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- Description of Fervidibacillus gen. nov. with Two Species, Fervidibacillus albus sp. nov., and Fervidibacillus halotolerans sp. nov., Isolated from Tidal Flat Sediments and Emendation of Misclassificed Taxa in the Genus Caldibacillus
- Sung&# , Mi&# , Hyun&# , Kae Kyoung Kwon
- J. Microbiol. 2023;61(2):175-187. Published online February 17, 2023
- DOI: https://doi.org/10.1007/s12275-023-00022-y
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Abstract
- Two Gram-stain-positive, motile, endospore-forming, facultatively anaerobic strains, designated MEBiC13591T and MEBiC13594T, were isolated from tidal flat sediment of the Incheon City on the west coast of Korea. Growth of both novel strains was observed at pH 5–9 (optimum, pH 7–7.5), and in 0–8% NaCl (optimum, 2% for MEBiC13591T and 3% for MEBiC13594T). Strains MEBiC13591T and MEBiC13594T grew optimally at 50 °C, (37.5–56.1 °C) and 44 °C (20.7–50.7 °C), respectively. The main cellular fatty acids of strain MEBiC13591T were iso-C15: 0, anteiso-C15: 0, iso-C16: 0, iso-C17: 0 and anteiso-C17: 0, while those for strain MEBiC13594T were C14: 0, iso-C14: 0, iso-C15: 0, anteiso-C15: 0 and C16: 0. In both taxa, the major isoprenoid was MK-7. The genomic DNA G + C contents were 34.1 and 37.0 mol% for MEBiC13591T and MEBiC13594T, respectively. A 16S rRNA gene sequence analysis revealed that the novel strains showed high similarity with members of the genera Aeribacillus (95.0%) and Caldibacillus (93.5–94.5%); however, showed lower than 90% with Caldibacillus debilis TfT. Phylogenetic and Phylogenomic analysis revealed that two novel strains comprised distinct phyletic line with members formerly assigned to Caldibacillus. Based on genomic indices, such as AAI and ANI, members formerly affiliated with Caldibacillus and Bacillus as well as the novel strains should be classified into five independent genera. Based on the phenotypic, genomic and biochemical data, strains MEBiC13591T and MEBiC13594T represent two novel species in the novel genus, for which the names Fervidibacillus albus gen. nov., sp. nov. ( MEBiC13591T [= KCCM 43317T = KCTC 43181T = JCM 33662T = MCCC 1K04565T]), and Fervidibacillus halotolerans sp. nov. ( MEBiC13594T [= KCTC 43182T = JCM 34001T]) are proposed. Three additional genera Caldifermentibacillus, Palidibacillus, and Perspicuibacillus are also proposed by reclassification of the several species with valid names that formerly affiliated with the genera Caldibacillus.
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Citations
Citations to this article as recorded by
- An update on novel taxa and revised taxonomic status of bacteria isolated from domestic companion and agricultural animals described in 2023
Sara D. Lawhon, Claire R. Burbick, Trinity Krueger, Elena Ruiz-Reyes, Erik Munson, Romney M. Humphries
Journal of Clinical Microbiology.2024;[Epub] CrossRef - Congregibacter variabilis sp. nov. and Congregibacter brevis sp. nov. Within the OM60/NOR5 Clade, Isolated from Seawater, and Emended Description of the Genus Congregibacter
Hyeonsu Tak, Miri S. Park, Hyerim Cho, Yeonjung Lim, Jang-Cheon Cho
Journal of Microbiology.2024; 62(9): 739. CrossRef - Validation List no. 213. Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef
- An update on novel taxa and revised taxonomic status of bacteria isolated from domestic companion and agricultural animals described in 2023
Review
- COVID-19 vaccine development based on recombinant viral and bacterial vector systems: combinatorial effect of adaptive and trained immunity
- Mi-Hyun Lee , Bum-Joon Kim
- J. Microbiol. 2022;60(3):321-334. Published online February 14, 2022
- DOI: https://doi.org/10.1007/s12275-022-1621-2
- 62 View
- 0 Download
- 11 Web of Science
- 13 Crossref
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Abstract
- Severe acute respiratory syndrome coronavirus 2 virus (SARSCoV- 2) infection, which causes coronavirus disease 2019 (COVID-19), has led to many cases and deaths worldwide. Therefore, a number of vaccine candidates have been developed to control the COVID-19 pandemic. Of these, to date, 21 vaccines have received emergency approval for human use in at least one country. However, the recent global emergence of SARS-CoV-2 variants has compromised the efficacy of the currently available vaccines. To protect against these variants, the use of vaccines that modulate T cell-mediated immune responses or innate immune cell memory function, termed trained immunity, is needed. The major advantage of a vaccine that uses bacteria or viral systems for the delivery of COVID-19 antigens is the ability to induce both T cell-mediated and humoral immune responses. In addition, such vaccine systems can also exert off-target effects via the vector itself, mediated partly through trained immunity; compared to other vaccine platforms, suggesting that this approach can provide better protection against even vaccine escape variants. This review presents the current status of the development of COVID-19 vaccines based on recombinant viral and bacterial delivery systems. We also discuss the current status of the use of licensed live vaccines for other infections, including BCG, oral polio and MMR vaccines, to prevent COVID-19 infections.
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Citations
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Russian Journal of Genetics.2023; 59(9): 851. CrossRef - Coronavirus XBB.1.5 as an Indicator of the Long-Term Continuation of the Covid-19 pandemic. What Next for Vaccination?
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Vaccines.2023; 11(3): 539. CrossRef - Distinctive Combinations of RBD Mutations Contribute to Antibody Evasion in the Case of the SARS-CoV-2 Beta Variant
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Journal of Microbiology and Biotechnology.2023; 33(12): 1587. CrossRef - Leishmania tarentolae: a vaccine platform to target dendritic cells and a surrogate pathogen for next generation vaccine research in leishmaniases and viral infections
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I. V. Alekseenko, R. G. Vasilov, L. G. Kondratyeva, S. V. Kostrov, I. P. Chernov, E. D. Sverdlov
Генетика.2023; 59(9): 981. CrossRef - BNT162b2 COVID-19 vaccination in children alters cytokine responses to heterologous pathogens and Toll-like receptor agonists
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Frontiers in Immunology.2023;[Epub] CrossRef - The Natural Effect of BCG Vaccination on COVID-19: The Debate Continues
Wenping Gong, Huiru An, Jie Wang, Peng Cheng, Yong Qi
Frontiers in Immunology.2022;[Epub] CrossRef - Two years of COVID-19 pandemic: where are we now?
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Journal of Microbiology.2022; 60(3): 235. CrossRef
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Journal Articles
- Structure of bacterial and eukaryote communities reflect in situ controls on community assembly in a high-alpine lake
- Eli Michael S. Gendron , John L. Darcy , Katherinia Hell , Steven K. Schmidt
- J. Microbiol. 2019;57(10):852-864. Published online August 3, 2019
- DOI: https://doi.org/10.1007/s12275-019-8668-8
- 46 View
- 0 Download
- 11 Web of Science
- 11 Crossref
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Abstract
- Recent work suggests that microbial community composition in high-elevation lakes is significantly influenced by microbes entering from upstream terrestrial and aquatic habitats. To test this idea, we conducted 18S and 16S rDNA surveys of microbial communities in a high-alpine lake in the Colorado Rocky Mountains. We compared the microbial community of the lake to water entering the lake and to uphill soils that drain into the lake. Utilizing hydrological and abiotic data, we identified potential factors controlling microbial diversity and community composition. Results show a diverse community entering the lake at the inlet with a strong resemblance to uphill terrestrial and aquatic communities. In contrast, the lake communities (water column and outlet) showed significantly lower diversity and were significantly different from the inlet communities. Assumptions of neutral community assembly poorly predicted community differences between the inlet and lake, whereas “variable selection” and “dispersal limitation” were predicted to dominate. Similarly, the lake communities were correlated with discharge rate, indicating that longer hydraulic residence times limit dispersal, allowing selective pressures within the lake to structure communities. Sulfate and inorganic nitrogen and phosphorus concentrations correlated with community composition, indicating “bottom up” controls on lake community assembly. Furthermore, bacterial community composition was correlated with both zooplankton density and eukaryotic community composition, indicating biotic controls such as “top-down” interactions also contribute to community assembly in the lake. Taken together, these community analyses suggest that deterministic biotic and abiotic selection within the lake coupled with dispersal limitation structures the microbial communities in Green Lake 4.
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Citations
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Gu Rao, Wen-Long Song, Shu-Zhen Yan, Shuang-Lin Chen, John R. Spear
Applied and Environmental Microbiology.2024;[Epub] CrossRef - The nature of microbial diversity and assembly in the Nebraska Sandhills depends on organismal identity and habitat type
Kaitlin Gattoni, Eli M. S. Gendron, J. Parr McQueen, Kirsten Powers, Thomas O. Powers, Mary J. Harner, Jessica R. Corman, Dorota L. Porazinska
Community Ecology.2024;[Epub] CrossRef - Lakes-scale pattern of eukaryotic phytoplankton diversity and assembly process shaped by electrical conductivity in central Qinghai-Tibet Plateau
Huan Zhu, Xiong Xiong, Benwen Liu, Guoxiang Liu
FEMS Microbiology Ecology.2024;[Epub] CrossRef - Free-Living and Particle-Associated Microbial Communities of Lake Baikal Differ by Season and Nutrient Intake
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Applied Soil Ecology.2023; 191: 105060. CrossRef - Sediment sulfate content determines assembly processes and network stability of bacteria communities of coastal land-based shrimp aquaculture ponds
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Denis V. Tikhonenkov, Kirill V. Mikhailov, Ryan M. R. Gawryluk, Artem O. Belyaev, Varsha Mathur, Sergey A. Karpov, Dmitry G. Zagumyonnyi, Anastasia S. Borodina, Kristina I. Prokina, Alexander P. Mylnikov, Vladimir V. Aleoshin, Patrick J. Keeling
Nature.2022; 612(7941): 714. CrossRef - Crossing Treeline: Bacterioplankton Communities of Alpine and Subalpine Rocky Mountain Lakes
Kim Vincent, Hannah Holland-Moritz, Adam J. Solon, Eli M. S. Gendron, Steven K. Schmidt
Frontiers in Microbiology.2022;[Epub] CrossRef - Community Assembly and Co-occurrence Patterns Underlying the Core and Satellite Bacterial Sub-communities in the Tibetan Lakes
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Javad Sadeghi, Subba Rao Chaganti, Abdolrazagh Hashemi Shahraki, Daniel D. Heath
Science of The Total Environment.2021; 781: 146771. CrossRef - Evidence for phosphorus limitation in high-elevation unvegetated soils, Niwot Ridge, Colorado
Clifton P. Bueno de Mesquita, Laurel M. Brigham, Pacifica Sommers, Dorota L. Porazinska, Emily C. Farrer, John L. Darcy, Katharine N. Suding, Steven K. Schmidt
Biogeochemistry.2020; 147(1): 1. CrossRef
- Unraveling the distribution pattern and driving forces of soil microorganisms under geographic barriers
- Co-occurrence patterns between phytoplankton and bacterioplankton across the pelagic zone of Lake Baikal during spring
- Ivan S. Mikhailov , Yuri S. Bukin , Yulia R. Zakharova , Marina V. Usoltseva , Yuri P. Galachyants , Maria V. Sakirko , Vadim V. Blinov , Yelena V. Likhoshway
- J. Microbiol. 2019;57(4):252-262. Published online March 30, 2019
- DOI: https://doi.org/10.1007/s12275-019-8531-y
- 52 View
- 0 Download
- 19 Web of Science
- 16 Crossref
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Abstract
- Phytoplankton and bacterioplankton play a key role in carbon cycling of aquatic ecosystems. In this study, we found that co-occurrence patterns between different types of phytoplankton, bacterioplankton, and environmental parameters in Lake Baikal during spring were different over the course of three consecutive years. The composition of phytoplankton and bacterial communities was investigated using microscopy and 16S rRNA gene pyrosequencing, respectively. Non-metric multidimensional scaling (NMDS) revealed a relationship between the structure of phytoplankton and bacterial communities and temperature, location, and sampling year. Associations of bacteria with diatoms, green microalgae, chrysophyte, and cryptophyte were identified using microscopy. Cluster analysis revealed similar correlation patterns between phytoplankton abundance, number of attached bacteria, ratio of bacteria per phytoplankton cell and environmental parameters. Positive and negative correlations between different species of phytoplankton, heterotrophic bacteria and environmental parameters may indicate mutualistic or competitive relationships between microorganisms and their preferences to the environment.
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Citations
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Yu. S. Bukin, N. A. Bondarenko, I. I. Rusanov, N. V. Pimenov, S. V. Bukin, T. V. Pogodaeva, S. M. Chernitsyna, O. V. Shubenkova, V. G. Ivanov, A. S. Zakharenko, T. I. Zemskaya
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