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- Genome Sequencing Highlights the Plant Cell Wall Degrading Capacity of Edible Mushroom Stropharia rugosoannulata
- Mengpei Guo , Xiaolong Ma , Yan Zhou , Yinbing Bian , Gaolei Liu , Yingli Cai , Tianji Huang , Hongxia Dong , Dingjun Cai , Xueji Wan , Zhihong Wang , Yang Xiao , Heng Kang
- J. Microbiol. 2023;61(1):83-93. Published online February 1, 2023
- DOI: https://doi.org/10.1007/s12275-022-00003-7
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- 6 Web of Science
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Abstract
- The basidiomycetous edible mushroom Stropharia rugosoannulata has excellent nutrition, medicine, bioremediation, and biocontrol properties. S. rugosoannulata has been widely and easily cultivated using agricultural by-products showing strong lignocellulose degradation capacity. However, the unavailable high-quality genome information has hindered the research on gene function and molecular breeding of S. rugosoannulata. This study provided a high-quality genome assembly and annotation from S. rugosoannulata monokaryotic strain QGU27 based on combined Illumina-Nanopore data. The genome size was about 47.97 Mb and consisted of 20 scaffolds, with an N50 of 3.73 Mb and a GC content of 47.9%. The repetitive sequences accounted for 17.41% of the genome, mostly long terminal repeats (LTRs). A total of 15,726 coding gene sequences were putatively identified with the BUSCO score of 98.7%. There are 142 genes encoding plant cell wall degrading enzymes (PCWDEs) in the genome, and 52, 39, 30, 11, 8, and 2 genes related to lignin, cellulose, hemicellulose, pectin, chitin, and cutin degradation, respectively. Comparative genomic analysis revealed that S. rugosoannulata is superior in utilizing aldehyde-containing lignins and is possible to utilize algae during the cultivation.
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Citations
Citations to this article as recorded by
- Analysis of Gene Regulatory Network and Transcription Factors in Different Tissues of the Stropharia rugosoannulata Fruiting Body
Jia Lu, Jing Yan, Na Lu, Jiling Song, Jiayao Lin, Xiaohua Zhou, Xuebing Ying, Zhen Li, Zufa Zhou, Fangjie Yao
Journal of Fungi.2025; 11(2): 123. CrossRef - Evaluation of Genetic Diversity and Agronomic Traits of Germplasm Resources of Stropharia rugosoannulata
Miao Gu, Qiang Chen, Yan Zhang, Yongchang Zhao, Li Wang, Xiangli Wu, Mengran Zhao, Wei Gao
Horticulturae.2024; 10(3): 213. CrossRef - Molecular Profiling of Rice Straw Degradability Discrepancy in Stropharia rugosoannulata Core Germplasm
Wenbing Gong, Yuyu Zeng, Xinru Li, Zhidong Zhao, Nan Shen, Yan Zhou, Yinbing Bian, Yang Xiao
Journal of Agricultural and Food Chemistry.2024; 72(45): 25379. CrossRef - Genome assembly of M. spongiola and comparative genomics of the genus Morchella provide initial insights into taxonomy and adaptive evolution
Qing Meng, Zhanling Xie, Hongyan Xu, Jing Guo, Qingqing Peng, Yanyan Li, Jiabao Yang, Deyu Dong, Taizhen Gao, Fan Zhang
BMC Genomics.2024;[Epub] CrossRef
- Analysis of Gene Regulatory Network and Transcription Factors in Different Tissues of the Stropharia rugosoannulata Fruiting Body
- Porphyromonas gingivalis-Derived Lipopolysaccharide-Mediated Activation of MAPK Signaling Regulates Inflammatory Response and Differentiation in Human Periodontal Ligament Fibroblasts
- Taegun Seo , Seho Cha , Tae-Il Kim , Hee-Jung Park , Jeong-Soon Lee , Kyung Mi Woo
- J. Microbiol. 2012;50(2):311-319. Published online April 27, 2012
- DOI: https://doi.org/10.1007/s12275-012-2146-x
- 32 View
- 0 Download
- 28 Crossref
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Abstract
- Porphyromonas gingivalis (P.g.), which is a potential pathogen for periodontal diseases, contains lipopolysaccharide (LPS), and this endotoxin stimulates a variety of cellular responses. At present, P.g.-derived LPS-induced cellular responses in human periodontal ligament fibroblasts (PDLFs) are not well characterized. Here, we demonstrate that P.gderived LPS regulates inflammatory responses, apoptosis and differentiation in PDLFs. Interleukin-6 (IL-6) and -8 (IL-8) were effectively upregulated by treatment of P.g.-derived LPS, and we confirmed apoptosis markers including elevated cytochrome c levels, active caspase-3 and morphological change in the presence of P.g.-derived LPS. Moreover, when PDLFs were cultured with differentiation media, P.g.- derived LPS reduced the expression of differentiation marker genes, as well as reducing alkaline phosphatase (ALP) activity and mineralization. P.g.-derived LPS-mediated these cellular responses were effectively abolished by treatment of mitogen-activated protein kinase (MAPK) inhibitors. Taken together, our results suggest that P.g.-derived LPS regulates several cellular responses via activation of MAPK signaling pathways in PDLFs.
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Citations
Citations to this article as recorded by- Evaluation of the role of mitofusin‐1 and mitofusin‐2 in periodontal disease
Ömer Alperen Kırmızıgül, Arife Sabanci, Faruk Dişli, Sedat Yıldız, Michael R. Milward, Kübra Aral
Journal of Periodontology.2024; 95(1): 64. CrossRef - Programmed cell death of periodontal ligament cells
Wei He, Yu Fu, Song Yao, Lan Huang
Journal of Cellular Physiology.2023; 238(8): 1768. CrossRef - Porphyromonas gingivalis lipopolysaccharide promotes T-hel per17 cell differentiation by upregulating Delta-like ligand 4 expression on CD14+ monocytes
Chi Zhang, Chenrong Xu, Li Gao, Xiting Li, Chuanjiang Zhao
PeerJ.2021; 9: e11094. CrossRef - Gene expression profiles of mitochondria-endoplasmic reticulum tethering in human gingival fibroblasts in response to periodontal pathogens
Kübra Aral, Michael R. Milward, Paul R. Cooper
Archives of Oral Biology.2021; 128: 105173. CrossRef - Ginsenoside Rb3 Inhibits Pro-Inflammatory Cytokines via MAPK/AKT/NF-κB Pathways and Attenuates Rat Alveolar Bone Resorption in Response to Porphyromonas gingivalis LPS
Minmin Sun, Yaoting Ji, Zhen Li, Rourong Chen, Shuhui Zhou, Chang Liu, Minquan Du
Molecules.2020; 25(20): 4815. CrossRef - Low-intensity pulsed ultrasound upregulates osteogenesis under inflammatory conditions in periodontal ligament stem cells through unfolded protein response
Han Li, Yuejia Deng, Minmin Tan, Ge Feng, Yunchun Kuang, Jie Li, Jinlin Song
Stem Cell Research & Therapy.2020;[Epub] CrossRef - Effect of ScLL and 15d-PGJ2 on viability and cytokine release in LPS-stimulated fibroblasts: an in vitro study
Manuella Verdinelli de Paula REIS, Gabriela Leite de SOUZA, Priscilla Barbosa Ferreira SOARES, Maria Aparecida de SOUZA, Carlos José SOARES, Camilla Christian Gomes MOURA
Brazilian Oral Research.2020;[Epub] CrossRef - TLR activation inhibits the osteogenic potential of human periodontal ligament stem cells through Akt signaling in a Myd88‐ or TRIF‐dependent manner
Yunyan Zhu, Qian Li, Yanheng Zhou, Weiran Li
Journal of Periodontology.2019; 90(4): 400. CrossRef - Low‐intensity pulsed ultrasound promotes bone morphogenic protein 9‐induced osteogenesis and suppresses inhibitory effects of inflammatory cytokines on cellular responses via Rho‐associated kinase 1 in human periodontal ligament fibroblasts
Joji Kusuyama, Toshiaki Nakamura, Tomokazu Ohnishi, Brent G. Albertson, Yukari Ebe, Nahoko Eiraku, Kazuyuki Noguchi, Tetsuya Matsuguchi
Journal of Cellular Biochemistry.2019; 120(9): 14657. CrossRef - Periodontal bacterial supernatants modify differentiation, migration and inflammatory cytokine expression in human periodontal ligament stem cells
Liza L. Ramenzoni, Giancarlo Russo, Maria D. Moccia, Thomas Attin, Patrick R. Schmidlin, Alain Haziot
PLOS ONE.2019; 14(7): e0219181. CrossRef - Necrostatin-1 promotes ectopic periodontal tissue like structure regeneration in LPS-treated PDLSCs
Bingbing Yan, Hongmei Zhang, Taiqiang Dai, Yongchun Gu, Xinyu Qiu, Cheng Hu, Yan Liu, Kewen Wei, Dehua Li, Motohiro Komaki
PLOS ONE.2018; 13(11): e0207760. CrossRef - TGF-β2 downregulates osteogenesis under inflammatory conditions in dental follicle stem cells
Soyoun Um, Joo-Hee Lee, Byoung-Moo Seo
International Journal of Oral Science.2018;[Epub] CrossRef - Periostin promotes migration and osteogenic differentiation of human periodontal ligament mesenchymal stem cells via the Jun amino‐terminal kinases (JNK) pathway under inflammatory conditions
Yi Tang, Lin Liu, Pei Wang, Donglei Chen, Ziqiang Wu, Chunbo Tang
Cell Proliferation.2017;[Epub] CrossRef - Osteogenic potential of periodontal ligament stem cells are unaffected after exposure to lipopolysaccharides
Mayra Laino ALBIERO, Bruna Rabelo AMORIM, Márcio Zaffalon CASATI, Enilson Antonio SALLUM, Francisco Humberto NOCITI JUNIOR, Karina Gonzales SILVÉRIO
Brazilian Oral Research.2017;[Epub] CrossRef - Periodontal-Derived Mesenchymal Cell Sheets Promote Periodontal Regeneration in Inflammatory Microenvironment
Shujuan Guo, Jian Kang, Baohui Ji, Weihua Guo, Yi Ding, Yafei Wu, Weidong Tian
Tissue Engineering Part A.2017; 23(13-14): 585. CrossRef - Hypoxia enhances the effect of lipopolysaccharide-stimulated IL-1β expression in human periodontal ligament cells
Jittima Pumklin, Kanokporn Bhalang, Prasit Pavasant
Odontology.2016; 104(3): 338. CrossRef - Effect of lectin (ScLL) on fibroblasts stimulated with LPS - an in vitro study
Manuella Verdinelli de Paula REIS, Camilla Christian Gomes MOURA, Marcus Vinicius da SILVA, Maria Aparecida de SOUZA, Priscilla Barbosa Ferreira SOARES, Carlos José SOARES
Brazilian Oral Research.2016;[Epub] CrossRef - Leukocyte Inclusion within a Platelet Rich Plasma-Derived Fibrin Scaffold Stimulates a More Pro-Inflammatory Environment and Alters Fibrin Properties
Eduardo Anitua, Mar Zalduendo, María Troya, Sabino Padilla, Gorka Orive, Paula A. da Costa Martins
PLOS ONE.2015; 10(3): e0121713. CrossRef - The negative feedback regulation of microRNA-146a in human periodontal ligament cells after Porphyromonas gingivalis lipopolysaccharide stimulation
Shao-Yun Jiang, Dong Xue, Yu-Feng Xie, Dong-Wang Zhu, Yun-Yun Dong, Cong-Cong Wei, Jia-Yin Deng
Inflammation Research.2015; 64(6): 441. CrossRef - IL-1R/TLR2 through MyD88 Divergently Modulates Osteoclastogenesis through Regulation of Nuclear Factor of Activated T Cells c1 (NFATc1) and B Lymphocyte-induced Maturation Protein-1 (Blimp1)
Zhihong Chen, Lingkai Su, Qingan Xu, Jenny Katz, Suzanne M. Michalek, Mingwen Fan, Xu Feng, Ping Zhang
Journal of Biological Chemistry.2015; 290(50): 30163. CrossRef - Effects of Streptococcus thermophilus on volatile sulfur compounds produced by Porphyromonas gingivalis
Sung-Hoon Lee, Dong-Heon Baek
Archives of Oral Biology.2014; 59(11): 1205. CrossRef - Porphyromonas gingivalis LPS inhibits osteoblastic differentiation and promotes pro-inflammatory cytokine production in human periodontal ligament stem cells
Hirohito Kato, Yoichiro Taguchi, Kazuya Tominaga, Makoto Umeda, Akio Tanaka
Archives of Oral Biology.2014; 59(2): 167. CrossRef - Effect of epithelial rests of Malassez’ cells on RANKL mRNA expression and ALP activity by periodontal ligament fibroblasts stimulated with sonicated Porphyromonas gingivalis in vitro
Kenichi Matsuzaka, Eitoyo Kokubu, Takashi Inoue
Journal of Oral and Maxillofacial Surgery, Medicine, and Pathology.2014; 26(4): 554. CrossRef - Effects of Enterococcus faecalis lipoteichoic acid on receptor activator of nuclear factor‐κB ligand and osteoprotegerin expression in periodontal ligament fibroblasts
L. Zhao, J. Chen, L. Cheng, X. Wang, J. Du, F. Wang, Z. Peng
International Endodontic Journal.2014; 47(2): 163. CrossRef - Apoptosis: an underlying factor for accelerated periodontal disease associated with diabetes in rats
Mustafa Tunalı, Tamer Ataoğlu, Ilhami Çelik
Clinical Oral Investigations.2014; 18(7): 1825. CrossRef - Reducing the bioactivity of Tannerella forsythia lipopolysaccharide by Porphyromonas gingivalis
Young-Jae Kim, Sung-Hoon Lee
Journal of Microbiology.2014; 52(8): 702. CrossRef - Bambusae Caulis in Taeniam modulates neuroprotective and anti-neuroinflammatory effects in hippocampal and microglial cells via HO-1- and Nrf-2-mediated pathways
HYE WON EOM, SUN YOUNG PARK, YOUNG HUN KIM, SU JIN SEONG, MEI LING JIN, EUN YEON RYU, MIN JU KIM, SANG JOON LEE
International Journal of Molecular Medicine.2012; 30(6): 1512. CrossRef - Baicalin Downregulates Porphyromonas gingivalis Lipopolysaccharide-Upregulated IL-6 and IL-8 Expression in Human Oral Keratinocytes by Negative Regulation of TLR Signaling
Wei Luo, Cun-Yu Wang, Lijian Jin, Anne Wertheimer
PLoS ONE.2012; 7(12): e51008. CrossRef
- Evaluation of the role of mitofusin‐1 and mitofusin‐2 in periodontal disease
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