Journal Article
- Intestinal Lactobacillus community structure and its correlation with diet of Southern Chinese elderly subjects§
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Yuanyuan Pan , Da-Wen Sun , Quanyang Li
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J. Microbiol. 2016;54(9):594-601. Published online August 31, 2016
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DOI: https://doi.org/10.1007/s12275-016-6131-7
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Abstract
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This study aimed to investigate the relationship between the
intestinal Lactobacillus species and diet of elderly subjects in
a longevity area in Southern China. Healthy elderly subjects
ranging from 80 to 99 years old were respectively selected
from the regions of Bama and Nanning, Guangxi, China.
The nested polymerase chain reaction and denaturing gradient
gel electrophoresis (PCR-DGGE) technology was used
to analyze the intestinal Lactobacillus community structure.
Results
showed that Weissella confusa, L. mucosae, L. crispatus,
L. salivarius, and L. delbrueckii were the representative
Lactobacillus of elderly subjects. Among them, L. crispatus
and L. delbrueckii were the dominant Lactobacillus of
all species. In comparison to Nanning elderly subjects, the
detection frequencies of W. confusa and L. salivarius were
significantly increased in Bama elderly subjects (P < 0.01),
whereas L. mucosae was significantly decreased (P < 0.01).
Interestingly, it was also found that there were 4 kinds of
representative Lactobacillus, which were significantly correlated
with dietary fiber. W. confusa (P < 0.01) and L. salivarius
(P < 0.05) were significantly positively correlated with
the intake of dietary fiber, while L. mucosae (P < 0.01) and
L. crispatus (P < 0.05) were significantly negatively correlated
with the intake of dietary fiber, respectively. Results confirmed
that different diets had obvious effects on the intestinal Lactobacillus
community structure of elderly subjects in Southern
China, which may provide a certain theoretical basis for the
elderly’s healthy food strategic design and probiotics product
development.
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Citations
Citations to this article as recorded by

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Research Support, Non-U.S. Gov'ts
- Detection of Hepatitis A Virus from Oyster by Nested PCR Using Efficient Extraction and Concentration Method
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Duwoon Kim , Seok-Ryel Kim , Ki-Sung Kwon , Ji-Won Lee , Myung-Joo Oh
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J. Microbiol. 2008;46(4):436-440. Published online August 31, 2008
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DOI: https://doi.org/10.1007/s12275-008-0131-1
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37
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23
Scopus
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Abstract
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The molecular methods using polymerase chain reaction have been proposed as useful tools for the identification of viral pathogens in food and water. However, the PCR-based methods are highly dependent on the methods of virus concentration and nucleic acid purification due to the low sensitivity of PCR in the presence of PCR inhibitors. We developed TPTT [tris elution buffer-PEG-TRIzol-poly(dT) magnetic bead] protocol in order to detect hepatitis A virus (HAV) inoculated in oyster digestive glands. The detection limit of HAV precipitated with zirconium hydroxide was 105 fold less sensitive in a nested PCR than that precipitated the HAV supernatant twice with PEG/NaCl (16% polyethylene glycol 6,000, 0.525 M NaCl) in a 1:2 (v/v) ratio, which provided an efficient detection of 0.0148 PFU/g from approximately 0.05 g of oyster homogenate. This method is efficient for potential use in the detection of HAV from shellfish and is more sensitive than most currently published tests.
- PCR-Based Detection of Mycoplasma Species
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Hyeran Sung , Seung Hye Kang , Yoon jin Bae , Jin Tae Hong , Youn Bok Chung , Chong-Kil Lee , Sukgil Song
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J. Microbiol. 2006;44(1):42-49.
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DOI: https://doi.org/2338 [pii]
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Abstract
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In this study, we describe our newly-developed sensitive two-stage PCR procedure for the detection
of 13 common mycoplasmal contaminants (M. arthritidis, M. bovis, M. fermentans, M. genitalium,
M. hominis, M. hyorhinis, M. neurolyticum, M. orale, M. pirum, M. pneumoniae, M. pulmonis,
M. salivarium, U. urealyticum). For primary amplification, the DNA regions encompassing the
16S and 23S rRNA genes of 13 species were targeted using general mycoplasma primers. The primary
PCR products were then subjected to secondary nested PCR, using two different primer
pair sets, designed via the multiple alignment of nucleotide sequences obtained from the 13 mycoplasmal
species. The nested PCR, which generated DNA fragments of 165-353 bp, was found to
be able to detect 1-2 copies of the target DNA, and evidenced no cross-reactivity with the genomic
DNA of related microorganisms or of human cell lines, thereby confirming the sensitivity and specificity
of the primers used. The identification of contaminated species was achieved via the performance
of restriction fragment length polymorphism (RFLP) coupled with Sau3AI digestion.
The results obtained in this study furnish evidence suggesting that the employed assay system
constitutes an effective tool for the disagnosis of mycoplasmal contamination in cell culture
systems.
- Molecular Survey of Latent Pseudorabies Virus Infection in Nervous Tissues of Slaughtered Pigs by Nested and Real-time PCR
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Hyun A Yoon , Seong Kug Eo , Abi George Aleyas , Seong Ok Park , John Hwa Lee , Joon Seok Chae , Jeong Gon Cho , Hee Jong Song
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J. Microbiol. 2005;43(5):430-436.
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DOI: https://doi.org/2279 [pii]
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Abstract
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In this study, the prevalence and quantity of a latent pseudorabies virus (PrV) infection in the nervous tissues of randomly selected pigs was determined via nested and real-time PCR. The nervous tissues, including the trigeminal ganglion (TG), olfactory bulb (OB), and brain stem (BS), were collected from the heads of 40 randomly selected pigs. The majority of the nervous tissues from the selected pigs evidenced a positively amplified band on nested PCR. In particular, nested PCR targeted to the PrV glycoprotein B (gB) gene yielded positive results in all of the BS samples. Nested PCR for either the gE or gG gene produced positive bands in a less number of nervous tissues (57.5% and 42.5%, respectively). Real-time PCR revealed that the examined tissues harbored large copy numbers of latent PrV DNA, ranging between 100.1 and 107.2 (1-1.58x107) copies per 1 g of genomic DNA. Real-time PCR targeted to the PrV gE gene exhibited an accumulated fluorescence of reporter dye at levels above threshold, thereby indicating a higher prevalence than was observed on the nested PCR (100% for BS, 92% for OB, and 85% for TG). These results indicate that a large number of farm-grown pigs are latently infected with a field PrV strain with a variety of copy numbers. This result is similar to what was found in association with the human herpes virus.
- Detection of Marine Birnavirus (MBV) from Rockfish Sebastes schlegeli Using Reverse Transcription and Nested PCR
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Seong-Joon Joh , Doo-Won Kim , Jeong-Ho Kim , Gang-Joon Heo
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J. Microbiol. 2000;38(4):260-264.
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Abstract
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Reverse transcription (RT)-PCR and nested PCR methods (2-step PCR) were tested for their ability to detect marine birnavirus (MBV) in cultured rockfish, Sebastes schlegeli. One set of primers for RT-PCR was designed, based on a gene of infectious pancreatic necrosis virus (IPNV), and another set of primers for nested PCR was designed based on the VP2/NS junction region of MBV. This 2-step PCR method was specific for MBV and sensitivity was heightened when nested PCR was combined to RT-PCR. This 2-step PCR method was useful for detecting MBV not only in diseased fish, but also in asymptomatic fish. These results indicate that this 2-step PCR method is useful for detecting MBV in rockfish.