Journal of Microbiology

Journal Article

Psychroflexus lacisalsi sp. nov., a Moderate Halophilic Bacterium Isolated from a Hypersaline Lake (Hunazoko-Ike) in Antarctica: Hongyan Zhang , Shoko Hosoi-Tanabe , Syuhei Ban , Satoshi Imura; J. Microbiol. 2010;48(2):160-164. Published online May 1, 2010; DOI: https://doi.org/10.1007/s12275-010-0018-9

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Abstract: A novel Gram-negative, aerobic, moderate halophilic, and psychrotolerant bacterium, designated as strain H7T, was isolated from a hypersaline lake located in Skarvsnes, Antarctica. Cells were filaments with varying lengths. Coccoid bodies developed in old cultures. Growth occurred with 0.5-15% (w/v) NaCl (optimum, 5.8-7.0%), at pH 6.0-10.0 (optimum, pH 7.0-8.0), and at 10-28°C (optimum, 25°C). The strain had a G+C content of 34.9 mol%, which is within the range of 32-36 mol% reported for the genus Psychroflexus. Chemotaxonomic data (major respiratory quinone: MK-6; major fatty acids: aC15:0, iC16:0 3-OH, and aC15: 1 A) supported the classification of strain H7T within the genus Psychroflexus. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain H7T should be assigned to the genus Psychroflexus and has a homology with Psychroflexus salinarum (98.2%), P. sediminis (96.1%), P. torquis (95.2%), P. tropicus (95.8%), and P. gondwanense (92.2%). Strain H7 is not identified as P. salinarum because that DNA-DNA hybridization data were 8.5% between strain H7T and P. salinarum. The combination of phylogenetic analysis, DNA-DNA hybridization data, phenotypic characteristics, and chemotaxonomic differences supported the view that strain H7T represents a novel species of the genus Psychroflexus. The name Psychroflexus lacisalsi is proposed, and the type strain is H7T (=JCM 16231T =KACC 14089T).

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Sphingobacterium bambusae sp. nov., Isolated from Soil of Bamboo Plantation: Shengwen Duan , Zhengchu Liu , Xiangyuan Feng , Ke Zheng , Lifeng Cheng; J. Microbiol. 2009;47(6):693-698. Published online February 4, 2010; DOI: https://doi.org/10.1007/s12275-009-0296-2

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A Gram-negative, non-motile, non-spore-forming bacterial strain designated IBFC2009T was isolated from soil of a bamboo plantation. The strain could grow at 11°C~39°C, pH 6.0~9.0, and in the presence of 0~5% NaCl. Based on 16S rRNA gene sequence analysis, Strain IBFC2009T belonged to the genus Sphingobacterium and showed the highest sequence similarity of 94.6% (S. composti T5-12T) with the type strains within the genus. The major fatty acids were summed feature 3 (iso-C15:0 2-OH and/or C16:1 ω7c, 34.4%), iso-C15:0 (22.4%), C16:0 3-OH (15.2%), and iso-C17:0 3-OH (12.8%). The G+C content of the genomic DNA was 41.0 mol%. According to the phenotypic and genotypic characteristics, Strain IBFC2009T should represent a novel species of the genus Sphingobacterium, for which the name Sphingobacterium bambusae sp. nov. is proposed. The type strain is IBFC2009T (=CCTCC AB 209162T =KCTC 22814T).

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Complete genome sequence of the Sphingobacterium bambusae type strain KACC 22910 T
Do-Hyun Kim, Hyorim Choi, Jun Heo, Leighton Pritchard
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Sphingobacterium solani sp. nov., isolated from potato stems
Xinbin Niu, Weiguo Cui, Man Cui, Xiaoxia Zhang, Shuqing Zhang, Bingliang Xu, Miao Gao
International Journal of Systematic and Evolutionary Microbiology .2018; 68(4): 1012. CrossRef
Sphingobacterium griseoflavum sp. nov., isolated from the insect Teleogryllus occipitalis living in deserted cropland
Xiufeng Long, Bo Liu, Shuai Zhang, Yuqin Zhang, Zhigang Zeng, Yongqiang Tian
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Sphingobacterium rhinocerotis sp. nov., isolated from the faeces of Rhinoceros unicornis
Gui-Ding Li, Xiu Chen, Qin-Yuan Li, Fang-Ji Xu, Shu-Mei Qiu, Yi Jiang, Cheng-Lin Jiang
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Whole-Genome Optical Mapping and Finished Genome Sequence of Sphingobacterium deserti sp. nov., a New Species Isolated from the Western Desert of China
Chao Teng, Zhengfu Zhou, István Molnár, Xinna Li, Ran Tang, Ming Chen, Lin Wang, Shiyou Su, Wei Zhang, Min Lin, Patrick CY Woo
PLOS ONE.2015; 10(4): e0122254. CrossRef
Sphingobacterium suaedae sp. nov., isolated from the rhizosphere soil of Suaeda corniculata
Ji-Quan Sun, Min Liu, Xin-Ying Wang, Lian Xu, Xiao-Lei Wu
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Sphingobacterium gobiense sp. nov., isolated from soil of the Gobi Desert
Peng Zhao, Zhengfu Zhou, Ming Chen, Wenna Lin, Wei Zhang, Gehong Wei
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Hao Feng, Yanhua Zeng, Yili Huang
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Shijie Jiang, Ming Chen, Shiyou Su, Mingkun Yang, Aihua Li, Chen Zhang, Min Lin, Wei Zhang, Xuegang Luo
International Journal of Systematic and Evolutionary Microbiology .2014; 64(Pt_1): 248. CrossRef
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Shi Peng, Dong Dan Hong, Yang Bing Xin, Li Ming Jun, Wei Ge Hong
International Journal of Systematic and Evolutionary Microbiology .2014; 64(Pt_11): 3862. CrossRef
Sphingobacterium pakistanensis sp. nov., a novel plant growth promoting rhizobacteria isolated from rhizosphere of Vigna mungo
Iftikhar Ahmed, Muhammad Ehsan, Yeseul Sin, Jayoung Paek, Nauman Khalid, Rifat Hayat, Young H. Chang
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The First Korean Case ofSphingobacterium spiritivorumBacteremia in a Patient with Acute Myeloid Leukemia
Young Rae Koh, Shine Young Kim, Chulhun L Chang, Ho-Jin Shin, Kye-Hyung Kim, Jongyoun Yi
Annals of Laboratory Medicine.2013; 33(4): 283. CrossRef
Sphingobacterium caeni sp. nov., isolated from activated sludge
Li-Na Sun, Jun Zhang, Qing Chen, Jian He, Shun-Peng Li
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The Draft Genome Sequence of Sphingomonas paucimobilis Strain HER1398 ( Proteobacteria ), Host to the Giant PAU Phage, Indicates That It Is a Member of the Genus Sphingobacterium ( B
Richard Allen White, Curtis A. Suttle
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Sphingobacterium cladoniae sp. nov., isolated from lichen, Cladonia sp., and emended description of Sphingobacterium siyangense
Dong-Heon Lee, Jae Seoun Hur, Hyung-Yeel Kahng
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Sphingobacterium hotanense sp. nov., isolated from soil of a Populus euphratica forest, and emended descriptions of Sphingobacterium daejeonense and
Ting Xiao, Xiang He, Gang Cheng, Haiju Kuang, Xiangru Ma, Khayir Yusup, Maryam Hamdun, Abaidulla Gulsimay, Chengxiang Fang, Erkin Rahman
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_3): 815. CrossRef
Sphingobacterium psychroaquaticum sp. nov., a psychrophilic bacterium isolated from Lake Michigan water
Richard A. Albert, Nancy E. Waas, Shawn C. Pavlons, Jamie L. Pearson, Laura Ketelboeter, Ramon Rosselló-Móra, Hans-Jürgen Busse
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_3): 952. CrossRef
Sphingobacterium detergens sp. nov., a surfactant-producing bacterium isolated from soil
Ana M. Marqués, César Burgos-Díaz, Francisco José Aranda, José Antonio Teruel, Àngels Manresa, Antonio Ortiz, Maribel Farfán
International Journal of Systematic and Evolutionary Microbiology .2012; 62(Pt_12): 3036. CrossRef
Sphingobacterium nematocida sp. nov., a nematicidal endophytic bacterium isolated from tobacco
Jie Liu, Ling-Ling Yang, Chuan-Kun Xu, Jia-Qin Xi, Fa-Xiang Yang, Feng Zhou, Yu Zhou, Ming-He Mo, Wen-Jun Li
International Journal of Systematic and Evolutionary Microbiology .2012; 62(Pt_8): 1809. CrossRef
Sphingobacterium lactis sp. nov. and Sphingobacterium alimentarium sp. nov., isolated from raw milk and a dairy environment
Verena S. J. Schmidt, Mareike Wenning, Siegfried Scherer
International Journal of Systematic and Evolutionary Microbiology .2012; 62(Pt_7): 1506. CrossRef
A rapid process of ramie bio-degumming by Pectobacterium sp. CXJZU-120
Zhengchu Liu, Shengwen Duan, Qingxiang Sun, Yuande Peng, Xiangyuan Feng, Ke Zheng, Zhenxiu Hu, Yunxiong Zhang
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Jun Zhang, Jin-Wei Zheng, Byung Cheol Cho, Chung Yeon Hwang, Chengxiang Fang, Jian He, Shun-Peng Li
International Journal of Systematic and Evolutionary Microbiology .2012; 62(Pt_3): 683. CrossRef
Sphingomonas rosea sp. nov. and Sphingomonas swuensis sp. nov., rosy colored β-glucosidase-producing bacteria isolated from soil
Sathiyaraj Srinivasan, Jae-Jin Lee, Myung Kyum Kim
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Sphingomonas humi sp. nov., isolated from soil
Tae Hoo Yi, Chang-Kyun Han, Sathiyaraj Srinivasan, Kang Jin Lee, Myung Kyum Kim
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List of new names and new combinations previously effectively, but not validly, published

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Paenibacillus pinihumi sp. nov., a Cellulolytic Bacterium Isolated from the Rhizosphere of Pinus densiflora: Byung-Chun Kim , Kang Hyun Lee , Mi Na Kim , Eun-Mi Kim , Moon-Soo Rhee , O-Yu Kwon , Kee-Sun Shin; J. Microbiol. 2009;47(5):530-535. Published online October 24, 2009; DOI: https://doi.org/10.1007/s12275-009-0270-z

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Abstract: A novel cellulolytic bacterium, strain S23T, was isolated from the rhizosphere of the pine trees in Daejeon, Republic of Korea. This isolate was Gram-positive, strictly aerobic, rod-shaped, catalase-negative, oxidase- positive, motile by means of peritrichous flagella, and tested positive for alkaline phosphatase, esterase lipase, leucine arylamidase, α-galactosidase, and β-galactosidase activities. The DNA G+C content was 49.5mol%. The main cellular fatty acids were anteiso-C15:0 (51.9%), iso-C16:0 (14.7%), and iso-C15:0 (13.2%). The major isoprenoid quinone was menaquinone 7 (MK-7). Diagnostic diamino acid in the cell-wall peptidoglycan was meso-diaminopimelic acid. Comparative 16S rRNA gene sequence analysis showed that this strain clustered with Paenibacillus species. The 16S rRNA gene sequence similarity values between S23T and other Paenibacillus species were between 89.9% and 95.9%, and S23T was most closely related to Paenibacillus tarimensis SA-7-6T. On the basis of phylogenetic and phenotypic properties of strain S23T, the isolate is considered as a novel species belonging to the genus Paenibacillus. Therefore, the name, Paenibacillus pinihumi sp. nov., is proposed for the rhizosphere isolate; the type strain is S23T (=KCTC 13695T =KACC 14199T =JCM 16419T)

Paenibacillus filicis sp. nov., Isolated from the Rhizosphere of the Fern: Byung-Chun Kim , Mi Na Kim , Kang Hyun Lee , Sun Beom Kwon , Kyung Sook Bae , Kee-Sun Shin; J. Microbiol. 2009;47(5):524-529. Published online October 24, 2009; DOI: https://doi.org/10.1007/s12275-009-0266-8

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Abstract

A Gram-positive and endospore-forming bacterial strain, designated S4T, was isolated from the rhizosphere of ferns in Daejeon, Republic of Korea. This isolate is strictly aerobic, motile, and rod-like in shape, and it is positive for catalase, oxidase, esterase lipase, and β-galactosidase activities. In addition, this strain grows when cultured at temperatures between 15 and 37°C and at pH values ranging from 5.5 to 9.0. The DNA G+C content was determined to be 53.2 mol%. Strain S4T has meso-diaminopimelic acid in the cell-wall peptidoglycan; it also contains menaquinone 7 (MK-7) as the predominant isoprenoid quinone and anteiso-C15:0 (57.5%), iso-C16:0 (11.3%), and C16:0 (9.4%) as the major cellular fatty acids. Phylogenetic analysis based on alignments of the 16S rRNA gene sequence showed that S4T is affiliated with a cluster of strains within the genus Paenibacillaceae and is most closely related to Paenibacillus chinjuensis WN9T, with 96.8% similarity. Based on the phylogenetic and phenotypic characteristics of strain S4T, we believe that this isolate should be distinguished from all type species of the genus Paenibacillus and should thus represent a novel taxon within the genus Paenibacillus. We propose naming this type species Paenibacillus filicis sp. nov. for the rhizosphere isolate; the type strain will be known as S4T (=KCTC 13693T =KACC 14197T =JCM 16417T).

Citations

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Paenibacillus gyeongsangnamensis sp. nov., Isolated from Soil
Hyosun Lee, Dhiraj Kumar Chaudhary, Dong-Uk Kim
Journal of Microbiology and Biotechnology.2024; 34(8): 1636. CrossRef
Paenibacillus puerhi sp. nov., isolated from the rhizosphere soil of Pu-erh tea plants (Camellia sinensis var. assamica)
Rui-Juan Yang, De Zhou, Qiao-Mei Wang, Xing-Hua Wang, Wen-Jie Zhang, Li Zhuang, Xuan-Jun Wang, Liang Yan, Jie Lv, Jun Sheng
Archives of Microbiology.2021; 203(4): 1375. CrossRef
Paenibacillus konkukensis sp. nov., isolated from animal feed
Wan-Taek Im, Kwon-Jung Yi, Sang-Suk Lee, Hyung In Moon, Che Ok Jeon, Dong-Woon Kim, Soo-Ki Kim
International Journal of Systematic and Evolutionary Microbiology.2017; 67(7): 2343. CrossRef
Paenibacillus cucumis sp. nov. isolated from greenhouse soil
Jae-Hyung Ahn, Byoung-chan Kim, Byung-Yong Kim, Soo-Jin Kim, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon
Journal of Microbiology.2014; 52(6): 460. CrossRef
Paenibacillus vulneris sp. nov., isolated from a necrotic wound
Stefanie P. Glaeser, Enevold Falsen, Hans-Jürgen Busse, Peter Kämpfer
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_2): 777. CrossRef
Identification and Characterization of Psychrotolerant Sporeformers Associated with Fluid Milk Production and Processing
Reid A. Ivy, Matthew L. Ranieri, Nicole H. Martin, Henk C. den Bakker, Bruno M. Xavier, Martin Wiedmann, Kathryn J. Boor
Applied and Environmental Microbiology.2012; 78(6): 1853. CrossRef
List of new names and new combinations previously effectively, but not validly, published

International Journal of Systematic and Evolutionary Microbiology .2010; 60(1): 1. CrossRef
Paenibacillus pini sp. nov., a cellulolytic bacterium isolated from the rhizosphere of pine tree
Byung-Chun Kim, Kang Hyun Lee, Mi Na Kim, Eun-Mi Kim, Sung Ran Min, Hyun Soon Kim, Kee-Sun Shin
The Journal of Microbiology.2009; 47(6): 699. CrossRef

Paenibacillus camelliae sp. nov., Isolated from Fermented Leaves of Camellia sinensis: Hyun-Woo Oh , Byung-Chun Kim , Kang Hyun Lee , Do Young Kim , Doo-Sang Park , Hee-Moon Park , Kyung Sook Bae; J. Microbiol. 2008;46(5):530-534. Published online October 31, 2008; DOI: https://doi.org/10.1007/s12275-008-0233-9

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Abstract

A novel bacterium, strain b11s-2T was isolated from Pu’er tea. The isolate was Gram-positive, endosporeforming motile rod that grew at 15~42°C and pH 6.0~10.2. The DNA G+C content was 48.3 mol%, the predominant isoprenoid quinone was MK-7, and the predominant cellular fatty acid was anteiso-C15:0 (54.2%) followed by C16:0 (15.5%) and iso-C16:0 (8.2%). The polar lipid pattern of b11s-2T was characterized by the presence of diphosphatidylglycerol, phosphatidylethanolamine, and phosphatidylglycerol. Phylogenetic analysis based on 16S rRNA gene sequence showed that the strain was affiliated within the Paenibacillaceae. The strain was most closely related to Paenibacillus granivorans A30T, with a similarity of 97.1%. Based on the phylogenetic and phenotypic characteristics of strain b11s-2T, the isolate is thought to represent a novel taxon in the genus Paenibacillus. The name Paenibacillus camelliae sp. nov. is proposed for the fermented tea isolate; the type strain is b11s-2T (= KCTC 13220T= CECT 7361T).

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Production of theophylline via aerobic fermentation of pu-erh tea using tea-derived fungi
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Biodegradation of caffeine by whole cells of tea-derived fungi Aspergillus sydowii, Aspergillus niger and optimization for caffeine degradation
Binxing Zhou, Cunqiang Ma, Hongzhen Wang, Tao Xia
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Paenibacillus oryzae sp. nov., isolated from rice roots
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International Journal of Systematic and Evolutionary Microbiology .2016; 66(12): 5000. CrossRef
Paenibacillus puernese sp. nov., a β-glucosidase-producing bacterium isolated from Pu’er tea
Dan-Dan Wang, Yeon-Ju Kim, Van-An Hoang, Ngoc-Lan Nguyen, Priyanka Singh, Chao Wang, Deok Chun-Yang
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Hyun-Sook Kim, Sathiyaraj Srinivasan, Sang-Seob Lee
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Ming Zhao, Dong-lian Zhang, Xiao-qin Su, Shuang-mei Duan, Jin-qiong Wan, Wen-xia Yuan, Ben-ying Liu, Yan Ma, Ying-hong Pan
Scientific Reports.2015;[Epub] CrossRef
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International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_11): 3806. CrossRef
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Paenibacillus guangzhouensis sp. nov., an Fe(III)- and humus-reducing bacterium from a forest soil
Jibing Li, Qin Lu, Ting Liu, Shungui Zhou, Guiqin Yang, Yong Zhao
International Journal of Systematic and Evolutionary Microbiology .2014; 64(Pt_11): 3891. CrossRef
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