Journal of Microbiology

Journal Articles

Microbial metabolic responses and CO2 emissions differentiated by soil water content variation in subarctic tundra soils: Dockyu Kim , Namyi Chae , Mincheol Kim , Sungjin Nam , Tai Kyoung Kim , Ki-Tea Park , Bang Yong Lee , Eungbin Kim , Hyoungseok Lee; J. Microbiol. 2022;60(12):1130-1138. Published online November 24, 2022; DOI: https://doi.org/10.1007/s12275-022-2378-3

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Recent rapid air temperature increases across the northernlatitude tundra have prolonged permafrost thawing and snow melting periods, resulting in increased soil temperature (Ts) and volumetric soil water content (SWC). Under prolonged soil warming at 8°C, Alaskan tundra soils were incubated in a microcosm system and examined for the SWC differential influence on the microbial decomposition activity of large molecular weight (MW) humic substances (HS). When one microcosm soil (AKC1-1) was incubated at a constant SWC of 41% for 90 days (T = 90) and then SWC was gradually decreased from 41% to 29% for another T = 90, the initial HS was partly depolymerized. In contrast, in AKC1-2 incubated at a gradually decreasing SWC from the initial 32% to 10% for T = 90 and then increasing to 27% for another T = 90, HS depolymerization was undetected. Overall, the microbial communities in AKC1-1 could maintain metabolic activity at sufficient and constant SWC during the initial T = 90 incubation. In contrast, AKC1-2 microbes may have been damaged by drought stress during the drying SWC regimen, possibly resulting in the loss of HS decomposition activity, which did not recover even after re-wetting to an optimal SWC range (20–40%). After T = 90, the CO2 production in both treatments was attributed to the increased decomposition of small-MW organic compounds (including aerobic HS-degradative products) within an optimal SWC range. We expect this study to provide new insights into the early effects of warming- and topography-induced SWC variations on the microbial contribution to CO2 emissions via HS decomposition in northern-latitude tundra soil.

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Unidirectional freeze–thaw redistributes water and amplifies soil microbial heterogeneity in a mecrocosm experiment
Huimin Liu, Yaxian Hu, Yuan Song, Xianwen Li, Xiaorong Wei
Geoderma.2025; 453: 117126. CrossRef
Analysis of CO2 Emission from Urban Soils of the Kola Peninsula (European Arctic)
M. V. Korneykova, V. I. Vasenev, N. V. Saltan, M. V. Slukovskaya, A. S. Soshina, M. S. Zavodskikh, Yu. L. Sotnikova, A. V. Dolgikh
Eurasian Soil Science.2023; 56(11): 1653. CrossRef
Analysis of CO₂ Emission by Urban Soils under the Conditions of the Kola North
M. V. Korneykova, V. I. Vasenev, N. V. Saltan, M. V. Slukovskaya, A. S. Soshina, M. S. Zavodskikh, Y. L. Sotnikova, A. V. Dolgikh
Почвоведение.2023; (11): 1385. CrossRef

Characterization of a Salmonella Enteritidis bacteriophage showing broad lytic activity against Gram-negative enteric bacteria: Shukho Kim , Sung-Hun Kim , Marzia Rahman , Jungmin Kim; J. Microbiol. 2018;56(12):917-925. Published online October 25, 2018; DOI: https://doi.org/10.1007/s12275-018-8310-1

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In this study, we sought to isolate Salmonella Enteritidis-specific lytic bacteriophages (phages), and we found a lytic phage that could lyse not only S. Enteritidis but also other Gramnegative foodborne pathogens. This lytic phage, SS3e, could lyse almost all tested Salmonella enterica serovars as well as other enteric pathogenic bacteria including Escherichia coli, Shigella sonnei, Enterobacter cloacae, and Serratia marcescens. This SS3e phage has an icosahedral head and a long tail, indicating belong to the Siphoviridae. The genome was 40,793 base pairs, containing 58 theoretically determined open reading frames (ORFs). Among the 58 ORFs, ORF49, and ORF25 showed high sequence similarity with tail spike protein and lysozyme-like protein of Salmonella phage SE2, respectively, which are critical proteins recognizing and lysing host bacteria. Unlike SE2 phage whose host restricted to Salmonella enterica serovars Enteritidis and Gallinarum, SS3e showed broader host specificity against Gram-negative enteric bacteria; thus, it could be a promising candidate for the phage utilization against various Gram-negative bacterial infection including foodborne pathogens.

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