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Investigation of Bottleneck Enzyme Through Flux Balance Analysis to Improve Glycolic Acid Production in Escherichia coli.
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Investigation of Bottleneck Enzyme Through Flux Balance Analysis to Improve Glycolic Acid Production in Escherichia coli.
Jungyeon Kim1,2,3, Ye-Bin Kim4, Ju-Young Kim4, Min-Ju Seo5,6, Soo-Jin Yeom4,5,6, Bong Hyun Sung1,7,8
Journal of Microbiology 2024;62(11):1023-1033
DOI: https://doi.org/10.1007/s12275-024-00175-4
Published online: October 28, 2024
1Synthetic Biology Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
2Graduate School of International Agricultural Technology, Seoul National University, Pyeongchang-gun, Gangwon-do, 25354, Republic of Korea.
3Institute of Food Industrialization, Institutes of Green Bioscience and Technology, Seoul National University, Pyeongchang-gun, Gangwon-do, 25354, Republic of Korea.
4School of Biological Sciences and Biotechnology, Graduate School, Chonnam National University, Gwangju, 61186, Republic of Korea.
5Institute of Synthetic Biology for Carbon Neutralization, Chonnam National University, Gwangju, 61186, Republic of Korea.
6School of Biological Sciences and Technology , Chonnam National University, Gwangju, 61186, Republic of Korea.
7Department of Biosystems and Bioengineering, School of Biotechnology, Korea University of Science and Technology (UST), Daejeon, 34113, Republic of Korea.
8Graduate School of Engineering Biology, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
Corresponding author:  Soo-Jin Yeom,
Email: soojin258@jnu.ac.kr
Bong Hyun Sung,
Email: bhsung@kribb.re.kr

Jungyeon Kim and Ye-Bin Kim contributed equally to this study as co-first authors.

Received: 23 July 2024   • Revised: 20 September 2024   • Accepted: 22 September 2024
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Amid rising environmental concerns, attempts have been made to produce glycolic acid (GA) using microbial processes with renewable carbon resources instead of using chemicals. The Dahms pathway for GA production uses xylose as a substrate and consists of relatively simple enzymatic steps. However, employing it leads to a decrease in cell growth and GA productivity. Systematically identifying and addressing metabolic bottlenecks in the Dahms pathway are essential for efficient glycolic acid (GA) production have not yet been performed. Through metabolic flux balance analysis, we found that insufficient aldehyde dehydrogenase (AldA) activity lowers GA production and negatively affects cell growth due to reduced energy production. Thus, we discovered a novel AldA isolated from Buttiauxella agrestis (BaAldA) demonstrated a 1.69-fold lower KM and a 1.49-fold higher turnover rate (kcat/KM) than AldA from Escherichia coli (EcAldA). GA production in E. coli harboring BaAldA was 1.59 times higher than in the original strain. Fed-batch fermentation of E. coli harboring BaAldA produced 22.70 g/L GA with a yield of 0.497 g/gxylose (98.2% of the theoretical maximum yield in the Dahms pathway), showing a higher final yield for GA than previously reported in E. coli. Our novel BaAldA enzyme shows great potential for the production of GA using microorganisms or enzymes. Furthermore, our approach to identifying metabolic bottlenecks using flux balance analysis could be utilized to enhance the microbial production of various desirable products in future studies.

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    Investigation of Bottleneck Enzyme Through Flux Balance Analysis to Improve Glycolic Acid Production in Escherichia coli.
    J. Microbiol. 2024;62(11):1023-1033.   Published online October 28, 2024
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