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NOTE] Analysis of the Complete Nucleotide Sequence of a White Spot Syndrome Virus Isolated from Pacific White Shrimp
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HOME > J. Microbiol > Volume 51(5); 2013 > Article
Research Support, Non-U.S. Gov't
NOTE] Analysis of the Complete Nucleotide Sequence of a White Spot Syndrome Virus Isolated from Pacific White Shrimp
Choong Yee Chai 1, Jangmi Yoon 1, Yong Seok Lee 2, Young Bong Kim 3, Tae-Jin Choi 1
Journal of Microbiology 2013;51(5):695-699
DOI: https://doi.org/10.1007/s12275-013-3171-0
Published online: September 14, 2013
1Department of Microbiology, Pukyong National University, Busan 608-737, Republic of Korea, 2Department of Life Science and Biotechnology, Soonchunhyang University, Asan 336-745, Republic of Korea, 3Department Animal Biotechnology, Konkuk University, Seoul 143-701, Republic of Korea1Department of Microbiology, Pukyong National University, Busan 608-737, Republic of Korea, 2Department of Life Science and Biotechnology, Soonchunhyang University, Asan 336-745, Republic of Korea, 3Department Animal Biotechnology, Konkuk University, Seoul 143-701, Republic of Korea
Corresponding author:  Tae-Jin Choi , Tel: +82-51-629-5617, 
Received: 26 March 2013   • Accepted: 26 April 2013
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Abstract

The fourth complete genome sequence of the white spot syndrome virus (WSSV) from Pacific white shrimp (Litopenaeus vannamei) isolated from Korea (WSSV-KR) was determined. The genome is composed of 295,884 bp encompassing 515 open reading frames (ORFs) among which 90 showed no sequence homology with any known protein in BLAST searches. The remaining 425 ORFs encode functional proteins including enzymes for nucleic acid metabolism, DNA replication and transcription, and several major structural proteins. Dot plot and linear comparisons of WSSV Korean strain with other WSSV isolates showed overall similarity but with some areas of sequence difference and one large deletion area.

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    NOTE] Analysis of the Complete Nucleotide Sequence of a White Spot Syndrome Virus Isolated from Pacific White Shrimp
    J. Microbiol. 2013;51(5):695-699.   Published online September 14, 2013
    DOI: https://doi.org/10.1007/s12275-013-3171-0
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