NM Montaño
iForest - Biogeosciences and Forestry.2023; 16(6): 299. CrossRef - Cultivation studies of edible ectomycorrhizal mushrooms: successful establishment of ectomycorrhizal associations in vitro and efficient production of fruiting bodies
Akiyoshi Yamada
Mycoscience.2022; 63(6): 235. CrossRef - Identification and profiling of the community structure and potential function of bacteria from the fruiting bodies of Sanghuangporus vaninii
Yan-Jun Ma, Wei-Qian Gao, Xue-Tai Zhu, Wei-Bao Kong, Fan Zhang, Hong-Qin Yang
Archives of Microbiology.2022;[Epub] CrossRef - Fungal–Bacterial Networks in the Habitat of SongRong (Tricholoma matsutake) and Driving Factors of Their Distribution Rules
Rui-Qing Ji, Yang Xu, Yan-Ji Si, Chayanard Phukhamsakda, Yu Li, Li-Peng Meng, Shu-Yan Liu, Meng-Le Xie
Journal of Fungi.2022; 8(6): 575. CrossRef - Pyrosequencing and Taxonomic Composition of the Fungal Community from Soil of Tricholoma matsutake in Gyeongju
Minji Jeong, Doo-Ho Choi, Woo-Jae Cheon, Jong-Guk Kim
Journal of Microbiology and Biotechnology.2021; 31(5): 686. CrossRef - Riding the wave: Response of bacterial and fungal microbiota associated with the spread of the fairy ring fungus Calocybe gambosa
Maurizio Zotti, Giuliano Bonanomi, Giorgio Mancinelli, Marcia Barquero, Francesca De Filippis, Francesco Giannino, Stefano Mazzoleni, Fernando González-Andrés
Applied Soil Ecology.2021; 163: 103963. CrossRef - Fungal Interactions Matter: Tricholoma matsutake Domination Affect Fungal Diversity and Function in Mountain Forest Soils
Jie Zhou, Heng Gui, Shujiao Yang, Xuefei Yang, Lingling Shi
Biology.2021; 10(10): 1051. CrossRef - Cataloguing the bacterial diversity in the active ectomycorrhizal zone of Astraeus from a dry deciduous forest of Shorea
Vineet Vishal, Somnath Munda, Geetanjali Singh, Shalini Lal
Biodiversity Data Journal.2021;[Epub] CrossRef - Advances in the cultivation of the highly-prized ectomycorrhizal mushroom Tricholoma matsutake
Takashi Yamanaka, Akiyoshi Yamada, Hitoshi Furukawa
Mycoscience.2020; 61(2): 49. CrossRef - One ring to rule them all: an ecosystem engineer fungus fosters plant and microbial diversity in a Mediterranean grassland
Maurizio Zotti, Francesca De Filippis, Gaspare Cesarano, Danilo Ercolini, Giulio Tesei, Marina Allegrezza, Francesco Giannino, Stefano Mazzoleni, Giuliano Bonanomi
New Phytologist.2020; 227(3): 884. CrossRef - Bioactive properties of streptomyces may affect the dominance of Tricholoma matsutake in shiro
Lu-Min Vaario, Shumpei Asamizu, Tytti Sarjala, Norihisa Matsushita, Hiroyasu Onaka, Yan Xia, Hiroyuki Kurokochi, Shin-Ichi Morinaga, Jian Huang, Shijie Zhang, Chunlan Lian
Symbiosis.2020; 81(1): 1. CrossRef - Bacteria Associated With Shiraia Fruiting Bodies Influence Fungal Production of Hypocrellin A
Yan Jun Ma, Li Ping Zheng, Jian Wen Wang
Frontiers in Microbiology.2019;[Epub] CrossRef - The Influence of Microfungi on the Mycelial Growth of Ectomycorrhizal Fungus Tricholoma matsutake
Seung-Yoon Oh, Myung Soo Park, Young Woon Lim
Microorganisms.2019; 7(6): 169. CrossRef - Bacterial Profiling and Dynamic Succession Analysis of Phlebopus portentosus Casing Soil Using MiSeq Sequencing
Rui-Heng Yang, Da-Peng Bao, Ting Guo, Yan Li, Guang-Yan Ji, Kai-Ping Ji, Qi Tan
Frontiers in Microbiology.2019;[Epub] CrossRef - Root-associated bacteria influencing mycelial growth of Tricholoma matsutake (pine mushroom)
Seung-Yoon Oh, Young Woon Lim
Journal of Microbiology.2018; 56(6): 399. CrossRef - Effect of fruiting body bacteria on the growth of Tricholoma matsutake and its related molds
Seung-Yoon Oh, Misong Kim, John A. Eimes, Young Woon Lim, Kap-Hoon Han
PLOS ONE.2018; 13(2): e0190948. CrossRef - Diversity and effect of Trichoderma isolated from the roots of Pinus densiflora within the fairy ring of pine mushroom (Tricholoma matsutake)
Seung-Yoon Oh, Myung Soo Park, Hae Jin Cho, Young Woon Lim, Sung-Hwan Yun
PLOS ONE.2018; 13(11): e0205900. CrossRef - Effect of fairy ring bacteria on the growth of Tricholoma matsutake in vitro culture
Seung-Yoon Oh, Young Woon Lim
Mycorrhiza.2018; 28(5-6): 411. CrossRef - Bacterial Communities in Boreal Forest Mushrooms Are Shaped Both by Soil Parameters and Host Identity
Mari Pent, Kadri Põldmaa, Mohammad Bahram
Frontiers in Microbiology.2017;[Epub] CrossRef - Microbial diversity associated with Tricholoma matsutake fruiting bodies
Q. Li, Ch. Chen, P. Penttinen, Ch. Xiong, L. Zheng, W. Huang
Microbiology.2016; 85(5): 531. CrossRef - Distinctive Feature of Microbial Communities and Bacterial Functional Profiles in Tricholoma matsutake Dominant Soil
Seung-Yoon Oh, Jonathan J. Fong, Myung Soo Park, Young Woon Lim, Kap-Hoon Han
PLOS ONE.2016; 11(12): e0168573. CrossRef - Comparative analysis of bacterial diversity and communities inhabiting the fairy ring ofTricholoma matsutakeby barcoded pyrosequencing
M. Kim, H. Yoon, Y.E. Kim, Y.J. Kim, W.S. Kong, J.G. Kim
Journal of Applied Microbiology.2014; 117(3): 699. CrossRef
- Fungal fairy rings: history, ecology, dynamics and engineering functions
Research Support, Non-U.S. Gov't
- Analyses of Bacterial Communities in Meju, a Korean Traditional Fermented Soybean Bricks, by Cultivation-Based and Pyrosequencing Methods
- Yi-Seul Kim , Min-Cheol Kim , Soon-Wo Kwon , Soo-Jin Kim , In-Cheol Park , Jong-Ok Ka , Hang-Yeon Weon
- J. Microbiol. 2011;49(3):340-348. Published online June 30, 2011
- DOI: https://doi.org/10.1007/s12275-011-0302-3
- 55 View
- 0 Download
- 106 Scopus
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Abstract
- Despite the importance of meju as a raw material used to make Korean soy sauce (ganjang) and soybean paste (doenjang), little is known about the bacterial diversity of Korean meju. In this study, the bacterial communities in meju were examined using both culture-dependent and independent methods in order to evaluate the diversity of the bacterial population. Analyses of the 16S rRNA gene sequences of the bacterial strains isolated from meju samples showed that the dominant species were related to members of the genera Bacillus, Enterococcus, and Pediococcus. The community DNAs extracted from nine different meju samples were analyzed by barcoded pyrosequencing method targeting of the V1 to V3 hypervariable regions of the 16S rRNA gene. In total, 132,374 sequences, with an average read length of 468 bp, were assigned to several phyla, with Firmicutes (93.6%) representing the predominant phylum, followed by Proteobacteria (4.5%) and Bacteroidetes (0.8%). Other phyla accounted for less than 1% of the total bacterial sequences. Most of the Firmicutes were Bacillus and lactic acid bacteria, mainly represented by members of the genera Enterococcus, Lactococcus, and Leuconostoc, whose ratio varied among different samples. In conclusion, this study indicated that the bacterial communities in meju were very diverse and a complex microbial consortium containing various microorganisms got involved in meju fermentation than we expected before.
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