Journal of Microbiology

Reviews

The Role of Extracellular Vesicles in Pandemic Viral Infections: Woosung Shim, Anjae Lee, Jung-Hyun Lee; J. Microbiol. 2024;62(6):419-427. Published online June 25, 2024; DOI: https://doi.org/10.1007/s12275-024-00144-x

89 View
0 Download
2 Web of Science
1 Crossref

Extracellular vesicles (EVs), of diverse origin and content, are membranous structures secreted by a broad range of cell types. Recent advances in molecular biology have highlighted the pivotal role of EVs in mediating intercellular communication, facilitated by their ability to transport a diverse range of biomolecules, including proteins, lipids, DNA, RNA and metabolites. A striking feature of EVs is their ability to exert dual effects during viral infections, involving both proviral and antiviral effects. This review explores the dual roles of EVs, particularly in the context of pandemic viruses such as HIV-1 and SARS-CoV-2. On the one hand, EVs can enhance viral replication and exacerbate pathogenesis by transferring viral components to susceptible cells. On the other hand, they have intrinsic antiviral properties, including activation of immune responses and direct inhibition of viral infection. By exploring these contrasting functions, our review emphasizes the complexity of EV-mediated interactions in viral pathogenesis and highlights their potential as targets for therapeutic intervention. The insights obtained from investigating EVs in the context of HIV-1 and SARS-CoV-2 provide a deeper understanding of viral mechanisms and pathologies, and offer a new perspective on managing and mitigating the impact of these global health challenges.

Citations

Citations to this article as recorded by

Differential Impact of Spike Protein Mutations on SARS-CoV-2 Infectivity and Immune Evasion: Insights from Delta and Kappa Variants
Tae-Hun Kim, Sojung Bae, Jinjong Myoung
Journal of Microbiology and Biotechnology.2024; 34(12): 2506. CrossRef

Manganese Transporter Proteins in Salmonella enterica serovar Typhimurium: Nakyeong Ha , Eun-Jin Lee; J. Microbiol. 2023;61(3):289-296. Published online March 2, 2023; DOI: https://doi.org/10.1007/s12275-023-00027-7

75 View
0 Download
8 Web of Science
8 Crossref

Abstract

The metal cofactors are essential for the function of many enzymes. The host restricts the metal acquisition of pathogens for their immunity and the pathogens have evolved many ways to obtain metal ions for their survival and growth. Salmonella enterica serovar Typhimurium also needs several metal cofactors for its survival, and manganese has been found to contribute to Salmonella pathogenesis. Manganese helps Salmonella withstand oxidative and nitrosative stresses. In addition, manganese affects glycolysis and the reductive TCA, which leads to the inhibition of energetic and biosynthetic metabolism. Therefore, manganese homeostasis is crucial for full virulence of Salmonella. Here, we summarize the current information about three importers and two exporters of manganese that have been identified in Salmonella. MntH, SitABCD, and ZupT have been shown to participate in manganese uptake. mntH and sitABCD are upregulated by low manganese concentration, oxidative stress, and host NRAMP1 level. mntH also contains a Mn2+- dependent riboswitch in its 5′ UTR. Regulation of zupT expression requires further investigation. MntP and YiiP have been identified as manganese efflux proteins. mntP is transcr!ptionally activated by MntR at high manganese levels and repressed its activity by MntS at low manganese levels. Regulation of yiiP requires further analysis, but it has been shown that yiiP expression is not dependent on MntS. Besides these five transporters, there might be additional transporters that need to be identified.

Citations

Citations to this article as recorded by

Functional characterization of a TerC family protein of Riemerella anatipestifer in manganese detoxification and virulence
Qinyuan Chen, Fang Guo, Li Huang, Mengying Wang, Chunfeng Shi, Shutong Zhang, Yizhou Yao, Mingshu Wang, Dekang Zhu, Renyong Jia, Shun Chen, Xinxin Zhao, Qiao Yang, Ying Wu, Shaqiu Zhang, Bin Tian, Juan Huang, Xumin Ou, Qun Gao, Di Sun, Ling Zhang, Yanling
Applied and Environmental Microbiology.2024;[Epub] CrossRef
NO enhances the adaptability to high-salt environments by regulating osmotic balance, antioxidant defense, and ion homeostasis in eelgrass based on transcriptome and metabolome analysis
Xianyan Wang, Tongtong Wang, Pei Yu, Yuchun Li, Xinfang Lv
Frontiers in Plant Science.2024;[Epub] CrossRef
High-throughput fitness experiments reveal specific vulnerabilities of human-adapted Salmonella during stress and infection
Benjamin X. Wang, Dmitry Leshchiner, Lijuan Luo, Miles Tuncel, Karsten Hokamp, Jay C. D. Hinton, Denise M. Monack
Nature Genetics.2024; 56(6): 1288. CrossRef
Biological characteristics of manganese transporter MntP in Klebsiella pneumoniae
Wei Peng, Yafei Xu, Yilin Yin, Jichen Xie, Renhui Ma, Guoyuan Song, Zhiqiang Zhang, Qiuhang Quan, Qinggen Jiang, Moran Li, Bei Li, Michael David Leslie Johnson
mSphere.2024;[Epub] CrossRef
Exploring resource competition by protective lactic acid bacteria cultures to control Salmonella in food: an Achilles’ heel to target?
Ludovico Screpanti, Nathalie Desmasures, Margot Schlusselhuber
Critical Reviews in Food Science and Nutrition.2024; : 1. CrossRef
Substrate-Induced Structural Dynamics and Evolutionary Linkage of Siderophore-Iron ABC Transporters of Mycobacterium tuberculosis
Aisha Farhana, Abdullah Alsrhani, Hasan Ejaz, Muharib Alruwaili, Ayman A. M. Alameen, Emad Manni, Zafar Rasheed, Yusuf Saleem Khan
Medicina.2024; 60(11): 1891. CrossRef
Structures and coordination chemistry of transporters involved in manganese and iron homeostasis
Shamayeeta Ray, Rachelle Gaudet
Biochemical Society Transactions.2023; 51(3): 897. CrossRef
Bacterial Regulatory Mechanisms for the Control of Cellular Processes: Simple Organisms’ Complex Regulation
Jin-Won Lee
Journal of Microbiology.2023; 61(3): 273. CrossRef

Protective and pathogenic role of humoral responses in COVID-19: Uni Park , Nam-Hyuk Cho; J. Microbiol. 2022;60(3):268-275. Published online March 2, 2022; DOI: https://doi.org/10.1007/s12275-022-2037-8

66 View
0 Download
5 Web of Science
3 Crossref

Abstract

Since the advent of SARS-CoV-2 in Dec. 2019, the global endeavor to identify the pathogenic mechanism of COVID-19 has been ongoing. Although humoral immunity including neutralizing activity play an important role in protection from the viral pathogen, dysregulated antibody responses may be associated with the pathogenic progression of COVID-19, especially in high-risk individuals. In addition, SARS-CoV-2 spike-specific antibodies acquired by prior infection or vaccination act as immune pressure, driving continuous population turnover by selecting for antibody-escaping mutations. Here, we review accumulating knowledge on the potential role of humoral immune responses in COVID-19, primarily focusing on their beneficial and pathogenic properties. Understanding the multifaceted regulatory mechanisms of humoral responses during SARS-CoV-2 infection can help us to develop more effective therapeutics, as well as protective measures against the ongoing pandemic.

Citations

Citations to this article as recorded by

Rise in broadly cross-reactive adaptive immunity against human β-coronaviruses in MERS-recovered patients during the COVID-19 pandemic
So-Hee Kim, Yuri Kim, Sangeun Jeon, Uni Park, Ju-Il Kang, Kyeongseok Jeon, Hye-Ran Kim, Songhyeok Oh, Ji-Young Rhee, Jae-Phil Choi, Wan Beom Park, Sang Won Park, Jeong-Sun Yang, Joo-Yeon Lee, Jihye Kang, Hyoung-Shik Shin, Yeonjae Kim, Seungtaek Kim, Yeon-
Science Advances.2024;[Epub] CrossRef
Distinctive Combinations of RBD Mutations Contribute to Antibody Evasion in the Case of the SARS-CoV-2 Beta Variant
Tae-Hun Kim, Sojung Bae, Sunggeun Goo, Jinjong Myoung
Journal of Microbiology and Biotechnology.2023; 33(12): 1587. CrossRef
Two years of COVID-19 pandemic: where are we now?
Jinjong Myoung
Journal of Microbiology.2022; 60(3): 235. CrossRef

Transmissibility and pathogenicity of SARS-CoV-2 variants in animal models: Young-Il Kim , Mark Anthony B. Casel , Young Ki Choi; J. Microbiol. 2022;60(3):255-267. Published online March 2, 2022; DOI: https://doi.org/10.1007/s12275-022-2033-z

64 View
0 Download
11 Web of Science
9 Crossref

Abstract

As of February 2022, SARS-CoV-2 is still one of the most serious public health threats due to its high mortality rate and rapid spread of novel variants. Since the first outbreak in 2019, general understanding of SARS-CoV-2 has been improved through basic and clinical studies; however, knowledge gaps still exist in our understanding of the emerging novel SARSCoV- 2 variants, which impacts the corresponding development of vaccines and therapeutics. Especially, accumulation of mutations in SARS-CoV-2 and rapid spread in populations with previous immunity has resulted in selection of variants that evade the host immune response. This phenomenon threatens to render current SARS-CoV-2 vaccines ineffective for controlling the pandemic. Proper animal models are essential for detailed investigations into the viral etiology, transmission and pathogenesis mechanisms, as well as evaluation of the efficacy of vaccine candidates against recent SARS-CoV-2 variants. Further, the choice of animal model for each research topic is important for researchers to gain better knowledge of recent SARS-CoV-2 variants. Here, we review the advantages and limitations of each animal model, including mice, hamsters, ferrets, and non-human primates, to elucidate variant SARS-CoV-2 etiology and transmission and to evaluate therapeutic and vaccine efficacy.

Citations

Citations to this article as recorded by

In vivo characterization of ACE2 expression in Sprague-Dawley rats and cultured primary brain pericytes highlights the utility of Rattus norvegicus in the study of COVID-19 brain pathophysiology
Eugene Park, Elaine Liu, Andrew J. Baker
Brain Research.2025; 1848: 149333. CrossRef
Utilizing non‐human primate models to combat recent COVID‐19/SARS‐CoV‐2 and viral infectious disease outbreaks
Taeho Kwon
Journal of Medical Primatology.2024;[Epub] CrossRef
Early detection of highly transmissible viral variants using phylogenomics
Michael R. May, Bruce Rannala
Science Advances.2024;[Epub] CrossRef
Animal Models, Zoonotic Reservoirs, and Cross-Species Transmission of Emerging Human-Infecting Coronaviruses
Yakhouba Kane, Gary Wong, George F. Gao
Annual Review of Animal Biosciences.2023; 11(1): 1. CrossRef
SARS-CoV-2 Aerosol and Intranasal Exposure Models in Ferrets
Elizabeth E. Zumbrun, Samantha E. Zak, Eric D. Lee, Philip A. Bowling, Sara I. Ruiz, Xiankun Zeng, Jeffrey W. Koehler, Korey L. Delp, Russel R. Bakken, Shannon S. Hentschel, Holly A. Bloomfield, Keersten M. Ricks, Tamara L. Clements, April M. Babka, John
Viruses.2023; 15(12): 2341. CrossRef
The Isolation and In Vitro Differentiation of Primary Fetal Baboon Tracheal Epithelial Cells for the Study of SARS-CoV-2 Host-Virus Interactions
Bharathiraja Subramaniyan, Sunam Gurung, Manish Bodas, Andrew R. Moore, Jason L. Larabee, Darlene Reuter, Constantin Georgescu, Jonathan D. Wren, Dean A. Myers, James F. Papin, Matthew S. Walters
Viruses.2023; 15(4): 862. CrossRef
Distinctive Combinations of RBD Mutations Contribute to Antibody Evasion in the Case of the SARS-CoV-2 Beta Variant
Tae-Hun Kim, Sojung Bae, Sunggeun Goo, Jinjong Myoung
Journal of Microbiology and Biotechnology.2023; 33(12): 1587. CrossRef
Two years of COVID-19 pandemic: where are we now?
Jinjong Myoung
Journal of Microbiology.2022; 60(3): 235. CrossRef
SARS CoV-2 (Delta Variant) Infection Kinetics and Immunopathogenesis in Domestic Cats
Miruthula Tamil Selvan, Sachithra Gunasekara, Ping Xiao, Kristen Griffin, Shannon R. Cowan, Sai Narayanan, Akhilesh Ramachandran, Darren E. Hagen, Jerry W. Ritchey, Jennifer M. Rudd, Craig A. Miller
Viruses.2022; 14(6): 1207. CrossRef

Journal Articles

Garden microbiomes of Apterostigma dentigerum and Apterostigma pilosum fungus-growing ants (Hymenoptera: Formicidae): Cely T. González , Kristin Saltonstall , Hermógenes Fernández-Marín; J. Microbiol. 2019;57(10):842-851. Published online August 3, 2019; DOI: https://doi.org/10.1007/s12275-019-8639-0

43 View
0 Download
5 Web of Science
5 Crossref

Abstract

Fungus-growing ants share a complex symbiosis with microbes, including fungal mutualists, antibiotic-producing bacteria, and fungal pathogens. The bacterial communities associated with this symbiosis are poorly understood but likely play important roles in maintaining the health and function of fungal gardens. We studied bacterial communities in gardens of two Apterostigma species, A. dentigerum, and A. pilosum, using next-generation sequencing to evaluate differences between the two ant species, their veiled and no-veiled fungal garden types, and across three collection locations. We also compared different parts of nests to test for homogeneity within nests. Enterobacteriaceae dominated gardens of both species and common OTUs were shared across both species and nest types. However, differences in community diversity were detected between ant species, and in the communities of A. dentigerum veiled and no-veiled nests within sites. Apterostigma pilosum had a higher proportion of Phyllobacteriaceae and differed from A. dentigerum in the proportions of members of the order Clostridiales. Within A. dentigerum, nests with veiled and no-veiled fungus gardens had similar taxonomic profiles but differed in the relative abundance of some groups, with veiled gardens having more Rhodospirillaceae and Hyphomicrobiaceae, and no-veiled having more Xanthomonadaceae and certain genera in the Enterobacteriaceae C. However, bacterial communities in Apterostigma fungal gardens are highly conserved and resemble those of the nests of other attine ants with dominant taxa likely playing a role in biomass degradation and defense. Further work is required to understand and explain how bacterial community composition of fungus-growing nests is maintained.

Citations

Citations to this article as recorded by

The mobilome landscape of biocide-resistance in Brazilian ESKAPE isolates
Elias Eduardo Barbosa da Rosa, Frederico Schmitt Kremer
Brazilian Journal of Microbiology.2024;[Epub] CrossRef
Pharmacological potential of ants and their symbionts – a review
Surbhi Agarwal, Garima Sharma, Kavita Verma, Narayanan Latha, Vartika Mathur
Entomologia Experimentalis et Applicata.2022; 170(12): 1032. CrossRef
Disease management in two sympatric Apterostigma fungus‐growing ants for controlling the parasitic fungus Escovopsis
Yuliana Christopher, William T. Wcislo, Sergio Martínez‐Luis, William O.H. Hughes, Nicole M. Gerardo, Hermógenes Fernández‐Marín
Ecology and Evolution.2021; 11(11): 6041. CrossRef
The Microbiome of Neotropical Water Striders and Its Potential Role in Codiversification
Anakena M. Castillo, Kristin Saltonstall, Carlos F. Arias, Karina A. Chavarria, Luis A. Ramírez-Camejo, Luis C. Mejía, Luis F. De León
Insects.2020; 11(9): 578. CrossRef
Bacteria Contribute to Plant Secondary Compound Degradation in a Generalist Herbivore System
Charlotte B. Francoeur, Lily Khadempour, Rolando D. Moreira-Soto, Kirsten Gotting, Adam J. Book, Adrián A. Pinto-Tomás, Ken Keefover-Ring, Cameron R. Currie, Margaret J. McFall-Ngai
mBio.2020;[Epub] CrossRef

Assembly mechanisms of soil bacterial communities in subalpine coniferous forests on the Loess Plateau, China: Pengyu Zhao , Jinxian Liu , Tong Jia , Zhengming Luo , Cui Li , Baofeng Chai; J. Microbiol. 2019;57(6):461-469. Published online May 27, 2019; DOI: https://doi.org/10.1007/s12275-019-8373-7

52 View
0 Download
7 Web of Science
6 Crossref

Abstract

Microbial community assembly is affected by trade-offs between deterministic and stochastic processes. However, the mechanisms underlying the relative influences of the two processes remain elusive. This knowledge gap limits our ability to understand the effects of community assembly processes on microbial community structures and functions. To better understand community assembly mechanisms, the community dynamics of bacterial ecological groups were investigated based on niche breadths in 23 soil plots from subalpine coniferous forests on the Loess Plateau in Shanxi, China. Here, the overall community was divided into the ecological groups that corresponded to habitat generalists, ‘other taxa’ and specialists. Redundancy analysis based on Bray-Curtis distances (db-RDA) and multiple regression tree (MRT) analysis indicated that soil organic carbon (SOC) was a general descriptor that encompassed the environmental gradients by which the communities responded to, because it can explain more significant variations in community diversity patterns. The three ecological groups exhibited different niche optima and degrees of specialization (i.e., niche breadths) along the SOC gradient, suggesting the presence of a gradient in tolerance for environmental heterogeneity. The inferred community assembly processes varied along the SOC gradient, wherein a transition was observed from homogenizing dispersal to variable selection that reflects increasing deterministic processes. Moreover, the ecological groups were inferred to perform different community functions that varied with community composition, structure. In conclusion, these results contribute to our understanding of the trade-offs between community assembly mechanisms and the responses of community structure and function to environmental gradients.

Citations

Citations to this article as recorded by

Stochastic Processes Dominate the Assembly of Soil Bacterial Communities of Land Use Patterns in Lesser Khingan Mountains, Northeast China
Junnan Ding, Shaopeng Yu
Life.2024; 14(11): 1407. CrossRef
Diversity, composition, metabolic characteristics, and assembly process of the microbial community in sewer system at the early stage
Yiming Yuan, Guangyi Zhang, Hongyuan Fang, Haifeng Guo, Yongkang Li, Zezhuang Li, Siwei Peng, Fuming Wang
Environmental Science and Pollution Research.2024; 31(9): 13075. CrossRef
Community assembly of bacterial generalists and specialists and their network characteristics in different altitudinal soils on Fanjing Mountain in Southwest China
Zhenming Zhang, Xianliang Wu, Jiachun Zhang, Yingying Liu, Wenmin Luo, Guiting Mou
CATENA.2024; 238: 107863. CrossRef
Ammonia-oxidizing archaea adapted better to the dark, alkaline oligotrophic karst cave than their bacterial counterparts
Qing Li, Xiaoyu Cheng, Xiaoyan Liu, Pengfei Gao, Hongmei Wang, Chuntian Su, Qibo Huang
Frontiers in Microbiology.2024;[Epub] CrossRef
Full-length 16S rRNA gene sequencing reveals the operating mode and chlorination-aggravated SWRO biofouling at a nuclear power plant
Kaijia Ren, Hongxia Ming, Siyu Liu, Xianlong Lang, Yuan Jin, Jingfeng Fan
Water Science & Technology.2024; 90(1): 1. CrossRef
Kalidium cuspidatum colonization changes the structure and function of salt crust microbial communities
Yaqing Pan, Peng Kang, Yaqi Zhang, Xinrong Li
Environmental Science and Pollution Research.2024; 31(13): 19764. CrossRef

Cecal microbiome divergence of broiler chickens by sex and body weight: Kyu-Chan Lee , Dong Yong Kil , Woo Jun Sul; J. Microbiol. 2017;55(12):939-945. Published online December 7, 2017; DOI: https://doi.org/10.1007/s12275-017-7202-0

45 View
0 Download
71 Crossref

Abstract

The divergence of gut bacterial community on broiler chickens has been reported as potentially possible keys to enhancing nutrient absorption, immune systems, and increasing poultry health and performance. Thus, we compared cecal bacterial communities and functional predictions by sex and body weight regarding the association between cecal microbiota and chicken growth performance. In this study, a total of 12 male and 12 female 1-day-old broiler chickens were raised for 35 days in 2 separate cages. Chickens were divided into 3 subgroups depending on body weight (low, medium, and high) by each sex. We compared chicken cecal microbiota compositions and its predictive functions by sex and body weight difference. We found that bacterial 16S rRNA genes were classified as 3 major phyla (Bacteroidetes, Firmicutes, and Proteobacteria), accounting for > 98% of the total bacterial community. The profiling of different bacterial taxa and predictive metagenome functions derived from 16S rRNA genes were performed over chicken sex and bodyweight. Male chickens were related to the enrichment of Bacteroides while female chickens were to the enrichment of Clostridium and Shigella. Male chickens with high body weight were associated with the enrichment of Faecalibacterium and Shuttleworthia. Carbohydrate and lipid metabolisms were suggested as candidate functions for weight gain in the males. This suggests that the variation of cecal bacterial communities and their functions by sex and body weight may be associated with the differences in the growth potentials of broiler chickens.

Citations

Citations to this article as recorded by

Dietary ethylenediamine dihydroiodide mitigated Escherichia coli O78-induced immune and intestinal damage of ducks via suppression of NF-κB signal
Yanru Liang, Yaqi Chang, Yueqin Xie, Qinteng Hou, Hua Zhao, Guangmang Liu, Xiaoling Chen, Gang Tian, Jingyi Cai, Gang Jia
Poultry Science.2024; 103(5): 103610. CrossRef
The effect of sex and dietary crude protein level on nutrient transporter gene expression and cecal microbiota populations in broiler chickens
Ashley D. England, Sara de las Heras-Saldana, Kosar Gharib-Naseri, Sarbast K. Kheravii, Shu-Biao Wu
Poultry Science.2024; 103(2): 103268. CrossRef
Morphological features of the feral pigeon’s (Columba livia f. urbana) digestive system
I. O. Кolomak
Journal for Veterinary Medicine, Biotechnology and Biosafety.2024; 10(1): 7. CrossRef
Microbial community profiling in intestinal tract of indigenous chickens from different villages
Mokoma Eunice Mootane, Thendo Mafuna, Tondani Madeleine Ramantswana, Dikeledi Petunia Malatji
Scientific Reports.2024;[Epub] CrossRef
The Effect of including a Mixed-Enzyme Product in Broiler Diets on Performance, Metabolizable Energy, Phosphorus and Calcium Retention
Harriet Walker, Suvi Vartiainen, Juha Apajalahti, Jules Taylor-Pickard, Ivana Nikodinoska, Colm A. Moran
Animals.2024; 14(2): 328. CrossRef
Integrating microbial 16S rRNA sequencing and non-targeted metabolomics to reveal sexual dimorphism of the chicken cecal microbiome and serum metabolome
Yongxian Yang, Fuping Zhang, Xuan Yu, Liqi Wang, Zhong Wang
Frontiers in Microbiology.2024;[Epub] CrossRef
Dynamic effects of black soldier fly larvae meal on the cecal bacterial microbiota and prevalence of selected antimicrobial resistant determinants in broiler chickens
Calvin Ho-Fung Lau, Sabrina Capitani, Yuan-Ching Tien, Lou Ann Verellen, Munene Kithama, Hellen Kang, Elijah G. Kiarie, Edward Topp, Moussa S. Diarra, Michael Fruci
Animal Microbiome.2024;[Epub] CrossRef
Assessing the impact of hatching system and body weight on the growth performance, caecal short-chain fatty acids, and microbiota composition and functionality in broilers
Muhammad Zeeshan Akram, Ester Arévalo Sureda, Luke Comer, Matthias Corion, Nadia Everaert
Animal Microbiome.2024;[Epub] CrossRef
Are there consistent effects of gut microbiota composition on performance, productivity and condition in poultry?
Kateřina Marková, Jakub Kreisinger, Michal Vinkler
Poultry Science.2024; 103(6): 103752. CrossRef
Sex‐specific genetic parameter estimates of body weight in Mazandaran indigenous chickens
Mohammad Esmaeili, Mohsen Gholizadeh, Hasan Hafezian, Ayoub Farhadi
Journal of Animal Breeding and Genetics.2024; 141(4): 465. CrossRef
A catalog of microbial genes and metagenome-assembled genomes from the quail gut microbiome
Xinwei Xiong, Yousheng Rao, Jinge Ma, Zhangfeng Wang, Qin He, Jishang Gong, Wentao Sheng, Jiguo Xu, Xuenong Zhu, Yuwen Tan, Yanbei Yang
Poultry Science.2023; 102(10): 102931. CrossRef
Plant essential oils improve growth performance by increasing antioxidative capacity, enhancing intestinal barrier function, and modulating gut microbiota in Muscovy ducks
Chaoyue Ge, Xinyu Luo, Lianchi Wu, Yujie Lv, Zhaoying Hu, Dongyou Yu, Bing Liu
Poultry Science.2023; 102(8): 102813. CrossRef
The Development of Gut Microbiota and Its Changes Following C. jejuni Infection in Broilers
Walid Ghazi Al Hakeem, Keila Y. Acevedo Villanueva, Ramesh K. Selvaraj
Vaccines.2023; 11(3): 595. CrossRef
Growing Patterns of the Branca Chicken Breed—Concentrate vs. Maize-Based Diet
Laura Soares, Fernando Mata, Joaquim L. Cerqueira, José Araújo
Agriculture.2023; 13(12): 2282. CrossRef
Regulation of poultry lipid metabolism by dietary fibre: a review
Hua Zhou, Lei Yang, Tiande Zou, Qiufen Li, Mingren Qu, Jingming You, Guanhong Li
World's Poultry Science Journal.2023; 79(3): 485. CrossRef
Effect of water supplementation of Magic oil at different growing periods on growth performance, carcass traits, blood biochemistry, and ileal histomorphology of broiler chickens
Elsayed O.S. Hussein, Gamaleldin M. Suliman, Abdullah N. Al-Owaimer, Hani H. Al-Baadani, Maged A. Al-Garadi, Hani A. Ba-Awadh, Mohammed M. Qaid, Ayman A. Swelum
Poultry Science.2023; 102(8): 102775. CrossRef
Versatile, vigilance, and gut microbiome support the priority of high-ranking hens
Zhijiang Xie, Limin Xing, Mengqiao Zhao, Lei Zhao, Jinling Liu, Yushan Li, Jiankang Gan, Siyu Chen, Hua Li
Frontiers in Veterinary Science.2023;[Epub] CrossRef
Anaerobutyricum and Subdoligranulum Are Differentially Enriched in Broilers with Disparate Weight Gains
Jing Liu, Kelsy Robinson, Wentao Lyu, Qing Yang, Jing Wang, Karen D. Christensen, Guolong Zhang
Animals.2023; 13(11): 1834. CrossRef
Inonotus obliquus polysaccharide are linear molecules that alter the abundance and composition of intestinal microbiota in Sprague Dawley rats
Songqing Liu, Wenjing Zhou, Xin Deng, Wei Jiang, Yanping Wang, Jiasui Zhan, Binhong Hu
Frontiers in Nutrition.2023;[Epub] CrossRef
Host genotype affects endotoxin release in excreta of broilers at slaughter age
F. Marcato, J. M. J. Rebel, S. K. Kar, I. M. Wouters, D. Schokker, A. Bossers, F. Harders, J. W. van Riel, M. Wolthuis-Fillerup, I. C. de Jong
Frontiers in Genetics.2023;[Epub] CrossRef
Phenotype Alterations in the Cecal Ecosystem Involved in the Asymptomatic Intestinal Persistence of Paratyphoid Salmonella in Chickens
Michael H. Kogut, Mariano Enrique Fernandez Miyakawa
Animals.2023; 13(18): 2824. CrossRef
Long-Term Dietary Fish Meal Substitution with the Black Soldier Fly Larval Meal Modifies the Caecal Microbiota and Microbial Pathway in Laying Hens
Junliang Zhao, Takuma Ban, Hironori Miyawaki, Hirofumi Hirayasu, Akihisa Izumo, Shun-ichiro Iwase, Koji Kasai, Kiyonori Kawasaki
Animals.2023; 13(16): 2629. CrossRef
Sex-based responses of heat stress and subsequent recovery on the growth performance, metabolic changes, and redox status of broilers at market age
Ding Jinxue, Sun Shiang, Song Kai, Xiong Yongjie, He Shaojun
International Journal of Biometeorology.2023; 67(10): 1669. CrossRef
Dietary fiber modulates abdominal fat deposition associated with cecal microbiota and metabolites in yellow chickens
Xiaoyan Cui, Zhongyong Gou, Zongyong Jiang, Long Li, Xiajing Lin, Qiuli Fan, Yibing Wang, Shouqun Jiang
Poultry Science.2022; 101(4): 101721. CrossRef
Microbiota and Transcriptomic Effects of an Essential Oil Blend and Its Delivery Route Compared to an Antibiotic Growth Promoter in Broiler Chickens
Samson Oladokun, K. Fraser Clark, Deborah I. Adewole
Microorganisms.2022; 10(5): 861. CrossRef
Effect of stocking density on performance, meat quality and cecal bacterial communities of yellow feather broilers
Laidi Wang, Lingling Kong, Xiaodan Hu, Hao Bai, Zhixiu Wang, Yong Jiang, Yulin Bi, Guobin Chang, Guohong Chen
Animal Biotechnology.2022; 33(6): 1322. CrossRef
Potential Probiotics Role in Excluding Antibiotic Resistance
Irfan Ahmed, Zhengtian Li, Sharoon Shahzad, Saima Naveed, Ahmad Kamran Khan, Ayesha Ahmed, Zahid Kamran, Muhammad Yousaf, Shakeel Ahmad, Gulnaz Afzal, Hafiz Ishfaq Ahmad, Nasim Ahmad Yasin, Junjing Jia, Mubashir Hussain, Shahzad Munir, Ali Akbar
Journal of Food Quality.2022; 2022: 1. CrossRef
Delayed access to feed early post-hatch affects the development and maturation of gastrointestinal tract microbiota in broiler chickens
Monika Proszkowiec-Weglarz, Katarzyna B. Miska, Laura E. Ellestad, Lori L. Schreier, Stanislaw Kahl, Nadia Darwish, Philip Campos, Jonathan Shao
BMC Microbiology.2022;[Epub] CrossRef
Effect of Two Soybean Varieties Treated with Different Heat Intensities on Ileal and Caecal Microbiota in Broiler Chickens
Florian Hemetsberger, Benjamin Zwirzitz, Nadia Yacoubi, Wolfgang Kneifel, Karl Schedle, Konrad J. Domig
Animals.2022; 12(9): 1109. CrossRef
Comparison of organic acids supplementation on the growth performance, intestinal characteristics and morphology, and cecal microflora in broilers fed corn-soybean meal diet
Hao Yang Sun, Hong Bin Zhou, Yang Liu, Yue Wang, Cheng Zhao, Liang Mei Xu
Animal Bioscience.2022; 35(11): 1689. CrossRef
Centennial Review: Factors affecting the chicken gastrointestinal microbial composition and their association with gut health and productive performance
Yugal Raj Bindari, Priscilla F. Gerber
Poultry Science.2022; 101(1): 101612. CrossRef
A carvacrol-based product reduces Campylobacter jejuni load and alters microbiota composition in the caeca of chickens
Marion Allaoua, Elsa Bonnafé, Pierre Etienne, Virginie Noirot, Jean-François Gabarrou, Adrien Castinel, Géraldine Pascal, Vincent Darbot, Michel Treilhou, Sylvie Combes
Journal of Applied Microbiology.2022; 132(6): 4501. CrossRef
The replacement of bacitracin methylene disalicylate with Bacillus subtilis PB6 in the diet of male Cherry Valley Ducks reduces the feed conversion ratio by improving intestinal health and modulating gut microbiota
Qianqian Zhang, Jian Li, Guixiang Wang, Lizhi Wang, Zhiming Zhang, Zhengfeng Fang, Yan Lin, Shengyu Xu, Bin Feng, Yong Zhuo, Lun Hua, Xuemei Jiang, Xilun Zhao, De Wu, Lianqiang Che
Poultry Science.2022; 101(11): 102155. CrossRef
Novel strategies to improve chicken performance and welfare by unveiling host-microbiota interactions through hologenomics
Núria Tous, Sofia Marcos, Farshad Goodarzi Boroojeni, Ana Pérez de Rozas, Jürgen Zentek, Andone Estonba, Dorthe Sandvang, M. Thomas P. Gilbert, Enric Esteve-Garcia, Robert Finn, Antton Alberdi, Joan Tarradas
Frontiers in Physiology.2022;[Epub] CrossRef
Role of Physiology, Immunity, Microbiota, and Infectious Diseases in the Gut Health of Poultry
Samiru S. Wickramasuriya, Inkyung Park, Kyungwoo Lee, Youngsub Lee, Woo H. Kim, Hyoyoun Nam, Hyun S. Lillehoj
Vaccines.2022; 10(2): 172. CrossRef
The avian gut microbiota: Diversity, influencing factors, and future directions
Fengfei Sun, Junfeng Chen, Kai Liu, Meizhen Tang, Yuewei Yang
Frontiers in Microbiology.2022;[Epub] CrossRef
A Probabilistic Structural Equation Model to Evaluate Links between Gut Microbiota and Body Weights of Chicken Fed or Not Fed Insect Larvae
Johann Detilleux, Nassim Moula, Edwin Dawans, Bernard Taminiau, Georges Daube, Pascal Leroy
Biology.2022; 11(3): 357. CrossRef
Feed Safety and the Development of Poultry Intestinal Microbiota
Dragana Stanley, Yadav Sharma Bajagai
Animals.2022; 12(20): 2890. CrossRef
Factors Affecting Breast Myopathies in Broiler Chickens and Quality of Defective Meat: A Meta-Analysis
Francesco Bordignon, Gerolamo Xiccato, Marija Boskovic Cabrol, Marco Birolo, Angela Trocino
Frontiers in Physiology.2022;[Epub] CrossRef
Effects of therapeutic levels of dietary antibiotics on the cecal microbiome composition of broiler chickens
Seyed Hossien Kairmi, Khaled Taha-Abdelaziz, Alexander Yitbarek, Mehdi Sargolzaei, Heidi Spahany, Jake Astill, Bahram Shojadoost, Mohammadali Alizadeh, Raveendra R. Kulkarni, John Parkinson, Shayan Sharif
Poultry Science.2022; 101(6): 101864. CrossRef
Taxonomic and predicted functional signatures reveal linkages between the rumen microbiota and feed efficiency in dairy cattle raised in tropical areas
Priscila Fregulia, Mariana Magalhães Campos, Roberto Júnio Pedroso Dias, Junhong Liu, Wei Guo, Luiz Gustavo Ribeiro Pereira, Marco Antônio Machado, Daniele Ribeiro de Lima Reis Faza, Le Luo Guan, Phil C. Garnsworthy, André Luis Alves Neves
Frontiers in Microbiology.2022;[Epub] CrossRef
Effect of Salmonella Typhimurium Colonization on Microbiota Maturation and Blood Leukocyte Populations in Broiler Chickens
Kelsy Robinson, Anna L. F. V. Assumpcao, Komala Arsi, Gisela F. Erf, Annie Donoghue, Palmy R. R. Jesudhasan
Animals.2022; 12(20): 2867. CrossRef
Caecal microbial communities, functional diversity, and metabolic pathways in Ross 308 broiler chickens fed with diets containing different levels of Marama (Tylosema esculentum) bean meal
Peter Kotsoana Montso, Caven Mguvane Mnisi, Ayansina Segun Ayangbenro
Frontiers in Microbiology.2022;[Epub] CrossRef
Microbiota populations and short-chain fatty acids production in cecum of immunosuppressed broilers consuming diets containing γ-irradiated Astragalus polysaccharides
Y.S. Liu, S. Li, X.F. Wang, T. Xing, J.L. Li, X.D. Zhu, L. Zhang, F. Gao
Poultry Science.2021; 100(1): 273. CrossRef
Effects of Clostridium butyricum, Sodium Butyrate, and Butyric Acid Glycerides on the Reproductive Performance, Egg Quality, Intestinal Health, and Offspring Performance of Yellow-Feathered Breeder Hens
Yibing Wang, Yang Wang, Xiajing Lin, Zhongyong Gou, Qiuli Fan, Shouqun Jiang
Frontiers in Microbiology.2021;[Epub] CrossRef
The link between broiler flock heterogeneity and cecal microbiome composition
Randi Lundberg, Christian Scharch, Dorthe Sandvang
Animal Microbiome.2021;[Epub] CrossRef
Changes in the ceca microbiota of broilers vaccinated for coccidiosis or supplemented with salinomycin
C. Orso, T.B. Stefanello, C.H. Franceschi, M.B. Mann, A.P.M. Varela, I.M.S. Castro, J. Frazzon, A.P.G. Frazzon, I. Andretta, A.M.L. Ribeiro
Poultry Science.2021; 100(4): 100969. CrossRef
Highly Fermentable Fiber Alters Fecal Microbiota and Mitigates Swine Dysentery Induced by Brachyspira hyodysenteriae
Emma T. Helm, Nicholas K. Gabler, Eric. R. Burrough
Animals.2021; 11(2): 396. CrossRef
Sex differences in growth performance are related to cecal microbiota in chicken
Lei Cui, Xiaolong Zhang, Ranran Cheng, Abdur Rahman Ansari, Abdelmotaleb A. Elokil, Yafang Hu, Yan Chen, Abdallah A. Nafady, Huazhen Liu
Microbial Pathogenesis.2021; 150: 104710. CrossRef
Metagenomic Analysis Identifies Sex-Related Cecal Microbial Gene Functions and Bacterial Taxa in the Quail
Jing-E Ma, Xin-Wei Xiong, Ji-Guo Xu, Ji-Shang Gong, Jin Li, Qiao Xu, Yuan-Fei Li, Yang-Bei Yang, Min Zhou, Xue-Nong Zhu, Yu-Wen Tan, Wen-Tao Sheng, Zhang-Feng Wang, Xu-Tang Tu, Cheng-Yao Zeng, Xi-Quan Zhang, You-Sheng Rao
Frontiers in Veterinary Science.2021;[Epub] CrossRef
The digestive and reproductive tract microbiotas and their association with body weight in laying hens
Yuan Su, Yile Ge, Zhongxian Xu, Dejing Zhang, Diyan Li
Poultry Science.2021; 100(11): 101422. CrossRef
Factors Influencing the Succession of the Fecal Microbiome in Broilers
Dirkjan Schokker, Britt de Klerk, Randy Borg, Alex Bossers, Johanna M.J. Rebel
Livestock Science.2021; 247: 104486. CrossRef
Effects of Xylanase in Corn- or Wheat-Based Diets on Cecal Microbiota of Broilers
Jian Wang, Heng Cao, Chengling Bao, Yajing Liu, Bing Dong, Chunlin Wang, Zhenda Shang, Yunhe Cao, Suozhu Liu
Frontiers in Microbiology.2021;[Epub] CrossRef
Effects of rearing system (floor vs. cage) and sex on performance, meat quality and enteric microorganism of yellow feather broilers
Lai-di WANG, Yang ZHANG, Ling-ling KONG, Zhi-xiu WANG, Hao BAI, Yong JIANG, Yu-lin BI, Guo-bin CHANG, Guo-hong CHEN
Journal of Integrative Agriculture.2021; 20(7): 1907. CrossRef
A reasonable correlation between cloacal and cecal microbiomes in broiler chickens
Nadia A. Andreani, Caroline J. Donaldson, Matthew Goddard
Poultry Science.2020; 99(11): 6062. CrossRef
Green Tea and Pomegranate Extract Administered During Critical Moments of the Production Cycle Improves Blood Antiradical Activity and Alters Cecal Microbial Ecology of Broiler Chickens
Vera Perricone, Marcello Comi, Carlotta Giromini, Raffaella Rebucci, Alessandro Agazzi, Giovanni Savoini, Valentino Bontempo
Animals.2020; 10(5): 785. CrossRef
Respiratory and Gut Microbiota in Commercial Turkey Flocks with Disparate Weight Gain Trajectories Display Differential Compositional Dynamics
Kara J. M. Taylor, John M. Ngunjiri, Michael C. Abundo, Hyesun Jang, Mohamed Elaish, Amir Ghorbani, Mahesh KC, Bonnie P. Weber, Timothy J. Johnson, Chang-Won Lee, Edward G. Dudley
Applied and Environmental Microbiology.2020;[Epub] CrossRef
Metagenomic analysis reveals linkages between cecal microbiota and feed efficiency in Xiayan chickens
Wenya Du, Jixian Deng, Zhuliang Yang, Linghu Zeng, Xiurong Yang
Poultry Science.2020; 99(12): 7066. CrossRef
Effects of Rearing Conditions and Sex on Cecal Microbiota in Ducks
Chunhong Zhu, Wenjuan Xu, Zhiyun Tao, Weitao Song, Hongxiang Liu, Shuangjie Zhang, Huifang Li
Frontiers in Microbiology.2020;[Epub] CrossRef
Effects of Eimeria maxima and Clostridium perfringens infections on cecal microbial composition and the possible correlation with body weight gain in broiler chickens
Mingmin Lu, Robert W. Li, Hongyan Zhao, Xianghe Yan, Hyun S. Lillehoj, Zhifeng Sun, SungTak Oh, Yueying Wang, Charles Li
Research in Veterinary Science.2020; 132: 142. CrossRef
Family matters: skin microbiome reflects the social group and spatial proximity in wild zebra finches
Kathrin Engel, Helga Pankoke, Sebastian Jünemann, Hanja B. Brandl, Jan Sauer, Simon C. Griffith, Jörn Kalinowski, Barbara A. Caspers
BMC Ecology.2020;[Epub] CrossRef
Dissection of the cecal microbial community in chickens after Eimeria tenella infection
Hong-Liang Chen, Xin-Yu Zhao, Guang-Xun Zhao, Hai-Bin Huang, Hao-Rui Li, Chun-Wei Shi, Wen-Tao Yang, Yan-Long Jiang, Jian-Zhong Wang, Li-Ping Ye, Quan Zhao, Chun-Feng Wang, Gui-Lian Yang
Parasites & Vectors.2020;[Epub] CrossRef
Dietary supplementation with fermented defatted “alperujo” induces modifications of the intestinal mucosa and cecal microbiota of broiler chickens
Agustín Rebollada-Merino, María Ugarte-Ruiz, Marta Hernández, Pedro Miguela-Villoldo, David Abad, Pedro Cuesta-Álvaro, David Rodríguez-Lázaro, Lucía de Juan, Lucas Domínguez, Antonio Rodríguez-Bertos
Poultry Science.2020; 99(11): 5308. CrossRef
Changes in the gut microbiota mediate the differential regulatory effects of two glucose oxidases produced by Aspergillus niger and Penicillium amagasakiense on the meat quality and growth performance of broilers
Shengru Wu, Xiaodong Chen, Taohuan Li, Hao Ren, Lixin Zheng, Xiaojun Yang
Journal of Animal Science and Biotechnology.2020;[Epub] CrossRef
Sanguinarine modulate gut microbiome and intestinal morphology to enhance growth performance in broilers
Zhu-Ying Liu, Xiao-Long Wang, Shu-Qi Ou, De-Xing Hou, Jian-Hua He, Michael H. Kogut
PLOS ONE.2020; 15(6): e0234920. CrossRef
Characterization of heat stress affecting the growth performance, blood biochemical profile, and redox status in male and female broilers at market age
Shaojun He, Qirun Yin, Yongjie Xiong, Jing Li, Deyi Liu
Tropical Animal Health and Production.2020; 52(6): 3833. CrossRef
Influential factors on the composition of the conventionally raised broiler gastrointestinal microbiomes
K.M. Feye, M.F.A. Baxter, G. Tellez-Isaias, M.H. Kogut, S.C. Ricke
Poultry Science.2020; 99(2): 653. CrossRef
Genome reconstruction of a novel carbohydrate digesting bacterium from the chicken caecal microflora
Ankit T. Hinsu, Ramesh J. Pandit, Shriram H. Patel, Androniki Psifidi, Fiona M. Tomley, Subrata K. Das, Damer P. Blake, Chaitanya G. Joshi
Meta Gene.2019; 20: 100543. CrossRef
Functioning of the Intestinal Ecosystem: From New Technologies in Microbial Research to Practical Poultry Feeding – A Review
Zenon Zduńczyk
Annals of Animal Science.2019; 19(2): 239. CrossRef
Faecalibacterium diversity in dairy cow milk
Keith W. Savin, Jody Zawadzki, Martin J. Auldist, Jianghui Wang, Doris Ram, Simone Rochfort, Benjamin G. Cocks, Christopher Staley
PLOS ONE.2019; 14(8): e0221055. CrossRef
Olfactory Communication via Microbiota: What Is Known in Birds?
Öncü Maraci, Kathrin Engel, Barbara A. Caspers
Genes.2018; 9(8): 387. CrossRef

Soil pH and electrical conductivity are key edaphic factors shaping bacterial communities of greenhouse soils in Korea: Jeong Myeong Kim , An-Sung Roh , Seung-Chul Choi , Eun-Jeong Kim , Moon-Tae Choi , Byung-Koo Ahn , Sun-Kuk Kim , Young-Han Lee , Jae-Ho Joa , Seong-Soo Kang , Shin Ae Lee , Jae-Hyung Ahn , Jaekyeong Song , Hang-Yeon Weon; J. Microbiol. 2016;54(12):838-845. Published online November 26, 2016; DOI: https://doi.org/10.1007/s12275-016-6526-5

46 View
0 Download
122 Crossref

Abstract

Soil microorganisms play an essential role in soil ecosystem processes such as organic matter decomposition, nutrient cycling, and plant nutrient availability. The land use for greenhouse cultivation has been increasing continuously, which involves an intensive input of agricultural materials to enhance productivity; however, relatively little is known about bacterial communities in greenhouse soils. To assess the effects of environmental factors on the soil bacterial diversity and community composition, a total of 187 greenhouse soil samples collected across Korea were subjected to bacterial 16S rRNA gene pyrosequencing analysis. A total of 11,865 operational taxonomic units at a 97% similarity cutoff level were detected from 847,560 sequences. Among nine soil factors evaluated; pH, electrical conductivity (EC), exchangeable cations (Ca2+, Mg2+, Na+, and K+), available P2O5, organic matter, and NO3-N, soil pH was most strongly correlated with bacterial richness (polynomial regression, pH: R2 = 0.1683, P < 0.001) and diversity (pH: R2 = 0.1765, P < 0.001). Community dissimilarities (Bray-Curtis distance) were positively correlated with Euclidean distance for pH and EC (Mantel test, pH: r = 0.2672, P < 0.001; EC: r = 0.1473, P < 0.001). Among dominant phyla (> 1%), the relative abundances of Proteobacteria, Gemmatimonadetes, Acidobacteria, Bacteroidetes, Chloroflexi, and Planctomycetes were also more strongly correlated with pH and EC values, compared with other soil cation contents, such as Ca2+, Mg2+, Na+, and K+. Our results suggest that, despite the heterogeneity of various environmental variables, the bacterial communities of the intensively cultivated greenhouse soils were particularly influenced by soil pH and EC. These findings therefore shed light on the soil microbial ecology of greenhouse cultivation, which should be helpful for devising effective management strategies to enhance soil microbial diversity and improving crop productivity.

Citations

Citations to this article as recorded by

Regulating facility soil microbial community and reducing cadmium enrichment in lettuce by reductive soil disinfestation
Kaining Sun, Shu Zhang, Junfeng Wang
Frontiers in Environmental Science.2024;[Epub] CrossRef
Growth Disturbance, Mineral Nutrient Imbalance, Specific Symptoms and Leaf Characteristics Changes in Two Pomegranate Cultivars Induced by Deficiencies and Excess of Ca, Mg, Zn and Fe
Azhar Ouni, Samia Abboud, Darine Tlili, Sahar Ben Abdelwaheb, Mourad Jellali, Wafaa Bousetta, Messaoud Mars, Soumaya Dbara
Journal of Soil Science and Plant Nutrition.2024; 24(4): 8291. CrossRef
Intermediate irrigation with low fertilization promotes soil nutrient cycling and reduces CO2 and CH4 emissions via regulating fungal communities in arid agroecosystems
Wancai Wang, Zhencheng Ye, Jing Li, Guobin Liu, Qixiao Wu, Zhaoyang Wang, Guoqin He, Wende Yan, Chao Zhang
Journal of Environmental Management.2024; 351: 119688. CrossRef
Alpine wetlands degradation leads to soil nutrient imbalances that affect plant growth and microbial diversity
Ganjun Xu, Xiaoming Kang, Fei Wang, Weirong Zhuang, Wende Yan, Kerou Zhang
Communications Earth & Environment.2024;[Epub] CrossRef
Continuous cropping obstacles of medicinal plants: Focus on the plant-soil-microbe interaction system in the rhizosphere
Jiameng Liao, Pengguo Xia
Scientia Horticulturae.2024; 328: 112927. CrossRef
Agricultural ecosystems rather than fertilization strategies drives structure and composition of the ureolytic microbial functional guilds
Na Lv, Ping Gong, Hao Sun, Xiangxin Sun, Zhiguang Liu, Xueshi Xie, Yan Xue, Yuchao Song, Kaikuo Wu, Tingting Wang, Zhijie Wu, Lili Zhang
Journal of Environmental Management.2024; 372: 123148. CrossRef
Effects of reductive soil disinfestation combined with different types of organic materials on the microbial community and functions
Yu Zhan, Yi Zhou, Ergang Wang, Xinyue Miao, Tingting Zhou, Ning Yan, Changbao Chen, Qiong Li, Wenli Chen
Microbiology Spectrum.2024;[Epub] CrossRef
Monitoring of indicators and bacterial succession in organic-amended technosols for the restoration of semiarid ecosystems
Rocío Soria, Raúl Ortega, Nicolás Valiente, Natalia Rodríguez-Berbel, Manuel Esteban Lucas-Borja, Isabel Miralles
Science of The Total Environment.2024; 954: 176302. CrossRef
Contrasting responses of α- and β-multifunctionality to aboveground plant community in the Qinghai-Tibet Plateau
Xia Zhao, Hanwen Cui, Hongxian Song, Jingwei Chen, Jiajia Wang, Ziyang Liu, Izhar Ali, Zi Yang, Xiao Hou, Xianhui Zhou, Sa Xiao, Shuyan Chen
Science of The Total Environment.2024; 917: 170464. CrossRef
Vermicompost Supply Enhances Fragrant-Rice Yield by Improving Soil Fertility and Eukaryotic Microbial Community Composition under Environmental Stress Conditions
Anas Iqbal, Quaid Hussain, Zhaowen Mo, Tian Hua, Abd El-Zaher M. A. Mustafa, Xiangru Tang
Microorganisms.2024; 12(6): 1252. CrossRef
Substation of vermicompost mitigates Cd toxicity, improves rice yields and restores bacterial community in a Cd-contaminated soil in Southern China
Anas Iqbal, Jiang Ligeng, Zhaowen Mo, Muhammad Adnan, Rattan Lal, Maid Zaman, Sayed Usman, Tian Hua, Muhammad Imran, Sheng-Gang Pan, Jian-Ying Qi, Meiyang Duan, Qichang Gu, Xiangru Tang
Journal of Hazardous Materials.2024; 465: 133118. CrossRef
Assembly of root-associated bacterial community and soil health in cadmium-contaminated soil affected by nano/bulk-biochar compost associations
Qizhen Liu, Zhiqin Chen, Dan He, Ancao Pan, Jie yuan, Yaru Liu, Lukuan Huang, Ying Feng
Environmental Pollution.2024; 360: 124619. CrossRef
Unravelling the influence of microplastics with/without additives on radish (Raphanus sativus) and microbiota in two agricultural soils differing in pH
Jun Meng, Chengmei Diao, Zhonghua Cui, Zhangtao Li, Jiayi Zhao, Haibo Zhang, Minjun Hu, Jun Xu, Yugen Jiang, Ghulam Haider, Dong Yang, Shengdao Shan, Huaihai Chen
Journal of Hazardous Materials.2024; 478: 135535. CrossRef
Unveiling soil bacterial ecosystems in andean citrus orchards of Santander, Colombia
Genis Andrés Castillo-Villamizar, Valentina Tapia-Perdomo, Julieth Maldonado-Pava, Pedro Santamaría-Gálvis, Lizbeth Sayavedra, Jorge Hernandez-Torres, Edinson Puentes-Cala
Frontiers in Ecology and Evolution.2024;[Epub] CrossRef
Analysis of microbial communities in wheat, alfalfa, and oat crops after Tilletia laevis Kühn infection
Yuyang Shen, Chen Delai, Taiguo Liu, Wanquan Chen, Guangkuo Li, Haifeng Gao, Li Gao
Frontiers in Microbiology.2024;[Epub] CrossRef
Uptake and translocation of fungicide picarbutrazox in greenhouse cabbage: the significance of translocation factors and home processing
Ye-Jin Heo, Se-Yeon Kwak, Aniruddha Sarker, Sang-Hyeob Lee, Jae-Won Choi, Ji-Eun Oh, Lawal Abdulkareem, Jang-Eok Kim
Environmental Science and Pollution Research.2023; 30(14): 40919. CrossRef
Limitations of biofertilizers and their revitalization through nanotechnology
Pradeep Kumar Rai, Anuradha Rai, Naveen Kumar Sharma, Tarunendu Singh, Yogendra Kumar
Journal of Cleaner Production.2023; 418: 138194. CrossRef
New interactive functional indicator approach for river health assessment in an Asian temperate river: Comprehensive analysis of water chemistry, physical habitat, land use, and the biological disturbance of invasive alien species
Namsrai Jargal, Jeong-Eun Kim, Kwang-Guk An
Ecological Indicators.2023; 157: 111212. CrossRef
Response of the Soil Fungal Community and Its Function during the Conversion of Forestland to Tea Plantations: A Case Study in Southeast China
Feng Wang, Yuzhen Chen, Xiaomin Yu, Wenquan Yu, Zhiming You, Zhenbiao Yang
Forests.2023; 14(2): 209. CrossRef
Differences in bacterial community composition, structure and function between sediments in waterways and non-navigable channels in a plain river network area
Yixin Ma, Zulin Hua, Peng Wang, Liang Yu, Ying Lu, Yifan Wang, Yueyang Dong
Environmental Science and Pollution Research.2023; 30(16): 45910. CrossRef
Depth-Dependent Distribution of Prokaryotes in Sediments of the Manganese Crust on Nazimov Guyots of the Magellan Seamounts
Jianxing Sun, Hongbo Zhou, Haina Cheng, Zhu Chen, Jichao Yang, Yuguang Wang, Chunlei Jing
Microbial Ecology.2023; 86(4): 3027. CrossRef
Predicting microbial responses to changes in soil physical and chemical properties under different land management
Sara Sadeghi, Billi Jean Petermann, Joshua J. Steffan, Eric C. Brevik, Csongor Gedeon
Applied Soil Ecology.2023; 188: 104878. CrossRef
Bacterial and archaeal communities in saline soils from a Los Negritos geothermal area in Mexico
Joseph GUEVARA-LUNA, Mario HERNÁNDEZ-GUZMÁN, Nina MONTOYA-CIRIACO, Luc DENDOOVEN, Marina Olivia FRANCO-HERNÁNDEZ, Paulina ESTRADA-DE LOS SANTOS, María Soledad VÁSQUEZ-MURRIETA
Pedosphere.2023; 33(2): 312. CrossRef
Heavy Metal Distribution and Microbial Diversity of the Surrounding Soil and Tailings of Two Cu Mines in China
Yu Xia, Jing Liu, Jie Chang, Weijia Li, Kaiyu Xia, Zilong Liu, Yizhen Liu, Xuwen He
Water, Air, & Soil Pollution.2023;[Epub] CrossRef
Phosphorus addition modifies the bacterial community structure in rhizosphere of Achnatherum inebrians by influencing the soil properties and modulates the Epichloë gansuensis-mediated root exudate profiles
Chao Wang, Jianfeng Wang, Xueli Niu, Yang Yang, Kamran Malik, Jie Jin, Chengzhou Zhao, Rong Tang, Rong Zheng, Rong Huang
Plant and Soil.2023; 491(1-2): 543. CrossRef
Effects of 13C isotope-labeled allelochemicals on the growth of the invasive plant Alternanthera philoxeroides
Zexun Hua, Qingsong Xie, Yue Li, Mengying He, Yan Wang, Hongmiao Wu, Zhen Zhang
Scientific Reports.2023;[Epub] CrossRef
Development of rapid and precise approach for quantification of bacterial taxa correlated with soil health
Taghreed Khaled Abdelmoneim, Mahmoud S. M. Mohamed, Ismail Abdelshafy Abdelhamid, Sara Fareed Mohamed Wahdan, Mohamed A. M. Atia
Frontiers in Microbiology.2023;[Epub] CrossRef
Plant ash prevents acid mine drainage from sulfur-bearing tailings through multiple actions — A low-cost alkaline material
Jun Zeng, Jinrong Qiu, Jun Zhang, Yuqi Qi, Rentao Liu, Chuanqi Jian, Na Liu, Yaoming Su
Applied Geochemistry.2023; 155: 105702. CrossRef
Natural restoration alters soil microbial community structure, but has contrasting effects on the diversity of bacterial and fungal assemblages in salinized grasslands
Weina Wang, Huanjun Liu, Lifei Chen, Kadri Koorem, Yingchao Hu, Liang-Jun Hu
Science of The Total Environment.2023; 891: 164726. CrossRef
Spatial controls of methane uptake in upland soils across climatic and geological regions in Greenland
Ludovica D’Imperio, Bing-Bing Li, James M. Tiedje, Youmi Oh, Jesper Riis Christiansen, Sebastian Kepfer-Rojas, Andreas Westergaard-Nielsen, Kristian Koefoed Brandt, Peter E. Holm, Peiyan Wang, Per Ambus, Bo Elberling
Communications Earth & Environment.2023;[Epub] CrossRef
Comparative Analysis of Microbial Community Characteristic of Acidic and Neutral Soils in Korean Orchards
Do-Hyun Kim, Ji Yong Moon, Soo Young Hong, Hyeonmo Ahn, Yeo Wook Yoon, Hyo Jin Kim, So Youn Lee, Ji Won Kim, Eun-heui Han, Sang Yoon Kim, Eunjin Lee, Hang-Yeon Weon, Ho-Jong Ju
Korean Journal of Soil Science and Fertilizer.2023; 56(4): 449. CrossRef
Application of bovine bone meal and oyster shell meal to heavy metals polluted soil: Vegetable safety and bacterial community
Xiongkai Zheng, Bowen Zhang, Weibin Lai, Mengting Wang, Xueqin Tao, Mengyao Zou, Jiangmin Zhou, Guining Lu
Chemosphere.2023; 313: 137501. CrossRef
Soil Bacterial Community Structure and Physicochemical Influencing Factors of Artificial Haloxylon ammodendron Forest in the Sand Blocking and Fixing Belt of Minqin, China
Anlin Wang, Rui Ma, Yanjun Ma, Danni Niu, Teng Liu, Yongsheng Tian, Zhenghu Dong, Qiaodi Chai
Forests.2023; 14(11): 2244. CrossRef
Relationships between Rhizosphere Environments and Growth of 10-Year-Old Wild-Simulated Ginseng
Yeong-Bae Yun, Kiyoon Kim, Jeong-Hoon Huh, Yurry Um
Agronomy.2023; 13(5): 1313. CrossRef
Effect comparisons of different conditioners and microbial agents on the degradation of estrogens during dairy manure composting
Yan Li, Dong Zeng, Xiao-Lu Jiang, De-Chun He, Jia-Wu Hu, Zi-Wei Liang, Jia-Cheng Wang, Wang-Rong Liu
Chemosphere.2023; 345: 140312. CrossRef
Effects of continuous cropping Jiashi muskmelon on rhizosphere microbial community
Jilian Wang, Mingyuan Li, Qian Zhou, Tian Zhang
Frontiers in Microbiology.2023;[Epub] CrossRef
Does biochar addition improve soil physicochemical properties, bacterial community and alfalfa growth for saline soils?
Yang Chen, Yuan Qiu, Xinmei Hao, Ling Tong, Sien Li, Shaozhong Kang
Land Degradation & Development.2023; 34(11): 3314. CrossRef
The Response of Soil Bacterial Communities to Cropping Systems in Saline–Alkaline Soil in the Songnen Plain
Xiaoqian Liu, Junnan Ding, Jingyang Li, Dan Zhu, Bin Li, Bohan Yan, Lina Mao, Guangyu Sun, Lei Sun, Xin Li
Agronomy.2023; 13(12): 2984. CrossRef
Evaluation of a subtropical maize-rice rotation system maintained under long-term fertilizer inputs for sustainable intensification of agriculture
Asif Hameed, Yu-Pei Chen, Fo-Ting Shen, Shih-Yao Lin, Hsin-I Huang, Yu-Wen Lin, Chiu-Chung Young
Applied Soil Ecology.2023; 184: 104772. CrossRef
Metagenomic analysis displays the potential predictive biodegradation pathways of the persistent pesticides in agricultural soil with a long record of pesticide usage
Muneer Ahmad Malla, Anamika Dubey, Ashwani Kumar, Shweta Yadav
Microbiological Research.2022; 261: 127081. CrossRef
Soil microbial community responses to the application of a combined amendment in a historical zinc smelting area
Chuanjiang Tan, Youfa Luo, Tianling Fu
Environmental Science and Pollution Research.2022; 29(9): 13056. CrossRef
Elevated CO2 affects the rhizosphere microbial community and the growth of two invader plant species differently in semiarid Mediterranean soils
Fuensanta Caravaca, Pilar Torres, Gisela Díaz, Antonio Roldán
Land Degradation & Development.2022; 33(1): 117. CrossRef
Selective Enrichment Method for Isolation of Efficient Phosphate Solubilizing Bacteria from Soil
Patel HK, Vyas RV, Shelat HN
Communications in Soil Science and Plant Analysis.2022; 53(12): 1532. CrossRef
Impact of hexachlorocyclohexane addition on the composition and potential functions of the bacterial community in red and purple paddy soil
Jian Wang, Kaidi Tang, Xiaojie Hu, Hefei Wang, Fredrick Owino Gudda, Emmanuel Stephen Odinga, Hassan El-Ramady, Wanting Ling
Environmental Pollution.2022; 297: 118795. CrossRef
Remediation of Cd-, Pb-, Cu-, and Zn-contaminated soil using cow bone meal and oyster shell meal
Xiongkai Zheng, Mengyao Zou, Bowen Zhang, Weibin Lai, Xianming Zeng, Siyuan Chen, Mengting Wang, Xiaoyun Yi, Xueqin Tao, Guining Lu
Ecotoxicology and Environmental Safety.2022; 229: 113073. CrossRef
The spatio-chronological distribution of Achnatherum splendens influences soil bacterial communities in degraded grasslands
Chao Yang, Kangjia Li, Jipeng Sun, Weiyi Ye, Hao Lin, Yuze Yang, Yiran Zhao, Guofeng Yang, Zengyu Wang, Guihe Liu, Guomin Yu, Juan Sun
CATENA.2022; 209: 105828. CrossRef
Metagenomic analysis of bacterial communities of Wadi Namar Lake, Riyadh, Saudi Arabia
Modhi O. Alotaibi, Afrah E. Mohammed, Kamal H. Eltom
Saudi Journal of Biological Sciences.2022; 29(5): 3749. CrossRef
In situ restoration of soil ecological function in a coal gangue reclamation area after 10 years of elm/poplar phytoremediation
Dong-sheng Bai, Xu Yang, Jin-long Lai, Yi-wang Wang, Yu Zhang, Xue-gang Luo
Journal of Environmental Management.2022; 305: 114400. CrossRef
Antibiotic resistance genes alternation in soils modified with neutral and alkaline salts: interplay of salinity stress and response strategies of microbes
Yi Xu, Guoxiang You, Mairan Zhang, Dengyun Peng, Zewei Jiang, Suting Qi, Shihong Yang, Jun Hou
Science of The Total Environment.2022; 809: 152246. CrossRef
Hiệu quả của phân hữu cơ phối trộn tươi từ bèo hoa dâu (Azolla carolinian) và các vật liệu hữu cơ khác lên sinh trưởng và năng suất lúa trên nền đất nhiễm mặn ở điều kiện nhà lưới
Cao Thơ Nguyễn, Võ Hải Đường Trần, Khởi Nghĩa Nguyễn
Can Tho University Journal of Science.2022; 58(4): 143. CrossRef
Distribution of Burkholderia pseudomallei within a 300-cm deep soil profile: implications for environmental sampling
Khemngeun Pongmala, Alain Pierret, Priscia Oliva, Anne Pando, Viengmon Davong, Sayaphet Rattanavong, Norbert Silvera, Manophab Luangraj, Laurie Boithias, Khampaseuth Xayyathip, Ludovic Menjot, Melina Macouin, Emma Rochelle-Newall, Henri Robain, Amphone Vo
Scientific Reports.2022;[Epub] CrossRef
Influence of Rosaceous Species and Driving Factors on Differentiation of Rhizospheric Bacteria in a Deciduous Broad-Leaved Forest
Yukun Wang, Yuran He, Mao Ding, Zhi Wang, Shoubiao Zhou
Current Microbiology.2022;[Epub] CrossRef
The Deterioration of Agronomical Traits of the Continuous Cropping of Stevia Is Associated With the Dynamics of Soil Bacterial Community
Xinjuan Xu, Qingyun Luo, Qichao Wei, Shangtao Jiang, Caixia Dong, Mohammad Omar Faruque, Zhongwen Huang, Zhenghua Xu, Changxi Yin, Zaibiao Zhu, Xuebo Hu
Frontiers in Microbiology.2022;[Epub] CrossRef
Cu and Zn exert a greater influence on antibiotic resistance and its transfer than doxycycline in agricultural soils
Na Li, Jianguo Chen, Chong Liu, Jiaxun Yang, Changxiong Zhu, Hongna Li
Journal of Hazardous Materials.2022; 423: 127042. CrossRef
Assessment of Fertilizer Quality in Horse Waste-Based Bokashi Fertilizer Formulations
Auwalu Garba Gashua, Zulkefly Sulaiman, Martini Mohammad Yusoff, Mohd Yusoff Abd Samad, Mohd Fauzi Ramlan, Monsuru Adekunle Salisu
Agronomy.2022; 12(4): 937. CrossRef
Effects of earthworms and arbuscular mycorrhizal fungi on improvement of fertility and microbial communities of soils heavily polluted by cadmium
Gen Wang, Li Wang, Fang Ma
Chemosphere.2022; 286: 131567. CrossRef
Bacterial Community with Plant Growth-Promoting Potential Associated to Pioneer Plants from an Active Mexican Volcanic Complex
Clara Ivette Rincón-Molina, Esperanza Martínez-Romero, José Luis Aguirre-Noyola, Luis Alberto Manzano-Gómez, Adalberto Zenteno-Rojas, Marco Antonio Rogel, Francisco Alexander Rincón-Molina, Víctor Manuel Ruíz-Valdiviezo, Reiner Rincón-Rosales
Microorganisms.2022; 10(8): 1568. CrossRef
Influences of land reclamation on soil bacterial communities of abandoned salt pans in the Yellow River Delta
Yihao Zhu, Xiliang Song, Xiaoli Liu, Weifeng Chen, Xuchang Niu, Weizhi Zhou
Land Degradation & Development.2022; 33(16): 3231. CrossRef
Physico-Chemical and microbiological analysis of the loopspruit river, north west province: A metagenomic approach
Lohan Bredenhann, Daniel La Grange, Carlos Bezuidenhout, Lesego Molale-Tom
Water Supply.2022;[Epub] CrossRef
Long-Term Effect of Alkali and Partially Neutralized Irrigation Water on Soil Quality
Awtar Singh, Arvind Kumar, Rajender Kumar Yadav, Paramjit Singh Minhas, Upasana Saini
Journal of Soil Science and Plant Nutrition.2022; 22(2): 1252. CrossRef
Impacts of disinfected wastewater irrigation on soil characteristics, microbial community composition, and crop yield
Lays Paulino Leonel, Ariane Bize, Mahendra Mariadassou, Cédric Midoux, Jerusa Schneider, Adriano Luiz Tonetti
Blue-Green Systems.2022; 4(2): 247. CrossRef
Reduced Chemical Fertilizer Combined With Bio-Organic Fertilizer Affects the Soil Microbial Community and Yield and Quality of Lettuce
Ning Jin, Li Jin, Shuya Wang, Jinwu Li, Fanhong Liu, Zeci Liu, Shilie Luo, Yue Wu, Jian Lyu, Jihua Yu
Frontiers in Microbiology.2022;[Epub] CrossRef
Optimization of carriers and packaging for effective biofertilizers to enhance Oryza sativa L. growth in paddy soil
Jakkapan Sakpirom, Tomorn Nunkaew, Eakalak Khan, Duangporn Kantachote
Rhizosphere.2021; 19: 100383. CrossRef
Improved immobilization of soil cadmium by regulating soil characteristics and microbial community through reductive soil disinfestation
Xin Li, Xuefeng Li, Yueyue Li, Xiongze Dai, Qingzhuang Zhang, Mi Zhang, Zhuqing Zhang, Yu Tao, Wenchao Chen, Mingxing Zhang, Xiangyu Zhou, Sha Yang, Yanqing Ma, Mostafa Zhran, Xuexiao Zou
Science of The Total Environment.2021; 778: 146222. CrossRef
Soil bacterial community functions and distribution after mining disturbance
Enzong Xiao, Zengping Ning, Tangfu Xiao, Weimin Sun, Shiming Jiang
Soil Biology and Biochemistry.2021; 157: 108232. CrossRef
Pilot Study of Eco-Physiological Pepper Responses to Starfish-Based Organic Soil Amendments in Open-Field and Greenhouse Cultivations
Hyun-Sug Choi
Horticulturae.2021; 7(10): 344. CrossRef
Effects of the Denitrification Inhibitor “Procyanidins” on the Diversity, Interactions, and Potential Functions of Rhizosphere-Associated Microbiome
Mylène Hugoni, William Galland, Solène Lecomte, Maxime Bruto, Mohamed Barakat, Florence Piola, Wafa Achouak, Feth el Zahar Haichar
Microorganisms.2021; 9(7): 1406. CrossRef
Prospective usage of magnesium potassium phosphate cement combined with Bougainvillea alba derived biochar to reduce Pb bioavailability in soil and its uptake by Spinacia oleracea L
Iqbal Naeem, Nasir Masood, Veysel Turan, Muhammad Iqbal
Ecotoxicology and Environmental Safety.2021; 208: 111723. CrossRef
Impacto ambiental del vertimiento de aguas servidas en aglomerados urbanos ilegales del municipio de Villavicencio, Colombia
Fabián Dario Cuadros Segura, Alvaro Javier Moyano Salcedo, Adrian Mateo Pabon Laverde, Jassbleydi Valentina Trujillo Arias
Tecnura.2021; 25(68): 43. CrossRef
Efficacy of chitosan-coated textile waste biochar applied to Cd-polluted soil for reducing Cd mobility in soil and its distribution in moringa (Moringa oleifera L.)
Muhammad Zubair, Pia Muhammad Adnan Ramzani, Bilal Rasool, Muhammad Asaf Khan, Mahmood ur-Rahman, Imran Akhtar, Veysel Turan, Haﬁz Muhammad Tauqeer, Muniba Farhad, Shahbaz Ali Khan, Javed Iqbal, Muhammad Iqbal
Journal of Environmental Management.2021; 284: 112047. CrossRef
The effects of vermicompost and shell powder addition on Cd bioavailability, enzyme activity and bacterial community in Cd-contaminated soil: A field study
Feng Wang, Weiwen Zhang, Lijuan Miao, Tianwei Ji, Yifan Wang, Hangjun Zhang, Ying Ding, Weiqin Zhu
Ecotoxicology and Environmental Safety.2021; 215: 112163. CrossRef
Diversity, structure, and composition of plant growth-promoting bacteria in soil from Brazilian Cerrado
Jailson do Nascimento Silva, Lucas William Mendes, Jadson Emanuel Lopes Antunes, Vania Maria Maciel Melo, Francisca Andrea da Silva Oliveira, Angela Celis de Almeida Lopes, Veronica Brito da Silva, Arthur Prudêncio de Araujo Pereira, Sergio Emilio Santos
Rhizosphere.2021; 20: 100435. CrossRef
Bioaccumulation of heavy metals in Stachys inflata and Scariola orientalis affected by particulate matters of a cement factory in central Iran
Hossein Moradi, Mohammad Abbasi, Mohsen Soleimani
Environmental Science and Pollution Research.2021; 28(32): 44098. CrossRef
Changes in rhizosphere microbial diversity and composition due to NaCl addition to the soil modify the outcome of maize-weed interactions
Larissa Cassemiro Pacheco Monteiro, Christiano da Conceição de Matos, Amarilson de Oliveira Cândido, Tiago Antônio de Oliveira Mendes, Mateus Ferreira Santana, Maurício Dutra Costa
Applied Soil Ecology.2021; 159: 103818. CrossRef
Different Responses of Soil Environmental Factors, Soil Bacterial Community, and Root Performance to Reductive Soil Disinfestation and Soil Fumigant Chloropicrin
Yu Zhan, Ning Yan, Xinyue Miao, Qiong Li, Changbao Chen
Frontiers in Microbiology.2021;[Epub] CrossRef
Farmer Friendly Options for Sterilizing Farm Tools for the Control of Xanthomonas Wilt Disease of Banana
Walter Ocimati, Anthony Fredrick Tazuba, Guy Blomme
Frontiers in Agronomy.2021;[Epub] CrossRef
Green Fluorescent Protein-Tagged Bacillus axarquiensis TUBP1 Reduced Cotton Verticillium Wilt Incidence by Altering Soil Rhizosphere Microbial Communities
Chang Gao, Bo Wang, Guo-cai Ma, Hong Zeng
Current Microbiology.2021; 78(9): 3562. CrossRef
Effect of Bacillus mesonae H20-5 Treatment on Rhizospheric Bacterial Community of Tomato Plants under Salinity Stress
Shin Ae Lee, Hyeon Su Kim, Mee Kyung Sang, Jaekyeong Song, Hang-Yeon Weon
The Plant Pathology Journal.2021; 37(6): 662. CrossRef
Study on the Rhizosphere Soil Microbial Community Structure Associated with Five Land Use Types in Jinchuan Mining Area
Tian-Peng Gao, Jing-Wen Fu, Ming-Bo Zuo, Yu-Bing Liu, Dang-Hui Xu, Guo-Hua Chang, Xi-Sheng Tai, Bing Yue, Zhuo-Xin Yin, Qing Zhang, R. Weerasinghe, C. Fang
E3S Web of Conferences.2021; 237: 01010. CrossRef
Chemical fertilizer reduction with organic fertilizer effectively improve soil fertility and microbial community from newly cultivated land in the Loess Plateau of China
Jianqiao Han, Yunyun Dong, Man Zhang
Applied Soil Ecology.2021; 165: 103966. CrossRef
Rhizosphere Microbiome Regulates the Growth of Mustard under Organic Greenhouse Cultivation
Ting-Chung Liu, Hui-Mei Peng, Seth Wollney, Chang-Hui Shen
Agriculture.2021; 11(10): 987. CrossRef
Culture-dependent and culture-independent characterization of bacterial community diversity in different types of sandy lands: the case of Minqin County, China
Yali Wei, Fang Wang, Jiangli Gao, Yaolong Huang, Wei Ren, Hongmei Sheng
BMC Microbiology.2021;[Epub] CrossRef
Application of wood ash leads to strong vertical gradients in soil pH changing prokaryotic community structure in forest top soil
Toke Bang-Andreasen, Mette Peltre, Lea Ellegaard-Jensen, Lars Hestbjerg Hansen, Morten Ingerslev, Regin Rønn, Carsten Suhr Jacobsen, Rasmus Kjøller
Scientific Reports.2021;[Epub] CrossRef
Effects of an additive (hydroxyapatite–bentonite–biochar) on Cd and Pb stabilization and microbial community composition in contaminated vegetable soil
Di Zhang, Ting Li, Aifang Ding, Xiaoxia Wu
RSC Advances.2021; 11(20): 12200. CrossRef
The effect of Soil properties on the Biological Diversity of Fungi in Soil University of Anbar.
Wijdan Ahmed Ali, Rahaf Haineed Hussein, Wafaa Tali Radef
Journal of Physics: Conference Series.2021; 2114(1): 012068. CrossRef
Effects of continuous cropping of Pinellia ternata (Thunb.) Breit. on soil physicochemical properties, enzyme activities, microbial communities and functional genes
Yuan Zhao, Xiao–Meng Qin, Xue–Ping Tian, Tao Yang, Rong Deng, Jun Huang
Chemical and Biological Technologies in Agriculture.2021;[Epub] CrossRef
Effects of microbial bio-fertilizers on soil physicochemical properties under different soil water regimes in greenhouse grown eggplant (Solanum Melongena L.)
Zeynep Demir
Communications in Soil Science and Plant Analysis.2020; 51(14): 1888. CrossRef
Rare rather than abundant microbial communities drive the effects of long-term greenhouse cultivation on ecosystem functions in subtropical agricultural soils
Mengdi Xue, Zhiying Guo, Xinyun Gu, Hailun Gao, Shimei Weng, Jing Zhou, Daguo Gu, Huixiang Lu, Xiaoqi Zhou
Science of The Total Environment.2020; 706: 136004. CrossRef
Electrophysical and geoinformational methods of mapping the biological properties of peats
Antonina D. Pozdnyakova, Lev A. Pozdnyakov
Dokuchaev Soil Bulletin.2020; (103): 149. CrossRef
Chitosan with Bentonite and Biochar in Ni-Affected Soil Reduces Grain Ni Concentrations, Improves Soil Enzymes and Grain Quality in Lentil
Hafiz Syed Tanzeem-ul-Haq, Bilal Rasool, Syed Ehtisham-ul-Haque, Sadia Saif, Sadia Zafar, Tahira Younis, Imran Akhtar, Laila Jafri, Naeem Iqbal, Nasir Masood, Karolina Lewińska, Muhammad Iqbal
Minerals.2020; 11(1): 11. CrossRef
Structural and functional responses of bacterial and fungal communities to multiple heavy metal exposure in arid loess
Xiao-Ying Zeng, Shi-Weng Li, Yan Leng, Xiao-Hu Kang
Science of The Total Environment.2020; 723: 138081. CrossRef
Role of biochar and organic substrates in enhancing the functional characteristics and microbial community in a saline soil
M.R.K. Manasa, Naveen Reddy Katukuri, Sree Sankar Darveekaran Nair, Yang Haojie, Zhiman Yang, Rong bo Guo
Journal of Environmental Management.2020; 269: 110737. CrossRef
Differences of the microbial community structures and predicted metabolic potentials in the lake, river, and wetland sediments in Dongping Lake Basin
Jiaohui Fang, Ruirui Yang, Qingqing Cao, Junyu Dong, Changchao Li, Quan Quan, Miansong Huang, Jian Liu
Environmental Science and Pollution Research.2020; 27(16): 19661. CrossRef
Utilization of marigold (Tagetes erecta) flower fermentation wastewater as a fertilizer and its effect on microbial community structure in maize rhizosphere and non-rhizosphere soil
Hongwei Liu, Yana Wang, Cong Liang, Qingxia Yang, Shuai Wang, Buqing Wang, Feiyan Zhang, Liping Zhang, Huicai Cheng, Shuishan Song, Liping Zhang
Biotechnology & Biotechnological Equipment.2020; 34(1): 522. CrossRef
Responses of a semi-natural grassland community of tropical region to elevated ozone: An assessment of soil dynamics and biomass accumulation
Tsetan Dolker, Arideep Mukherjee, Shashi Bhushan Agrawal, Madhoolika Agrawal
Science of The Total Environment.2020; 718: 137141. CrossRef
Analysis of bacterial and fungal communities in continuous-cropping ramie (Boehmeria nivea L. Gaud) fields in different areas in China
Yanzhou Wang, Xiaomin Xu, Touming Liu, Hongwu Wang, Yan Yang, Xiaorong Chen, Siyuan Zhu
Scientific Reports.2020;[Epub] CrossRef
Diversity of rhizosphere and endophytic fungi in Atractylodes macrocephala during continuous cropping
Bo Zhu, Jianjun Wu, Qingyong Ji, Wei Wu, Shihui Dong, Jiayan Yu, Qiaoyan Zhang, Luping Qin
PeerJ.2020; 8: e8905. CrossRef
The invader Carpobrotus edulis promotes a specific rhizosphere microbiome across globally distributed coastal ecosystems
G. Rodríguez-Caballero, F. Caravaca, G. Díaz, P. Torres, A. Roldán
Science of The Total Environment.2020; 719: 137347. CrossRef
Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage
Rania AYDİ BEN ABDALLAH, Hayfa JABNOUN-KHİAREDDİNE, Mejda DAAMİ-REMADİ
International Journal of Agriculture Environment and Food Sciences.2020; 4(3): 319. CrossRef
Different types of agricultural land use drive distinct soil bacterial communities
Shin Ae Lee, Jeong Myeong Kim, Yiseul Kim, Jae-Ho Joa, Seong-Soo Kang, Jae-Hyung Ahn, Mincheol Kim, Jaekyeong Song, Hang-Yeon Weon
Scientific Reports.2020;[Epub] CrossRef
Total RNA sequencing reveals multilevel microbial community changes and functional responses to wood ash application in agricultural and forest soil
Toke Bang-Andreasen, Muhammad Zohaib Anwar, Anders Lanzén, Rasmus Kjøller, Regin Rønn, Flemming Ekelund, Carsten Suhr Jacobsen
FEMS Microbiology Ecology.2020;[Epub] CrossRef
Changes in soil microbial communities at Jinsha earthen site are associated with earthen site deterioration
Jing Li, Xiaoyue Zhang, Lin Xiao, Ke Liu, Yue Li, Ziwei Zhang, Qiang Chen, Xiaolin Ao, Decong Liao, Yunfu Gu, Menggen Ma, Xiumei Yu, Quanju Xiang, Ji Chen, Xiaoping Zhang, Tao Yang, Petri Penttinen, Ke Zhao
BMC Microbiology.2020;[Epub] CrossRef
Microbial Diversity of Some Sabkha and Desert Sites in Saudi Arabia
Modhi O. Alotaibi, Hana S. Sonbol, Suaad S. Alwakeel, Rasha S. Suliman, Ramy A. Fodah, Ahmad S. Abu Jaffal, Nouf I. AlOthman, Afrah E. Mohammed
Saudi Journal of Biological Sciences.2020; 27(10): 2778. CrossRef
Responses of the rhizosphere bacterial community in acidic crop soil to pH: Changes in diversity, composition, interaction, and function
Wenjie Wan, Jiadan Tan, Yi Wang, Yin Qin, Huangmei He, Huiqin Wu, Wenlong Zuo, Donglan He
Science of The Total Environment.2020; 700: 134418. CrossRef
Decrease in diversity and shift in composition of the soil bacterial community were closely related to high available phosphorus in agricultural Fluvisols of North China
Chenxu Liu, Xiaorong Zhao, Qimei Lin, Guitong Li
Acta Agriculturae Scandinavica, Section B — Soil & Plant Science.2019; 69(7): 618. CrossRef
Soil aggregates regulate the impact of soil bacterial and fungal communities on soil respiration
Chao Yang, Nan Liu, Yingjun Zhang
Geoderma.2019; 337: 444. CrossRef
Bacterial community variations in paddy soils induced by application of veterinary antibiotics in plant-soil systems
Misbah Uddin, Jingwen Chen, Xianliang Qiao, Run Tian, Yasir Arafat, Xiaojing Yang
Ecotoxicology and Environmental Safety.2019; 167: 44. CrossRef
Effects of recent fire on soil conditions and nutrient use of a native and an invasive grass in the Brazilian savanna
Erico Fernando Lopes Pereira-Silva, Elisa Hardt, Murilo Bellato Biral, Victor Camargo Keller, Welington Braz Carvalho Delitti
Écoscience.2019; 26(4): 359. CrossRef
Identification of Microbial Profiles in Heavy-Metal-Contaminated Soil from Full-Length 16S rRNA Reads Sequenced by a PacBio System
Moonsuk Hur, Soo-Je Park
Microorganisms.2019; 7(9): 357. CrossRef
Effects of Pretreatment Methods of Wheat Straw on Adsorption of Cd(II) from Waterlogged Paddy Soil
Mengjie Wu, Hongyu Liu, Chunping Yang
International Journal of Environmental Research and Public Health.2019; 16(2): 205. CrossRef
A preliminary examination of bacterial, archaeal, and fungal communities inhabiting different rhizocompartments of tomato plants under real-world environments
Shin Ae Lee, Yiseul Kim, Jeong Myeong Kim, Bora Chu, Jae-Ho Joa, Mee Kyung Sang, Jaekyeong Song, Hang-Yeon Weon
Scientific Reports.2019;[Epub] CrossRef
Soil Salinity and pH Drive Soil Bacterial Community Composition and Diversity Along a Lateritic Slope in the Avon River Critical Zone Observatory, Western Australia
Flora J. M. O’Brien, Maya Almaraz, Melissa A. Foster, Alice F. Hill, David P. Huber, Elizabeth K. King, Harry Langford, Mary-Anne Lowe, Bede S. Mickan, Valerie S. Miller, Oliver W. Moore, Falko Mathes, Deirdre Gleeson, Matthias Leopold
Frontiers in Microbiology.2019;[Epub] CrossRef
Effect of aridity and dune type on rhizosphere soil bacterial communities of Caragana microphylla in desert regions of northern China
Jiangli Gao, Yang Luo, Yali Wei, Yaolong Huang, Hua Zhang, Wenliang He, Hongmei Sheng, Lizhe An, Marie-Joelle Virolle
PLOS ONE.2019; 14(10): e0224195. CrossRef
Temporal variation of Q 10 values in response to changes in soil physiochemical properties caused by fairy rings
Chao Yang, Yingjun Zhang, Yuping Rong, Yixian Bei, Yuqi Wei, Nan Liu
European Journal of Soil Biology.2018; 86: 42. CrossRef
Soil productivity and structure of bacterial and fungal communities in unfertilized arable soil
Boxi Wang, Yoichi Adachi, Shuichi Sugiyama, Lorenzo Brusetti
PLOS ONE.2018; 13(9): e0204085. CrossRef
Effect of reclamation of abandoned salinized farmland on soil bacterial communities in arid northwest China
Zhibo Cheng, Yun Chen, Fenghua Zhang
Science of The Total Environment.2018; 630: 799. CrossRef
Composition and diversity of cyanobacteria-associated and free-living bacterial communities during cyanobacterial blooms
Leighannah N. Akins, Paul Ayayee, Laura G. Leff
Annals of Microbiology.2018; 68(8): 493. CrossRef
Modeling soil acidification in typical Chinese cropping systems
Qichao Zhu, Xuejun Liu, Tianxiang Hao, Mufan Zeng, Jianbo Shen, Fusuo Zhang, Wim De Vries
Science of The Total Environment.2018; 613-614: 1339. CrossRef
Macro and Microelements Drive Diversity and Composition of Prokaryotic and Fungal Communities in Hypersaline Sediments and Saline–Alkaline Soils
Kaihui Liu, Xiaowei Ding, Xiaofei Tang, Jianjun Wang, Wenjun Li, Qingyun Yan, Zhenghua Liu
Frontiers in Microbiology.2018;[Epub] CrossRef
Shift of soil bacterial community and decrease of metals bioavailability after immobilization of a multi-metal contaminated acidic soil by inorganic-organic mixed amendments: A field study
Li-min Huang, Guang-wei Yu, Fu-zhen Zou, Xin-xian Long, Qi-tang Wu
Applied Soil Ecology.2018; 130: 104. CrossRef
Wood Ash Induced pH Changes Strongly Affect Soil Bacterial Numbers and Community Composition
Toke Bang-Andreasen, Jeppe T. Nielsen, Jana Voriskova, Janine Heise, Regin Rønn, Rasmus Kjøller, Hans C. B. Hansen, Carsten S. Jacobsen
Frontiers in Microbiology.2017;[Epub] CrossRef
Comparisons of Soil Properties, Enzyme Activities and Microbial Communities in Heavy Metal Contaminated Bulk and Rhizosphere Soils of Robinia pseudoacacia L. in the Northern Foot of Qinling Mountain
Yurong Yang, Miao Dong, Yaping Cao, Jinlong Wang, Ming Tang, Yihui Ban
Forests.2017; 8(11): 430. CrossRef

Dynamics of bacterial communities in rice field soils as affected by different long-term fertilization practices: Jae-Hyung Ahn , Shin Ae Lee , Jeong Myeong Kim , Myung-Sook Kim , Jaekyeong Song , Hang-Yeon Weon; J. Microbiol. 2016;54(11):724-731. Published online October 29, 2016; DOI: https://doi.org/10.1007/s12275-016-6463-3

44 View
0 Download
27 Crossref

Abstract

Fertilization and the response of the soil microbial community to the process significantly affect crop yield and the environment. In this study, the seasonal variation in the bacterial communities in rice field soil subjected to different fertilization treatments for more than 50 years was investigated using 16S rRNA sequencing. The simultaneous application of inorganic fertilizers and rice straw compost (CAPK) maintained the species richness of the bacterial communities at levels higher than that in the case of non-fertilization (NF) and application of inorganic fertilizers only (APK) in the initial period of rice growth. The seasonal variation in the bacterial community structure in the NF and APK plots showed cyclic behavior, suggesting that the effect of season was important; however, no such trend was observed in the CAPK plot. In the CAPK plot, the relative abundances of putative copiotrophs such as Bacteroidetes, Firmicutes, and Proteobacteria were higher and those of putative oligotrophs such as Acidobacteria and Plactomycetes were lower than those in the other plots. The relative abundances of organotrophs with respiratory metabolism, such as Actinobacteria, were lower and those of chemoautotrophs that oxidize reduced iron and sulfur compounds were higher in the CAPK plot, suggesting greater carbon storage in this plot. Increased methane emission and nitrogen deficiency, which were inferred from the higher abundances of Methylocystis and Bradyrhizobium in the CAPK plot, may be a negative effect of rice straw application; thus, a solution for these should be considered to increase the use of renewable resources in agricultural lands.

Citations

Citations to this article as recorded by

Ramifications of crop residue loading for soil microbial community composition, activity and nutrient supply
Newton Z. Lupwayi, Benjamin H. Ellert, Eric Bremer, Elwin G. Smith, Renee M. Petri, Jonathan A. D. Neilson, H. Henry Janzen
Soil Use and Management.2023; 39(1): 402. CrossRef
Three decades of organic manure and chemical fertilizers co-application enhanced rice productivity through increasing the diversity and key network module of soil bacterial community
Xiran Zhao, Jun Li, Xin Hu, Baowei Hu, Guixin Chu, Rui Tao
Journal of Soils and Sediments.2023; 23(5): 2175. CrossRef
A 40 % paddy surface soil organic carbon increase after 5-year no-tillage is linked with shifts in soil bacterial composition and functions
Jian-Ying Qi, Xiang-Bin Yao, Jian Lu, Long-Xin He, Jun-Li Cao, Zheng-Rong Kan, Xing Wang, Sheng-Gang Pan, Xiang-Ru Tang
Science of The Total Environment.2023; 859: 160206. CrossRef
Bacterial community of agricultural soils used for potato cultivation in Sverdlovsk region
E. P. Shanina, G. A. Lihodeevskiy
Agricultural Science Euro-North-East.2023; 24(6): 989. CrossRef
Ratio of carbon and nitrogen in fertilizer treatment drives distinct rhizosphere microbial community composition and co-occurrence networks
Ruifen Zhu, Chang Liu, Yuan Dong Xu, Wei He, Jielin Liu, Jishan Chen, Yajun An, Shangli Shi
Frontiers in Microbiology.2022;[Epub] CrossRef
The effect of environmental parameters and fertilization practices on yield and soil microbial diversity in a Kenyan paddy rice field
Markus Gorfer, Luigimaria Borruso, Evi Deltedesco, Emily W. Gichuhi, Daniel M. Menge, Daigo Makihara, Nadine Praeg, Stefano Cesco, Tanja Mimmo, Lutz Merbold, Sonja Leitner
Applied Soil Ecology.2022; 176: 104495. CrossRef
Bacterial Diversity and Potential Functions in Response to Long-Term Nitrogen Fertilizer on the Semiarid Loess Plateau
Aixia Xu, Lingling Li, Junhong Xie, Renzhi Zhang, Zhuzhu Luo, Liqun Cai, Chang Liu, Linlin Wang, Sumera Anwar, Yuji Jiang
Microorganisms.2022; 10(8): 1579. CrossRef
Continental-Scale Paddy Soil Bacterial Community Structure, Function, and Biotic Interaction
Hong-Yi Li, Hang Wang, Xin-Hua Tao, Xian-Zhe Wang, Wei-Zheng Jin, Jack A. Gilbert, Yong-Guan Zhu, Zhi-Jian Zhang, Elizabeth Anne Shank
mSystems.2021;[Epub] CrossRef
Methanogenesis and Methane Oxidation in Paddy Fields under Organic Fertilization
Chungwoo Kim, Denver I. Walitang, Tongmin Sa
Korean Journal of Environmental Agriculture.2021; 40(4): 295. CrossRef
Insights into endophytic bacterial diversity of rice grown across the different agro-ecological regions of West Bengal, India
Pranamita Kunda, Abhishek Mukherjee, Paltu Kumar Dhal
World Journal of Microbiology and Biotechnology.2021;[Epub] CrossRef
Response of root nutrient resorption strategies to rhizosphere soil microbial nutrient utilization along Robinia pseudoacacia plantation chronosequence
Miaoping Xu, Junnan Jian, Jiayi Wang, Zhenjiao Zhang, Gaihe Yang, Xinhui Han, Chengjie Ren
Forest Ecology and Management.2021; 489: 119053. CrossRef
Organic Manure Management Increases Soil Microbial Community Structure and Diversity in the Double-cropping Rice Paddy Field of Southern China
Chao Li, Lihong Shi, Haiming Tang, Kaikai Cheng, Li Wen, Weiyan Li, Xiaoping Xiao, Ke Wang
Communications in Soil Science and Plant Analysis.2021; 52(11): 1224. CrossRef
Soil microbial communities in tilled organic and no-till conventional crop production systems
Newton Z. Lupwayi, Cynthia A. Grant, John T. O’Donovan, Andrea H. Eastman, Greg Semach, Derrick A. Kanashiro, Renee M. Petri
Organic Agriculture.2021; 11(4): 553. CrossRef
Profiles of wheat rhizobacterial communities in response to repeated glyphosate applications, crop rotation, and tillage
Newton Z. Lupwayi, Myriam R. Fernandez, Derrick A. Kanashiro, Renee M. Petri, M. Anne Naeth
Canadian Journal of Soil Science.2021; 101(1): 157. CrossRef
Fifteen-year no tillage of a Mollisol with residue retention indirectly affects topsoil bacterial community by altering soil properties
Meng Li, Peng He, Xiao-Li Guo, Xingyi Zhang, Lu-Jun Li
Soil and Tillage Research.2021; 205: 104804. CrossRef
Impact of Maize–Mushroom Intercropping on the Soil Bacterial Community Composition in Northeast China
Xiaoqin Yang, Yang Wang, Luying Sun, Xiaoning Qi, Fengbin Song, Xiancan Zhu
Agronomy.2020; 10(10): 1526. CrossRef
Long-term effects of vegetation and soil on the microbial communities following afforestation of farmland with Robinia pseudoacacia plantations
Miaoping Xu, Dexin Gao, Shuyue Fu, Xuqiao Lu, Shaojun Wu, Xinhui Han, Gaihe Yang, Yongzhong Feng
Geoderma.2020; 367: 114263. CrossRef
Effects of short-term manure nitrogen input on soil microbial community structure and diversity in a double-cropping paddy field of southern China
Haiming Tang, Chao Li, Xiaoping Xiao, Lihong Shi, Kaikai Cheng, Li Wen, Weiyan Li
Scientific Reports.2020;[Epub] CrossRef
Different types of agricultural land use drive distinct soil bacterial communities
Shin Ae Lee, Jeong Myeong Kim, Yiseul Kim, Jae-Ho Joa, Seong-Soo Kang, Jae-Hyung Ahn, Mincheol Kim, Jaekyeong Song, Hang-Yeon Weon
Scientific Reports.2020;[Epub] CrossRef
Effects of long‐term fertilizer management on soil bacterial diversity in double‐cropping paddy field of southern China
Haiming Tang, Yilan Xu, Chao Li, Xiaoping Xiao, Kaikai Cheng, Lihong Shi, Xiaochen Pan, Weiyan Li, Li Wen
Agronomy Journal.2020; 112(5): 3644. CrossRef
Long-term phosphorus limitation changes the bacterial community structure and functioning in paddy soils
Sandipan Samaddar, Poulami Chatterjee, Jaak Truu, Rangasamy Anandham, Sukjin Kim, Tongmin Sa
Applied Soil Ecology.2019; 134: 111. CrossRef
Long-term silicate fertilization increases the abundance of Actinobacterial population in paddy soils
Sandipan Samaddar, Jaak Truu, Poulami Chatterjee, Marika Truu, Kiyoon Kim, Sukjin Kim, Sundaram Seshadri, Tongmin Sa
Biology and Fertility of Soils.2019; 55(2): 109. CrossRef
The bacterial community structure and functional profile in the heavy metal contaminated paddy soils, surrounding a nonferrous smelter in South Korea
Sherlyn C. Tipayno, Jaak Truu, Sandipan Samaddar, Marika Truu, Jens‐Konrad Preem, Kristjan Oopkaup, Mikk Espenberg, Poulami Chatterjee, Yeongyeong Kang, Kiyoon Kim, Tongmin Sa
Ecology and Evolution.2018; 8(12): 6157. CrossRef
Soil bacterial community responses to black medic cover crop and fertilizer N under no-till
Newton Z. Lupwayi, William E. May, Derrick A. Kanashiro, Renee M. Petri
Applied Soil Ecology.2018; 124: 95. CrossRef
Aquatic plant debris changes sediment enzymatic activity and microbial community structure
Wan-Lei Xue, Wei Pan, Qi Lu, Qian-Ru Xu, Cai-Nan Wu, Shao-Ting Du
Environmental Science and Pollution Research.2018; 25(22): 21801. CrossRef
Soil microbial community and activity are affected by integrated agricultural practices in China
X. C. Zhu, L. Y. Sun, F. B. Song, S. Q. Liu, F. L. Liu, X. N. Li
European Journal of Soil Science.2018; 69(5): 924. CrossRef
Pyrosequencing reveals profiles of soil bacterial communities after 12 years of conservation management on irrigated crop rotations
Newton Z. Lupwayi, Francis J. Larney, Robert E. Blackshaw, Derrick A. Kanashiro, Drusilla C. Pearson, Renee M. Petri
Applied Soil Ecology.2017; 121: 65. CrossRef

Vertical distribution of bacterial community is associated with the degree of soil organic matter decomposition in the active layer of moist acidic tundra: Hye Min Kim , Min Jin Lee , Ji Young Jung , Chung Yeon Hwang , Mincheol Kim , Hee-Myong Ro , Jongsik Chun , Yoo Kyung Lee; J. Microbiol. 2016;54(11):713-723. Published online October 29, 2016; DOI: https://doi.org/10.1007/s12275-016-6294-2

54 View
0 Download
55 Crossref

Abstract

The increasing temperature in Arctic tundra deepens the active layer, which is the upper layer of permafrost soil that experiences repeated thawing and freezing. The increasing of soil temperature and the deepening of active layer seem to affect soil microbial communities. Therefore, information on soil microbial communities at various soil depths is essential to understand their potential responses to climate change in the active layer soil. We investigated the community structure of soil bacteria in the active layer from moist acidic tundra in Council, Alaska. We also interpreted their relationship with some relevant soil physicochemical characteristics along soil depth with a fine scale (5 cm depth interval). The bacterial community structure was found to change along soil depth. The relative abundances of Acidobacteria, Gammaproteobacteria, Planctomycetes, and candidate phylum WPS-2 rapidly decreased with soil depth, while those of Bacteroidetes, Chloroflexi, Gemmatimonadetes, and candidate AD3 rapidly increased. A structural shift was also found in the soil bacterial communities around 20 cm depth, where two organic (upper Oi and lower Oa) horizons are subdivided. The quality and the decomposition degree of organic matter might have influenced the bacterial community structure. Besides the organic matter quality, the vertical distribution of bacterial communities was also found to be related to soil pH and total phosphorus content. This study showed the vertical change of bacterial community in the active layer with a fine scale resolution and the possible influence of the quality of soil organic matter on shaping bacterial community structure.

Citations

Citations to this article as recorded by

Arctic tundra soil depth, more than seasonality, determines active layer bacterial community variation down to the permafrost transition
Casper T. Christiansen, Katja Engel, Michael Hall, Josh D. Neufeld, Virginia K. Walker, Paul Grogan
Soil Biology and Biochemistry.2025; 200: 109624. CrossRef
Lanthanum and cerium added to soil influence microbial carbon and nitrogen cycling genes
Alin Song, Zhiyuan Si, Duanyang Xu, Buqing Wei, Enzhao Wang, Fayao Chong, Fenliang Fan
Journal of Environmental Management.2025; 373: 123509. CrossRef
Comparative genomic analyses of aerobic planctomycetes isolated from the deep sea and the ocean surface
Lise Øvreås, Nicolai Kallscheuer, Rita Calisto, Nicola Bordin, Julia E. Storesund, Christian Jogler, Damien Devos, Olga Lage
Antonie van Leeuwenhoek.2025;[Epub] CrossRef
Responses of soil greenhouse gas emissions to soil mesofauna invasions and its driving mechanisms in the alpine tundra: A microcosm study
Yujuan Kang, Haitao Wu, Qiang Guan, Zhongsheng Zhang
Science of The Total Environment.2024; 908: 168255. CrossRef
Flood risk assessment in arid and semi-arid regions using Multi-criteria approaches and remote sensing in a data-scarce region
Mohamed Adou Sidi Almouctar, Yiping Wu, Shantao An, Xiaowei Yin, Caiqing Qin, Fubo Zhao, Linjing Qiu
Journal of Hydrology: Regional Studies.2024; 54: 101862. CrossRef
The microbiome structure and shifts in surface and subsurface soil horizon of Haplic Luvisol under different crops cultivation
Agata Gryta, Anna Piotrowska-Długosz, Jacek Długosz, Magdalena Frąc
Applied Soil Ecology.2024; 202: 105557. CrossRef
Dynamic responses of soil microbial communities to seasonal freeze-thaw cycles in a temperate agroecosystem
Fangbo Deng, Hongtu Xie, Tiantian Zheng, Yali Yang, Xuelian Bao, Hongbo He, Xudong Zhang, Chao Liang
Science of The Total Environment.2024; 950: 175228. CrossRef
Isolation of biocrust cyanobacteria and evaluation of Cu, Pb, and Zn immobilisation potential for soil restoration and sustainable agriculture
Carlotta Pagli, Sonia Chamizo, Giada Migliore, Lorenza Rugnini, Giovanni De Giudici, Roberto Braglia, Antonella Canini, Yolanda Cantón
Science of The Total Environment.2024; 946: 174020. CrossRef
Impact of floods and landslides on rhizosphere bacterial communities: a high-throughput 16S rRNA gene sequencing study
Haseena Abdulkader, Kulkarni Surendra Gopal, Sandeep Sasidharan
Environmental Science and Pollution Research.2024;[Epub] CrossRef
Microbiome structure variation and soybean’s defense responses during flooding stress and elevated CO2
Lauryn Coffman, Hector D. Mejia, Yelinska Alicea, Raneem Mustafa, Waqar Ahmad, Kerri Crawford, Abdul Latif Khan
Frontiers in Plant Science.2024;[Epub] CrossRef
Comparative analysis of prokaryotic microbiomes in high-altitude active layer soils: insights from Ladakh and global analogues using In-Silico approaches
Ahmad Ali, Tatiana A. Vishnivetskaya, Archana Chauhan
Brazilian Journal of Microbiology.2024; 55(3): 2437. CrossRef
Vertical and temporal variations in activity, abundance, and composition of nitrite-driven anaerobic methanotrophs in a paddy field
Caiyu Geng, Lidong Shen, Bingjie Ren, Hechen Huang, Jinghao Jin, Wangting Yang, Evgenios Agathokleous, Jiaqi Liu, Yuling Yang, Yanan Bai, Yuzhi Song
Applied Soil Ecology.2024; 197: 105342. CrossRef
Vertical fungal community distribution patterns along a stratified soil profile in subalpine Larix principis-rupprechtii plantations on China's Luya mountain
Xiaojun Qi, Xiaoxia Liang, Baofeng Chai, Tong Jia
Fungal Biology.2024; 128(8): 2285. CrossRef
Seasonal variation in near-surface seasonally thawed active layer and permafrost soil microbial communities
Christopher C M Baker, Amanda J Barker, Thomas A Douglas, Stacey J Doherty, Robyn A Barbato
Environmental Research Letters.2023; 18(5): 055001. CrossRef
Bacterial community diversity and underlying assembly patterns along vertical soil profiles in wetland and meadow habitats on the Zoige Plateau, China
Hao-Cai Wang, Jin-Feng Qi, De-Rong Xiao, Yi Wang, Wei-Yu Shi, Hang Wang
Soil Biology and Biochemistry.2023; 184: 109076. CrossRef
Understory ferns promote the restoration of soil microbial diversity and function in previously degraded lands
Yuming Lu, Maokui Lyu, Xiaoling Xiong, Cui Deng, Yongmeng Jiang, Min Zeng, Jinsheng Xie
Science of The Total Environment.2023; 870: 161934. CrossRef
Seasonal dynamics of microbial communities in rhizosphere and bulk soils of two temperate forests
Tianle Xu, Yawen Shen, Zongju Ding, Biao Zhu
Rhizosphere.2023; 25: 100673. CrossRef
Molecular Ecological Network Structure and Potential Function of the Bacterial Community in the Soil Profile under Indigenous Tree Plantations in Subtropical China
Lin Qin, Yufeng Wang, Angang Ming, Shouhong Xi, Zhirou Xiao, Jinqian Teng, Ling Tan
Forests.2023; 14(4): 803. CrossRef
Changes in soil stoichiometry, soil organic carbon mineralization and bacterial community assembly processes across soil profiles
Guozhen Gao, Guilong Li, Ming Liu, Pengfa Li, Jia Liu, Shiyu Ma, Daming Li, Evangelos Petropoulos, Meng Wu, Zhongpei Li
Science of The Total Environment.2023; 903: 166408. CrossRef
The Unusual Dominance of the Yeast Genus Glaciozyma in the Deeper Layer in an Antarctic Permafrost Core (Adélie Cove, Northern Victoria Land) Is Driven by Elemental Composition
Ciro Sannino, Luigimaria Borruso, Ambra Mezzasoma, Benedetta Turchetti, Stefano Ponti, Pietro Buzzini, Tanja Mimmo, Mauro Guglielmin
Journal of Fungi.2023; 9(4): 435. CrossRef
Responses of dissolved organic carbon to freeze–thaw cycles associated with the changes in microbial activity and soil structure
You Jin Kim, Jinhyun Kim, Ji Young Jung
The Cryosphere.2023; 17(7): 3101. CrossRef
The ecological response and distribution characteristics of microorganisms and polycyclic aromatic hydrocarbons in a retired coal gas plant post-thermal remediation site
Zhenhua Zhao, Barry Mody Oury, Liling Xia, Zhirui Qin, Xiangyu Pan, Jichan Qian, Fangzhou Luo, Yong Wu, Luqi Liu, Wei Wang
Science of The Total Environment.2023; 857: 159314. CrossRef
The vertical distribution and control factor of microbial biomass and bacterial community at macroecological scales
Libing He, Xiangyang Sun, Suyan Li, Wenzhi Zhou, Zhe Chen, Xueting Bai
Science of The Total Environment.2023; 869: 161754. CrossRef
Distribution of microbial communities in seasonally frozen soil layers on the Tibetan Plateau and the driving environmental factors
Xiaojie Wang, Zhiqiang Yu, Guofeng Shen, Hefa Cheng, Shu Tao
Environmental Science and Pollution Research.2023; 30(1): 1919. CrossRef
From Surface to Subsurface: Diversity, Composition, and Abundance of Sessile and Endolithic Bacterial, Archaeal, and Eukaryotic Communities in Sand, Clay and Rock Substrates in the Laurentians (Quebec, Canada)
Julia Meyer, Sheri Zakhary, Marie Larocque, Cassandre S. Lazar
Microorganisms.2022; 10(1): 129. CrossRef
Microbiogeochemical Traits to Identify Nitrogen Hotspots in Permafrost Regions
Claudia Fiencke, Maija E. Marushchak, Tina Sanders, Rica Wegner, Christian Beer
Nitrogen.2022; 3(3): 458. CrossRef
Temporal Variations Rather than Long-Term Warming Control Extracellular Enzyme Activities and Microbial Community Structures in the High Arctic Soil
Jeongeun Yun, Ji Young Jung, Min Jung Kwon, Juyoung Seo, Sungjin Nam, Yoo Kyung Lee, Hojeong Kang
Microbial Ecology.2022; 84(1): 168. CrossRef
Vertical and temporal variations of soil bacterial and archaeal communities in wheat-soybean rotation agroecosystem
Mika Yokota, Yupeng Guan, Yi Fan, Ximei Zhang, Wei Yang
PeerJ.2022; 10: e12868. CrossRef
Distribution characteristics and factors influencing microbial communities in the core soils of a seawater intrusion area in Longkou City, China
Shilei Sang, Heng Dai, Bill X. Hu, Zhenyu Huang, Yujiao Liu, Lijia Xu
Hydrogeology Journal.2022; 30(6): 1833. CrossRef
Summer thaw duration is a strong predictor of the soil microbiome and its response to permafrost thaw in arctic tundra
Karl J. Romanowicz, George W. Kling
Environmental Microbiology.2022; 24(12): 6220. CrossRef
Microbial communities in the diagnostic horizons of agricultural Isohumosols in northeast China reflect their soil classification
Zhuxiu Liu, Haidong Gu, Qin Yao, Feng Jiao, Junjie Liu, Jian Jin, Xiaobing Liu, Guanghua Wang
CATENA.2022; 216: 106430. CrossRef
Vertical distribution patterns and drivers of soil bacterial communities across the continuous permafrost region of northeastern China
Baihui Ren, Yuanman Hu, Rencang Bu
Ecological Processes.2022;[Epub] CrossRef
Spatial Variation of Microbial Community Structure and Its Driving Environmental Factors in Two Forest Types in Permafrost Region of Greater Xing′an Mountains
Dandan Song, Yuanquan Cui, Dalong Ma, Xin Li, Lin Liu
Sustainability.2022; 14(15): 9284. CrossRef
Differences in microbial diversity and environmental factors in ploughing-treated tobacco soil
Yuzhen Zhang, Guodong Bo, Minchong Shen, Guoming Shen, Jianming Yang, Shanyu Dong, Zhaohe Shu, Zhaobao Wang
Frontiers in Microbiology.2022;[Epub] CrossRef
The relationships of present vegetation, bacteria, and soil properties with soil organic matter characteristics in moist acidic tundra in Alaska
Sungjin Nam, Josu G. Alday, Mincheol Kim, Hyemin Kim, Yongkang Kim, Taesung Park, Hyoun Soo Lim, Bang Yong Lee, Yoo Kyung Lee, Ji Young Jung
Science of The Total Environment.2021; 772: 145386. CrossRef
Characteristics of microbial community composition and its relationship with carbon, nitrogen and sulfur in sediments
Wenfei Liao, Di Tong, Zhongwu Li, Xiaodong Nie, Yaojun Liu, Fengwei Ran, Shanshan Liao
Science of The Total Environment.2021; 795: 148848. CrossRef
Impact of River Channel Lateral Migration on Microbial Communities across a Discontinuous Permafrost Floodplain
Madison M. Douglas, Usha F. Lingappa, Michael P. Lamb, Joel C. Rowland, A. Joshua West, Gen Li, Preston C. Kemeny, Austin J. Chadwick, Anastasia Piliouras, Jon Schwenk, Woodward W. Fischer, Isaac Cann
Applied and Environmental Microbiology.2021;[Epub] CrossRef
Rainfall Alters Permafrost Soil Redox Conditions, but Meta-Omics Show Divergent Microbial Community Responses by Tundra Type in the Arctic
Karl J. Romanowicz, Byron C. Crump, George W. Kling
Soil Systems.2021; 5(1): 17. CrossRef
Soil bacterial communities vary more by season than with over two decades of experimental warming in Arctic tussock tundra
Grace Pold, Joshua P. Schimel, Seeta A. Sistla
Elementa: Science of the Anthropocene.2021;[Epub] CrossRef
Changes in microbial biomass, community composition and diversity, and functioning with soil depth in two alpine ecosystems on the Tibetan plateau
Tianle Xu, Xiao Chen, Yanhui Hou, Biao Zhu
Plant and Soil.2021; 459(1-2): 137. CrossRef
Nanoscale zerovalent iron, carbon nanotubes and biochar facilitated the phytoremediation of cadmium contaminated sediments by changing cadmium fractions, sediments properties and bacterial community structure
Xiaomin Gong, Danlian Huang, Yunguo Liu, Dongsheng Zou, Xi Hu, Lu Zhou, Zhibin Wu, Yang Yang, Zhihua Xiao
Ecotoxicology and Environmental Safety.2021; 208: 111510. CrossRef
Abiotic factors affecting the bacterial and fungal diversity of permafrost in a rock glacier in the Stelvio Pass (Italian Central Alps)
Ciro Sannino, Luigimaria Borruso, Ambra Mezzasoma, Dario Battistel, Stefano Ponti, Benedetta Turchetti, Pietro Buzzini, Mauro Guglielmin
Applied Soil Ecology.2021; 166: 104079. CrossRef
Organic Carbon Mineralization and Bacterial Community of Active Layer Soils Response to Short-Term Warming in the Great Hing’an Mountains of Northeast China
Xingfeng Dong, Chao Liu, Dalong Ma, Yufei Wu, Haoran Man, Xiangwen Wu, Miao Li, Shuying Zang
Frontiers in Microbiology.2021;[Epub] CrossRef
The Effects of Soil Depth on the Structure of Microbial Communities in Agricultural Soils in Iowa (United States)
Jingjie Hao, Yen Ning Chai, Lucas Dantas Lopes, Raziel A. Ordóñez, Emily E. Wright, Sotirios Archontoulis, Daniel P. Schachtman, Jeremy D. Semrau
Applied and Environmental Microbiology.2021;[Epub] CrossRef
Microbial community structure in the river sediments from upstream of Guanting Reservoir: Potential impacts of reclaimed water recharge
En Xie, Xiaohui Zhao, Kun Li, Panwei Zhang, Xiuhua Zhou, Xiao Zhao
Science of The Total Environment.2021; 766: 142609. CrossRef
Substrate quality and not dominant plant community determines the vertical distribution and C assimilation of enchytraeids in peatlands
María Jesús Iglesias Briones, Noela Carrera, Jinhua Huang, Maria Esther Barreal, Rüdiger Maria Schmelz, Mark H. Garnett, Hefin Jones
Functional Ecology.2020; 34(6): 1280. CrossRef
Spatial Distribution of Toxic Metal(loid)s and Microbial Community Analysis in Soil Vertical Profile at an Abandoned Nonferrous Metal Smelting Site
Jiejie Yang, Siqi Wang, Ziwen Guo, Yan Deng, Menglong Xu, Siyuan Zhang, Huaqun Yin, Yili Liang, Hongwei Liu, Bo Miao, Delong Meng, Xueduan Liu, Luhua Jiang
International Journal of Environmental Research and Public Health.2020; 17(19): 7101. CrossRef
Dynamics of microbial communities and CO2 and CH4 fluxes in the tundra ecosystems of the changing Arctic
Min Jung Kwon, Ji Young Jung, Binu M. Tripathi, Mathias Göckede, Yoo Kyung Lee, Mincheol Kim
Journal of Microbiology.2019; 57(5): 325. CrossRef
Variations in bacterial and archaeal communities along depth profiles of Alaskan soil cores
Binu Mani Tripathi, Mincheol Kim, Yongwon Kim, Eunji Byun, Ji-Woong Yang, Jinho Ahn, Yoo Kyung Lee
Scientific Reports.2018;[Epub] CrossRef
Microbial diversity and biogeography in Arctic soils
Lucie A. Malard, David A. Pearce
Environmental Microbiology Reports.2018; 10(6): 611. CrossRef
Development of Shallow-Depth Soil Temperature Estimation Model Based on Thermal Response in Permafrost Area
Keunbo Park, Heekwon Yang, Bang Yong Lee, Dongwook Kim
Applied Sciences.2018; 8(10): 1886. CrossRef
Vertical profiles of microbial communities in perfluoroalkyl substance-contaminated soils
Yixiang Bao, Bingxin Li, Shuguang Xie, Jun Huang
Annals of Microbiology.2018; 68(6): 399. CrossRef
On the maverick Planctomycetes
Sandra Wiegand, Mareike Jogler, Christian Jogler
FEMS Microbiology Reviews.2018; 42(6): 739. CrossRef
Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates
Oliver Müller, Toke Bang‐Andreasen, Richard Allen White, Bo Elberling, Neslihan Taş, Timothy Kneafsey, Janet K. Jansson, Lise Øvreås
Environmental Microbiology.2018; 20(12): 4328. CrossRef
Soil Phospholipid Fatty Acid Biomarkers and β‐Glucosidase Activities after Long‐Term Manure and Fertilizer N Applications
Newton Z. Lupwayi, Derrick A. Kanashiro, Andrea H. Eastman, Xiying Hao
Soil Science Society of America Journal.2018; 82(2): 343. CrossRef

Dominant genera of cyanobacteria in Lake Taihu and their relationships with environmental factors: Lijun Feng , Shiyou Liu , Wenxian Wu , Jiawen Ma , Pei Li , Hailing Xu , Na Li , Yaoyu Feng; J. Microbiol. 2016;54(7):468-476. Published online June 28, 2016; DOI: https://doi.org/10.1007/s12275-016-6037-4

49 View
0 Download
16 Crossref

Abstract

Cyanobacterial blooms in freshwaters have become one of the most widespread of environmental problems and threaten water resources worldwide. Previous studies on cyanobacteria in Lake Taihu often collected samples from one site (like Meiliang Bay or Zhushan Bay) and focused on the variation in patterns or abundance of Microcystis during the blooming season. However, the distribution of cyanobacteria in Lake Taihu shows differing pattern in various seasons. In this study, water samples were collected monthly for one year at five sites in Lake Taihu with different trophic status and a physicochemical analysis and denaturing gradient gel electrophoresis (DGGE) were conducted. DGGE fingerprint analysis showed that Microcystis (7/35 bands) and Synechococcus (12/35 bands) were the two most dominant genera present during the study period at all five sites. Cyanobium (3/35 bands) was the third most common genus which has seldom been previously reported in Lake Taihu. Redundancy analysis (RDA) indicated that the cyanobacterial community structure was significantly correlated with NO3 --N, CODMn, and NH4 +-N in the winter and spring, whereas it was correlated with water temperature in the summer and autumn. Limiting the nutrient input (especially of N and C loading) in Lake Taihu would be a key factor in controlling the growth of different genera of cyanobacteria.

Citations

Citations to this article as recorded by

Harmful Cyanobacterial Blooms: Going beyond the “Green” to Monitor and Predict HCBs
Daniela R. de Figueiredo
Hydrobiology.2024; 3(1): 11. CrossRef
A framework for identifying factors controlling cyanobacterium Microcystis flos‐aquae blooms by coupled CCM–ECCM Bayesian networks
O. Tal, I. Ostrovsky, G. Gal
Ecology and Evolution.2024;[Epub] CrossRef
Analyzing MC-LR distribution characteristics in natural lakes by a novel fluorescence technology
Xiangyu Hu, Zhaomin Wang, Xiao Ye, Ping Xie, Yong Liu
Environmental Pollution.2024; 342: 123123. CrossRef
The β-Lactamase Activity at the Community Level Confers β-Lactam Resistance to Bloom-Forming Microcystis aeruginosa Cells
Yerim Park, Wonjae Kim, Minkyung Kim, Woojun Park
Journal of Microbiology.2023; 61(9): 807. CrossRef
Identification of driving factors for chlorophyll‐a in multi‐stable shallow lakes of China employing machine learning methods
Shan Qu, Jian‐jian Wang, Amit Kumar, Zhi‐Guo Yu, Wan‐Qi Zhao
Ecohydrology.2023;[Epub] CrossRef
Multi-proxy approaches to investigate cyanobacteria invasion from a eutrophic lake into the circumjacent groundwater
Sisi Ye, Li Gao, Arash Zamyadi, Caitlin M. Glover, Ning Ma, Haiming Wu, Ming Li
Water Research.2021; 204: 117578. CrossRef
Killing effect of deinoxanthins on cyanobloom-forming Microcystis aeruginosa: Eco-friendly production and specific activity of deinoxanthins
Wonjae Kim, Minkyung Kim, Minyoung Hong, Woojun Park
Environmental Research.2021; 200: 111455. CrossRef
Alteration of dominant cyanobacteria in different bloom periods caused by abiotic factors and species interactions
Zhenyan Zhang, Xiaoji Fan, W.J.G.M. Peijnenburg, Meng Zhang, Liwei Sun, Yujia Zhai, Qi Yu, Juan Wu, Tao Lu, Haifeng Qian
Journal of Environmental Sciences.2021; 99: 1. CrossRef
Mechanism and control strategy of cyanobacterial bloom in Lake Taihu
YANG Liuyan, YANG Xinyan, REN Liman, QIAN Xin, XIAO Lin
Journal of Lake Sciences.2019; 31(1): 18. CrossRef
Effects of nitrogen on interspecific competition between two cell-size cyanobacteria: Microcystis aeruginosa and Synechococcus sp.
Xiao Tan, Huihui Gu, Yinlan Ruan, Jiajia Zhong, Keshab Parajuli, Jianyong Hu
Harmful Algae.2019; 89: 101661. CrossRef
Effects of Phosphorus on Interspecific Competition between two cell-size Cyanobacteria: Synechococcus sp. and Microcystis aeruginosa
Xiao Tan, Huihui Gu, Xidong Zhang, Keshab Parajuli, Zhipeng Duan
Bulletin of Environmental Contamination and Toxicology.2019; 102(2): 231. CrossRef
High-throughput DNA sequencing reveals the dominance of pico- and other filamentous cyanobacteria in an urban freshwater Lake
Hanyan Li, Anwar Alsanea, Michael Barber, Ramesh Goel
Science of The Total Environment.2019; 661: 465. CrossRef
Influence of cyanobacteria, mixotrophic flagellates, and virioplankton size fraction on transcription of microcystin synthesis genes in the toxic cyanobacterium Microcystis aeruginosa
Pia I. Scherer, Carolin Absmeier, Maria Urban, Uta Raeder, Juergen Geist, Katrin Zwirglmaier
MicrobiologyOpen.2018;[Epub] CrossRef
Parameter uncertainty and sensitivity analysis of water quality model in Lake Taihu, China
Long Jiang, Yiping Li, Xu Zhao, Martin R. Tillotson, Wencai Wang, Shuangshuang Zhang, Linda Sarpong, Qhtan Asmaa, Baozhu Pan
Ecological Modelling.2018; 375: 1. CrossRef
Microbial Communities Shaped by Treatment Processes in a Drinking Water Treatment Plant and Their Contribution and Threat to Drinking Water Safety
Qi Li, Shuili Yu, Lei Li, Guicai Liu, Zhengyang Gu, Minmin Liu, Zhiyuan Liu, Yubing Ye, Qing Xia, Liumo Ren
Frontiers in Microbiology.2017;[Epub] CrossRef
Species Composition and Spatio-Temporal Variations of Phytoplankton of Lake Uluabat
Nurhayat DALKIRAN, Didem KARACAOĞLU, Şükran DERE, Şakir ÇINAR, Cafer BULUT, Soner SAVAŞER
Journal of Limnology and Freshwater Fisheries Research.2016; 2(3): 121. CrossRef

Research Support, Non-U.S. Gov'ts

Effect of Long-Term Different Fertilization on Bacterial Community Structures and Diversity in Citrus Orchard Soil of Volcanic Ash: Jae Ho Joa , Hang Yeon Weon , Hae Nam Hyun , Young Chull Jeun , Sang Wook Koh; J. Microbiol. 2014;52(12):995-1001. Published online November 29, 2014; DOI: https://doi.org/10.1007/s12275-014-4129-6

47 View
0 Download
27 Crossref

Abstract

This study was conducted to assess bacterial species richness, diversity and community distribution according to different fertilization regimes for 16 years in citrus orchard soil of volcanic ash. Soil samples were collected and analyzed from Compost (cattle manure, 2,000 kg/10a), 1/2 NPK+compost (14-20-14+2,000 kg/10a), NPK+compost (28-40-28+2,000 kg/10a), NPK (28-40-28 kg/10a), 3 NPK (84-120-84 kg/10a), and Control (no fertilization) plot which have been managed in the same manners with compost and different amount of chemical fertilization. The range of pyrosequencing reads and OTUs were 4,687–7,330 and 1,790–3,695, respectively. Species richness estimates such as Ace, Chao1, and Shannon index were higher in 1/2 NPK+compost than other treatments, which were 15,202, 9,112, 7.7, respectively. Dominant bacterial groups at level of phylum were Proteobacteria, Acidobacteria, and Actinobacteria. Those were occupied at 70.9% in 1/2 NPK+compost. Dominant bacterial groups at level of genus were Pseudolabrys, Bradyrhizobium, and Acidobacteria. Those were distributed at 14.4% of a total of bacteria in Compost. Soil pH displayed significantly closely related to bacterial species richness estimates such as Ace, Chao1 (p<0.05) and Shannon index (p<0.01). However, it showed the negative correlation with exchangeable aluminum contents (p<0.05). In conclusion, diversity of bacterial community in citrus orchard soil was affected by fertilization management, soil pH changes and characteristics of volcanic ash.

Citations

Citations to this article as recorded by

Responses of Nutrients and Bacterial Communities to Temperature and Nitrogen Addition in Rhizosphere Soil for Malus sieversii Seedlings
Huanhuan Zhang, Jinshan Xi, Hossam Salah Mahmoud Ali, Fengyun Zhao, Songlin Yu, Kun Yu
Journal of Soil Science and Plant Nutrition.2024; 24(2): 2786. CrossRef
Effects of peach branch organic fertilizer on the soil microbial community in peach orachards
Chenyu Liu, Defeng Han, Haiqing Yang, Zhiling Liu, Chengda Gao, Yueping Liu
Frontiers in Microbiology.2023;[Epub] CrossRef
Microbial contribution to organic carbon accumulation in volcanic ash soils
Hye In Yang, Nuri Baek, Jin-Hyeob Kwak, Sang-Sun Lim, Young-Han Lee, Sang-Mo Lee, Woo-Jung Choi
Journal of Soils and Sediments.2023; 23(2): 866. CrossRef
Variation of soil bacterial communities in a chronosequence of citrus orchard
Ya-bo Jin, Zheng Fang, Xin-bin Zhou
Annals of Microbiology.2022;[Epub] CrossRef
Changes in Soil Microbial Community along a Chronosequence of Perennial Mugwort Cropping in Northern China Plain
Furong Tian, Zhenxing Zhou, Xuefei Wang, Kunpeng Zhang, Shijie Han
Agronomy.2022; 12(7): 1568. CrossRef
Spatiotemporal prediction and optimization of environmental suitability in citrus-producing areas
Zhenyu Wu, Shizhao Zou, Yong Yang, Xue Yang, Qingzhong Han, Chang Chen, Mingxia Wang, Wenfeng Tan
Frontiers in Environmental Science.2022;[Epub] CrossRef
Soil Microbes Drive the Flourishing Growth of Plants From Leucocalocybe mongolica Fairy Ring
Qiqi Wang, Chong Wang, Yumei Wei, Weiqin Yao, Yonghui Lei, Yanfei Sun
Frontiers in Microbiology.2022;[Epub] CrossRef
Effects of Temperature and Nitrogen Application on Carbon and Nitrogen Accumulation and Bacterial Community Composition in Apple Rhizosphere Soil
Huanhuan Zhang, Fesobi Olumide Phillip, Linnan Wu, Fengyun Zhao, Songlin Yu, Kun Yu
Frontiers in Plant Science.2022;[Epub] CrossRef
Changes in soil physicochemical properties and bacterial communities at different soil depths after long-term straw mulching under a no-till system
Zijun Zhou, Zengqiang Li, Kun Chen, Zhaoming Chen, Xiangzhong Zeng, Hua Yu, Song Guo, Yuxian Shangguan, Qingrui Chen, Hongzhu Fan, Shihua Tu, Mingjiang He, Yusheng Qin
SOIL.2021; 7(2): 595. CrossRef
Recovery of Nitrogen and Phosphorus Nutrition from Anaerobic Digestate by Natural Superabsorbent Fiber-Based Adsorbent and Reusing as an Environmentally Friendly Slow-Release Fertilizer for Horticultural Plants
Le Zhang, Kai-Chee Loh, Suseeven Sarvanantharajah, Ye Shen, Yen Wah Tong, Chi-Hwa Wang, Yanjun Dai
Waste and Biomass Valorization.2020; 11(10): 5223. CrossRef
Candidatus Liberibacter asiaticus: virulence traits and control strategies
Maxuel Andrade, Jinyun Li, Nian Wang
Tropical Plant Pathology.2020; 45(3): 285. CrossRef
Alteration of soil nitrifiers and denitrifiers and their driving factors during intensive management of Moso bamboo (Phyllostachys pubescens)
Linhua Cao, Xiao Yu, Caixia Liu, Ming Liu, Junhui Chen, Hua Qin, Chenfei Liang, Qiufang Xu, Petri Penttinen
Science of The Total Environment.2020; 705: 135236. CrossRef
Seasonal Change in Microbial Diversity and Its Relationship with Soil Chemical Properties in an Orchard
Xuhui Luo, Ming Kuang Wang, Guiping Hu, Boqi Weng, Varenyam Achal
PLOS ONE.2019; 14(12): e0215556. CrossRef
Long-term inorganic fertilizer use influences bacterial communities in Mollisols of Northeast China based on high-throughput sequencing and network analyses
Zhenhua Yu, Xiaojing Hu, Dan Wei, Junjie Liu, Baoku Zhou, Jian Jin, Xiaobing Liu, Guanghua Wang
Archives of Agronomy and Soil Science.2019; 65(10): 1331. CrossRef
A preliminary examination of bacterial, archaeal, and fungal communities inhabiting different rhizocompartments of tomato plants under real-world environments
Shin Ae Lee, Yiseul Kim, Jeong Myeong Kim, Bora Chu, Jae-Ho Joa, Mee Kyung Sang, Jaekyeong Song, Hang-Yeon Weon
Scientific Reports.2019;[Epub] CrossRef
Soil aggregates regulate the impact of soil bacterial and fungal communities on soil respiration
Chao Yang, Nan Liu, Yingjun Zhang
Geoderma.2019; 337: 444. CrossRef
Challenges for Managing Candidatus Liberibacter spp. (Huanglongbing Disease Pathogen): Current Control Measures and Future Directions
Ryan A. Blaustein, Graciela L. Lorca, Max Teplitski
Phytopathology®.2018; 108(4): 424. CrossRef
Soil productivity and structure of bacterial and fungal communities in unfertilized arable soil
Boxi Wang, Yoichi Adachi, Shuichi Sugiyama, Lorenzo Brusetti
PLOS ONE.2018; 13(9): e0204085. CrossRef
Bradyrhizobium japonicum USDA110: A representative model organism for studying the impact of pollutants on soil microbiota
Vishal Shah, Sanjana Subramaniam
Science of The Total Environment.2018; 624: 963. CrossRef
Manure and mineral fertilization change enzyme activity and bacterial community in millet rhizosphere soils
Lixia Xu, Min Yi, Huilan Yi, Erhu Guo, Aiying Zhang
World Journal of Microbiology and Biotechnology.2018;[Epub] CrossRef
Influence of rhinoceros beetle (Trypoxylus dichotomus septentrionalis) larvae and temperature on the soil bacterial community composition under laboratory conditions
Jinu Eo, Young-Eun Na, Myung-Hyun Kim
Soil Biology and Biochemistry.2017; 108: 27. CrossRef
Responses of N2O reductase gene (nosZ)-denitrifier communities to long-term fertilization follow a depth pattern in calcareous purplish paddy soil
Ying-yan WANG, Sheng-e LU, Quan-ju XIANG, Xiu-mei YU, Ke ZHAO, Xiao-ping ZHANG, Shi-hua TU, Yun-fu GU
Journal of Integrative Agriculture.2017; 16(11): 2597. CrossRef
Long-term effects of imbalanced fertilization on the composition and diversity of soil bacterial community
Jinu Eo, Kee-Choon Park
Agriculture, Ecosystems & Environment.2016; 231: 176. CrossRef
Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies
Davide Francioli, Elke Schulz, Guillaume Lentendu, Tesfaye Wubet, François Buscot, Thomas Reitz
Frontiers in Microbiology.2016;[Epub] CrossRef
Illumina high-throughput sequencing and comparative analysis of bacterial communities in cherry orchard soil
Lingzhi Liu, Deguo Lyu, Jingyun Li, Zeyuan Yang, Sijun Qin
Toxicological & Environmental Chemistry.2016; 98(3-4): 462. CrossRef
Comparative analysis of bacterial diversity in the rhizosphere of tomato by culture-dependent and -independent approaches
Shin Ae Lee, Jiyoung Park, Bora Chu, Jeong Myeong Kim, Jae-Ho Joa, Mee Kyung Sang, Jaekyeong Song, Hang-Yeon Weon
Journal of Microbiology.2016; 54(12): 823. CrossRef
Soil pH and electrical conductivity are key edaphic factors shaping bacterial communities of greenhouse soils in Korea
Jeong Myeong Kim, An-Sung Roh, Seung-Chul Choi, Eun-Jeong Kim, Moon-Tae Choi, Byung-Koo Ahn, Sun-Kuk Kim, Young-Han Lee, Jae-Ho Joa, Seong-Soo Kang, Shin Ae Lee, Jae-Hyung Ahn, Jaekyeong Song, Hang-Yeon Weon
Journal of Microbiology.2016; 54(12): 838. CrossRef

Pyrosequencing Analysis of the Bacterial Communities in the Guts of Honey Bees Apis cerana and Apis mellifera in Korea: Jae-Hyung Ahn , In-Pyo Hong , Jeung-Im Bok , Byung-Yong Kim , Jaekyeong Song , Hang-Yeon Weon; J. Microbiol. 2012;50(5):735-745. Published online November 4, 2012; DOI: https://doi.org/10.1007/s12275-012-2188-0

38 View
0 Download
91 Scopus

Abstract: The bacterial communities in the guts of the adults and larvae of the Asian honey bee Apis cerana and the European honey bee Apis mellifera were surveyed by pyrosequencing the 16S rRNA genes. Most of the gut bacterial 16S rRNA gene sequences were highly similar to the known honey bee-specific ones and affiliated with Pasteurellaceae or lactic acid bacteria (LAB). The numbers of operational taxonomic units (OTUs, defined at 97% similarity) were lower in the larval guts (6 or 9) than in the adult guts (18 or 20), and the frequencies of Pasteurellaceae-related OTUs were higher in the larval guts while those of LAB-related OTUs in the adult guts. The frequencies of Lactococcus, Bartonella, Spiroplasma, Enterobacteriaceae, and Flavobacteriaceae-related OTUs were much higher in A. cerana guts while Bifidobacterium and Lachnospiraceae-related OTUs were more abundant in A. mellfera guts. The bacterial community structures in the midguts and hindguts of the adult honey bees were not different for A. cerana, but significantly different for A. mellifera. The above results substantiated the previous observation that honey bee guts are dominated by several specific bacterial groups, and also showed that the relative abundances of OTUs could be markedly changed depending on the developmental stage, the location within the gut, and the honey bee species. The possibility of using the gut bacterial community as an indicator of honey bee health was discussed.

Polymerase Chain Reaction-Denaturing Gradient Gel Electrophoresis Analysis of Bacterial Community Structure in the Food, Intestines, and Feces of Earthworms: Sung Wook Hong , Ju Sam Lee , Kun Sub Chung; J. Microbiol. 2011;49(4):544-550. Published online September 2, 2011; DOI: https://doi.org/10.1007/s12275-011-0423-8

40 View
0 Download
4 Crossref

Abstract

The bacterial communities in the food, intestines, and feces of earthworms were investigated by PCR-denaturing gradient gel electrophoresis (DGGE). In this study, PCR-DGGE was optimized by testing 6 universal primer sets for microbial 16S rRNA in 6 pure culture strains of intestinal microbes in earthworms. One primer set effectively amplified 16S rRNA from bacterial populations that were found in the food, intestines, and feces of earthworms. Compared with the reference markers from the pure culture strains, the resulting DGGE profiles contained 28 unique DNA fragments. The dominant microorganisms in the food, intestines, and feces of earthworms included Rhodobacterales bacterium, Fusobacteria, Ferrimonas marina, Aeromonas popoffii, and soil bacteria. Other strains, such as Acinetobacter, Clostridium, and Veillonella, as well as rumen bacteria and uncultured bacteria also were present. These results demonstrated that PCR-DGGE analysis can be used to elucidate bacterial diversity and identify unculturable microorganisms.

Citations

Citations to this article as recorded by

Effects of rhamnolipids on bacterial communities in a dioxin-contaminated soil and the gut of earthworms added to the soil
Bing XIA, Dan HUANG, Mao YE, Hao QIU, Hongfeng CHEN, Keqiang ZHAO, Rongliang QIU, Rongrong YING
Pedosphere.2023; 33(6): 927. CrossRef
Analysis of Rhizosphere Soil Bacterial Communities on Seonginbong, Ulleungdo Island
Yoon-Jong Nam, Hyeokjun Yoon, Hyun Kim, Jong-Guk Kim
Journal of Life Science.2015; 25(3): 323. CrossRef
Metagenomic analysis of bacterial communities on Dokdo Island
Ye-Eun Kim, Hyeokjun Yoon, Miae Kim, Yoon-Jong Nam, Hyun Kim, Yeonggyo Seo, Gyeong-Min Lee, Young Ja Kim, Won-Sik Kong, Jong-Guk Kim, Young-Bae Seu
The Journal of General and Applied Microbiology.2014; 60(2): 65. CrossRef
DGGE analysis of buffalo manure eubacteria for hydrogen production: effect of pH, temperature and pretreatments
Petronia Carillo, Claudia Carotenuto, Filomena Di Cristofaro, Ioannis Kafantaris, Carmine Lubritto, Mario Minale, Biagio Morrone, Stefania Papa, Pasqualina Woodrow
Molecular Biology Reports.2012; 39(12): 10193. CrossRef

Journal Article

Monitoring Nutrient Impact on Bacterial Community Composition during Bioremediation of Anoxic PAH-Contaminated Sediment: Myungsu Kim , Seung Seob Bae , Mijin Seol , Jung-Hyun Lee , Young-Sook Oh; J. Microbiol. 2008;46(6):615-623. Published online December 24, 2008; DOI: https://doi.org/10.1007/s12275-008-0097-z

62 View
0 Download
10 Crossref

Abstract

Marine harbor sediments are frequently polluted with significant amount of polycyclic aromatic hydrocarbons (PAHs) some of which are naturally toxic, recalcitrant, mutagenic, and carcinogenic. To stimulate biodegradation of PAHs in PAH-contaminated sediments collected from near Gwangyang Bay, Korea, lactate was chosen as a supplementary carbonaceous substrate. Sediment packed into 600 ml air-tight jar was either under no treatment condition or lactate amended condition (1%, w/v). Microbial community composition was monitored by bacteria-specific and archaea-specific PCR-terminal restriction fragment length polymorphism (T-RFLP), in addition to measuring the residual PAH concentration. Results showed that lactate amendment enhanced biodegradation rate of PAHs in the sediment by 4 to 8 times, and caused a significant shift in archaebacterial community in terms of structure and diversity with time. Phylogenetic analysis of 23 archaeal clones with distinctive RFLP patterns among 288 archaeal clones indicated that majority of the archaeal members were closest to unculturable environmental rDNA clones from hydrocarbon-contaminated and/or methanogenesis-bearing sediments. Lactate amendment led to the enrichment of some clones that were most closely related to PAH-degrading Methanosarcina species. These results suggest a possible contribution of methanogenic community to PAH degradation and give us more insights on how to effectively remediate PAH-contaminated sediments.

Citations

Citations to this article as recorded by

Effects of electron acceptors and donors on anaerobic biodegradation of PAHs in marine sediments
Qingguo Chen, Zhenzhen Li, Yu Chen, Mei Liu, Qiao Yang, Baikang Zhu, Jun Mu, Lijuan Feng, Zhi Chen
Marine Pollution Bulletin.2024; 199: 115925. CrossRef
Electrical current generation from a continuous flow macrophyte biocathode sediment microbial fuel cell (mSMFC) during the degradation of pollutants in urban river sediment
Felix Tetteh Kabutey, Jing Ding, Qingliang Zhao, Philip Antwi, Frank Koblah Quashie
Environmental Science and Pollution Research.2020; 27(28): 35364. CrossRef
Application of in situ Solid-Phase Microextraction on Mediterranean Sponges for Untargeted Exometabolome Screening and Environmental Monitoring
Barbara Bojko, Bora Onat, Ezel Boyaci, Eleftheria Psillakis, Thanos Dailianis, Janusz Pawliszyn
Frontiers in Marine Science.2019;[Epub] CrossRef
Effect of carbonyl cyanide m-chlorophenylhydrazone (CCCP) on microbial activity and polycyclic aromatic hydrocarbons (PAH) degradation in contaminated river sediments
G. Patricia Johnston, Z. Kalik, C. G. Johnston
Environmental Earth Sciences.2016;[Epub] CrossRef
Effects of polycyclic aromatic hydrocarbons on microbial community structure and PAH ring hydroxylating dioxygenase gene abundance in soil
Przemyslaw Sawulski, Nicholas Clipson, Evelyn Doyle
Biodegradation.2014; 25(6): 835. CrossRef
Anthracene biodegradation under nitrate-reducing condition and associated microbial community changes
Ying Wang, Rui Wan, Shuying Zhang, Shuguang Xie
Biotechnology and Bioprocess Engineering.2012; 17(2): 371. CrossRef
Molecular characterization of phenanthrene-degrading methanogenic communities in leachate-contaminated aquifer sediment
S. Y. Zhang, Q. F. Wang, S. G. Xie
International Journal of Environmental Science and Technology.2012; 9(4): 705. CrossRef
Increment in Anaerobic Hydrocarbon Degradation Activity of Halic Bay Sediments via Nutrient Amendment
Mustafa Kolukirik, Orhan Ince, Bahar K. Ince
Microbial Ecology.2011; 61(4): 871. CrossRef
Revealing archaeal diversity patterns and methane fluxes in Admiralty Bay, King George Island, and their association to Brazilian Antarctic Station activities
C.R. Nakayama, E. Kuhn, A.C.V. Araújo, P.C. Alvalá, W.J. Ferreira, R.F. Vazoller, V.H. Pellizari
Deep Sea Research Part II: Topical Studies in Oceanography.2011; 58(1-2): 128. CrossRef
Bioremediation of marine sediments contaminated by hydrocarbons: Experimental analysis and kinetic modeling
Francesca Beolchini, Laura Rocchetti, Francesco Regoli, Antonio Dell’Anno
Journal of Hazardous Materials.2010; 182(1-3): 403. CrossRef

First
Prev
Page of 2
Next
Last

Search