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Carbohydrate metabolism genes dominant in a subtropical marine mangrove ecosystem revealed by metagenomics analysis
Huaxian Zhao , Bing Yan , Shuming Mo , Shiqing Nie , Quanwen Li , Qian Ou , Bo Wu , Gonglingxia Jiang , Jinli Tang , Nan Li , Chengjian Jiang
J. Microbiol. 2019;57(7):575-586.   Published online June 27, 2019
DOI: https://doi.org/10.1007/s12275-019-8679-5
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  • 20 Web of Science
  • 20 Crossref
AbstractAbstract
Mangrove sediment microorganisms play a vital role in the energy transformation and element cycling in marine wetland ecosystems. Using metagenomics analysis strategy, we compared the taxonomic structure and gene profile of the mangrove and non-mangrove sediment samples at the subtropical estuary in Beibu Gulf, South China Sea. Proteobacteria, Bacteroidetes, and Firmicutes were the most abundant bacterial phyla. Archaeal family Methanosarcinaceae and bacterial genera Vibrio and Dehalococcoides were significantly higher in the mangrove sediments than in the nonmangrove sediments. Functional analysis showed that “Carbohydrate metabolism” was the most abundant metabolic category. The feature of carbohydrate-active enzymes (CZs) was analyzed using the Carbohydrate-Active EnZymes Database. The significant differences of CZs between mangrove and non-mangrove sediments, were attributed to the amounts of polyphenol oxidase (EC 1.10.3.-), hexosyltransferase (EC 2.4.1.-), and β-N-acetylhexosaminidase (EC 3.2.1.52), which were higher in the mangrove sediment samples. Principal component analysis indicated that the microbial community and gene profile between mangrove and non-mangrove sediments were distinct. Redundancy analysis showed that total organic carbon is a significant factor that affects the microbial community and gene distribution. The results indicated that the mangrove ecosystem with massive amounts of organic carbon may promote the richness of carbohydrate metabolism genes and enhance the degradation and utilization of carbohydrates in the mangrove sediments.

Citations

Citations to this article as recorded by  
  • Habitat variations of sediment microbial community structure and functions and the influential environmental factors in a Ramsar protected wetland in South China
    Kit-Ling Lam, Nora Fung-Yee Tam, Steven Jing-Liang Xu, Wing-Yin Mo, Yuet-Tung Tse, Kaze King-Yip Lai, Ping-Lung Chan, Fred Wang-Fat Lee
    Marine Pollution Bulletin.2024; 209: 117166.     CrossRef
  • Unraveling the role of bacterial communities in mangrove habitats under the urban influence, using a next-generation sequencing approach
    Mayukhmita Ghose, Ashutosh Shankar Parab, Cathrine Sumathi Manohar, Deepika Mohanan, Ashwini Toraskar
    Journal of Sea Research.2024; 198: 102469.     CrossRef
  • Living in mangroves: a syntrophic scenario unveiling a resourceful microbiome
    Marcele Laux, Luciane Prioli Ciapina, Fabíola Marques de Carvalho, Alexandra Lehmkuhl Gerber, Ana Paula C. Guimarães, Moacir Apolinário, Jorge Eduardo Santos Paes, Célio Roberto Jonck, Ana Tereza R. de Vasconcelos
    BMC Microbiology.2024;[Epub]     CrossRef
  • Metagenomic 16S rRNA analysis and predictive functional profiling revealed intrinsic organohalides respiration and bioremediation potential in mangrove sediment
    Sultan M. Alsharif, Mohamed Ismaeil, Ali M. Saeed, Wael S. El-Sayed
    BMC Microbiology.2024;[Epub]     CrossRef
  • Novosphingobium album sp. nov., Novosphingobium organovorum sp. nov. and Novosphingobium mangrovi sp. nov. with the organophosphorus pesticides degrading ability isolated from mangrove sediments
    Wenjin Hu, Zhe Li, Haisheng Ou, Xiaochun Wang, Qiaozhen Wang, Zhanhua Tao, Shushi Huang, Yuanlin Huang, Guiwen Wang, Xinli Pan
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Taxonomy and anticancer potential of Streptomyces niphimycinicus sp. nov. against nasopharyngeal carcinoma cells
    Yiying Huang, Wenjin Hu, Shushi Huang, Jiemei Chu, Yushan Liang, Zhanhua Tao, Guiwen Wang, Junlian Zhuang, Zhe Zhang, Xiaoying Zhou, Xinli Pan
    Applied Microbiology and Biotechnology.2023; 107(20): 6325.     CrossRef
  • Screening of marine sediment-derived microorganisms and their bioactive metabolites: a review
    Hongli Yao, Shuangping Liu, Tiantian Liu, Dongliang Ren, Qilin Yang, Zhilei Zhou, Jian Mao
    World Journal of Microbiology and Biotechnology.2023;[Epub]     CrossRef
  • Novosphingobium beihaiensis sp. nov., a novel pesticide-tolerant bacterium isolated from mangrove sediments
    Wenjin Hu, Yiying Huang, Yingjing Liu, Xiaoying Zhou, Shushi Huang, Jiemei Chu, Xinli Pan
    Antonie van Leeuwenhoek.2023; 116(11): 1151.     CrossRef
  • Mycolicibacterium aurantiacum sp. nov. and Mycolicibacterium xanthum sp. nov., two novel actinobacteria isolated from mangrove sediments
    Xinli Pan, Zhe Li, Shushi Huang, Yuanlin Huang, Qiaozhen Wang, Zhanhua Tao, Wenjin Hu
    International Journal of Systematic and Evolutionary Microbiology.2022;[Epub]     CrossRef
  • Role of calcium and magnesium on dramatic physiological and anatomical responses in tomato plants
    Ayshah A. ALRASHIDI, Haifa Abdulaziz Sakit ALHAITHLOUL, Mona H. SOLIMAN, Mohamed S. ATTIA, Salah M. ELSAYED, Mohamed M. ALI , Ahmed M. SADEK, Marwa A. FAKHR
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  • Metagenomic analysis of microbial communities and antibiotic resistance genes in spoiled household chemicals
    Gang Zhou, Hong-bing Tao, Xia Wen, Ying-si Wang, Hong Peng, Hui-zhong Liu, Xiu-jiang Yang, Xiao-mo Huang, Qing-shan Shi, Xiao-bao Xie
    Chemosphere.2022; 291: 132766.     CrossRef
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    Anwesha Ghosh, Ratul Saha, Punyasloke Bhadury
    PeerJ.2022; 10: e13169.     CrossRef
  • Diversity, metabolism and cultivation of archaea in mangrove ecosystems
    Cui-Jing Zhang, Yu-Lian Chen, Yi-Hua Sun, Jie Pan, Ming-Wei Cai, Meng Li
    Marine Life Science & Technology.2021; 3(2): 252.     CrossRef
  • Thermohalobaculum xanthum gen. nov., sp. nov., a moderately thermophilic bacterium isolated from mangrove sediment
    Xinli Pan, Zhe Li, Fei Li, Yuanlin Huang, Qiaozhen Wang, Shushi Huang, Wenjin Hu, Mingguo Jiang
    Antonie van Leeuwenhoek.2021; 114(11): 1819.     CrossRef
  • 16S rRNA gene amplicon-based metagenomic analysis of bacterial communities in the rhizospheres of selected mangrove species from Mida Creek and Gazi Bay, Kenya
    Edith M. Muwawa, Chinedu C. Obieze, Huxley M. Makonde, Joyce M. Jefwa, James H. P. Kahindi, Damase P. Khasa, Marco Fusi
    PLOS ONE.2021; 16(3): e0248485.     CrossRef
  • Microbial enrichment and meta-omics analysis identify CAZymes from mangrove sediments with unique properties
    Douglas Antonio Alvaredo Paixão, Geizecler Tomazetto, Victoria Ramos Sodré, Thiago A. Gonçalves, Cristiane Akemi Uchima, Fernanda Büchli, Thabata Maria Alvarez, Gabriela Felix Persinoti, Márcio José da Silva, Juliano Bragatto, Marcelo Vizoná Liberato, Joã
    Enzyme and Microbial Technology.2021; 148: 109820.     CrossRef
  • Metagenomic analysis of microbial communities continuously exposed to Bisphenol A in mangrove rhizosphere and non-rhizosphere soils
    Tianli Tong, Ruili Li, Minwei Chai, Qian Wang, Yuyin Yang, Shuguang Xie
    Science of The Total Environment.2021; 792: 148486.     CrossRef
  • Acuticoccus mangrovi sp. nov., with an antibacterial property, isolated from mangrove sediment
    Zhe Li, Wenjin Hu, Shushi Huang, Yuanlin Huang, Fei Li, Qiaozhen Wang, Zhanhua Tao, Xinli Pan
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Extraordinary diversity of viruses in deep‐sea sediments as revealed by metagenomics without prior virion separation
    Xiaowei Zheng, Wang Liu, Xin Dai, Yaxin Zhu, Jinfeng Wang, Yongqiang Zhu, Huajun Zheng, Ying Huang, Zhiyang Dong, Wenbin Du, Fangqing Zhao, Li Huang
    Environmental Microbiology.2021; 23(2): 728.     CrossRef
  • Genomic and Experimental Investigations of Auriscalpium and Strobilurus Fungi Reveal New Insights into Pinecone Decomposition
    Panmeng Wang, Jianping Xu, Gang Wu, Tiezhi Liu, Zhu L. Yang
    Journal of Fungi.2021; 7(8): 679.     CrossRef
Research Support, Non-U.S. Gov't
Microbial communities inhabiting oil-contaminated soils from two major oilfields in Northern China: Implications for active petroleum-degrading capacity
Weimin Sun , Yiran Dong , Pin Gao , Meiyan Fu , Kaiwen Ta , Jiwei Li
J. Microbiol. 2015;53(6):371-378.   Published online May 30, 2015
DOI: https://doi.org/10.1007/s12275-015-5023-6
  • 59 View
  • 0 Download
  • 36 Crossref
AbstractAbstract
Although oilfields harbor a wide diversity of microorganisms with various metabolic potentials, our current knowledge about oil-degrading bacteria is limited because the vast majority of oil-degrading bacteria remain uncultured. In the present study, microbial communities in nine oil-contaminated soils collected from Daqing and Changqing, two of the largest oil fields in China, were characterized through highthroughput sequencing of 16S rRNA genes. Bacteria related to the phyla Proteobacteria and Actinobacteria were dominant in four and three samples, respectively. At the genus level, Alkanindiges, Arthrobacter, Pseudomonas, Mycobacterium, and Rhodococcus were frequently detected in nine soil samples. Many of the dominant genera were phylogenetically related to the known oil-degrading species. The correlation between physiochemical parameters within the microbial communities was also investigated. Canonical correspondence analysis revealed that soil moisture, nitrate, TOC, and pH had an important impact in shaping the microbial communities of the hydrocarbon-contaminated soil. This study provided an in-depth analysis of microbial communities in oilcontaminated soil and useful information for future bioremediation of oil contamination.

Citations

Citations to this article as recorded by  
  • Spatial distribution characteristics and degradation mechanism of microorganisms in n-hexadecane contaminated vadose zone
    Kexue Han, Rui Zuo, Xiaoyuan Cao, Donghui Xu, Xiao Zhao, Jian Shi, Zhenkun Xue, Yunxiang Xu, Ziyi Wu, Jinsheng Wang
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    Environmental Science and Pollution Research.2023; 30(15): 43245.     CrossRef
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