Journal of Microbiology

Journal Articles

Diversity and Dynamics of Marine Arenicolous Fungi in Three Seasides of the Korean Peninsula: Jun Won Lee , Chang Wan Seo , Wonjun Lee , Ji Seon Kim , Ki Hyeong Park , Yoonhee Cho , Young Woon Lim; J. Microbiol. 2023;61(1):63-82. Published online January 30, 2023; DOI: https://doi.org/10.1007/s12275-023-00011-1

53 View
0 Download
4 Web of Science
3 Crossref

Various arenicolous fungal species have been detected from the beach sand in the coastal area. However, little has been revealed regarding their distribution and dynamics. To investigate the overall diversity of marine arenicolous fungi (MAFs) in Korea and whether the composition of MAFs is affected by ocean currents, we isolated and analyzed the fungal community from the western, southern, and eastern seasides of the Korean Peninsula. In total, 603 strains were isolated and identified as 259 species based on appropriate molecular markers for each genus (ITS, BenA, CaM, tef1, and act). The composition of MAFs showed differences among the seasides. Our results indicate that many MAFs inhabit the beach sand on the Korean Peninsula, and the composition of MAFs is also affected by ocean currents flowing along each coast.

Citations

Citations to this article as recorded by

The genus Peniophora (Russulales, Basidiomycota) from Patagonia revisited
Mario Rajchenberg, Andrés de Errasti, Sergio Pérez Gorjón
Mycological Progress.2024;[Epub] CrossRef
Contributions to the Inocybe umbratica–paludinella (Agaricales) Group in China: Taxonomy, Species Diversity, and Molecular Phylogeny
Xin Chen, Wen-Jie Yu, Tolgor Bau, P. Brandon Matheny, Egon Horak, Yu Liu, Li-Wu Qin, Li-Ping Tang, Yu-Peng Ge, Tie-Zhi Liu, Yu-Guang Fan
Journal of Fungi.2024; 10(12): 893. CrossRef
Long-Term Investigation of Marine-Derived Aspergillus Diversity in the Republic of Korea
Jun Won Lee, Wonjun Lee, Rekhani Hansika Perera, Young Woon Lim
Mycobiology.2023; 51(6): 436. CrossRef

Comparative portrayal of ocular surface microbe with and without dry eye: ZhenHao Li , Yufang Gong , ShuZe Chen , SiQi Li , Yu Zhang , HuiMin Zhong , ZhouCheng Wang , YiFan Chen , QiXin Deng , YuTing Jiang , LiYing Li , Min Fu , GuoGuo Yi; J. Microbiol. 2019;57(11):1025-1032. Published online August 28, 2019; DOI: https://doi.org/10.1007/s12275-019-9127-2

47 View
0 Download
52 Web of Science
56 Crossref

Abstract

To compare the ocular surface (OS) microbial communities and diversity between dry eye (DE) and non-DE (NDE). Furthermore, we compared meibomian gland dysfunction (MGD) and non-MGD (NMGD) among DE subjects. The V3-V4 region of 16S rRNA gene high-throughput sequencing was performed in the conjunctival swab samples to investigate the composition of the OS bacterial community in DE (n=35) and NDE (n=54) and compared the composition of MGD (n=25) and NMGD (n=10) among DE subjects. Deep sequencing of OS 16S rDNA from DE (n=35) and NDE (n=54) demonstrated great a difference in alpha and beta diversity between the OS bacterial flora (P < 0.05). The similar OS microbial structures were shown at the phylum and genus levels by bioinformatics analysis between them, and in LEfSe (linear discriminant analysis effect size) analysis, Bacteroidia and Bacteroidetes were enriched in DE, while Pseudomonas was plentiful in NDE (linear discriminant analysis [LDA] > 4.0). Among the DE group, there was no significant difference in α and β diversity between MGD and NMGD (P > 0.05). Surprisingly, Bacilli was the dominant microbe in MGD, and Bacteroidetes was the superior bacteria in NMGD among DE subjects (LDA > 4.0). Different diversity of OS bacteria composition between DE and NDE and the altered diversity of OS bacteria may play an important role in DE. Moreover, the lower dominance of OS bacteria in DE may be associated with the occurrence and development of DE. Although there was no significant difference in alpha and beta analysis, the OS dominant microbe between MGD and NMGD among DE was different.

Citations

Citations to this article as recorded by

What is the impact of microbiota on dry eye: a literature review of the gut-eye axis
Jiaping Song, He Dong, Tingting Wang, He Yu, Jian Yu, Shaokang Ma, Xiaohai Song, Qianhui Sun, Yongcheng Xu, Mingkai Liu
BMC Ophthalmology.2024;[Epub] CrossRef
Axis "microbiota – gut – eye": a review
Irina N. Zakharova, Irina V. Berezhnaya, Diana K. Dmitrieva, Viktoria V. Pupykina
Pediatrics. Consilium Medicum.2024; (2): 179. CrossRef
Effects of dietary imbalances of micro- and macronutrients on the ocular microbiome and its implications in dry eye disease
Madeline Pilkington, Declan Lloyd, Brad Guo, Stephanie L. Watson, Kenneth Gek-Jin Ooi
Exploration of Medicine.2024; : 127. CrossRef
Unique composition of ocular surface microbiome in the old patients with dry eye and diabetes mellitus in a community from Shanghai, China
Zhangling Chen, Senlin Lin, Yi Xu, Lina Lu, Haidong Zou
BMC Microbiology.2024;[Epub] CrossRef
The Ocular Microbiome: Micro-Steps Towards Macro-Shift in Targeted Treatment? A Comprehensive Review
Ewelina Trojacka, Justyna Izdebska, Jacek Szaflik, J. Przybek-Skrzypecka
Microorganisms.2024; 12(11): 2232. CrossRef
Ocular microbiota types and longitudinal microbiota alterations in patients with chronic dacryocystitis with and without antibiotic pretreatment
Shengru Wu, Limin Zhu, Tingting Wang, Chenguang Zhang, Jiaqi Lin, Yanjin He, Junhu Yao, Tingting Lin, Juan Du
iMetaOmics.2024;[Epub] CrossRef
Review on the Treatment of Dry Eye Based on Intestinal Axial Theory
伟琴王
Advances in Clinical Medicine.2024; 14(11): 152. CrossRef
Longitudinal Changes of Ocular Surface Microbiome in Patients Undergoing Hemopoietic Stem Cell Transplant (HSCT)
Suzanne Clougher, Marco Severgnini, Antonella Marangoni, Clarissa Consolandi, Tania Camboni, Sara Morselli, Mario Arpinati, Francesca Bonifazi, Michele Dicataldo, Tiziana Lazzarotto, Luigi Fontana, Piera Versura
Journal of Clinical Medicine.2023; 13(1): 208. CrossRef
Comparison of Conjunctival Sac Microbiome between Low and High Myopic Eyes
Kang Xiao, Zhengyu Chen, Qin Long
Journal of Microbiology.2023; 61(5): 571. CrossRef
Metagenomic analysis of microbiological changes on the ocular surface of diabetic children and adolescents with a dry eye
Zhangling Chen, Ying Xiao, Yan Jia, Qiurong Lin, Yu Qian, Lipu Cui, Zhaoyu Xiang, Mingfang Li, Chenhao Yang, Haidong Zou
BMC Microbiology.2023;[Epub] CrossRef
Contact lenses and ocular dysbiosis, from the transitory to the pathological
B. Barrera, A. Bustamante, M. Marín-Cornuy, P. Aguila-Torres
Archivos de la Sociedad Española de Oftalmología (English Edition).2023; 98(10): 586. CrossRef
Investigating the Ocular Surface Microbiome: What Can It Tell Us?
Virginie G Peter, Sophia C Morandi, Elio L Herzog, Martin S Zinkernagel, Denise C Zysset-Burri
Clinical Ophthalmology.2023; Volume 17: 259. CrossRef
Tear film microbiome in Sjogren’s and non-Sjogren’s aqueous deficiency dry eye
Spandita Pal, Gorati Vani, Pragnya Rao Donthineni, Sayan Basu, Kotakonda Arunasri
Indian Journal of Ophthalmology.2023; 71(4): 1566. CrossRef
Lentes de contacto y disbiosis ocular, de lo transitorio a lo patológico
B. Barrera, A. Bustamante, M. Marín-Cornuy, P. Aguila-Torres
Archivos de la Sociedad Española de Oftalmología.2023; 98(10): 586. CrossRef
Targeting the Gut–Eye Axis: An Emerging Strategy to Face Ocular Diseases
Lucrezia Irene Maria Campagnoli, Angelica Varesi, Annalisa Barbieri, Nicoletta Marchesi, Alessia Pascale
International Journal of Molecular Sciences.2023; 24(17): 13338. CrossRef
Challenges and insights in the exploration of the low abundance human ocular surface microbiome
Elio L. Herzog, Marco Kreuzer, Martin S. Zinkernagel, Denise C. Zysset-Burri
Frontiers in Cellular and Infection Microbiology.2023;[Epub] CrossRef
Ocular surface microbiota dysbiosis contributes to the high prevalence of dry eye disease in diabetic patients
Qingyu An, Haidong Zou
Critical Reviews in Microbiology.2023; 49(6): 805. CrossRef
Meibomian Gland Dysfunction Clinical Practice Guidelines
Shiro Amano, Jun Shimazaki, Norihiko Yokoi, Yuichi Hori, Reiko Arita, Hiroto Obata, Motoko Kawashima, Shizuka Koh, Takashi Suzuki, Tomo Suzuki, Masahiko Yamaguchi, Masakazu Yamada, Takashi Itokawa, Hiroko Iwashita, Tomohiko Usui, Miki Uchino, Fumika Oya,
Japanese Journal of Ophthalmology.2023; 67(4): 448. CrossRef
Effects of Carboxymethylcellulose Artificial Tears on Ocular Surface Microbiome Diversity and Composition, A Randomized Controlled Trial
Yujia Zhou, Gurjit S. Sidhu, Joan A. Whitlock, Bishoy Abdelmalik, Zachary Mayer, Youlei Li, Gary P. Wang, Walter A. Steigleman
Translational Vision Science & Technology.2023; 12(8): 5. CrossRef
Impact of Exposomes on Ocular Surface Diseases
Merrelynn Hong, Louis Tong, Jodhbir S. Mehta, Hon Shing Ong
International Journal of Molecular Sciences.2023; 24(14): 11273. CrossRef
The Microbiome, Ocular Surface, and Corneal Disorders
Michael J. Zilliox, Charles S. Bouchard
The American Journal of Pathology.2023; 193(11): 1648. CrossRef
Ocular microbiome changes in dry eye disease and meibomian gland dysfunction
Jerome Ozkan, Marwan E. Majzoub, Minas Coroneo, Torsten Thomas, Mark Willcox
Experimental Eye Research.2023; 235: 109615. CrossRef
An insight on the eye bacterial microbiota and its role on dry eye disease
Joicye Hernández‐Zulueta, José Navarro‐Partida, Oscar Eduardo Sánchez‐Aguilar, Héctor Daniel Santa Cruz‐Pavlovich, Carlos Rodrigo Castro‐Castañeda, Alejandro González‐De la Rosa
APMIS.2023; 131(3): 103. CrossRef
Ocular conjunctival microbiome profiling in dry eye disease: A case control pilot study
Noopur Gupta, Jyoti Chhibber-Goel, Yogita Gupta, Souvik Mukherjee, Arindam Maitra, Amit Sharma, Radhika Tandon
Indian Journal of Ophthalmology.2023; 71(4): 1574. CrossRef
Significantly different results in the ocular surface microbiome detected by tear paper and conjunctival swab
Zhangling Chen, Zhaoyu Xiang, Lipu Cui, Xinran Qin, Shuli Chen, Huiyi Jin, Haidong Zou
BMC Microbiology.2023;[Epub] CrossRef
DNA extraction protocol impacts ocular surface microbiome profile
Heleen Delbeke, Ingele Casteels, Marie Joossens
Frontiers in Microbiology.2023;[Epub] CrossRef
Composition and diversity of meibum microbiota in meibomian gland dysfunction and the correlation with tear cytokine levels
Ubonwan Rasaruck, Ngamjit Kasetsuwan, Thanachaporn Kittipibul, Pisut Pongchaikul, Tanittha Chatsuwan, Kofi Asiedu
PLOS ONE.2023; 18(12): e0296296. CrossRef
Visualization of normal ocular surface microflora via impression cytology sample using scanning electron microscopy with lanthanide contrasting
M.V. Kravchik, E.S. Rodina, A.M. Subbot, O.I. Pimonova, E.I. Fettser, I.A. Novikov
Vestnik oftal'mologii.2022; 138(6): 5. CrossRef
The species-level microbiota of healthy eyes revealed by the integration of metataxonomics with culturomics and genome analysis
Kui Dong, Ji Pu, Jing Yang, Guohong Zhou, Xuan Ji, Zhiming Kang, Juan Li, Min Yuan, Xiaoling Ning, Zhaoxia Zhang, XingYu Ma, Yanpeng Cheng, Hong Li, Qin Ma, Hong Li, Lijun Zhao, Wenjing Lei, Bin Sun, Jianguo Xu
Frontiers in Microbiology.2022;[Epub] CrossRef
Metagenomic profiling of ocular surface microbiome changes in Demodex blepharitis patients
Yana Fu, Jie Wu, Dandan Wang, Tiankun Li, Xinwei Shi, Lu Li, Minying Zhu, Zuhui Zhang, Xinxin Yu, Qi Dai
Frontiers in Cellular and Infection Microbiology.2022;[Epub] CrossRef
Comparison of the ocular surface microbiota between thyroid-associated ophthalmopathy patients and healthy subjects
Xuan Ji, Kui Dong, Ji Pu, Jing Yang, Zhaoxia Zhang, Xiaoling Ning, Qin Ma, Zhiming Kang, Jianguo Xu, Bin Sun
Frontiers in Cellular and Infection Microbiology.2022;[Epub] CrossRef
Microbiological Characteristics of Ocular Surface Associated With Dry Eye in Children and Adolescents With Diabetes Mellitus
Zhangling Chen, Yan Jia, Ying Xiao, Qiurong Lin, Yu Qian, Zhaoyu Xiang, Lipu Cui, Xinran Qin, Shuli Chen, Chenhao Yang, Haidong Zou
Investigative Opthalmology & Visual Science.2022; 63(13): 20. CrossRef
Analysis of Conjunctival Sac Microbiome in Dry Eye Patients With and Without Sjögren's Syndrome
Hang Song, Kang Xiao, Zhengyu Chen, Qin Long
Frontiers in Medicine.2022;[Epub] CrossRef
Bacteria and Dry Eye: A Narrative Review
Yuchen Wang, Yi Ding, Xiaodan Jiang, Jiarui Yang, Xuemin Li
Journal of Clinical Medicine.2022; 11(14): 4019. CrossRef
Eye Make-up Products and Dry Eye Disease: A Mini Review
Mazyar Yazdani, Katja Benedikte Prestø Elgstøen, Tor Paaske Utheim
Current Eye Research.2022; 47(1): 1. CrossRef
The Role of the Ocular Surface Microbiome (OSM) in Diseases of the Anterior Segment and Ocular Surface
Kara M. Cavuoto, Angela Y. Zhu
Current Ophthalmology Reports.2022; 10(4): 179. CrossRef
Effects of Sodium Hyaluronate Eye Drops With or Without Preservatives on Ocular Surface Bacterial Microbiota
Yanlin Zhong, Xie Fang, Xuemei Wang, Yu-An Lin, Huping Wu, Cheng Li
Frontiers in Medicine.2022;[Epub] CrossRef
Ocular surface microbiota: Ophthalmic infectious disease and probiotics
Ming-Cheng Chiang, Edward Chern
Frontiers in Microbiology.2022;[Epub] CrossRef
The Effect of Topical Anesthetics on 16S Ribosomal Ribonucleic Acid Amplicon Sequencing Results in Ocular Surface Microbiome Research
Heleen Delbeke, Ingele Casteels, Marie Joossens
Translational Vision Science & Technology.2022; 11(3): 2. CrossRef
Shotgun metagenomic sequencing analysis of ocular surface microbiome in Singapore residents with mild dry eye
Louis Tong, Florentin Constancias, Aihua Hou, Song Lin Chua, Daniela I. Drautz-Moses, Stephan Christoph Schuster, Liang Yang, Rohan B. H. Williams, Staffan Kjelleberg
Frontiers in Medicine.2022;[Epub] CrossRef
Characterization of Conjunctival Sac Microbiome from Patients with Allergic Conjunctivitis
Hang Song, Kang Xiao, Hanyi Min, Zhengyu Chen, Qin Long
Journal of Clinical Medicine.2022; 11(4): 1130. CrossRef
Neutrophil Extracellular Traps (NETs) in Ocular Diseases: An Update
Jia Zeng, Min Wu, Yamei Zhou, Manhui Zhu, Xiaojuan Liu
Biomolecules.2022; 12(10): 1440. CrossRef
Temporal impacts of topical ceftazidime and tobramycin-vancomycin mixtures on the ocular surface microbiota in rabbits
Ran Xue, Qinghua Liu, Jingwei Li, Jinliang Jiang, Yan Zong, Xiuping Liu, Kaili Wu
Experimental Eye Research.2022; 220: 109098. CrossRef
Updates in diagnostics, treatments, and correlations between oral and ocular manifestations of Sjogren's syndrome
Hassaam S. Choudhry, Shayan Hosseini, Hannaan S. Choudhry, Mahnaz Fatahzadeh, Reena Khianey, Mohammad H. Dastjerdi
The Ocular Surface.2022; 26: 75. CrossRef
Ocular Surface Microbiota in Contact Lens Users and Contact-Lens-Associated Bacterial Keratitis
Jasmine Andersson, Josef K. Vogt, Marlene D. Dalgaard, Oluf Pedersen, Kim Holmgaard, Steffen Heegaard
Vision.2021; 5(2): 27. CrossRef
Ocular surface response of two preservative-free cylcosporine A emulsion eye drops in a mouse model of dry eye
Philippe Daull, Takashi Nagano, Emilie Gros, Laurence Feraille, Stefano Barabino, Jean-Sébastien Garrigue
Current Eye Research.2021; 46(8): 1096. CrossRef
Comparison of the Ocular Microbiomes of Dry Eye Patients With and Without Autoimmune Disease
Yun Qi, Yong Wan, Tianhui Li, Ming Zhang, Yu Song, Yaguang Hu, Yining Sun, Li Li
Frontiers in Cellular and Infection Microbiology.2021;[Epub] CrossRef
Ocular surface microbiota in patients with aqueous tear-deficient dry eye
Jasmine Andersson, Josef K. Vogt, Marlene D. Dalgaard, Oluf Pedersen, Kim Holmgaard, Steffen Heegaard
The Ocular Surface.2021; 19: 210. CrossRef
Current knowledge on the human eye microbiome: a systematic review of available amplicon and metagenomic sequencing data
Heleen Delbeke, Saif Younas, Ingele Casteels, Marie Joossens
Acta Ophthalmologica.2021; 99(1): 16. CrossRef
Ocular Surface Microbiota in Diabetic Patients With Dry Eye Disease
Zhang Zhang, Xinrong Zou, Wenwen Xue, Pei Zhang, Shanshan Wang, Haidong Zou
Investigative Opthalmology & Visual Science.2021; 62(12): 13. CrossRef
Demodex Infection Changes Ocular Surface Microbial Communities, in Which Meibomian Gland Dysfunction May Play a Role
Xiaotian Liang, Yingli Li, Ke Xiong, Shuze Chen, Zhenhao Li, Zhihan Zhang, Zhaoxia Xia, Guoguo Yi, Min Fu
Ophthalmology and Therapy.2021; 10(3): 601. CrossRef
The ocular surface immune system through the eyes of aging
Jeremias G. Galletti, Cintia S. de Paiva
The Ocular Surface.2021; 20: 139. CrossRef
Safety and Tolerability of an Eye Drop Based on 0.6% Povidone–Iodine Nanoemulsion in Dry Eye Patients
Giovanni William Oliverio, Rosaria Spinella, Elisa Imelde Postorino, Leandro Inferrera, Emanuela Aragona, Pasquale Aragona
Journal of Ocular Pharmacology and Therapeutics.2021; 37(2): 90. CrossRef
The ocular microbiome and microbiota and their effects on ocular surface pathophysiology and disorders
Pasquale Aragona, Christophe Baudouin, Jose M. Benitez del Castillo, Elisabeth Messmer, Stefano Barabino, Jesus Merayo-Lloves, Francoise Brignole-Baudouin, Leandro Inferrera, Maurizio Rolando, Rita Mencucci, Maria Rescigno, Stefano Bonini, Marc Labetoulle
Survey of Ophthalmology.2021; 66(6): 907. CrossRef
Differences in the eyelid and buccal microbiome of glaucoma patients receiving long-term administration of prostaglandin analog drops
Su-Ho Lim, Jong Hoon Shin, Ji-Woong Lee, Young Lee, Je Hyun Seo
Graefe's Archive for Clinical and Experimental Ophthalmology.2021; 259(10): 3055. CrossRef
Ocular Microbiota and Intraocular Inflammation
Jing Jing Li, Sanjun Yi, Lai Wei
Frontiers in Immunology.2020;[Epub] CrossRef

First
Prev
Page of 1
Next
Last

Search