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Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity
Dongwook Kim , Sein Park , Jongsik Chun
J. Microbiol. 2021;59(5):476-480.   Published online April 28, 2021
DOI: https://doi.org/10.1007/s12275-021-1154-0
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AbstractAbstract
The average amino acid identity (AAI) is an index of pairwise genomic relatedness, and multiple studies have proposed its application in prokaryotic taxonomy and related disciplines. AAI demonstrates better resolution in elucidating taxonomic structure beyond the species rank when compared with average nucleotide identity (ANI), which is a standard criterion in species delineation. However, an efficient and easy-to-use computational tool for AAI calculation in large-scale taxonomic studies is not yet available. Here, we introduce a bioinformatic pipeline, named EzAAI, which allows for rapid and accurate AAI calculation in prokaryote sequences. The EzAAI tool is based on the MMSeqs2 program and computes AAI values almost identical to those generated by the standard BLAST algorithm with significant improvements in the speed of these evaluations. Our pipeline also provides a function for hierarchical clustering to create dendrograms, which is an essential part of any taxonomic study. EzAAI is available for download as a standalone JAVA program at http:// leb.snu.ac.kr/ezaai.

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    Archives of Microbiology.2024;[Epub]     CrossRef
  • Specific amino acid changes correlate with pathogenic flavobacteria
    Vincent Gélinas, Valérie E. Paquet, Maude F. Paquet, Steve J. Charette, Antony T. Vincent
    Genome.2024; 67(10): 368.     CrossRef
  • Aurantiacibacter flavus sp. nov. and Aurantiacibacter gilvus sp. nov., isolated from the mudflat of Suaeda japonica colonies
    Sunho Park, Inhyup Kim, Haejin Woo, Hyunji Lee, Subin Yook, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Splendidivirga corallicola gen. nov., sp. nov. and Agaribacillus aureus gen. nov., sp. nov., two bacteria isolated from coral Porites lutea, and proposal of Splendidivirgaceae fam. nov.
    Jin Li, Jixin Luo, Mi Li, Chenyan Wang, Siyu Hu, Kun Lu, Guanghua Wang
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • The Genome of a New Halorubrum distributum Strain ICIS4 Isolated from the Culture of a Microalga Dunaliella salina
    E. A. Selivanova, A. S. Balkin, Yu. A. Khlopko, V. Ya. Kataev, A. O. Plotnikov
    Microbiology.2024; 93(4): 482.     CrossRef
  • Peteryoungia algae sp. nov. isolated from seaweeds of Gouqi Island, China, and its unique genetic features among Peteryoungia strains
    Jun Yin, Min He, Xiao-Xiao Liu, Chang-Bin Ren, Hou-Hong Liu, Hai Luo, Gen Chen, Ze-Fei Wang, Sanjit Chandra Debnath, Pin-Mei Wang, Hai-Xin Chen, Dao-Qiong Zheng
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • Methylomonas rivi sp. nov., Methylomonas rosea sp. nov., Methylomonas aurea sp. nov. and Methylomonas subterranea sp. nov., type I methane-oxidizing bacteria isolated from a freshwater creek and the deep terrestrial subsurface
    Christopher A. Abin, Christopher T. Garner, Krithivasan Sankaranarayanan, Reid A. Sindelar, Kyrah F. Kotary, Rosa M. Garner, Samantha C. Barclay, Haiyuan Cai, Paul A. Lawson, Lee R. Krumholz
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Phylogenomic discernments into Anaerolineaceae thermal adaptations and the proposal of a candidate genus Mesolinea
    Katherine Bedoya-Urrego, Juan F. Alzate
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Unraveling the genomic secrets of Tritonibacter mobilis AK171: a plant growth-promoting bacterium isolated from Avicennia marina
    Amal Khalaf Alghamdi, Sabiha Parween, Heribert Hirt, Maged M. Saad
    BMC Genomics.2024;[Epub]     CrossRef
  • Ochrobactrum chromiisoli sp. nov., Isolated from Chromium-Contaminated Soil
    Yi Yang, Zhe Xu, Li Yang, Meng-yao Hu, Guang-yang Jiang, Jia Chen, Yi-chen Yang, Yongqiang Tian
    Current Microbiology.2024;[Epub]     CrossRef
  • Spartinivicinus poritis sp. nov., a red pigment-producing bacterium isolated from a scleractinian coral Porites lutea
    Sumbal Sajid, Guoqiang Zhang, Zongyao Zhang, Yishan Lu, Lianguo Chen, Lin Cai
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Tardiphaga alba sp. nov., a heavy-metal-tolerant bacterium isolated from garden soil
    Zhihua Bao, Chaojun Wang, Jiahui Cao, Tingting Zhang, Yong Guo, Yoshinori Sato, Tomoyasu Nishizawa, Hiroyuki Ohta
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Novel order-level lineage of ammonia-oxidizing archaea widespread in marine and terrestrial environments
    Yue Zheng, Baozhan Wang, Ping Gao, Yiyan Yang, Bu Xu, Xiaoquan Su, Daliang Ning, Qing Tao, Qian Li, Feng Zhao, Dazhi Wang, Yao Zhang, Meng Li, Mari-K H Winkler, Anitra E Ingalls, Jizhong Zhou, Chuanlun Zhang, David A Stahl, Jiandong Jiang, Willm Martens-H
    The ISME Journal.2024;[Epub]     CrossRef
  • Refining the taxonomy of the order Hyphomicrobiales (Rhizobiales) based on whole genome comparisons of over 130 type strains
    George C. diCenzo, Yuqi Yang, J. Peter W. Young, Nemanja Kuzmanović
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Luteimonas flava sp. nov. and Aquilutibacter rugosus gen. nov., sp. nov., isolated from freshwater environments in China and re-examining the taxonomic status of genera Luteimonas and Lysobacter
    Huibin Lu, Li Chen, Yujing Wang, Peng Xing, Qinglong Wu
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Novel taxonomic and functional diversity of eight bacteria from the upper digestive tract of chicken
    Bibiana Rios-Galicia, Johan S. Sáenz, Timur Yergaliyev, Christoph Roth, Amélia Camarinha-Silva, Jana Seifert
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Parendozoicomonas callyspongiae sp. nov. Isolated from a Marine Sponge, Callyspongia elongate, and Reclassification of Sansalvadorimonas verongulae as Parendozoicomonas verongulae comb. nov.
    Soo-Bin Kim, Kyung Hyun Kim, Jin-Sook Park
    Current Microbiology.2024;[Epub]     CrossRef
  • Novel phage infecting the Roseobacter CHUG lineage reveals a diverse and globally distributed phage family
    Zuqing Wu, Luyuan Guo, Ying Wu, Mingyu Yang, Sen Du, Jiabing Shao, Zefeng Zhang, Yanlin Zhao, Michael J. Imperiale
    mSphere.2024;[Epub]     CrossRef
  • Biochip-Based Identification of Mycobacterial Species in Russia
    Danila Zimenkov, Vyacheslav Zhuravlev, Anastasia Ushtanit, Marina Filippova, Uliana Semenova, Natalia Solovieva, Maria Sviridenko, Anastasia Khakhalina, Svetlana Safonova, Marina Makarova, Elizaveta Gordeeva, Elena Guselnikova, Yakov Schwartz, Natalia Sta
    International Journal of Molecular Sciences.2024; 25(23): 13200.     CrossRef
  • Leptothrix ochracea genomes reveal potential for mixotrophic growth on Fe(II) and organic carbon
    Gracee K. Tothero, Rene L. Hoover, Ibrahim F. Farag, Daniel I. Kaplan, Pamela Weisenhorn, David Emerson, Clara S. Chan, Arpita Bose
    Applied and Environmental Microbiology.2024;[Epub]     CrossRef
  • Svornostia abyssi gen. nov., sp. nov. isolated from the world’s deepest silver–uranium mine currently devoted to the extraction of radon-saturated water
    Gabriela Kapinusova, Jachym Suman, Michal Strejcek, Petr Pajer, Tomas Cajthaml, Pavel Ulbrich, Meina Neumann-Schaal, Ondrej Uhlik
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Genomic analysis of the class Phycisphaerae reveals a versatile group of complex carbon-degrading bacteria
    Wouter B. Lenferink, Theo A. van Alen, Mike S. M. Jetten, Huub J. M. Op den Camp, Maartje A. H. J. van Kessel, Sebastian Lücker
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • Genome streamlining in Parcubacteria transitioning from soil to groundwater
    Narendrakumar M. Chaudhari, Olga M. Pérez-Carrascal, Will A. Overholt, Kai U. Totsche, Kirsten Küsel
    Environmental Microbiome.2024;[Epub]     CrossRef
  • Sulfurospirillum diekertiae sp. nov., a tetrachloroethene-respiring bacterium isolated from contaminated soil
    Huijuan Jin, Leitao Huo, Yi Yang, Yan Lv, Jingjing Wang, Julien Maillard, Christof Holliger, Frank E. Löffler, Jun Yan
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Description of Pseudocalidococcus azoricus gen. sp. nov. (Thermosynechococcaceae, Cyanobacteria), a Rare but Widely Distributed Coccoid Cyanobacteria
    Rúben Luz, Rita Cordeiro, Jan Kaštovský, Amélia Fonseca, Ralph Urbatzka, Vitor Vasconcelos, Vítor Gonçalves
    Diversity.2023; 15(12): 1157.     CrossRef
  • The identification of the new species Nitratireductor thuwali sp. nov. reveals the untapped diversity of hydrocarbon-degrading culturable bacteria from the arid mangrove sediments of the Red Sea
    Ramona Marasco, Grégoire Michoud, Fatmah O. Sefrji, Marco Fusi, Chakkiath P. Antony, Kholoud A. Seferji, Alan Barozzi, Giuseppe Merlino, Daniele Daffonchio
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Danxiaibacter flavus gen. nov., sp. nov., a novel bacterium of the family Chitinophagaceae isolated from forest soil on Danxia Mountain
    Zhuo-Huan Zheng, Chun-Yan Lu, Wen-Hui Lian, Jia-Rui Han, Fang Chen, Ting Zhou, Shuai Li, Lei Dong, Wen-Jun Li
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Metabolic profiling of petroleum-degrading microbial communities incubated under high-pressure conditions
    Jinbo Xu, Lu Wang, Weifeng Lv, Xinmin Song, Yong Nie, Xiao-Lei Wu
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Comparative Genomics Reveal the High Conservation and Scarce Distribution of Nitrogen Fixation nif Genes in the Plant-Associated Genus Herbaspirillum
    Ana Marina Pedrolo, Filipe Pereira Matteoli, Cláudio Roberto Fônseca Sousa Soares, Ana Carolina Maisonnave Arisi
    Microbial Ecology.2023; 86(1): 563.     CrossRef
  • UACG: Up-to-Date Archaeal Core Genes and Software for Phylogenomic Tree Reconstruction
    Seong-In Na, Michael James Bailey, Mauricio Chalita, Jae Hyoung Cho, Jongsik Chun
    Journal of Microbiology.2023; 61(7): 683.     CrossRef
  • Alkalicoccobacillus porphyridii sp. nov., isolated from a marine red alga, reclassification of Shouchella plakortidis and Shouchella gibsonii as Alkalicoccobacillus plakortidis comb. nov. and Alkalicoccobacillus gibsonii comb. nov., and emend
    Kyung Hyun Kim, Dong Min Han, Jae Kyeong Lee, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Phocaeicola oris sp. nov., an anaerobic bacterium isolated from the saliva of a patient with oral squamous cell carcinoma
    Jiung-Wen Chen, Chao-Jen Shih, Li-Wha Wu, Yen-Chi Wu, Wei-Fan Chiang, Yuh-Ling Chen, Jer-Horng Wu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Methylacidiphilum caldifontis gen. nov., sp. nov., a thermoacidophilic methane-oxidizing bacterium from an acidic geothermal environment, and descriptions of the family Methylacidiphilaceae fam. nov. and order Methylacidiphilales ord. nov.
    Samuel Imisi Awala, Joo-Han Gwak, Yongman Kim, Chanmee Seo, Andrea Strazzulli, Song-Gun Kim, Sung-Keun Rhee
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Genome-based classification of the class Halobacteria and description of Haladaptataceae fam. nov. and Halorubellaceae fam. nov
    Can Cui, Dong Han, Jing Hou, Heng-Lin Cui
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Complete genome sequence analysis of plant growth-promoting bacterium, Isoptericola sp. AK164 isolated from the rhizosphere of Avicennia marina growing at the Red Sea coast
    Amal Khalaf Alghamdi, Sabiha Parween, Heribert Hirt, Maged M. Saad
    Archives of Microbiology.2023;[Epub]     CrossRef
  • Draft genome sequence of Hahella sp. CR1 and its ability in producing cellulases for saccharifying agricultural biomass
    Melvin Chun Yun Tan, Muhammad Ramziuddin Zakaria, Kok Jun Liew, Chun Shiong Chong
    Archives of Microbiology.2023;[Epub]     CrossRef
  • Sedimenticola hydrogenitrophicus sp. nov. a chemolithoautotrophic bacterium isolated from a terrestrial mud volcano, and proposal of Sedimenticolaceae fam. nov. in the order Chromatiales
    Galina Slobodkina, Alexander Merkel, Nataliya Ratnikova, Alexandra Kuchierskaya, Alexander Slobodkin
    Systematic and Applied Microbiology.2023; 46(5): 126451.     CrossRef
  • Comparative genomic assessment of members of genus Tenacibaculum: an exploratory study
    Rohit Satyam, Shaban Ahmad, Khalid Raza
    Molecular Genetics and Genomics.2023; 298(5): 979.     CrossRef
  • Cave Thiovulum (Candidatus Thiovulum stygium) differs metabolically and genomically from marine species
    Mina Bizic, Traian Brad, Danny Ionescu, Lucian Barbu-Tudoran, Luca Zoccarato, Joost W Aerts, Paul-Emile Contarini, Olivier Gros, Jean-Marie Volland, Radu Popa, Jessica Ody, Daniel Vellone, Jean-François Flot, Scott Tighe, Serban M Sarbu
    The ISME Journal.2023; 17(3): 340.     CrossRef
  • Solicola gregarius gen. nov., sp. nov., a soil actinobacterium isolated after enhanced cultivation with Micrococcus luteus culture supernatant
    Marco A. Lopez Marin, Jachym Suman, Kunal Jani, Pavel Ulbrich, Tomas Cajthaml, Alena Filipova, Petr Pajer, Meina Neumann-Schaal, Michal Strejcek, Ondrej Uhlik
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Microbial Niche Differentiation during Nitrite-Dependent Anaerobic Methane Oxidation
    Wen-Bo Nie, Guo-Jun Xie, Xin Tan, Jie Ding, Yang Lu, Yi Chen, Chun Yang, Qiang He, Bing-Feng Liu, Defeng Xing, Nanqi Ren
    Environmental Science & Technology.2023; 57(17): 7029.     CrossRef
  • Allocoprobacillus halotolerans gen. nov., sp. nov and Coprobacter tertius sp. nov., isolated from human gut microbiota
    Nancy M. Y. Teng, Raymond Kiu, Rhiannon Evans, David J. Baker, Christian Zenner, Stephen D. Robinson, Lindsay J. Hall
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Aridibaculum aurantiacum gen. nov., sp. nov., isolated from the Kumtag Desert soil
    Lei Dong, Shuai Li, Guo-Yuan Shi, Jia-Rui Han, Chun-Yan Lu, Wen-Hui Lian, Ling-Xiang Yue, Dalal Hussien M. Alkhalifah, Wael N. Hozzein, Wen-Jun Li
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Acidaminococcus homini s sp. nov., Amedibacillus hominis sp. nov., Lientehia hominis gen. nov. sp. nov., Merdimmobilis hominis gen. nov. sp. nov., and Paraeggerthella hominis sp. nov., isolated from human faeces
    Rashidin Abdugheni, Dan-Hua Li, Yu-Jing Wang, Meng-Xuan Du, Nan Zhou, Chang Liu, Shuang-Jiang Liu
    International Journal of Systematic and Evolutionary Microbiology.2023;[Epub]     CrossRef
  • Vogesella aquatica sp. nov. and Vogesella margarita sp. nov., isolated from rivers in Southwest China
    Huibin Lu, Li Chen, Lingyang Kong, Linpei Huang, Guangjie Chen
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Dermatobacter hominis gen. nov., sp. nov., a new member of the family Iamiaceae, revealed the potential utilisation of skin-derived metabolites
    HyungWoo Jo, Chaeyun Baek, Young Mok Heo, Hye-Been Kim, Haeun Lee, Seunghyun Kang, Seyoung Mun, Yunseok Oh, Doyeong Ko, Kyudong Han, Raúl Riesco, Martha E. Trujillo, Dong-Geol Lee
    Antonie van Leeuwenhoek.2023; 116(11): 1139.     CrossRef
  • Dynamic Development of Viral and Bacterial Diversity during Grass Silage Preservation
    Johan S. Sáenz, Bibiana Rios-Galicia, Bianca Rehkugler, Jana Seifert
    Viruses.2023; 15(4): 951.     CrossRef
  • Alteromonas gilva sp. nov. and Erythrobacter fulvus sp. nov., isolated from a tidal mudflat
    Sunho Park, Inhyup Kim, Geeta Chhetri, Yoonseop So, Yonghee Jung, Haejin Woo, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Two novel alkalitolerant species Pseudalkalibacillus spartinae sp. nov. and Pseudalkalibacillus sedimenti sp. nov.
    Guo-Hong Liu, Shuang Han, Bing Li, Rui-Li Li, Huai Shi, Qian-Qian Chen, Hend A. Alwathnani, Christopher Rensing, Shun-Gui Zhou
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Description of Brachybacterium sillae sp. nov., a thermophilic bacterium isolated from a hot spring
    Dariimaa Ganbat, DoKyung Oh, Yong-Jik Lee, Dong-Woo Lee, Seong-Bo Kim, Won-Jae Chi, Ki-Eun Lee, Byoung-Hee Lee, You-Jung Jung, Jung-Sook Lee, Sang-Jae Lee
    Antonie van Leeuwenhoek.2023; 116(8): 791.     CrossRef
  • Bacillus mexicanus sp. nov., a biological control bacterium isolated from the common bean (Phaseolus vulgaris L.) crop in Sinaloa, Mexico
    Sergio de los Santos Villalobos, Carmen María Félix Pablos, Valeria Valenzuela Ruiz, Fannie I. Parra Cota
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Genome-centric metagenomic insights into the role of Chloroflexi in anammox, activated sludge and methanogenic reactors
    Patricia Bovio-Winkler, Leandro D. Guerrero, Leonardo Erijman, Pía Oyarzúa, María Eugenia Suárez-Ojeda, Angela Cabezas, Claudia Etchebehere
    BMC Microbiology.2023;[Epub]     CrossRef
  • Potential for homoacetogenesis via the Wood–Ljungdahl pathway in Korarchaeia lineages from marine hydrothermal vents
    Francesca Vulcano, Petra Hribovšek, Emily Olesin Denny, Ida H. Steen, Runar Stokke
    Environmental Microbiology Reports.2023; 15(6): 698.     CrossRef
  • Isolation and characterisation of novel Methanocorpusculum species indicates the genus is ancestrally host-associated
    James G. Volmer, Rochelle M. Soo, Paul N. Evans, Emily C. Hoedt, Ana L. Astorga Alsina, Benjamin J. Woodcroft, Gene W. Tyson, Philip Hugenholtz, Mark Morrison
    BMC Biology.2023;[Epub]     CrossRef
  • Thermomonas mangrovi sp. nov., isolated from soil of a mangrove nature reserve
    Shanshan Xu, Junpeng Chen, Si Chen, Qiliang Lai, Zengzhi Liu, Ying Xu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Proposal to transfer Bacillus massiliigorillae to the genus Peribacillus as Peribacillus massiliigorillae comb. nov., and Bacillus sinesaloumensis to the genus Ferdinandcohnia as Ferdinandcohnia sinesaloumensis comb. nov
    Awalagaway Dhulappa, Manik Prabhu Narsing Rao, Haijie Wang, Bhagwan Narayan Rekadwad, Ying-Qian Kang
    Archives of Microbiology.2023;[Epub]     CrossRef
  • Characterization and Antioxidant Activity of Exopolysaccharides Produced by Lysobacter soyae sp. nov Isolated from the Root of Glycine max L.
    Inhyup Kim, Geeta Chhetri, Yoonseop So, Sunho Park, Yonghee Jung, Haejin Woo, Taegun Seo
    Microorganisms.2023; 11(8): 1900.     CrossRef
  • Leucobacter edaphi sp. nov., a highly chromate-tolerant bacterium isolated from chromium containing chemical plant soil
    Bijun Zheng, Zhe Xu, Li Yang, Guangyang Jiang, Jia Chen, Yichen Yang, Yongqiang Tian
    Antonie van Leeuwenhoek.2023; 116(12): 1433.     CrossRef
  • Roseateles albus sp. nov., Roseateles koreensis sp. nov. and Janthinobacterium fluminis sp. nov., isolated from freshwater at Jucheon River, and emended description of Roseateles aquaticus comb. nov.
    Sunho Park, Inhyup Kim, Geeta Chhetri, Yoonseop So, Yonghee Jung, Haejin Woo, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Isolation and Genomic Analysis of 3-Chlorobenzoate-Degrading Bacteria from Soil
    Ifat Ara, Ryota Moriuchi, Hideo Dohra, Kazuhide Kimbara, Naoto Ogawa, Masaki Shintani
    Microorganisms.2023; 11(7): 1684.     CrossRef
  • Brytella acorum gen. nov., sp. nov., a novel acetic acid bacterium from sour beverages
    Atena Sadat Sombolestani, Dries Bongaerts, Eliza Depoorter, Ilse Cleenwerck, Anneleen D. Wieme, Scott J. Britton, Stefan Weckx, Luc De Vuyst, Peter Vandamme
    Systematic and Applied Microbiology.2023; 46(5): 126440.     CrossRef
  • Complete genome sequence of Vibrio gazogenes PB1: an estuarine bacterium capable of producing prodigiosin from starch or cellulose
    Bincy Baby, Dhanya Vijay, Pretty S. Philip, Afra A. Alnuaimi, Hessa M. Almansoori, Sarah O. Areidat, Gulfaraz Khan, Ranjit Vijayan, M. Kalim Akhtar
    Frontiers in Marine Science.2023;[Epub]     CrossRef
  • Tianweitania aestuarii sp. nov., isolated from a coastal dune, reclassification of Corticibacterium populi as Tianweitania populi comb. nov., and emended description of the genus Tianweitania
    Ji Hyeon Song, Sooyeon Park, Jung-Sook Lee, Wonyong Kim, Jung-Hoon Yoon
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Fluviispira vulneris sp. nov., isolated from human wound secretions
    Peijuan Tang, Na Peng, Pengwen Ouyang, Sheng Long, Zhenhua Wei, Xingchun Chen, Pinghua Qu, Liangyi Xie
    Antonie van Leeuwenhoek.2023; 116(12): 1305.     CrossRef
  • Neorhizobium turbinariae sp. nov., a coral-beneficial bacterium isolated from Turbinaria peltata
    Hao Sun, Zhiyuan Miao, Shuai Liu, Xuerui Liu, Bogui Chen, Baolin Liao, Baohua Xiao
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Description of Salinimicrobium tongyeongense sp. nov., isolated from seawater
    Dariimaa Ganbat, Dong-Woo Lee, Seong-Bo Kim, Yong-Jik Lee, Gaewon Nam, Won-Jae Chi, Byoung-Hee Lee, You-Jung Jung, Jung-Sook Lee, Sang-Jae Lee
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Genomic analysis and characterization of phages infecting the marine Roseobacter CHAB-I-5 lineage reveal a globally distributed and abundant phage genus
    Zefeng Zhang, Zuqing Wu, He Liu, Mingyu Yang, Rui Wang, Yanlin Zhao, Feng Chen
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • PhaGAA: an integrated web server platform for phage genome annotation and analysis
    Jiawei Wu, Qingrui Liu, Min Li, Jiliang Xu, Chen Wang, Junyin Zhang, Minfeng Xiao, Yannan Bin, Junfeng Xia, Can Alkan
    Bioinformatics.2023;[Epub]     CrossRef
  • Comparative Genomics Reveals Three Genetic Groups of the Whitefly Obligate Endosymbiont Candidatus Portiera aleyrodidarum
    Teng Lei, Ning Luo, Chao Song, Junwei Yu, Yuhang Zhou, Xin Qi, Yinquan Liu
    Insects.2023; 14(11): 888.     CrossRef
  • Roseobacter insulae sp. nov. and Loktanella gaetbuli sp. nov., isolated from tidal flats in the Yellow Sea in Korea
    Eun Bee Lee, Sooyeon Park, Wonyong Kim, Jung-Hoon Yoon
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Novosphingobium mangrovi sp. nov., isolated from mangrove sediment
    Qian Huang, Zhihui Qian, Tao Peng, Jin Li, Xueying Ye, Tongwang Huang, Zhong Hu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Phylotaxonomic assessment based on four core gene sets and proposal of a genus definition among the families Paracoccaceae and Roseobacteraceae
    Dao-Feng Zhang, Wei He, Zongze Shao, Iftikhar Ahmed, Yuqin Zhang, Wen-Jun Li, Zhe Zhao
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Scleromatobacter humisilvae gen. nov., sp. nov., a novel bacterium isolated from oak forest soil
    Sophie Mieszkin, Blandine Trouche, Julien Ancousture, Youssef Raouf, Stéphane Uroz, Karine Alain
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Comammox Nitrospira and Ammonia-Oxidizing Archaea Are Dominant Ammonia Oxidizers in Sediments of an Acid Mine Lake Containing High Ammonium Concentrations
    Deyong Li, Zhichang Ren, Yangqi Zhou, Lugao Jiang, Min Zheng, Guoqiang Liu, Jennifer B. Glass
    Applied and Environmental Microbiology.2023;[Epub]     CrossRef
  • Citrobacter sp. Y3 harbouring novel gene HBCD-hd-1 mineralizes hexabromocyclododecane via new metabolic pathways according to multi-omics characterization
    Xingxing Peng, Tianyu Li, Qihang Zheng, Yingyuan Lu, Yuzhe He, Yetao Tang, Rongliang Qiu
    Journal of Hazardous Materials.2023; 442: 130071.     CrossRef
  • Opacimonas viscosa gen. nov., sp. nov., a novel bacterium isolated from phycosphere
    Xuanru Lin, Runlin Cai, Guanjing Cai, Jianmin Xie, Zhenyuan Zhou, Hui Wang
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Description of Microbacterium neungamense sp. nov. isolated from a hot spring
    Dariimaa Ganbat, Ga Eul Jeong, DoKyung Oh, Dong-Woo Lee, Yong-Jik Lee, Seong-Bo Kim, In-Tae Cha, Won-Jae Chi, Seul-Ki Park, Jung-Sook Lee, Sang-Jae Lee
    Archives of Microbiology.2023;[Epub]     CrossRef
  • Habitat distribution of the genus Belliella in continental waters and the description of Belliella alkalica sp. nov., Belliella calami sp. nov. and Belliella filtrata sp. nov.
    Kristóf Korponai, Sára Szuróczki, Zsuzsanna Márton, Attila Szabó, Paula V. Morais, Diogo Neves Proença, Erika Tóth, Emil Boros, Károly Márialigeti, Tamás Felföldi
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Molecular Characterization of Indigenous Rhizobia from Kenyan Soils Nodulating with Common Beans
    Clabe Wekesa, Kelvin Kiprotich, Patrick Okoth, George O. Asudi, John O. Muoma, Alexandra C. U. Furch, Ralf Oelmüller
    International Journal of Molecular Sciences.2023; 24(11): 9509.     CrossRef
  • Putative novel hydrogen- and iron-oxidizing sheath-producing Zetaproteobacteria thrive at the Fåvne deep-sea hydrothermal vent field
    Petra Hribovšek, Emily Olesin Denny, Håkon Dahle, Achim Mall, Thomas Øfstegaard Viflot, Chanakan Boonnawa, Eoghan P. Reeves, Ida Helene Steen, Runar Stokke, Michael S. Rappe
    mSystems.2023;[Epub]     CrossRef
  • Thiovibrio frasassiensis gen. nov., sp. nov., an autotrophic, elemental sulphur disproportionating bacterium isolated from sulphidic karst sediment, and proposal of Thiovibrionaceae fam. nov.
    Heidi S. Aronson, Cais Thomas, Maia K. Bhattacharyya, Shaan R. Eckstein, Sophia R. Jensen, Roman A. Barco, Jennifer L. Macalady, Jan P. Amend
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Hufsiella ginkgonis gen. nov., sp. nov. and Hufsiella arboris sp. nov., isolated from tree barks
    Heeyoung Kang, Seokhyeon Bae, Haneul Kim, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Phenotypic and genomic characterization of the first alkaliphilic aceticlastic methanogens and proposal of a novel genus Methanocrinis gen.nov. within the family Methanotrichaceae
    Maria A. Khomyakova, Alexander Y. Merkel, Alexander I. Slobodkin, Dimitry Y. Sorokin
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Description of Xanthocytophaga agilis sp. nov. and Xanthocytophaga flavus sp. nov. of the new genus Xanthocytophaga gen. nov and the proposal of Rhodocytophagaceae fam. nov. within the order Cytophagales
    Xianjiao Zhang, Guang-Da Feng, Yang Liu, Fan Yang, Yanxuan Li, Xiaoqin Deng, Honghui Zhu, Qing Yao
    Archives of Microbiology.2023;[Epub]     CrossRef
  • Draft genome sequence of Joostella atrarenae M1-2T with cellulolytic and hemicellulolytic ability
    Kok Jun Liew, Muhammad Ramziuddin Zakaria, Clarine Wan Ling Hong, Melvin Chun Yun Tan, Chun Shiong Chong
    3 Biotech.2023;[Epub]     CrossRef
  • Transcriptional Landscapes of Herelleviridae Bacteriophages and Staphylococcus aureus during Phage Infection: An Overview
    Maria Kornienko, Dmitry Bespiatykh, Roman Gorodnichev, Narina Abdraimova, Egor Shitikov
    Viruses.2023; 15(7): 1427.     CrossRef
  • Tenacibaculum tangerinum sp. nov., isolated from a tidal flat sediment
    Sang Hyun Lee, Yeonjae Yoo, Dae Young Kwon, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, Jae-Jin Kim
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Mesonia aestuariivivens sp. nov., isolated from a tidal flat
    Sooyeon Park, Jung-Sook Lee, Wonyong Kim, Jung-Hoon Yoon
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Metabacillus rhizolycopersici sp. nov., Isolated from the Rhizosphere Soil of Tomato Plants
    Rong Ma, Shan-Wen He, Xing Wang, Kyu Kyu Thin, Ji-Gang Han, Xiao-Xia Zhang
    Current Microbiology.2022;[Epub]     CrossRef
  • Longitalea arenae gen. nov., sp. nov. and Longitalea luteola sp. nov., two new members of the family Chitinophagaceae isolated from desert soil
    Shuai Li, Lei Dong, Jia-Rui Han, Guo-Yuan Shi, Chun-Yan Lu, Lu Xu, Wen-Hui Lian, Dalal Hussien M. Alkhalifah, Wael N. Hozzein, Wen-Jun Li
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Description of Deefgea piscis sp. nov., and Deefgea tanakiae sp. nov., isolated from the gut of Korean indigenous fish
    Do-Hun Gim, So-Yeon Lee, Jeong Eun Han, Jae-Yun Lee, Seo Min Kang, Jin-Woo Bae
    Journal of Microbiology.2022; 60(11): 1061.     CrossRef
  • Fibrella aquatilis sp. nov., Fibrella rubiginis sp. nov. and Fibrella forsythiae sp. nov., isolated from freshwater, rusty iron and forsythia flower
    Heeyoung Kang, Haneul Kim, Seokhyeon Bae, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Pedomonas mirosovicensis gen. nov., sp. nov., a bacterium isolated from soil with the aid of Micrococcus luteus culture supernatant containing resuscitation-promoting factor
    Marco A. Lopez Marin, Jachym Suman, Kunal Jani, Pavel Ulbrich, Tomas Cajthaml, Petr Pajer, Jacqueline Wolf, Meina Neumann-Schaal, Michal Strejcek, Ondrej Uhlik
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Psychroflexus curvus sp. nov., Psychroflexus longus sp. nov. and Psychroflexus montanilacus sp. nov., isolated from salt lakes on the Tibetan Plateau
    Huibin Lu, Peixin Gao, Dorji Phurbu, Qinglong Wu, Peng Xing
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • (Meta)Genomic Analysis Reveals Diverse Energy Conservation Strategies Employed by Globally Distributed Gemmatimonadota
    Xiaowei Zheng, Xin Dai, Yaxin Zhu, Jian Yang, Hongchen Jiang, Hailiang Dong, Li Huang, Steven J. Hallam
    mSystems.2022;[Epub]     CrossRef
  • Complete Genome Sequence of Weissella cibaria NH9449 and Comprehensive Comparative-Genomic Analysis: Genomic Diversity and Versatility Trait Revealed
    Komwit Surachat, Duangporn Kantachote, Monwadee Wonglapsuwan, Arnon Chukamnerd, Panchalika Deachamag, Pimonsri Mittraparp-arthorn, Kongpop Jeenkeawpiam
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Sulfuricystis multivorans gen. nov., sp. nov. and Sulfuricystis thermophila sp. nov., facultatively autotropic sulfur-oxidizing bacteria isolated from a hot spring, and emended description of the genus Rugosibacter
    Hisaya Kojima, Miho Watanabe, Naoyuki Miyata, Manabu Fukui
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Draft genome sequence of Thermovorax subterraneus 70BT, a thermophile isolated from a geothermally active underground mine that produces hydrogen
    Kian Mau Goh, Kok Jun Liew, Saleha Shahar, Iffah Izzati Zakaria, Ummirul Mukminin Kahar
    Data in Brief.2022; 45: 108695.     CrossRef
  • Consumption of N2O by Flavobacterium azooxidireducens sp. nov. Isolated from Decomposing Leaf Litter of Phragmites australis (Cav.)
    Undine Behrendt, Tobias Spanner, Jürgen Augustin, Dominik H. Zak, Marcus A. Horn, Steffen Kolb, Andreas Ulrich
    Microorganisms.2022; 10(11): 2304.     CrossRef
  • Citrobacter Sp. Y3 Harboring a Novel Gene Hbcd-Hd-1 Mineralizes Hexabromocyclododecane (Hbcd) with New Metabolic Pathways Based on Multi-Omics Characterization
    Xingxing Peng, Tianyu Li, Qihang Zheng, Yingyuan Lu, Yuzhe He, Yetao Tang, Rongliang Qiu
    SSRN Electronic Journal.2022;[Epub]     CrossRef
  • Neokomagataea anthophila sp. nov., an osmotolerant acetic acid bacterium isolated in Thailand and emended description of the genus Neokomagataea
    Piyanat Charoenyingcharoen, Pattaraporn Yukphan, Sukunphat Malimas, Somsak Likhitrattanapisal, Somboon Tanasupawat, Yuzo Yamada
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Description of Flavobacterium cyclinae sp. nov. and Flavobacterium channae sp. nov., isolated from the intestines of Cyclina sinensis (Corb shell) and Channa argus (Northern snakehead)
    Seomin Kang, Jae-Yun Lee, Jeong Eun Han, Yun-Seok Jeong, Do-Hun Gim, Jin-Woo Bae
    Journal of Microbiology.2022; 60(9): 890.     CrossRef
  • Systematic whole-genome sequencing reveals an unexpected diversity among actinomycetoma pathogens and provides insights into their antibacterial susceptibilities
    Andrew Keith Watson, Bernhard Kepplinger, Sahar Mubarak Bakhiet, Najwa Adam Mhmoud, Jonathan Chapman, Nick EE Allenby, Katarzyna Mickiewicz, Michael Goodfellow, Ahmed Hassan Fahal, Jeff Errington, David John Chandler
    PLOS Neglected Tropical Diseases.2022; 16(7): e0010128.     CrossRef
  • Insights into ecological roles of uncultivated bacteria in Katase hot spring sediment from long-read metagenomics
    Shingo Kato, Sachiko Masuda, Arisa Shibata, Ken Shirasu, Moriya Ohkuma
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov. sp. nov., Bombilactobacillus folatiphilus sp. nov. and Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid bacterial isolates from stingless bees Tetragonula ca
    Scott A. Oliphant, Nathan S. Watson-Haigh, Krista M. Sumby, Jennifer Gardner, Scott Groom, Vladimir Jiranek
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Description of Prasinibacter corallicola gen. nov., sp. nov., a zeaxanthin-producing bacterium isolated from stony coral Porites lutea
    Guanghua Wang, Jianfeng Liu, Yuanjin Li, Jin Li, Jixin Luo, Biao Chen, Zhiheng Liao, Hongfei Su, Jiayuan Liang, Kefu Yu
    Antonie van Leeuwenhoek.2022; 115(7): 933.     CrossRef
  • Faunimonas pinastri gen. nov., sp. nov., an endophyte from a pine tree of the family Pleomorphomonadaceae, class Alphaproteobacteria
    Diogo N. Proença, William B. Whitman, Nicole Shapiro, Tanja Woyke, Nikos C. Kyrpides, Paula V. Morais
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Physiological and genomic characterisation of Luteimonas fraxinea sp. nov., a bacterial species associated with trees tolerant to ash dieback
    Kristina Ulrich, Regina Becker, Undine Behrendt, Michael Kube, Volker Schneck, Andreas Ulrich
    Systematic and Applied Microbiology.2022; 45(4): 126333.     CrossRef
  • Neglectibacter timonensis gen. nov., sp. nov. and Scatolibacter rhodanostii gen. nov., sp. nov., two anaerobic bacteria isolated from human stool samples
    Rita Zgheib, Ahmad Ibrahim, Hussein Anani, Sokhna Ndongo, Melhem Bilen, Nicholas Armstrong, Magali Richez, Didier Raoult, Pierre-Edouard Fournier
    Archives of Microbiology.2022;[Epub]     CrossRef
  • A stable home for an equine pathogen: valid publication of the binomial Prescottella equi gen. nov., comb. nov., and reclassification of four rhodococcal species into the genus Prescottella.
    Vartul Sangal, Michael Goodfellow, Amanda L. Jones, Iain C. Sutcliffe
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Devosia ureilytica sp. nov., isolated from Kuche River in China
    Bin-Bin Li, Xiao-Juan Zhang, Danni Wu, Dan-Dan Zhang, Bao-Zhu Fang, Hong-Can Liu, Yu-Guang Zhou, Man Cai, Wen-Jun Li, Guo-Xing Nie
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Sphingomonas arenae sp. nov., isolated from desert soil
    Lei Dong, Shuai Li, Wen-Hui Lian, Qi-Chuang Wei, Osama Abdalla Abdelshafy Mohamad, Wael N. Hozzein, Iftikhar Ahmed, Wen-Jun Li
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Prokaryotes of renowned Karlovy Vary (Carlsbad) thermal springs: phylogenetic and cultivation analysis
    Tereza Smrhova, Kunal Jani, Petr Pajer, Gabriela Kapinusova, Tomas Vylita, Jachym Suman, Michal Strejcek, Ondrej Uhlik
    Environmental Microbiome.2022;[Epub]     CrossRef
  • Dongia deserti sp. nov., Isolated from the Gurbantunggut Desert Soil
    Chun-Yan Lu, Lei Dong, Dong Wang, Shuai Li, Bao-Zhu Fang, Ming-Xian Han, Feng Liu, Hong-Chen Jiang, Iftikhar Ahmed, Wen-Jun Li
    Current Microbiology.2022;[Epub]     CrossRef
  • Cell Wall Glycopolymers as a Diagnostic Trait of Arthrobacter crystallopoietes
    N. V. Potekhina, E. V. Ariskina, A. S. Shashkov, T. M. Tul’skaya, L. I. Evtushenko
    Microbiology.2022; 91(3): 259.     CrossRef
  • Variovorax terrae sp. nov. Isolated from Soil with Potential Antioxidant Activity
    Chae Yung Woo, Jaisoo Kim
    Journal of Microbiology and Biotechnology.2022; 32(7): 855.     CrossRef
  • Parasphingorhabdus cellanae sp. nov., isolated from the gut of a Korean limpet, Cellana toreuma
    Ji-Ho Yoo, Jeong Eun Han, June-Young Lee, Su-Won Jeong, Yun-Seok Jeong, Jae-Yun Lee, So-Yeon Lee, Hojun Sung, Euon Jung Tak, Hyun Sik Kim, Pil Soo Kim, Jee-Won Choi, Do-Yeon Kim, In Chul Jeong, Do-Hun Gim, Seo Min Kang, Jin-Woo Bae
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Algiphilus acroporae sp. nov. and Coraliihabitans acroporae gen. nov. sp. nov., isolated from scleractinian coral Acropora digitifera
    Hao Sun, Huina Zheng, Baolin Liao, Bogui Chen, Aihua Li, Baohua Xiao
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Comparative Genomics Reveal the Animal-Associated Features of the Acanthopleuribacteraceae Bacteria, and Description of Sulfidibacter corallicola gen. nov., sp., nov.
    Guanghua Wang, Yuanjin Li, Jianfeng Liu, Biao Chen, Hongfei Su, Jiayuan Liang, Wen Huang, Kefu Yu
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Oceanobacillus alkalisoli sp. nov., an alkaliphilic bacterium isolated from saline-alkaline soil
    Pin-Jiao Jin, Lei Sun, Manik Prabhu Narsing Rao, Jian-Yu Jiao, Xiu-Jun Sun, Wen-Jun Li, Shuang Wang
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Sabulibacter ruber gen. nov., sp. nov., a novel bacterium in the family Hymenobacteraceae, isolated from desert soil
    Wen-Hui Lian, Shuai Li, Zhi-Liang Lin, Jia-Rui Han, Osama Abdalla Abdelshafy Mohamad, Li Li, Ying Lin, Wael N. Hozzein, Lei Dong, Wen-Jun Li
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Sessilibacter corallicola gen. nov., sp. nov., a sessile bacterium isolated from coral Porites lutea
    Jianfeng Liu, Jin Li, Jixin Luo, Yuanjin Li, Zian Yang, Chengli Huang, Feilong Sun, Guanghua Wang
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Genomic and physiological analysis of C50 carotenoid-producing novel Halorubrum ruber sp. nov.
    Chi Young Hwang, Eui-Sang Cho, Won Jong Rhee, Eunjung Kim, Myung-Ji Seo
    Journal of Microbiology.2022; 60(10): 1007.     CrossRef
  • Novosphingobium percolationis sp. nov. and Novosphingobium huizhouense sp. nov., isolated from landfill leachate of a domestic waste treatment plant
    Xiaoling He, Huibin Lu, Wenzhe Hu, Tongchu Deng, Xiaofan Gong, Xunan Yang, Da Song, Mei He, Meiying Xu
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Enterovibrio paralichthyis sp. nov., isolated from the gut of an olive flounder Paralichthys olivaceus
    Young-Ok Kim, In-Suk Park, Dong-Gyun Kim, Sooyeon Park, Sung Hoon Han, Jung-Hoon Yoon
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Desulfofustis limnaeus sp. nov., a freshwater sulfate-reducing bacterium isolated from marsh soil
    Miho Watanabe, Ayaka Takahashi, Hisaya Kojima, Naoyuki Miyata, Manabu Fukui
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Taxogenomic status of phylogenetically distant Frankia clusters warrants their elevation to the rank of genus: A description of Protofrankia gen. nov., Parafrankia gen. nov., and Pseudofrankia gen. nov. as three novel genera within the family Frankiaceae
    Maher Gtari
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Genomic and Physiological Characterization of Metabacillus flavus sp. nov., a Novel Carotenoid-Producing Bacilli Isolated from Korean Marine Mud
    Chi Young Hwang, Eui-Sang Cho, Deok Jun Yoon, In-Tae Cha, Dong-Hyun Jung, Young-Do Nam, So-Lim Park, Seong-Il Lim, Myung-Ji Seo
    Microorganisms.2022; 10(5): 979.     CrossRef
  • Nocardioides palaemonis sp. nov. and Tessaracoccus palaemonis sp. nov., isolated from the gastrointestinal tract of lake prawn
    Do-Yeon Kim, In-Chul Jeong, So-Yeon Lee, Yun-Seok Jeong, Jeong Eun Han, Euon Jung Tak, June-Young Lee, Pil Soo Kim, Dong-Wook Hyun, Jin-Woo Bae
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Description of Ornithinimicrobium ciconiae sp. nov., and Ornithinimicrobium avium sp. nov., isolated from the faeces of the endangered and near-threatened birds
    So-Yeon Lee, Hojun Sung, Pil Soo Kim, Hyun Sik Kim, Jae-Yun Lee, June-Young Lee, Yun-Seok Jeong, Euon Jung Tak, Jeong Eun Han, Dong-Wook Hyun, Jin-Woo Bae
    Journal of Microbiology.2021; 59(11): 978.     CrossRef
  • Phylogenomic Analyses of the Genus Pseudomonas Lead to the Rearrangement of Several Species and the Definition of New Genera
    Zaki Saati-Santamaría, Ezequiel Peral-Aranega, Encarna Velázquez, Raúl Rivas, Paula García-Fraile
    Biology.2021; 10(8): 782.     CrossRef
  • Pseudomarimonas arenosa gen. nov., sp. nov. isolated from marine sand
    Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Yangia mangrovi sp. nov., a novel member of the Roseobacter clade isolated from mangrove soil and emended description of Yangia pacifica Dai et al. 2006
    Ashish Verma, Shiva S. Sundharam, Yash Pal, Bhawana Bisht, Pooja Yadav, Srinivasan Krishnamurthi
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef

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