Journal of Microbiology

Review

MINIREVIEW] On the study of microbial transcriptomes using second- and third-generation sequencing technologies: Sang Chul Choi; J. Microbiol. 2016;54(8):527-536. Published online August 2, 2016; DOI: https://doi.org/10.1007/s12275-016-6233-2

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Second-generation sequencing technologies transformed the study of microbial transcriptomes. They helped reveal the transcription start sites and antisense transcripts of microbial species, improving the microbial genome annotation. Quantification of genome-wide gene expression levels allowed for functional studies of microbial research. Ever-evolving sequencing technologies are reshaping approaches to studying microbial transcriptomes. Recently, Oxford Nanopore Technologies delivered a sequencing platform called MinION, a third-generation sequencing technology, to the research community. We expect it to be the next sequencing technology that enables breakthroughs in life science fields. The studies of microbial transcriptomes will be no exception. In this paper, we review microbial transcriptomics studies using second- generation sequencing technology. We also discuss the prospect of microbial transcriptomics studies with thirdgeneration sequencing.

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Yan Zhuang, Yiyan Lin, Hongxia Sun, Zaiting Zhang, Tao Wang, Rongjun Fan, Lu Han
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Yunqi Huang, Yutong Lu, Cailing Song, Yican Wei, Yuxi Yang, Jie Ren, Meiling Wang, Congli Tang, Aayesha Riaz, Muhammad Ali Shah, Yan Deng, Hongna Liu, Wenjing Pan, Song Li
Journal of Nanoelectronics and Optoelectronics.2023; 18(4): 381. CrossRef
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Chongchong Yan, Nan Zhang, Qianqian Wang, Yuying Fu, Hongyuan Zhao, Jiajia Wang, Gang Wu, Feng Wang, Xueyan Li, Huajun Liao
BMC Plant Biology.2022;[Epub] CrossRef
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Kunpeng Shi, Jitao Li, Jianjian Lv, Ping Liu, Jian Li, Sedong Li
Science of The Total Environment.2020; 747: 141238. CrossRef
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Ao Li, Ai Liu, Xin Du, Jin-Yuan Chen, Mou Yin, Hong-Yin Hu, Nawal Shrestha, Sheng-Dan Wu, Hai-Qing Wang, Quan-Wen Dou, Zhi-Peng Liu, Jian-Quan Liu, Yong-Zhi Yang, Guang-Peng Ren
Horticulture Research.2020;[Epub] CrossRef
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Buket Baddal
Pathogens and Disease.2019;[Epub] CrossRef
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S.P. Radko, L.K. Kurbatov, K.G. Ptitsyn, Y.Y. Kiseleva, E.A. Ponomarenko, A.V. Lisitsa, A.I. Archakov
Biomedical Chemistry: Research and Methods.2018; 1(4): e00086. CrossRef
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Thomas Wolf, Philipp Kämmer, Sascha Brunke, Jörg Linde
Current Opinion in Microbiology.2018; 42: 7. CrossRef
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Journal Article

Effect of pH on Conjugated Linoleic Acid (CLA) Formation of Linolenic Acid Biohydrogenation by Ruminal Microorganisms: Yongjae Lee; J. Microbiol. 2013;51(4):471-476. Published online August 30, 2013; DOI: https://doi.org/10.1007/s12275-013-1070-z

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Abstract

Conventional beliefs surrounding the linolenic acid (LNA; cis-9 cis-12 cis-15 C18:3) biohydrogenation (BH) pathway propose that it converts to stearic acid (SA) without the formation of conjugated linoleic acid (CLA) as intermediate isomers. However, an advanced study (Lee and Jenkins, 2011) verified that LNA BH yields multiple CLAs. This study utilized the stable isotope tracer to investigate the BH intermediates of 13C-LNA with different pH conditions (5.5 and 6.5). The 13C enrichment was calculated as a 13C/12C ratio of labeled minus unlabeled. After 24 h, eight CLA isomers were significantly enriched on both pH treatment, this result verifies that these CLAs originated from 13C-LNA BH which supports the results of Lee and Jenkins (2011). The enrichment of cis-cis double bond CLAs (cis-9 cis-11 and cis-10 cis-12 CLA) were significantly higher at low pH conditions. Furthermore, the concentration of cis-10 cis-12 CLA at low pH was four times higher than at high pH conditions after a 3 h incubation. These differences support the LNA BH pathways partial switch under different pH conditions, with a strong influence on the cis-cis CLA at low pH. Several mono-, di-, and tri-enoic fatty acid isomers were enriched during 24 h of incubation, but the enrichment was decreased or restricted at low pH treatment. Based on these results, it is proposed that low pH conditions may cause a changed or limited capacity of the isomerization and reduction steps in BH.

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Invited review: Research on ruminal biohydrogenation—Achievements, gaps in knowledge, and future approaches from the perspective of dairy science
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Selenate and selenite affect ruminal metabolism of C18 unsaturated fatty acids and fatty acid composition of lamb tissues
Małgorzata Białek, Marian Czauderna, Wiesław Przybylski, Danuta Jaworska
Livestock Science.2020; 241: 104249. CrossRef
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Atique A. Behan, Teck Chwen Loh, Sharida Fakurazi, Ubedullah Kaka, Asmatullah Kaka, Anjas Asmara Samsudin
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In vitro biohydrogenation of 13C-labeled α-linolenic acid in response to ruminal alterations associated with diet-induced milk fat depression in ewes
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Accumulation of conjugated linoleic acid in Lactobacillus plantarum WU-P19 is enhanced by induction with linoleic acid and chitosan treatment
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The In vitro Effects of Nano-encapsulated Conjugated Linoleic Acid on Stability of Conjugated Linoleic Acid and Fermentation Profiles in the Rumen
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Sources and Bioactive Properties of Conjugated Dietary Fatty Acids
Alan A. Hennessy, Paul R. Ross, Gerald F. Fitzgerald, Catherine Stanton
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Influence of Carotino oil on in vitro rumen fermentation, metabolism and apparent biohydrogenation of fatty acids
Kazeem Dauda Adeyemi, Mahdi Ebrahimi, Anjas Asmara Samsudin, Abd Razak Alimon, Roselina Karim, Saiful Anuar Karsani, Awis Qurni Sazili
Animal Science Journal.2015; 86(3): 270. CrossRef
Seleno‐methionine decreases biohydrogenation of C18 unsaturated fatty acids in ovine ruminal fluid incubated in vitro with α‐linolenic acid
Marian Czauderna, Agnieszka J. Rozbicka‐Wieczorek, Edyta Więsyk, Katarzyna A. Krajewska‐Bienias
European Journal of Lipid Science and Technology.2015; 117(6): 820. CrossRef

Research Support, U.S. Gov't, Non-P.H.S.

Identification of Enriched Conjugated Linoleic Acid Isomers in Cultures of Ruminal Microorganisms after Dosing with 1-13C-Linoleic Acid: Yong-Jae Lee , Thomas C. Jenkins; J. Microbiol. 2011;49(4):622-627. Published online September 2, 2011; DOI: https://doi.org/10.1007/s12275-011-0415-8

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Abstract: Most studies of linoleic acid biohydrogenation propose that it converts to stearic acid through the production of cis-9 trans-11 CLA and trans-11 C18:1. However, several other CLA have been identified in ruminal contents, suggesting additional pathways may exist. To explore this possibility, this research investigated the linoleic acid biohydrogenation pathway to identify CLA isomers in cultures of ruminal microorganisms after dosing with a 13C stable isotope. The 13C enrichment was calculated as [(M+1/M)×100] in labeled minus unlabeled cultures. After 48 h incubation, significant 13C enrichment was observed in seven CLA isomers, indicating their formation from linoleic acid. All enriched CLA isomers had double bonds in either the 9,11 or 10,12 position except for trans-9 cis-11 CLA. The cis-9 trans-11 CLA exhibited the highest enrichment (30.65%), followed by enrichments from 21.06 to 23.08% for trans-10 cis-12, cis-10 trans-12, trans-9 trans-11, and trans-10 trans-12 CLA. The remaining two CLA (cis-9 cis-11 and cis-10 cis-12 CLA) exhibited enrichments of 18.38 and 19.29%, respectively. The results of this study verified the formation of cis-9 trans-11 and trans-10 cis-12 CLA isomers from linoleic acid biohydrogenation. An additional five CLA isomers also contained carbons originating from linoleic acid, indicating that pathways of linoleic acid biohydrogenation are more complex than previously described.

Research Support, Non-U.S. Gov'ts

Diversity of Cold-Active Protease-Producing Bacteria from Arctic Terrestrial and Marine Environments Revealed by Enrichment Culture: Eun Hye Kim , Kyeung Hee Cho , Yung Mi Lee , Joung Han Yim , Hong Kum Lee , Jang-Cheon Cho , Soon Gyu Hong; J. Microbiol. 2010;48(4):426-432. Published online August 20, 2010; DOI: https://doi.org/10.1007/s12275-010-0015-z

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Abstract

A new approach for enrichment culture was applied to obtain cold-active protease-producing bacteria for marine and terrestrial samples from Svalbard, Norway. The method was developed for the enrichment of bacteria by long-term incubation at low temperatures in semi-solid agar medium containing meat pieces as the main source of carbon and energy. ZoBell and 0.1× nutrient broth were added for marine and terrestrial microorganisms, respectively, to supply basal elements for growth. One to three types of colonies were observed from each enrichment culture, indicating that specific bacterial species were enriched during the experimental conditions. Among 89 bacterial isolates, protease activity was observed from 48 isolates in the screening media containing skim milk. Good growth was observed at 4°C and 10°C while none of the isolates could grow at 37°C. At low temperatures, enzyme activity was equal to or higher than activity at higher temperatures. Bacterial isolates were included in the genera Pseudoalteromonas (33 isolates), Arthrobacter (24 isolates), Pseudomonas (16 isolates), Psychrobacter (6 isolates), Sphingobacterium (6 isolates), Flavobacterium (2 isolates), Sporosarcina (1 isolate), and Stenotrophomonas (1 isolate). Protease activity was observed from Pseudoalteromonas (33 isolates), Pseudomonas (10 isolates), Arthrobacter (4 isolates), and Flavobacterium (1 isolate).

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BMC Genomics.2017;[Epub] CrossRef
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Preparative Biochemistry & Biotechnology.2016; 46(4): 328. CrossRef
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Journal of Basic Microbiology.2015; 55(3): 354. CrossRef
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FEMS Microbiology Ecology.2014; 89(2): 211. CrossRef
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Food Chemistry.2014; 165: 205. CrossRef
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Andy Canion, Om Prakash, Stefan J. Green, Linda Jahnke, Marcel M. M. Kuypers, Joel E. Kostka
Environmental Microbiology.2013; 15(5): 1606. CrossRef
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Aquaculture Nutrition.2012; 18(4): 423. CrossRef
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Yung Mi Lee, GoHeung Kim, You-Jung Jung, Cheng-Dae Choe, Joung Han Yim, Hong Kum Lee, Soon Gyu Hong
Polar Biology.2012; 35(9): 1433. CrossRef
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Domenico Pangallo, Lucia Kraková, Katarína Chovanová, Alexandra Šimonovičová, Filomena De Leo, Clara Urzì
World Journal of Microbiology and Biotechnology.2012; 28(5): 2015. CrossRef

Endophytic Bacterial Diversity in Grapevine (Vitis vinifera L.) Leaves Described by 16S rRNA Gene Sequence Analysis and Length Heterogeneity-PCR: Daniela Bulgari , Paola Casati , Lorenzo Brusetti , Fabio Quaglino , Milena Brasca , Daniele Daffonchio , Piero Attilio Bianco; J. Microbiol. 2009;47(4):393-401. Published online September 9, 2009; DOI: https://doi.org/10.1007/s12275-009-0082-1

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Abstract

Diversity of bacterial endophytes associated with grapevine leaf tissues was analyzed by cultivation and cultivation-independent methods. In order to identify bacterial endophytes directly from metagenome, a protocol for bacteria enrichment and DNA extraction was optimized. Sequence analysis of 16S rRNA gene libraries underscored five diverse Operational Taxonomic Units (OTUs), showing best sequence matches with gamma-Proteobacteria, family Enterobacteriaceae, with a dominance of the genus Pantoea. Bacteria isolation through cultivation revealed the presence of six OTUs, showing best sequence matches with Actinobacteria, genus Curtobacterium, and with Firmicutes genera Bacillus and Enterococcus. Length Heterogeneity-PCR (LH-PCR) electrophoretic peaks from single bacterial clones were used to setup a database representing the bacterial endophytes identified in association with grapevine tissues. Analysis of healthy and phytoplasma- infected grapevine plants showed that LH-PCR could be a useful complementary tool for examining the diversity of bacterial endophytes especially for diversity survey on a large number of samples.

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PLOS ONE.2017; 12(9): e0184615. CrossRef
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P. Morales-Lizcano Nadia, Hasan Ahmed, S. To Henry, T. Lekadou Tacra, Copeland Julia, Wang Pauline, A. Diallo Hortense, L. Konan Konan Jean, Yoshioka Keiko, Moeder Wolfgang, Scott James, Arocha Rosete Yaima
African Journal of Biotechnology.2017; 16(27): 1534. CrossRef
Identification and Characterizations of Potential Indigenous Endophytic Bacteria which Had Ability to Promote Growth Rate of Tomato and Biocontrol Agents of Ralstonia solanacearum and Fusarium oxysporum fsp. solani
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Microbiology Indonesia.2017; 11(4): 117. CrossRef
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Alessandro Passera, Giovanni Venturini, Giovanna Battelli, Paola Casati, Francesca Penaca, Fabio Quaglino, Piero Attilio Bianco
Microbiological Research.2017; 198: 16. CrossRef
Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium
Alexander B. Chase, Philip Arevalo, Martin F. Polz, Renaud Berlemont, Jennifer B. H. Martiny
Frontiers in Microbiology.2016;[Epub] CrossRef
Leaf Treatments with a Protein-Based Resistance Inducer Partially Modify Phyllosphere Microbial Communities of Grapevine
Martina Cappelletti, Michele Perazzolli, Livio Antonielli, Andrea Nesler, Esmeralda Torboli, Pier L. Bianchedi, Massimo Pindo, Gerardo Puopolo, Ilaria Pertot
Frontiers in Plant Science.2016;[Epub] CrossRef
Bacterial diversity of Grenache and Carignan grape surface from different vineyards at Priorat wine region (Catalonia, Spain)
Maria del Carmen Portillo, Judit Franquès, Isabel Araque, Cristina Reguant, Albert Bordons
International Journal of Food Microbiology.2016; 219: 56. CrossRef
Diversity of bacterial endophytes in 3 and 15 year-old grapevines of Vitis vinifera cv. Corvina and their potential for plant growth promotion and phytopathogen control
Marco Andreolli, Silvia Lampis, Giacomo Zapparoli, Elisa Angelini, Giovanni Vallini
Microbiological Research.2016; 183: 42. CrossRef
Vitis vinifera microbiome: from basic research to technological development
Cátia Pinto, Ana Catarina Gomes
BioControl.2016; 61(3): 243. CrossRef
Endophytic bacteria with antagonistic traits inhabit the wood tissues of grapevines from Tunisian vineyards
A. Rezgui, A. Ben Ghnaya-Chakroun, J. Vallance, E. Bruez, M.R. Hajlaoui, N. Sadfi-Zouaoui, P. Rey
Biological Control.2016; 99: 28. CrossRef
Development and evaluation of different complex media for phytoplasma isolation and growth
N. Contaldo, E. Satta, Y. Zambon, S. Paltrinieri, A. Bertaccini
Journal of Microbiological Methods.2016; 127: 105. CrossRef
Whole-Metagenome-Sequencing-Based Community Profiles of Vitis vinifera L. cv. Corvina Berries Withered in Two Post-harvest Conditions
Elisa Salvetti, Stefano Campanaro, Ilenia Campedelli, Fabio Fracchetti, Alex Gobbi, Giovanni Battista Tornielli, Sandra Torriani, Giovanna E. Felis
Frontiers in Microbiology.2016;[Epub] CrossRef
Beneficial Bacteria Isolated from Grapevine Inner Tissues Shape Arabidopsis thaliana Roots
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PLOS ONE.2015; 10(10): e0140252. CrossRef
Pyrosequencing detects human and animal pathogenic taxa in the grapevine endosphere
Sohail Yousaf, Daniela Bulgari, Alessandro Bergna, Michael Pancher, Fabio Quaglino, Paola Casati, Andrea Campisano
Frontiers in Microbiology.2014;[Epub] CrossRef
Curtobacterium sp. Genome Sequencing Underlines Plant Growth Promotion-Related Traits
Daniela Bulgari, Andrea Minio, Paola Casati, Fabio Quaglino, Massimo Delledonne, Piero A. Bianco
Genome Announcements.2014;[Epub] CrossRef
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Daniela Bulgari, Paola Casati, Fabio Quaglino, Piero A Bianco
BMC Microbiology.2014;[Epub] CrossRef
Bacterial Endophytic Communities in the Grapevine Depend on Pest Management
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PLoS ONE.2014; 9(11): e112763. CrossRef
Plant Growth Promotion Potential Is Equally Represented in Diverse Grapevine Root-Associated Bacterial Communities from Different Biopedoclimatic Environments
Ramona Marasco, Eleonora Rolli, Marco Fusi, Ameur Cherif, Ayman Abou-Hadid, Usama El-Bahairy, Sara Borin, Claudia Sorlini, Daniele Daffonchio
BioMed Research International.2013; 2013: 1. CrossRef
Characterization of Epiphytic Bacterial Communities from Grapes, Leaves, Bark and Soil of Grapevine Plants Grown, and Their Relations
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PLoS ONE.2013; 8(8): e73013. CrossRef
Current molecular biologic techniques for characterizing environmental microbial community
Dawen Gao, Yu Tao
Frontiers of Environmental Science & Engineering.2012; 6(1): 82. CrossRef
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Environmental Microbiology Reports.2012; 4(5): 522. CrossRef
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BMC Microbiology.2012;[Epub] CrossRef
Isolation, selection and characterization of root-associated growth promoting bacteria in Brazil Pine (Araucaria angustifolia)
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Microbiological Research.2012; 167(2): 69. CrossRef
Endophytic bacterial community living in roots of healthy and ‘Candidatus Phytoplasma mali’-infected apple (Malus domestica, Borkh.) trees
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Antonie van Leeuwenhoek.2012; 102(4): 677. CrossRef
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Applied and Environmental Microbiology.2012; 78(12): 4308. CrossRef
Endophytes of Grapevine Flowers, Berries, and Seeds: Identification of Cultivable Bacteria, Comparison with Other Plant Parts, and Visualization of Niches of Colonization
Stéphane Compant, Birgit Mitter, Juan Gualberto Colli-Mull, Helmut Gangl, Angela Sessitsch
Microbial Ecology.2011; 62(1): 188. CrossRef
Culture-independent detection of microorganisms in traditional Slovakian bryndza cheese
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International Journal of Food Microbiology.2011; 150(1): 73. CrossRef
Metagenomic analysis of the 1-aminocyclopropane-1-carboxylate deaminase gene (acdS) operon of an uncultured bacterial endophyte colonizing Solanum tuberosum L
Branislav Nikolic, Helmut Schwab, Angela Sessitsch
Archives of Microbiology.2011; 193(9): 665. CrossRef
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Applied Microbiology and Biotechnology.2011; 89(3): 457. CrossRef
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Journal of Microbiological Methods.2011; 87(2): 220. CrossRef
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Applied and Environmental Microbiology.2011; 77(14): 5018. CrossRef
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Genetics and Molecular Research.2010; 9(4): 2372. CrossRef

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