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- Effects of Continuous Straw Returning on Soil Functional Microorganisms and Microbial Communities
- Yunpeng Guan , Meikang Wu , Songhao Che , Shuai Yuan , Xue Yang , Siyuan Li , Ping Tian , Lei Wu , Meiying Yang , Zhihai Wu
- J. Microbiol. 2023;61(1):49-62. Published online January 26, 2023
- DOI: https://doi.org/10.1007/s12275-022-00004-6
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- 18 Web of Science
- 21 Crossref
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Abstract
- This study examined the changes in soil enzymatic activity, microbial carbon source metabolic diversity, and straw decomposition rates in paddy fields treated with 1, 2, or 3 years of straw returning (SR1–SR3). The soil’s ability to decompose straw and cellulolytic bacteria increased with the number of treatment years (1: 31.9% vs. 2: 43.9% vs. 3: 51.9%, P < 0.05). The numbers of Azotobacter, Nitrobacteria, cellulolytic bacteria, and inorganic phosphate bacteria increased progressively with the numbers of straw returning years. Cellulolytic bacteria and inorganic phosphate bacteria were significantly positively correlated with the decomposition rate (r = 0.783 and r = 0.375, P < 0.05). Based on 16S sequencing results, straw returning improved the microbial diversity of paddy soils by increasing unclassified bacteria and keeping dominant soil microorganism populations unchanged. The relative importance of individual microbial taxa was compared using random forest models. Proteobacteria, ammoniating bacteria, and potassium dissolving bacteria contributed to peroxidase activity. The significant contributors to phosphate monoesterase were Acidobacteriota, Desulfobacterota, ammoniating bacteria, cellulolytic bacteria, and potassium-dissolving bacteria. Proteobacteria, ammoniating bacteria, cellulolytic bacteria, and potassium-dissolving bacteria contributed to urease activity. Desulfobacterota, ammoniating bacteria, cellulolytic bacteria, and potassium-dissolving bacteria contributed to the neutral invertase activity. In conclusion, soil microbial community structure and function were affected within 2 years of straw returning, which was driven by the combined effects of soil organic carbon, available nitrogen, available potassium, and pH. With elapsing straw returning years, soil properties interacted with soil microbial communities, and a healthier soil micro-ecological environment would form.
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Citations
Citations to this article as recorded by
- The role of tillage practices in wheat straw decomposition and shaping the associated microbial communities in Endocalcaric– Epigleyic Cambisol soil
Arman Shamshitov, Gražina Kadžienė, Francesco Pini, Skaidrė Supronienė
Biology and Fertility of Soils.2025; 61(2): 211. CrossRef - Impact of straw returning on soil ecology and crop yield: A review
Vincent Ninkuu, Zhixin Liu, Aizhi Qin, Yajie Xie, Xiao Song, Xuwu Sun
Heliyon.2025; 11(2): e41651. CrossRef - The different pathways of microbial regulation of organic carbon turnover in the topsoil and subsoil of coastal saline soil after long-term stubble return and subsoiling
Xunya Su, Le Zhang, Hao Meng, Jiaxue Zhao, Han Wang, Lunxiao Shang, Qiyuan Guo, Yupeng Xing, Xianliang Song, Xuezhen Sun, Xiaopei Zhang, Xiaoli Tian, Lili Mao
Applied Soil Ecology.2025; 208: 105970. CrossRef - Long-Term Effects of Potassium Fertilization and Wheat Straw Return on Cropland Soil Fertility and Microorganisms in the Qinghai–Tibet Plateau
Tingting Xu, Rong Zhang, Yang Zhang, Xiaojun Wang, Zhengpeng Li, Yajun Gao
Agronomy.2025; 15(3): 742. CrossRef - The effects of straw return and tillage depth on soil respiration and soil organic carbon: Implications for improving the sustainability of agro-ecosystems in China
Yanjun Zhang, Bruce Osborne, Shuina Dang, Junliang Zou
European Journal of Agronomy.2025; 168: 127630. CrossRef - Synergistic Effects of Rice Straw Return and Nitrogen Fertilizer on Rhizosphere Bacterial Communities and Soil Fertility
Nasita Rahman Borny, Golam Mohammod Mostakim, Asif Raihan, Md Shoaibur Rahman
Journal of Soil, Plant and Environment.2024; : 41. CrossRef - Vertical differences in carbon metabolic diversity and dominant flora of soil bacterial communities in farmlands
Bufan Zheng, Zhipeng Xiao, Jiaqi Liu, Yi Zhu, Kaifeng Shuai, Xiaye Chen, Yongjun Liu, Ruiwen Hu, Guangjue Peng, Junlin Li, Yichao Hu, Zan Su, Ming Fang, Juan Li
Scientific Reports.2024;[Epub] CrossRef - Microbial Network Complexity Helps to Reduce the Deep Migration of Chemical Fertilizer Nitrogen Under the Combined Application of Varying Irrigation Amounts and Multiple Nitrogen Sources
Taotao Chen, Erping Cui, Yanbo Zhang, Ge Gao, Hao You, Yurun Tian, Chao Hu, Yuan Liu, Tao Fan, Xiangyang Fan
Agriculture.2024; 14(12): 2311. CrossRef - Effects of Combined Peanut Shell and Biochar Application on Soil Nutrient Content, CO2 Emission, and Bacterial Community in Dryland Red Soil of Southern China
Xinyi Yu, Qian Wei, Meng Na, Chunjie Tian, Shangqi Xu, Jihai Zhou
Journal of Soil Science and Plant Nutrition.2024; 24(1): 219. CrossRef - Long-term in situ straw returning increased soil aggregation and aggregate associated organic carbon fractions in a paddy soil
Jiaren Liu, Xuehai Wang, Hu Zhang, Yifei Lu, Yusef Kianpoor Kalkhajeh, Hongxiang Hu, Jieying Huang
Heliyon.2024; 10(11): e32392. CrossRef - Agricultural ecosystems rather than fertilization strategies drives structure and composition of the ureolytic microbial functional guilds
Na Lv, Ping Gong, Hao Sun, Xiangxin Sun, Zhiguang Liu, Xueshi Xie, Yan Xue, Yuchao Song, Kaikuo Wu, Tingting Wang, Zhijie Wu, Lili Zhang
Journal of Environmental Management.2024; 372: 123148. CrossRef - Effects of Burial Furrow Parameters on Soil Water Movement under Subsurface Stalk Composite Pipe Irrigation
Feng Wu, Xuefang Feng, Xuemei Liu, Di Wu, Songmei Zai, Linbao Liu
Agriculture.2024; 14(2): 287. CrossRef - Improving Soil Quality and Crop Yields Using Enhancing Sustainable Rice Straw Management Through Microbial Enzyme Treatments
Van-Phuc Dinh, Hoai-An Tran-Vu, Thanh Tran, Bich-Ngoc Duong, Ngoc-Mai Dang-Thi, Hoai-Luan Phan-Van, Tuan-Kiet Tran, Van-Hieu Huynh, Thi-Phuong-Tu Nguyen, Thanh Q Nguyen
Environmental Health Insights.2024;[Epub] CrossRef - Improvement of Saline–Alkali Soil and Straw Degradation Efficiency in Cold and Arid Areas Using Klebsiella sp. and Pseudomonas sp.
Xiaoyu Zhao, Xiaofang Yu, Julin Gao, Jiawei Qu, Qinggeer Borjigin, Tiantian Meng, Dongbo Li
Agronomy.2024; 14(11): 2499. CrossRef - Successive Years of Rice Straw Return Increased the Rice Yield and Soil Nutrients While Decreasing the Greenhouse Gas Intensity
Meikang Wu, Min Nuo, Zixian Jiang, Ruiyao Xu, Hongcheng Zhang, Xiao Lu, Liqun Yao, Man Dou, Xu Xing, Xin Meng, Dongchao Wang, Xiaoshuang Wei, Ping Tian, Guan Wang, Zhihai Wu, Meiying Yang
Plants.2024; 13(17): 2446. CrossRef - The effects of straw return on soil bacterial diversity and functional profiles: A meta-analysis
Miaomiao Zhang, Pengfei Dang, Bart Haegeman, Xiaoqing Han, Xiaofan Wang, Xuan Pu, Xiaoliang Qin, Kadambot H.M. Siddique
Soil Biology and Biochemistry.2024; 195: 109484. CrossRef - Dissolved Organic Matters, an Intermediary of the Microbial Community and Potassium Fertilizers in A. carmichaeli rhizosphere Soil
Fei Xia, Meng Fu, Chen Liu, Yulong Li, Yi Qiang, Ding He, Guoyan Zhang, Langjun Cui
Journal of Soil Science and Plant Nutrition.2024; 24(3): 5472. CrossRef - Effects of Straw and Nitrogenous Fertilizers on the Soil Aggregate Stability and Quality in Subtropical Regions of China
Jia Yi Yang, Shahbaz Atta Tung, Jin Ting Xu, Yan Qiong Pan, Li Yang, Xun Bo Zhou
Journal of Soil Science and Plant Nutrition.2024; 24(3): 5988. CrossRef - Improved Straw Decomposition Products Promote Peanut Growth by Changing Soil Chemical Properties and Microbial Diversity
Yaxin Liu, Meng Wu, Jia Liu, Daming Li, Xiaoli Liu, Ling Chen, Xi Guo, Ming Liu
Sustainability.2024; 16(16): 7096. CrossRef - Effects of Different Tillage Measures Combined with Straw Returning on Soil Enzyme Activity and Microbial Community Structure and Diversity
Sa Xiao, Bing Li, Tingting Zhang, Jianzhu Luo, Jie Wang, Xiangqian Zhang, Juan Li, Dejian Zhang
Agriculture.2024; 15(1): 56. CrossRef - Straw Returning Measures Enhance Soil Moisture and Nutrients and Promote Cotton Growth
Min Tang, Rui Liu, Zhenhai Luo, Chao Zhang, Jiying Kong, Shaoyuan Feng
Agronomy.2023; 13(7): 1850. CrossRef
- The role of tillage practices in wheat straw decomposition and shaping the associated microbial communities in Endocalcaric– Epigleyic Cambisol soil
- Gastrointestinal microbiota alteration induced by Mucor circinelloides in a murine model
- Katherine D. Mueller , Hao Zhang , Christian R. Serrano , R. Blake Billmyre , Eun Young Huh , Philipp Wiemann , Nancy P. Keller , Yufeng Wang , Joseph Heitman , Soo Chan Lee
- J. Microbiol. 2019;57(6):509-520. Published online May 27, 2019
- DOI: https://doi.org/10.1007/s12275-019-8682-x
- 50 View
- 0 Download
- 19 Web of Science
- 18 Crossref
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Abstract
- Mucor circinelloides is a pathogenic fungus and etiologic agent of mucormycosis. In 2013, cases of gastrointestinal illness after yogurt consumption were reported to the US FDA, and the producer found that its products were contaminated with Mucor. A previous study found that the Mucor strain isolated from an open contaminated yogurt exhibited virulence in a murine systemic infection model and showed that this strain is capable of surviving passage through the gastrointestinal tract of mice. In this study, we isolated another Mucor strain from an unopened yogurt that is closely related but distinct from the first Mucor strain and subsequently examined if Mucor alters the gut microbiota in a murine host model. DNA extracted from a ten-day course of stool samples was used to analyze the microbiota in the gastrointestinal tracts of mice exposed via ingestion of Mucor spores. The bacterial 16S rRNA gene and fungal ITS1 sequences obtained were used to identify taxa of each kingdom. Linear regressions revealed that there are changes in bacterial and fungal abundance in the gastrointestinal tracts of mice which ingested Mucor. Furthermore, we found an increased abundance of the bacterial genus Bacteroides and a decreased abundance of the bacteria Akkermansia muciniphila in the gastrointestinal tracts of exposed mice. Measurements of abundances show shifts in relative levels of multiple bacterial and fungal taxa between mouse groups. These findings suggest that exposure of the gastrointestinal tract to Mucor can alter the microbiota and, more importantly, illustrate an interaction between the intestinal mycobiota and bacteriota. In addition, Mucor was able to induce increased permeability in epithelial cell monolayers in vitro, which might be indicative of unstable intestinal barriers. Understanding how the gut microbiota is shaped is important to understand the basis of potential methods of treatment for gastrointestinal illness. How the gut microbiota changes in response to exposure, even by pathogens not considered to be causative agents of food-borne illness, may be important to how commercial food producers prevent and respond to contamination of products aimed at the public. This study provides evidence that the fungal microbiota, though understudied, may play an important role in diseases of the human gut.
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Citations
Citations to this article as recorded by- Towards a green climate: Production of slag–red brick waste-based geopolymer mingled with WO3 nanoparticles with bio-mechanical achievements
Mostafa.A. Sayed, S.M.A. El-Gamal, Alaa Mohsen, M. Ramadan, Mona M. Wetwet, Noha M. Deghiedy, Ahmed E. Swilem, M.M. Hazem
Construction and Building Materials.2024; 413: 134909. CrossRef - Interactions among microorganisms open up a new world for anti‐infectious therapy
Yejia Zhang, Hanchi Zhang, Tian Xu, Lingbing Zeng, Fadi Liu, Xiaotian Huang, Qiong Liu
The FEBS Journal.2024; 291(8): 1615. CrossRef - Different fungal signatures in ALD and MAFLD
Daya Zhang, Qi Wang, Da Li, Chen Chen, Yanting Lv, Shimei Huang, Fan Zeng, Xianfeng Huang, Fengjiao Mao, Feihu Bai
Frontiers in Microbiology.2024;[Epub] CrossRef - Interaction between intestinal mycobiota and microbiota shapes lung inflammation
Youxia Wang, Fang He, Bingnan Liu, Xiaoyan Wu, Ziyi Han, Xuefei Wang, Yuexia Liao, Jielin Duan, Wenkai Ren
iMeta.2024;[Epub] CrossRef - Characterisation of the surface growth of Mucor circinelloides in cheese agar media using predictive mathematical models
Martina Koňuchová, Agáta Boháčiková, Ľubomír Valík
Heliyon.2024; 10(9): e30812. CrossRef - Landscape of the gut mycobiome dynamics during pregnancy and its relationship with host metabolism and pregnancy health
Yuanqing Fu, Wanglong Gou, Ping Wu, Yuwei Lai, Xinxiu Liang, Ke Zhang, Menglei Shuai, Jun Tang, Zelei Miao, Jieteng Chen, Jiaying Yuan, Bin Zhao, Yunhaonan Yang, Xiaojuan Liu, Yayi Hu, An Pan, Xiong-Fei Pan, Ju-Sheng Zheng
Gut.2024; 73(8): 1302. CrossRef - Mapping the human oral and gut fungal microbiota in patients with metabolic dysfunction-associated fatty liver disease
Chenguang Niu, Ye Tu, Qiaoqiao Jin, Zhanyi Chen, Keyong Yuan, Min Wang, Pengfei Zhang, Junyuan Luo, Hao Li, Yueyi Yang, Xiaoyu Liu, Mengying Mao, Ting Dong, Wenduo Tan, Xuchen Hu, Yihuai Pan, Lili Hou, Rui Ma, Zhengwei Huang
Frontiers in Cellular and Infection Microbiology.2023;[Epub] CrossRef - Exploration of mechanical performance, porous structure, and self-cleaning behavior for hydrothermally cured sustainable cementitious composites containing de-aluminated metakaolin waste and TiO2 nanoparticles
M. Ramadan, Mohamed Kohail, Aref A. Abadel, Yousef R. Alharbi, Ahmed M. Soliman, Alaa Mohsen
Journal of Materials Research and Technology.2023; 25: 3998. CrossRef - Evaluation of Mechanical Performance, Porous Structure and Self-Cleaning Behavior for Hydrothermally Cured Cementitious Composites Containing De-Aluminated Metakaolin Waste and Tio2 Nanoparticles
Alaa Mohsen, Mohamed Kohail, Aref abadel, Yousef Alharbi, Moncef L. Nehdi, Mohammed Ramadan
SSRN Electronic Journal .2022;[Epub] CrossRef - The role of gut mycobiome in health and diseases
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Therapeutic Advances in Gastroenterology.2021;[Epub] CrossRef - Mycobiome and Cancer: What Is the Evidence?
Natalia Vallianou, Dimitris Kounatidis, Gerasimos Socrates Christodoulatos, Fotis Panagopoulos, Irene Karampela, Maria Dalamaga
Cancers.2021; 13(13): 3149. CrossRef - Caenorhabditis elegans as an Infection Model for Pathogenic Mold and Dimorphic Fungi: Applications and Challenges
Chukwuemeka Samson Ahamefule, Blessing C. Ezeuduji, James C. Ogbonna, Anene N. Moneke, Anthony C. Ike, Cheng Jin, Bin Wang, Wenxia Fang
Frontiers in Cellular and Infection Microbiology.2021;[Epub] CrossRef - Crossing Kingdoms: How the Mycobiota and Fungal-Bacterial Interactions Impact Host Health and Disease
William Santus, Jason R. Devlin, Judith Behnsen, Karen M. Ottemann
Infection and Immunity.2021;[Epub] CrossRef - A Novel Resistance Pathway for Calcineurin Inhibitors in the Human-Pathogenic Mucorales Mucor circinelloides
Sandeep Vellanki, R. Blake Billmyre, Alejandra Lorenzen, Micaela Campbell, Broderick Turner, Eun Young Huh, Joseph Heitman, Soo Chan Lee, Michael Lorenz
mBio.2020;[Epub] CrossRef - From Birth and Throughout Life: Fungal Microbiota in Nutrition and Metabolic Health
William D. Fiers, Irina Leonardi, Iliyan D. Iliev
Annual Review of Nutrition.2020; 40(1): 323. CrossRef - Understanding Mucormycoses in the Age of “omics”
Alexandra Y. Soare, Tonya N. Watkins, Vincent M. Bruno
Frontiers in Genetics.2020;[Epub] CrossRef - Eukaryotic and Prokaryotic Microbiota Interactions
Aly Kodio, Estelle Menu, Stéphane Ranque
Microorganisms.2020; 8(12): 2018. CrossRef - Drug-Resistant Epimutants Exhibit Organ-Specific Stability and Induction during Murine Infections Caused by the Human Fungal Pathogen Mucor circinelloides
Zanetta Chang, Joseph Heitman, Antonio Di Pietro
mBio.2019;[Epub] CrossRef
- Towards a green climate: Production of slag–red brick waste-based geopolymer mingled with WO3 nanoparticles with bio-mechanical achievements
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