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- Volume 48(5); October 2010
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Research Support, Non-U.S. Gov'ts
- Genomic Diversity of Legionella pneumophila Serogroup 1 from Environmental Water Sources and Clinical Specimens Using Pulsed-Field Gel Electrophoresis (PFGE) from 1985 to 2007, Korea
- Hae Kyung Lee , Yeon Ho Kang , Jae Yon Yu
- J. Microbiol. 2010;48(5):547-553. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0031-z
- 175 View
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- 3 Scopus
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Abstract
PDF - The molecular typing of 202 Legionella pneumophila sg 1 isolates obtained from environmental water sources and clinical specimens from 1985 to 2007 was conducted using pulsed-field gel electrophoresis (PFGE). In this study, a total of 212 isolates were grouped into 35 different PFGE types and Type 1 was the predominant type, accounting for 28.7% in PFGE types. Type 1 and Type 8 were observed continuously from 1985 to 2007. In the analysis of the distribution of PFGE types in six geographic regions (Seoul-Incheon, Gangwon, Chungcheong, Gyeongsang, Jeolla, and Jeju), Type 1 was predominant throughout four regions except for Jeolla and Jeju, and Type 6 was observed in four regions except two regions (Gangwon and Jeju). Six clinical isolates belonged to PFGE Type 1, Type 6, Type 9, and Type 15. Type 1 among these types, was isolated from 3 patients with confirmed nosocomial infection at the hospital and Type 6, Type 9, and Type 15 were isolated 3 patients with suspected community-acquired infection. Type R, PFGE pattern of L. pneumophila sg 1 (ATCC 33152, Philadelphia-1), was not observed in the isolates evaluated in this study. Therefore, our results suggest that PFGE Type 1 was very prevalent in the environmental and clinical isolates in Korea. Type 1 was distributed continuously for many years throughout Korea.
- Detection of Xanthomonas arboricola pv. pruni by PCR Using Primers Based on DNA Sequences Related to the hrp Genes
- So Yeon Park , Young Sun Lee , Young Jin Koh , Jae-Sun Hur , Jae Sung Jung
- J. Microbiol. 2010;48(5):554-558. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0072-3
- 354 View
- 1 Download
- 14 Crossref
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Abstract
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- Efficient control of Xanthomonas arboricola pv. pruni, the causal agent of bacterial spot on stone fruit, requires a sensitive and reliable diagnostic tool. A PCR detection method that utilizes primers to target the hrp gene cluster region was developed in this study. The nucleotide sequence of the PCR product amplified with primers specific for the hrp region of the xanthomonads and genomic DNA of X. arboricola pv. pruni was determined, and the sequence was aligned with that of X. campestris pv. campestris, which was obtained from the GenBank database. On the basis of the sequence of the amplified hrp region, a PCR primer set of XapF/R specific to X. arboricola pv. pruni was designed. This primer set yielded a 243-bp product from the genomic DNA of X. aboricola pv. pruni strains, but no products from other 21 strains of Xanthomonas or from two epiphytic bacterial species. Southern blot hybridization with the probe derived from the PCR product with the primer set and X. aboricola pv. pruni DNA confirmed the PCR results. The Xap primer system was successfully applied to detect the pathogen from infected peach fruits. When it was applied in field samples, the primer set was proved as a reliable diagnostic tool for specific detection of X. aboricola pv. pruni from peach orchards.
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Citations
Citations to this article as recorded by
- Advancing Sustainable Management of Bacterial Spot of Peaches: Insights into Xanthomonas arboricola pv. pruni Pathogenicity and Control Strategies
Nanami Sakata, Yasuhiro Ishiga
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- Advancing Sustainable Management of Bacterial Spot of Peaches: Insights into Xanthomonas arboricola pv. pruni Pathogenicity and Control Strategies
- Diversity of Endophytic Bacteria in Ginseng and Their Potential for Plant Growth Promotion
- Regupathy Thamizh Vendan , Young Joon Yu , Sun Hee Lee , Young Ha Rhee
- J. Microbiol. 2010;48(5):559-565. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0082-1
- 418 View
- 0 Download
- 132 Crossref
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Abstract
PDF
- Endophytic bacteria have been found in virtually every plant studied, where they colonize the internal tissues of their host plant and can form a range of different beneficial relationships. The diversity of bacterial endophytes associated with ginseng plants of varying age levels in Korea was investigated. Fifty-one colonies were isolated from the interior of ginseng stems. Although a mixed composition of endophyte communities was recovered from ginseng based on the results of 16S rDNA analysis, bacteria of the genus Bacillus and Staphylococcus dominated in 1-year-old and 4-year-old plants, respectively. Phylogenetic analysis revealed four clusters: Firmicutes, Actinobacteria, α-Proteobacteria, and γ-Proteobacteria, with Firmicutes being predominant. To evaluate the plant growth promoting activities, 18 representative isolates were selected. Amplification of nifH gene confirmed the presence of diazotrophy in only two isolates. Half of the isolates solubilized mineral phosphate. Except four, all the other endophytic isolates produced significant amounts of indole acetic acid in nutrient broth. Iron sequestering siderophore production was detected in seven isolates. Isolates E-I-3 (Bacillus megaterium), E-I-4 (Micrococcus luteus), E-I-8 (B. cereus), and E-I-20 (Lysinibacillus fusiformis) were positive for most of the plant growth promoting traits, indicating their role in growth promotion of ginseng.
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- Young Tae Kim , Myoungho Cho , Je Yong Jeong , Hyang Burm Lee , Seung Bum Kim
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- DOI: https://doi.org/10.1007/s12275-010-0126-6
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- Microbial communities in hot pepper (Capsicum annuum L.) cultivation fields under different cultivation methods were investigated by terminal restriction fragment length polymorphism (T-RFLP) analysis. Rhizosphere soil and leaf samples were collected from control, conventional and nature-friendly cultivation fields between May and July, 2009. Two Bacillus subtilis strains were applied to nature-friendly cultivation fields as biocontrol agents during the sampling period. Relative abundances of bacteria and plant pathogenic fungi related T-RFs were also measured to monitor the effect of biocontrol agents on potential plant pathogenic fungi. In the principal component analysis (PCA) based on T-RFLP profiles, the microbial communities from rhizosphere soil samples in July, including bacteria and fungi, showed distinct difference between nature-friendly cultivation fields and other cultivation fields. However, there was no correlation between cultivation methods and leaf microbial communities at any sampling period. Changes in the abundance of bacteria related T-RF in the rhizosphere of nature-friendly cultivation fields were observed clearly two months after application of biocontrol agent, while the abundance of plant pathogenic fungi related T-RFs significantly decreased.
- Bacterial Diversity in the Sediment from Polymetallic Nodule Fields of the Clarion-Clipperton Fracture Zone
- Chun-Sheng Wang , Li Liao , Hong-Xiang Xu , Xue-Wei Xu , Min Wu , Li-Zhong Zhu
- J. Microbiol. 2010;48(5):573-585. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0151-5
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- The Clarion-Clipperton Fracture Zone (CCFZ) is located in the northeastern equatorial Pacific and contains abundant polymetallic nodules. To investigate its bacterial diversity, four libraries of 16S rRNA genes were constructed from sediments of four stations in different areas of the CCFZ. In total, 313 clones sequenced from the 4 libraries were assigned into 14 phylogenetic groups and 1 group of 28 unclassified bacteria. High bacterial diversity was predicted by the rarefaction analysis. The most dominant group overall was Proteobacteria, but there was variation in each library: Gammaproteobacteria was the most dominant group in two libraries, E2005-01 and ES0502, while Alphaproteobacteria and Deltaproteobacteria were the most dominant groups in libraries EP2005-03 and WS0505, respectively. Seven groups, including Alphaproteobacteria, Gammaproteobacteria, Deltaproteobacteria, Betaproteobacteria, Acidobacteria, Actinobacteria, and Bacteroidetes, were common to all four libraries. The remaining minor groups were distributed in libraries with different patterns. Most clones sequenced in this study were clustered with uncultured bacteria obtained from the environment, such as the ocean crust and marine sediment, but only distantly related to isolates. Bacteria involved in the cycling of metals, sulfur and nitrogen were detected, and their relationship with their habitat was discussed. This study sheds light on the bacterial communities associated with polymetallic nodules in the CCFZ and provides primary data on the bacterial diversity of this area.
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Citations
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Abstract
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- Noroviruses (NoV) are the key cause of acute epidemic gastroenteritis, and oysters harvested from NoVpolluted sea areas are considered as the significant vectors of viral transmission. To improve NoV detection from oyster using nested reverse transcription-polymerase chain reaction (RT-PCR), we evaluated the sensitivity and specificity of previously published primer pairs and the efficiency of different RNA extraction procedures. Among the primer pairs used for RT-PCR, the sensitivity of GIF1/GIR1-GIF2/GIR1 and GIIF1/GIIR1-GIIF2/GIIR1 was higher than that of other primer pairs used in nested RT-PCR for the detection of NoV genogroup I (NoV GI) and NoV GII from both NoV-positive stool suspension and NoVseeded oyster concentrates, respectively; the resulting products showed neither unspecific bands in the positive samples nor false-positive bands in the negative controls. The extraction of NoV RNA from oyster samples using a QIAamp? Viral RNA Mini kit with a QIAshredderTM Homogenizer pretreatment afforded more efficient recovery (mean recovery for NoV GI and GII, 6.4%) and the procedure was less time consuming (<30 min) than most other RNA extraction procedures. The results of RNA extraction procedure and primer pairs evaluated by nested RT-PCR assay in this study can be useful for monitoring NoV contamination in oysters, which is an indicator of possible public health risks.
- Effects of Crude Oil on Marine Microbial Communities in Short Term Outdoor Microcosms
- Seung Won Jung , Joon Sang Park , Oh Youn Kown , Jung-Hoon Kang , Won Joon Shim , Young-Ok Kim
- J. Microbiol. 2010;48(5):594-600. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0199-2
- 213 View
- 0 Download
- 43 Scopus
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Abstract
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- To assess the effects of crude oil spills on marine microbial communities, 10 L outdoor microcosms were manipulated over an exposure period of 8 days. The responses of microbial organisms exposed to five crude oil concentrations in 10 to 10,000 ppm (v/v) were monitored in the microcosms. The abundance of microalgae and copepods decreased rapidly upon the addition of crude oil at concentrations over 1,000 ppm, whereas the total density of heterotrophic bacteria increased dramatically at the higher concentrations. Bacterial diversity, determined by denaturing gradient gel electrophoresis, was increased at higher concentrations. In particular, the intensity of the bands representing Jannaschia sp. and Sulfitobacter brevis increased with the addition of oil. These results indicate that crude oil spills with concentrations over 1,000 ppm seriously affected the structure of the microbial communities.
- Pseudoxanthomonas icgebensis sp. nov., Isolated from the Midgut of Anopheles stephensi Field-Collected Larvae§
- Asha Rani , Anil Sharma , Tridibes Adak , Raj K. Bhatnagar
- J. Microbiol. 2010;48(5):601-606. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0125-7
- 226 View
- 0 Download
- 4 Scopus
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Abstract
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- A Gram-negative, aerobic, golden yellow, rod-shaped bacterium, a strain designated ICGEB-L15T, was isolated from the larval midgut of Anopheles stephensi captured in District Jhajjar, Haryana, India. The strain ICGEB-L15T grows at 30-50°C (optimum 30-37°C), pH 6.5-8.5 (optimum 7.0-8.0) and in the presence of 2% NaCl. The major fatty acids were iso-C15:0 (22.5% of total fatty acid), anteiso-C15:0 (16.5%), iso-C17:1ω9c (10.3%), iso-C16:0 (7.3%), C16:0 (6.1%), and iso-C11:0 (5.3%). The strain showed the highest 16S rRNA gene sequence similarities with the type strains Pseudoxanthomonas daejeonensis KCTC 12207T (97.4%), Pseudoxanthomonas kaohsiungensis J36T (97.17%), and Pseudoxanthomonas mexicana AMX 26BT (97.11%). The DNA relatedness between ICGEB-L15T and Pseudoxanthomonas daejeonensis KCTC 12207T, Pseudoxanthomonas kaohsiungensis J36T and Pseudoxanthomonas mexicana AMX 26BT was 24.5%, 28.2%, and 33.6%, respectively. The G+C content of genomic DNA was 69.9 mol%. The major isoprenoid quinone of strain ICGEB-L15T was Q-8. The strain ICGEB-L15T represents a novel species of the genus Pseudoxanthomonas based on physiological, biochemical and phylogenetic properties; therefore, the name Pseudoxanthomonas icgebensis sp. nov. is proposed. The type strain is ICGEB-L15T (=KACC 14090T =DSM 22536T).
Journal Article
- Re-identification of Aspergillus fumigatus sensu lato Based on a New Concept of Species Delimitation
- Seung-Beom Hong , Dae-Ho Kim , In-Cheol Park , Young-Joon Choi , Hyeon-Dong Shin , Robert Samson
- J. Microbiol. 2010;48(5):607-615. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0084-z
- 202 View
- 0 Download
- 16 Scopus
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Abstract
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- The species concept of Aspergillus fumigatus sensu stricto has recently been defined by polyphasic taxonomy. Based on the new concept of species delimitations, 146 worldwide strains of Aspergillus fumigatus sensu lato were re-identified. Of those 146 strains, 140 (95.8%) could be identified as A. fumigatus sensu stricto, 3 (2.1%) as A. lentulus, and the remaining 3 strains as A. viridinutans complex, Neosartorya udagawae, and N. cf. nishimurae. Of 98 clinical strains, only 1 from dolphin nostril was identified as A. lentulus and not A. fumigatus sensu stricto. Random amplification of polymorphic DNA-polymerase chain reaction (RAPD-PCR) with primers PELF and URP1F produced nearly the same band patterns among 136 strains of A. fumigatus sensu stricto while discriminated the species from its related species. We also discussed about identification of several atypical A. fumigatus strains from clinical environments.
Research Support, Non-U.S. Gov'ts
- New Taxa in Alphaproteobacteria: Brevundimonas olei sp. nov., an Esterase-Producing Bacterium
- Myungjin Lee , Sathiyaraj Srinivasan , Myung Kyum Kim
- J. Microbiol. 2010;48(5):616-622. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-9367-7
- 304 View
- 0 Download
- 7 Crossref
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Abstract
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- A polyphasic taxonomic approach was used to characterize a Gram-negative, non-motile bacterium, designated MJ15T, that was isolated from soil of a GS-Caltex Oil reservoir in Korea. As shown by comparative 16S rRNA gene sequence analysis, strain MJ15T belongs to genus Brevundimonas. The 16S rRNA gene sequence similarities ranged from 95.6-99.2% between strain MJ15T and validated representatives of the genus Brevundimonas. With respect to Brevundimonas species, strain MJ15T exhibited DNA-DNA relatedness values below 40.7%. The G+C content of the genomic DNA was 61.7 mol%. Strain MJ15T contained ubiquinone Q-10. The major fatty acids were C16:0 (27.7%), C19:0 cyclo ω8c (23.2%), summed feature 8 (containing C18:1 ω7c/C18:1 ω6c) (28.5%), and major hydroxyl fatty acid was C12:0 3OH (3.7%). Based upon its phenotypic and genotypic properties, as well as its phylogenetic distinctiveness, strain MJ15T (KCTC 22461T; JCM 16237T) should be classified in the genus Brevundimonas as the type strain of a novel species. The name Brevundimonas olei sp. nov. is proposed for this new species.
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Citations
Citations to this article as recorded by-
Brevundimonas brasiliensis
sp. nov.: a New Multidrug-Resistant Species Isolated from a Patient in Brazil
Gabriela Guerrera Soares, Emeline Boni Campanini, Roumayne Lopes Ferreira, Marcelo Silva Folhas Damas, Saulo Henrique Rodrigues, Leslie Camelo Campos, Jucimária Dantas Galvão, Andrea Soares da Costa Fuentes, Caio César de Melo Freire, Iran Malavazi, André
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Uriel Gomez-Ramirez, Carolina G. Nolasco-Romero, Araceli Contreras-Rodríguez, Gerardo Zuñiga, Sandra Mendoza-Elizalde, Francisco-Javier Prado-Galbarro, Fernando Pérez Aguilar, Jonatan Elihu Pedraza Tinoco, Pedro Valencia-Mayoral, Norma Velázquez-Guadarram
Microorganisms.2023; 11(11): 2748. CrossRef -
Genome-Based Taxonomy of
Brevundimonas
with Reporting
Brevundimonas huaxiensis
sp. nov.
Lina Liu, Yu Feng, Li Wei, Zhiyong Zong, Jasna Kovac
Microbiology Spectrum.2021;[Epub] CrossRef - Oil Bioremediation in a Tropical Contaminated Soil Using a Reactor
CATALINA TREJOS-DELGADO, GLORIA E. CADAVID-RESTREPO, ANGELINA HORMAZA-ANAGUANO, EDISON A. AGUDELO, LEONARDO BARRIOS-ZIOLO, JUAN CARLOS LOAIZA-USUGA, SANTIAGO A. CARDONA-GALLO
Anais da Academia Brasileira de Ciências.2020;[Epub] CrossRef - Facilitated bio-mineralization of N,N-dimethylformamide in anoxic denitrification system: Long-term performance and biological mechanism
Jing Wang, Xiaolin Liu, Xinbai Jiang, Libin Zhang, Cheng Hou, Guanyong Su, Lianjun Wang, Yang Mu, Jinyou Shen
Water Research.2020; 186: 116306. CrossRef - Molecular Identification and Evaluation of Indigenous Bacterial Isolates for Their Plant Growth Promoting and Biological Control Activities against Fusarium Wilt Pathogen of Tomato
Amanul Islam, Md. Shahinur Kabir, Abul Khair
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Brevundimonas brasiliensis
sp. nov.: a New Multidrug-Resistant Species Isolated from a Patient in Brazil
- Nocardioides ginsengisegetis sp. nov., Isolated from Soil of a Ginseng Field
- Wan-Taek Im , Se-Young Kim , Qing-Mei Liu , Jung-Eun Yang , Sung-Taik Lee , Tae-Hoo Yi
- J. Microbiol. 2010;48(5):623-628. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0001-5
- 248 View
- 0 Download
- 25 Crossref
-
Abstract
PDF
- A Gram-positive, rod-shaped, non-spore-forming bacterium (Gsoil 485T) was isolated from the soil of a ginseng field located in Pocheon province in South Korea. This bacterium was characterized in order to determine its taxonomic position by using the polyphasic approach. On the basis of 16S rRNA gene sequence similarity, strain Gsoil 485T was shown to belong to the family Nocardioidaceae and related to Nocardioides koreensis (96.8% 16S rRNA gene sequence similarity), Nocardioides basaltis (96.7%), Nocardioides salarius (96.7%), and Nocardioides sediminis (96.5%). The sequence similarity with other species that had validly published names within the genus Nocardioides was less than 96.4%. Strain Gsoil 485T was characterized chemotaxonomically as having LL-2,6-diaminopimelic acid in a cell-wall peptidoglycan, MK-8(H4) as the predominant menaquinone, and iso-C16:0, C18:1 ω9c as the major fatty acids. The G+C content of genomic DNA was 71.6 mol%. The chemotaxonomic properties and phenotypic characteristics supported the affiliation of strain Gsoil 485T to the genus Nocardioides. The results of both physiological and biochemical tests allowed for genotypic differentiation of strain Gsoil 485T from the recognized Nocardioides species. Therefore, strain Gsoil 485T is considered to represent the novel species, for which the name Nocardioides ginsengisegetis sp. nov. is proposed, with the type strain Gsoil 485T (KACC 14269T =KCTC 19469T =DSM 21349T).
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Citations
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Zhenting Shi, Limin Yang, Meiling Yang, Kexin Li, Li Yang, Mei Han
Frontiers in Microbiology.2024;[Epub] CrossRef - Nocardioides luti sp. nov., belonging to the family Nocardioidaceae isolated from kaolinite, exhibiting the biosynthesis potential of alkylresorcinol
Deok Jun Yoon, Eui-Sang Cho, Chi Young Hwang, Young-Do Nam, So-Lim Park, Seong-Il Lim, Myung-Ji Seo
Antonie van Leeuwenhoek.2021; 114(7): 983. CrossRef - Draft Genome Sequence of Deoxynivalenol-Degrading Actinomycete Nocardioides sp. Strain LS1, Isolated from Wheat Leaves in Japan
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Dong-Shan An, Muhammad Zubair Siddiqi, Kyoung-Ho Kim, Hong-Shan Yu, Wan-Taek Im
Journal of Microbiology.2018; 56(1): 24. CrossRef - Paenibacillus konkukensis sp. nov., isolated from animal feed
Wan-Taek Im, Kwon-Jung Yi, Sang-Suk Lee, Hyung In Moon, Che Ok Jeon, Dong-Woon Kim, Soo-Ki Kim
International Journal of Systematic and Evolutionary Microbiology.2017; 67(7): 2343. CrossRef - Mucilaginibacter pocheonensis sp. nov., with ginsenoside-converting activity, isolated from soil of a ginseng-cultivating field
Yan Zhao, Hyung-Gwan Lee, Soo-Ki Kim, Hongshan Yu, Fengxie Jin, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology.2016; 66(8): 2862. CrossRef - Phenylobacterium aquaticum sp. nov., isolated from the reservoir of a water purifier
Jung Hun Jo, Gyu-Min Choi, Soon-Youl Lee, Wan-Taek Im
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Flavisolibacter ginsenosidimutans sp. nov., with ginsenoside-converting activity isolated from soil used for cultivating ginseng
Yan Zhao, Qingmei Liu, Myung-Suk Kang, Fengxie Jin, Hongshan Yu, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_12): 4868. CrossRef - Sphingosinicella ginsenosidimutans sp. nov., with ginsenoside converting activity
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Journal of Microbiology.2015; 53(7): 435. CrossRef -
Nocardioides ungokensis sp. nov., isolated from lake sediment
Yan Zhao, Qingmei Liu, Myung-Suk Kang, Fengxie Jin, Hongshan Yu, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_12): 4857. CrossRef - Roseomonas sediminicola sp. nov., isolated from fresh water
Dan He, Jin-Kwang Kim, Xiao-Ye Jiang, Hye-Yoon Park, Changkai Sun, Hong-San Yu, Min-Ho Yoon, Sun-Chang Kim, Feng Xie Jin, Wan-Taek Im
Antonie van Leeuwenhoek.2014; 105(1): 191. CrossRef - Dynamics of Panax ginseng Rhizospheric Soil Microbial Community and Their Metabolic Function
Yong Li, YiXin Ying, WanLong Ding, Shilin Chen
Evidence-Based Complementary and Alternative Medicine.2014;[Epub] CrossRef -
Sphingomonas ginsengisoli sp. nov. and Sphingomonas sediminicola sp. nov.
Dong-Shan An, Qing-Mei Liu, Hyung-Gwan Lee, Mi-Seon Jung, Sun-Chan Kim, Sung-Taik Lee, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_2): 496. CrossRef -
Nocardioides perillae sp. nov., isolated from surface-sterilized roots of Perilla frutescens
Hui-Jing Du, Yu-Zhen Wei, Jing Su, Hong-Yu Liu, Bai-Ping Ma, Bao-Lin Guo, Yu-Qin Zhang, Li-Yan Yu
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_3): 1068. CrossRef - Mucilaginibacter ginsenosidivorax sp. nov., with ginsenoside converting activity isolated from sediment
Jin-Kwang Kim, Tae-Eun Choi, Qing-Mei Liu, Hye-Yoon Park, Tae-Hoo Yi, Min-Ho Yoon, Sun-Chang Kim, Wan-Taek Im
Journal of Microbiology.2013; 51(3): 394. CrossRef -
Nocardioides
daeguensis sp. nov., a nitrate-reducing bacterium isolated from activated sludge of an industrial wastewater treatment plant
Yingshun Cui, Sung-Geun Woo, Jangho Lee, Sahastranshu Sinha, Myung-Suk Kang, Long Jin, Kwang Kyu Kim, Joonhong Park, Myungjin Lee, Sung-Taik Lee
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_10): 3727. CrossRef - Nocardioides panaciterrulae sp. nov., isolated from soil of a ginseng field, with ginsenoside converting activity
Jin-Kwang Kim, Qing-Mei Liu, Hye-Yoon Park, Myung-Suk Kang, Sun-Chang Kim, Wan-Taek Im, Min-Ho Yoon
Antonie van Leeuwenhoek.2013; 103(6): 1385. CrossRef -
Identification and Characterization of a Mucilaginibacter sp. Strain QM49 β-Glucosidase and Its Use in the Production of the Pharmaceutically Active Minor Ginsenosides (
S
)-Rh
1
and (
Chang-Hao Cui, Qing-Mei Liu, Jin-Kwang Kim, Bong-Hyun Sung, Song-Gun Kim, Sun-Chang Kim, Wan-Taek Im
Applied and Environmental Microbiology.2013; 79(19): 5788. CrossRef - Lactobacillus ginsenosidimutans sp. nov., isolated from kimchi with the ability to transform ginsenosides
Hae-Min Jung, Qing-Mei Liu, Jin-Kwang Kim, Sung-Taik Lee, Sun-Chang Kim, Wan-Taek Im
Antonie van Leeuwenhoek.2013; 103(4): 867. CrossRef - Sphingomonas ginsenosidivorax sp. nov., with the ability to transform ginsenosides
Xue-Feng Jin, Jin-Kwang Kim, Qing-Mei Liu, Myung-Suk Kang, Dan He, Feng-Xie Jin, Sun-Chang Kim, Wan-Taek Im
Antonie van Leeuwenhoek.2013; 103(6): 1359. CrossRef -
Nocardioides ginsengagri sp. nov., isolated from the soil of a ginseng field
Sang-Hee Lee, Qing-Mei Liu, Sung-Taik Lee, Sun-Chang Kim, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology .2012; 62(Pt_3): 591. CrossRef -
Streptomyces panacagri sp. nov., isolated from soil of a ginseng field
Yingshun Cui, Sang-Hoon Baek, Liang Wang, Hyung-Gwan Lee, Changhao Cui, Sung-Taik Lee, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology .2012; 62(Pt_4): 780. CrossRef - Mucilaginibacter composti sp. nov., with ginsenoside converting activity, isolated from compost
Chang-Hao Cui, Tae-Eun Choi, Hongshan Yu, Fengxie Jin, Sung-Taik Lee, Sun-Chang Kim, Wan-Taek Im
The Journal of Microbiology.2011; 49(3): 393. CrossRef - List of new names and new combinations previously effectively, but not validly, published
International Journal of Systematic and Evolutionary Microbiology .2011; 61(11): 2563. CrossRef - Sphingomonas ginsenosidimutans sp. nov., with ginsenoside converting activity
Tae-Eun Choi, Qing-Mei Liu, Jung-Eun Yang, Siyi Sun, Se-Young Kim, Tae-Hoo Yi, Wan-Taek Im
The Journal of Microbiology.2010; 48(6): 760. CrossRef
- Temporal heterogeneity of the root microbiome in Panax ginseng soils across ecological compartments under mild soil disturbance
- Characterization of Escherichia coli EutD: a Phosphotransacetylase of the Ethanolamine Operon
- Federico P. Bologna , Valeria A. Campos-Bermudez , Damián D. Saavedra , Carlos S. Andreo , María F. Drincovich
- J. Microbiol. 2010;48(5):629-636. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0091-0
- 239 View
- 0 Download
- 15 Crossref
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Abstract
PDF
- The Escherichia coli genes pta and eutD encode proteins containing the phosphate-acetyltransferase domain. EutD is composed only by this domain and belongs to the ethanolamine operon. This enzyme has not been characterized yet, and its relationship to the multimodular E. coli phosphotransacetylase (Pta) remains unclear. In the present work, a detailed characterization of EutD from E. coli (EcEutD) was performed. The enzyme is a more efficient phosphotransacetylase than E. coli Pta (EcPta) in catalyzing its reaction in either direction and assembles as a dimer, being differentially modulated by EcPta effectors. When comparing EutD and Pta, both from E. coli, certain divergent regions of the primary structure responsible for their unique properties can be found. The growth on acetate of the E. coli pta acs double-mutant strain, was complemented by either introducing EcEutD or by inducing the eut operon with ethanolamine. In this case, the expression of a phosphotransacetylase different from Pta was confirmed by activity assays. Overall, the results indicate that EcEutD and Pta, although able to catalyse the same reaction, display differential efficiency and regulation, and also differ in the induction of their expression. However, under certain growth conditions, they can fulfil equal roles in E. coli metabolism.
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- Characterization of Deinococcus radiophilus Thioredoxin Reductase Active with Both NADH and NADPH
- Hee-Jeong Seo , Young Nam Lee
- J. Microbiol. 2010;48(5):637-643. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0283-7
- 295 View
- 0 Download
- 3 Crossref
-
Abstract
PDF
- Thioredoxin reductase (TrxR, EC 1.6.4.5) of Deinococcus radiophilus was purified by steps of sonication, ammonium sulfate fractionation, 2'5' ADP Sepharose 4B affinity chromatography, and Sephadex G-100 gel filtration. The purified TrxR, which was active with both NADPH and NADH, gave a 368 U/mg protein of specific activity with 478-fold purification and 18% recovery from the cell-free extract. An isoelectric point of the purified enzymes was ca. 4.5. The molecular weights of the purified TrxR estimated by PAGE and gel filtration were about 63.1 and 72.2 kDa, respectively. The molecular mass of a TrxR subunit is 37 kDa. This suggests that TrxR definitely belongs to low molecular weight TrxR (L-TrxR). The Km and Vmax of TrxR for NADPH are 12.5 μM and 25 μM/min, whereas those for NADH are 30.2 μM and 192 μ M/min. The Km and Vmax for 5, 5'-dithio-bis-2-nitrobenzoic acid (DTNB, a substituted substrate for thioredoxin) are 463 μM and 756 μM/min, respectively. The presence of FAD in TrxR was confirmed with the absorbance peaks at 385 and 460 nm. The purified TrxR was quite stable from pH 3 to 9, and was thermo-stable up to 70°C. TrxR activity was drastically reduced (ca. 70%) by Cu2+, Zn2+, Hg2+, and Cd2+, but moderately reduced (ca. 50%) by Ag+. A significant inhibition of TrxR by N ethylmaleimide suggests an occurrence of cysteine at its active sites. Amino acid sequences at the N-terminus of purified TrxR are H2N-Ser-Glu-Gln-Ala-Gln-Met-Tyr-Asp-Val-Ile-Ile-Val-Gly-Gly-Gly-Pro-Ala-Gly-Leu-Thr-Ala-COOH. These sequences show high similarity with TrxRs reported in Archaea, such as Methanosarcina mazei, Archaeoglobus fulgidus etc.
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Eda Dagsuyu, Refiye Yanardag
Protein Expression and Purification.2024; 216: 106417. CrossRef - A Reexamination of Thioredoxin Reductase from Thermoplasma acidophilum, a Thermoacidophilic Euryarchaeon, Identifies It as an NADH-Dependent Enzyme
Dwi Susanti, Usha Loganathan, Austin Compton, Biswarup Mukhopadhyay
ACS Omega.2017; 2(8): 4180. CrossRef - Genetic variability of mutans streptococci revealed by wide whole-genome sequencing
Lifu Song, Wei Wang, Georg Conrads, Anke Rheinberg, Helena Sztajer, Michael Reck, Irene Wagner-Döbler, An-Ping Zeng
BMC Genomics.2013;[Epub] CrossRef
- Purification of thioredoxin reductase from Spirulina platensis by affinity chromatography and investigation of kinetic properties
- Identification of Vibrio natriegens uvrA and uvrB Genes and Analysis of Gene Regulation Using Transcriptional Reporter Plasmids
- Keryn L. Simons , Susan M. Thomas , Peter A. Anderson
- J. Microbiol. 2010;48(5):644-656. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-9370-z
- 275 View
- 1 Download
- 6 Crossref
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Abstract
PDF
- Nucleotide excision repair (NER) rectifies a variety of chemically and structurally distinct DNA lesions. The current model of NER is based upon the enteric bacterium Escherichia coli and there is scarce information about how other bacterial species respond to, and correct, DNA damage. Here we report the isolation and functional analysis of the uvrA and uvrB genes from Vibrio natriegens, a naturally occurring marine bacterium. Genetic studies were completed to assess the repair capabilities of V. natriegens uvrA and uvrB in E. coli uvrA and uvrB mutants. In addition to the genetic studies, transcriptional fusions between the luciferase gene and the 5′ regulatory regions of uvrA and uvrB gene of V. natriegens and E. coli were constructed. Luminescent measurements from E. coli transformed with these constructs showed that whilst the response to UV irradiation of either E. coli or V. natriegens uvrA regulatory sequences was similar, both the rate and induction of luminescence detected from the uvrB regulatory regions differed.
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Citations
Citations to this article as recorded by- Taking Synthetic Biology to the Seas: From Blue Chassis Organisms to Marine Aquaforming
Lennart Schada von Borzyskowski
ChemBioChem.2023;[Epub] CrossRef - Redesign of ultrasensitive and robust RecA gene circuit to sense DNA damage
Jack X. Chen, Boon Lim, Harrison Steel, Yizhi Song, Mengmeng Ji, Wei E. Huang
Microbial Biotechnology.2021; 14(6): 2481. CrossRef - Vibrio natriegens: an ultrafast‐growing marine bacterium as emerging synthetic biology chassis
Josef Hoff, Benjamin Daniel, Daniel Stukenberg, B W. Thuronyi, Torsten Waldminghaus, Georg Fritz
Environmental Microbiology.2020; 22(10): 4394. CrossRef - Construction of a bioreporter by heterogeneously expressing a Vibrio natriegens recA::luxCDABE fusion in Escherichia coli, and genotoxicity assessments of petrochemical-contaminated groundwater in northern China
Bo Jiang, Wei E. Huang, Guanghe Li
Environmental Science: Processes & Impacts.2016; 18(6): 751. CrossRef - The application of a carrier-based bioremediation strategy for marine oil spills
Petra J. Sheppard, Keryn L. Simons, Eric M. Adetutu, Krishna K. Kadali, Albert L. Juhasz, Mike Manefield, Priyangshu M Sarma, Banwari Lal, Andrew S. Ball
Marine Pollution Bulletin.2014; 84(1-2): 339. CrossRef - Carrier mounted bacterial consortium facilitates oil remediation in the marine environment
Keryn L. Simons, Petra J. Sheppard, Eric M. Adetutu, Krishna Kadali, Albert L. Juhasz, Mike Manefield, Priyangshu M. Sarma, Banwari Lal, Andrew S. Ball
Bioresource Technology.2013; 134: 107. CrossRef
- Taking Synthetic Biology to the Seas: From Blue Chassis Organisms to Marine Aquaforming
- Replication and Pathogenesis of the Pandemic (H1N1) 2009 Influenza Virus in Mammalian Models
- Donghyok Kwon , Kyeongcheol Shin , Seungtae Kim , Yooncheol Ha , Jang-Hoon Choi , Jeong Seon Yang , Joo-Yeon Lee , Chanhee Chae , Hee-Bok Oh , Chun Kang
- J. Microbiol. 2010;48(5):657-662. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0120-z
- 197 View
- 0 Download
- 19 Scopus
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Abstract
PDF
- This study aimed to characterize the replication and pathogenic properties of a Korean pandemic (H1N1) 2009 influenza virus isolate in ferrets and mice. Ferrets infected with A/Korea/01/2009 (H1N1) virus showed mild clinical signs. The virus replicated well in lungs and slightly in brains with no replication in any other organs. Severe bronchopneumonia and thickening of alveolar walls were detected in the lungs. Viral antigens were detected in the bronchiolar epithelial cells, in peribronchial glands with severe peribronchitis and in cells present in the alveoli. A/Korea/01/2009 (H1N1) virus-infected mice showed weight loss and pathological lung lesions including perivascular cuffing, interstitial pneumonia and alveolitis. The virus replicated highly in the lungs and slightly in the nasal tissues. Viral antigens were detected in bronchiolar epithelial cells, pneumocytes and interstitial macrophages. However, seasonal H1N1 influenza virus did not replicate in the lungs of ferrets, and viral antigens were not detected. Thus, this Korean pandemic (H1N1) 2009 isolate infected the lungs of ferrets and mice successfully and caused more pathological lesions than did the seasonal influenza virus.
- Molecular Cloning and Characterization of clyA Genes in Various Serotypes of Salmonella enterica
- Lan Ji Huang , Jinghua Cui , Hong Hua Piao , Yeongjin Hong , Hyon E. Choy , Phil Youl Ryu
- J. Microbiol. 2010;48(5):663-667. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-9268-9
- 219 View
- 0 Download
- 6 Crossref
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Abstract
PDF
- Cytolysin A (ClyA) is a pore-forming hemolytic protein encoded by the clyA gene. It has been identified in Salmonella enterica serovars Typhi and Paratyphi A. To identify and characterize the clyA genes in various Salmonella enterica strains, 21 different serotypes of strains isolated from clinical specimens were presently examined. Full-length clyA genes were found in S. enterica serovar Brandenburg, Indiana, Panama, and Schwarzengrund strains by polymerase chain reaction amplification. The ClyA proteins from these four strains showed >97% amino acid identity to that of S. enterica serovar Typhi. Although all four serovars expressed detectable levels of ClyA as determined by Western blot analysis, they did not show a strong hemolytic effect on blood agar, indicating that ClyA may not be efficiently expressed or secreted. Escherichia coli transformed with clyA genes from the four serovars enhanced production of ClyA proteins and hemolytic activities to a level similar to S. enterica serovar Typhi ClyA. The present results suggest that ClyA may play a role in the pathogenesis of S. enterica serovar Brandenburg, Indiana, Panama and Schwarzengrund.
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Citations
Citations to this article as recorded by- Plasmid profile and role in virulence of salmonella enterica serovars isolated from food animals and humans in Lagos Nigeria
Ajayi Abraham, Smith Stella Ifeanyi, Fowora Muinah, Bode-Sojobi Ibidunni Oreoluwa, Kalpy Julien Coulibaly, Adeleye Isaac Adeyemi
Pathogens and Global Health.2019; 113(6): 282. CrossRef -
Assembly mechanism of the α-pore–forming toxin cytolysin A from
Escherichia coli
Daniel Roderer, Rudi Glockshuber
Philosophical Transactions of the Royal Society B: Biological Sciences.2017; 372(1726): 20160211. CrossRef - Soluble Oligomers of the Pore-forming Toxin Cytolysin A from Escherichia coli Are Off-pathway Products of Pore Assembly
Daniel Roderer, Stephan Benke, Benjamin Schuler, Rudi Glockshuber
Journal of Biological Chemistry.2016; 291(11): 5652. CrossRef - The assembly dynamics of the cytolytic pore toxin ClyA
Stephan Benke, Daniel Roderer, Bengt Wunderlich, Daniel Nettels, Rudi Glockshuber, Benjamin Schuler
Nature Communications.2015;[Epub] CrossRef - Eha, a transcriptional regulator of hemolytic activity ofEdwardsiella tarda
Daqing Gao, Jing Cheng, Enjin Zheng, Yuhong Li, Zeye Shao, Zeyan Xu, Chengping Lu
FEMS Microbiology Letters.2014; 353(2): 132. CrossRef - Elevated recombinant clyA gene expression in the uropathogenic Escherichia coli strain 536, a clue to explain pathoadaptive mutations in a subset of extraintestinal E. coli strains
Constance Oben Ayuk Enow, Jan Oscarsson, Nikola Zlatkov, Marie Westermark, Marylise Duperthuy, Sun Nyunt Wai, Bernt Eric Uhlin
BMC Microbiology.2014;[Epub] CrossRef
- Plasmid profile and role in virulence of salmonella enterica serovars isolated from food animals and humans in Lagos Nigeria
- Iron Homeostasis in Brucella abortus: the Role of Bacterioferritin
- Marta A. Almirón , Rodolfo A. Ugalde
- J. Microbiol. 2010;48(5):668-673. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0145-3
- 245 View
- 0 Download
- 9 Crossref
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Abstract
PDF
- Brucella abortus is the etiological agent of bovine brucellosis, an infectious disease of humans and cattle. Its pathogenesis is mainly based on its ability to survive and multiply inside macrophages. It has been demonstrated that if B. abortus ferrochelatase cannot incorporate iron into protoporphyrin IX to synthesize heme, the intracellular replication and virulence in mice is highly attenuated. Therefore, it can be hypothesized that the unavailability of iron could lead to the same attenuation in B. abortus pathogenicity. Thus, the purpose of this work was to obtain a B. abortus derivative unable to keep an internal iron pool and test its ability to replicate under iron limitation. To achieve this, we searched for iron-storage proteins in the genome of brucellae and found bacterioferritin (Bfr) as the sole ferritin encoded. Then, a B. abortus bfr mutant was built up and its capacity to store iron and replicate under iron limitation was investigated. Results indicated that B. abortus Bfr accounts for 70% of the intracellular iron content. Under iron limitation, the bfr mutant suffered from enhanced iron restriction with respect to wild type according to its growth retardation pattern, enhanced sensitivity to oxidative stress, accelerated production of siderophores, and altered expression of membrane proteins. Nonetheless, the bfr mutant was able to adapt and replicate even inside eukaryotic cells, indicating that B. abortus responds to internal iron starvation before sensing external iron availability. This suggests an active role of Bfr in controlling iron homeostasis through the availability of Bfr-bound iron.
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Citations
Citations to this article as recorded by- Brucellosis: Bacteriology, pathogenesis, epidemiology and role of the metallophores in virulence: a review
Ghassan Ghssein, Zeinab Ezzeddine, Sima Tokajian, Charbel Al Khoury, Hussein Kobeissy, Jose-Noel Ibrahim, Christelle Iskandar, Hussein F. Hassan
Frontiers in Cellular and Infection Microbiology.2025;[Epub] CrossRef - The Pseudogene BMEA_B0173 Deficiency in Brucella melitensis Contributes to M-epitope Formation and Potentiates Virulence in a Mice Infection Model
Ge Zhang, Hao Dong, Yu Feng, Hui Jiang, Tonglei Wu, Jiali Sun, Xin Wang, Minghe Liu, Xiaowei Peng, Yinghui Zhang, Xiaoqian Zhang, Liangquan Zhu, Jiabo Ding, Xingjia Shen
Current Microbiology.2022;[Epub] CrossRef - The Irr and RirA Proteins Participate in a Complex Regulatory Circuit and Act in Concert To Modulate Bacterioferritin Expression in Ensifer meliloti 1021
Daniela Costa, Vanesa Amarelle, Claudio Valverde, Mark R. O'Brian, Elena Fabiano, Robert M. Kelly
Applied and Environmental Microbiology.2017;[Epub] CrossRef - Transcriptome Analysis of the Intracellular Facultative Pathogen Piscirickettsia salmonis: Expression of Putative Groups of Genes Associated with Virulence and Iron Metabolism
Alvaro Machuca, Victor Martinez, James E Samuel
PLOS ONE.2016; 11(12): e0168855. CrossRef - Role and regulation of ferritin-like proteins in iron homeostasis and oxidative stress survival of Caulobacter crescentus
Ivan Gonçalves de Castro Ferreira, Mirian Molnar Rodrigues, José Freire da Silva Neto, Ricardo Ruiz Mazzon, Marilis do Valle Marques
BioMetals.2016; 29(5): 851. CrossRef - Quantitative analysis of the Brucella suis proteome reveals metabolic adaptation to long-term nutrient starvation
Sascha Al Dahouk, Véronique Jubier-Maurin, Heinrich Neubauer, Stephan Köhler
BMC Microbiology.2013; 13(1): 199. CrossRef - Adaptation of Salmonella enterica Hadar under static magnetic field: effects on outer membrane protein pattern
Sarra Snoussi, Alya El May, Laurent Coquet, Philippe Chan, Thierry Jouenne, Ahmed Landoulsi, Emmanuelle DÉ
Proteome Science.2012;[Epub] CrossRef - Iron Storage Proteins Are Essential for the Survival and Pathogenesis of Mycobacterium tuberculosis in THP-1 Macrophages and the Guinea Pig Model of Infection
P. Vineel Reddy, Rupangi Verma Puri, Aparna Khera, Anil K. Tyagi
Journal of Bacteriology.2012; 194(3): 567. CrossRef - Metal acquisition and virulence inBrucella
R. Martin Roop
Animal Health Research Reviews.2012; 13(1): 10. CrossRef
- Brucellosis: Bacteriology, pathogenesis, epidemiology and role of the metallophores in virulence: a review
- Immune Response Induced by ppGpp-Defective Salmonella enterica serovar Gallinarum in Chickens
- Sang-Ik Park , Jae-Ho Jeong , Hyon E. Choy , Joon Haeng Rhee , Hee-Sam Na , Tae-Hoon Lee , Moon Her , Kyoung-Oh Cho , Yeongjin Hong
- J. Microbiol. 2010;48(5):674-681. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0179-6
- 225 View
- 0 Download
- 17 Crossref
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Abstract
PDF
- To protect chickens from typhoid caused by Salmonella enterica serovar Gallinarum (S. Gallinarum), the attenuated 9R strain has been used in the field as a vaccine. However, safety concerns have been raised because the mutations in 9R are undefined while its efficacy is still a question under debate. A global regulator, ppGpp, synthesized by RelA and SpoT, has been shown to induce various virulence genes in S. Gallinarum (Jeong et al., 2008). In this study, two mutant strains defective in ppGpp-synthesis were constructed in wild-type S. Gallinarum (∆ppGpp) and 9R strain (9R-∆ppGpp) backgrounds and tested as live vaccines in chickens. After oral inoculation, the LD50 values of ∆ppGpp and 9R-∆ppGpp were approximately 5×1010 colony forming unit (CFU) similarly as 9R strain, which was ~105-fold higher than that of the wildtype S. Gallinarum strain. Immunological analyses revealed immunization with either of the two attenuated ppGpp-defective strains induced significant antibody responses, the production of antibody-secreting B cells in blood, proliferation of CD4+ and CD8+ T cells in the spleen, and splenic expression of proinflammatory cytokines, such as IFN-γ and TGF-β4, at levels comparable to the 9R strain. Chickens immunized with the mutants (1×108 CFU) were 80% protected against oral challenge with 1×109 wild-type virulent bacteria (4,000-fold LD50 dose), similar to the level of protection achieved by 9R immunization. Based on these data, live attenuated ∆ppGpp-defective strains may serve as novel vaccines to control fowl typhoid in chickens.
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Citations
Citations to this article as recorded by- Progress in the application of Salmonella vaccines in poultry: A mini review
Jie Pan, Rong-rong Wei, Ping Xu, Yun-ying Liu, Chen Li, Guo-wei Ding, Juan Fan, Yu-he Li, Jing-yi Yu, Peng Dai
Veterinary Immunology and Immunopathology.2024; 278: 110855. CrossRef - Mutating both relA and spoT of enteropathogenic Escherichia coli E2348/69 attenuates its virulence and induces interleukin 6 in vivo
Jun Bong Lee, Se Kye Kim, Dalmuri Han, Jang Won Yoon
Frontiers in Microbiology.2023;[Epub] CrossRef - Vaccines to Control Salmonella in Poultry
Roy Curtiss
Avian Diseases.2023;[Epub] CrossRef - Pathophysiology of enteropathogenic Escherichia coli during a host infection
Jun Bong Lee, Se Kye Kim, Jang Won Yoon
Journal of Veterinary Science.2022;[Epub] CrossRef - Evaluation of Safety and Protective Efficacy of a waaJ and spiC Double Deletion Korean Epidemic Strain of Salmonella enterica Serovar Gallinarum
Jun-Feng Zhang, Ke Shang, Bai Wei, Yea-Jin Lee, Jong-Yeol Park, Hyung-Kwan Jang, Se-Yeoun Cha, Min Kang
Frontiers in Veterinary Science.2021;[Epub] CrossRef - Survival of the Fittest: The Relationship of (p)ppGpp With Bacterial Virulence
Shivani Kundra, Cristina Colomer-Winter, José A. Lemos
Frontiers in Microbiology.2020;[Epub] CrossRef - Immunogenicity and duration of immunity of the polyvalent vaccine against chicken salmonellosis
О. М. Sen, О. О. Saliy, V. I. Mazurkevych, Y. A. Sobko
Regulatory Mechanisms in Biosystems.2020; 11(4): 506. CrossRef - Detection of Novel duck reovirus (NDRV) using visual reverse transcription loop-mediated isothermal amplification (RT-LAMP)
Zhili Li, Yuejia Cai, Guozhi Liang, Saeed El-Ashram, Minmin Mei, Wenjing Huang, Xiaowen Li, Wenfeng Li, Cheng He, Shujian Huang
Scientific Reports.2018;[Epub] CrossRef - Protective efficacy and immune responses by homologous prime-booster immunizations of a novel inactivatedSalmonellaGallinarum vaccine candidate
Gayeon Won, Atul A. Chaudhari, John Hwa Lee
Clinical and Experimental Vaccine Research.2016; 5(2): 148. CrossRef - Characterization of the RelBbu Regulon in Borrelia burgdorferi Reveals Modulation of Glycerol Metabolism by (p)ppGpp
Julia V. Bugrysheva, Christopher J. Pappas, Darya A. Terekhova, Radha Iyer, Henry P. Godfrey, Ira Schwartz, Felipe C. Cabello, Petros C. Karakousis
PLOS ONE.2015; 10(2): e0118063. CrossRef - Generation of a safety enhanced Salmonella Gallinarum ghost using antibiotic resistance free plasmid and its potential as an effective inactivated vaccine candidate against fowl typhoid
Chetan V. Jawale, Atul A. Chaudhari, John Hwa Lee
Vaccine.2014; 32(9): 1093. CrossRef - A novel approach for the generation of Salmonella Gallinarum ghosts and evaluation of their vaccine potential using a prime-booster immunization strategy
Chetan V. Jawale, John Hwa Lee
Vaccine.2014; 32(50): 6776. CrossRef - A review of vaccine development and research for industry animals in Korea
Nak-Hyung Lee, Jung-Ah Lee, Seung-Yong Park, Chang-Seon Song, In-Soo Choi, Joong-Bok Lee
Clinical and Experimental Vaccine Research.2012; 1(1): 18. CrossRef - Improved vaccines through targeted manipulation of the body's immunological risk‐assessment?
Leif E. Sander
BioEssays.2012; 34(10): 876. CrossRef - Characterization of a Novel Inactivated Salmonella enterica Serovar Enteritidis Vaccine Candidate Generated Using a Modified cI857/λ PR/GeneEExpression System
Chetan V. Jawale, Atul A. Chaudhari, Byung Woo Jeon, Rahul M. Nandre, John Hwa Lee, A. J. Bäumler
Infection and Immunity.2012; 80(4): 1502. CrossRef - Role of RelA and SpoT in Burkholderia pseudomallei Virulence and Immunity
Claudia M. Müller, Laura Conejero, Natasha Spink, Matthew E. Wand, Gregory J. Bancroft, Richard W. Titball, A. Camilli
Infection and Immunity.2012; 80(9): 3247. CrossRef - Construction of a Salmonella Gallinarum ghost as a novel inactivated vaccine candidate and its protective efficacy against fowl typhoid in chickens
Atul A Chaudhari, Chetan V Jawale, Sam Woong Kim, John Hwa Lee
Veterinary Research.2012;[Epub] CrossRef
- Progress in the application of Salmonella vaccines in poultry: A mini review
- Detection of Representative Enteropathogenic Bacteria, Vibrio spp., Pathogenic Escherichia coli, Salmonella spp., Shigella spp., and Yersinia enterocolitica, Using a Virulence Factor Gene-Based Oligonucleotide Microarray§
- Dong-Hun Kim , Bok-Kwon Lee , Yong-Dae Kim , Sung-Keun Rhee , Young-Chang Kim
- J. Microbiol. 2010;48(5):682-688. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0119-5
- 195 View
- 0 Download
- 13 Crossref
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Abstract
PDF
- Rapid identification of enteropathogenic bacteria in stool samples is critical for clinical diagnosis and antimicrobial therapy. In this study, we describe the development of an approach that couples multiplex PCR with hybridization to a DNA microarray, to allow the simultaneous detection of the 10 pathogens. The microarray was synthesized with 20-mer oligonucleotide probes that were designed to be specific for virulencefactor genes of each strain. The detection limit for genomic DNA from a single strain was approximately 10 fg. In the presence of heterogeneous non-target DNA, the detection sensitivity of the array decreased to approximately 100 fg. We did not observe any non-specific hybridization. In addition, we successfully used this oligonucleotide-based DNA microarray to identify the causative agents in clinical stool samples from patients with food-borne enteritis.
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Citations
Citations to this article as recorded by- Conventional and molecular methods used in the detection and subtyping of Yersinia enterocolitica in food
Stefanos Petsios, Maria Fredriksson-Ahomaa, Hercules Sakkas, Chrissanthy Papadopoulou
International Journal of Food Microbiology.2016; 237: 55. CrossRef - Determination ofShigella flexneriby a Novel Fluorescent Aptasensor
Wenhui Zhu, Zhongjie Li, Xinxing Liu, Xing Yan, Le Deng
Analytical Letters.2015; 48(18): 2870. CrossRef - Genome Wide Search for Biomarkers to Diagnose Yersinia Infections
Vipin Chandra Kalia, Prasun Kumar
Indian Journal of Microbiology.2015; 55(4): 366. CrossRef - Fluorescence-Based Bioassays for the Detection and Evaluation of Food Materials
Kentaro Nishi, Shin-Ichiro Isobe, Yun Zhu, Ryoiti Kiyama
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Qinghua Hu, DongYue Lyu, Xiaolu Shi, Yixiang Jiang, Yiman Lin, Yinghui Li, Yaqun Qiu, Lianhua He, Ran Zhang, Qingge Li
Foodborne Pathogens and Disease.2014; 11(3): 207. CrossRef - A DNA microarray for the versatile diagnosis of infectious diarrhea
Emilie Donatin, Sylvain Buffet, Quentin Leroy, Didier Raoult, Michel Drancourt
APMIS.2013; 121(7): 634. CrossRef - Simultaneous detection of gastrointestinal pathogens with a multiplex Luminex-based molecular assay in stool samples from diarrhoeic patients
C. Mengelle, J.M. Mansuy, M.F. Prere, E. Grouteau, I. Claudet, N. Kamar, A. Huynh, G. Plat, M. Benard, N. Marty, A. Valentin, A. Berry, J. Izopet
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Noriko Goji, Trevor MacMillan, Kingsley Kwaku Amoako
Journal of Pathogens.2012; 2012: 1. CrossRef - Detection and characterization of pathogenic vibrios in shellfish by a Ligation Detection Reaction-Universal Array approach
Alessia Cariani, Annamaria Piano, Clarissa Consolandi, Marco Severgnini, Bianca Castiglioni, Giada Caredda, Marco Candela, Patrizia Serratore, Gianluca De Bellis, Fausto Tinti
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Journal Article
- Molecular Characteristics and Resistant Mechanisms of Imipenem-Resistant Acinetobacter baumannii Isolates in Shenyang, China
- Jing Ping Zhang , Wan Zhu , Su Fei Tian , Yun Zhuo Chu , Bai Yi Chen
- J. Microbiol. 2010;48(5):689-694. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0137-3
- 277 View
- 0 Download
- 17 Crossref
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Abstract
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- The investigation was carried out to elucidate the molecular characteristics and resistant mechanisms of imipenem-resistant Acinetobacter baumannii. Thirty-seven isolates were collected from January 2007 to December 2007. The homology of the isolates was analyzed by both pulsed field gel electrophoresis (PFGE) and multilocus sequence typing (MLST). The genes of β-lactamases, adeB, and class 1 integron were polymerase chain reaction amplified. Genotype analysis of the 37 A. baumannii isolates by PFGE revealed the circulation of four PFGE types (A-D) ; the A- and B-type accounted for 48.6% and 40.5%, respectively. MLST showed the existence of three allelic profiles. The agar dilution method was carried out to determine the MIC of imipenem, in the absence or presence of carbonyl cyanide m-chlorophenylhydrazone (CCCP, 10 μg/ml). The MICs of the strains to imipenem were between 16 μg/ml and 128 μg/ml. When CCCP was added, a MIC decrease of at least four-fold was observed in 20 isolates, which belonged to the A- or C-type. AdeB and blaPER-1 genes were each detected in 35 isolates, blaOXA-23 gene in 34 isolates and blaOXA-58-like gene in 24 isolates. All isolates harbored blaOXA-51-like genes. No isolates carried the blaIMP-1 gene. Integron was detected in 25 isolates, which mediated the resistance to aminoglycosides and rifampin. The epidemiologic data suggested that the increasing infection of A. baumannii in our hospital was mainly caused by the inter-hospital spread of two epidemic clones. The AdeABC efflux system may be the important factor that leads to the high level of imipenem-resistance in PFGE A-type.
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Citations
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Nabeela Farhat, Abid Ali, Robert A. Bonomo, Asad U. Khan
Drug Discovery Today.2020; 25(12): 2307. CrossRef - Pharmacokinetic and pharmacodynamic profiling of four antimicrobials against Acinetobacter baumannii infection
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Akif Reza, J. Mark Sutton, Khondaker Miraz Rahman
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Jundishapur Journal of Microbiology.2019;[Epub] CrossRef - In vitro evaluation of antimicrobial combinations against imipenem-resistant Acinetobacter baumannii of different MICs
Wan Zhu, Yang Wang, Wenxia Cao, Shiyue Cao, Jingping Zhang
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Wan Zhu, Hui Wang, Jing-Ping Zhang
Experimental and Therapeutic Medicine.2017; 13(5): 2177. CrossRef - Resistant mechanisms and molecular epidemiology of imipenem-resistant Acinetobacter baumannii
Shu-Zhen Xiao, Hai-Qing Chu, Li-Zhong Han, Zhe-Min Zhang, Bing Li, Lan Zhao, Liyun Xu
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Genetic Characterization of ST195 and ST365 Carbapenem-Resistant
Acinetobacter baumannii
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Yiqi Fu, Jingjin Jiang, Hua Zhou, Yan Jiang, Ying Fu, Yunsong Yu, Jianying Zhou, J. Ross Fitzgerald
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Ziad Daoud, Najwa Mansour, Khalil Masri
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Research Support, Non-U.S. Gov't
- Expression, Purification, and Characterization of Recombinant Fibulin-5 in a Prokaryote Expression System
- Myoung Seok Jeong , Chang Soo Kang , Yeon Soo Han , In Seok Bang
- J. Microbiol. 2010;48(5):695-700. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0320-6
- 278 View
- 1 Download
- 3 Crossref
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Abstract
PDF
- Fibulin-5 is a widely expressed, integrin-binding extracellular matrix protein that mediates endothelial cell adhesion and scaffolds cells to elastic fibers. To investigate anti-angiogenesis activities and context-specific activities on responsive cells of recombinant fibulin-5 (rfibulin-5) expressed in Escherichia coli, the cDNA of fibulin-5 cloned from a human placenta cDNA library was inserted into the pET32a (+) vector to allow fibulin-5 expression as a Trx fusion protein. The fusion protein Trx-fibulin-5, expressed as insoluble inclusion bodies, was solubilized and its resulting expression level reached to 15% of the total cell protein. The Trxfibulin-5 was purified effectively by N2+-chelating chromatography and then identified by Western blotting analysis with an anti-His tag antibody. The purified Trx-fibulin-5 was refolded by dialysis against redox reagents, and the rfibulin-5 released from the fusion protein by enterokinase cleavage was purified using a RESOURCE RPC column. The final purified rfibulin-5 effectively inhibited angiogenesis in chicken embryos in a dose-dependent manner through a chorioallantoic membrane (CAM) assay. Additionally, rfibulin-5 potently suppressed in vitro proliferation of human umbilical vein endothelial cells, but stimulated that of human dermal fibroblasts. The expression and in vitro refolding of rfibulin-5 resulted in production of an active molecule with a yield of 2.1 mg/L.
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Citations
Citations to this article as recorded by- Impact of UV pre-treatment on the Longissimus thoracis et lumborum muscle proteomes of dry-aged beef cuts: A characterisation within two sampling locations
Sara Álvarez, Carlos Álvarez, Anne Maria Mullen, Eileen O'Neill, Mohammed Gagaoua
Meat Science.2025; 221: 109729. CrossRef - Genome-wide association study on reproductive traits in Jinghai Yellow Chicken
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- Impact of UV pre-treatment on the Longissimus thoracis et lumborum muscle proteomes of dry-aged beef cuts: A characterisation within two sampling locations
Journal Article
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- DongGeRaMi Moon , Yun-Sun Park , Cha-Yeon Kim , Jin Ho Yoon
- J. Microbiol. 2010;48(5):701-705. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0353-x
- 265 View
- 0 Download
- 2 Crossref
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Abstract
PDF
- To identify mutations in genes that are genetically linked to rsm1, we performed a synthetic lethal genetic screen in the fission yeast, Schizosaccharomyces pombe. Four mutations that showed synthetic lethality in combination with the rsm1null allele were isolated from approximately 320,000 colonies and defined in three complementation groups. One mutant (SLrsm1) exhibited a significant accumulation of poly(A)+ RNA in the nucleus under synthetic lethal conditions, while the rest had no mRNA export defects. In addition, some genes (spmex67, rae1, or mlo3) required for mRNA export complemented the growth defects of the identified mutants. These results suggest that the isolated mutants contain mutations in genes that are involved in mRNA export and/or pre-mRNA retention.
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Citations
Citations to this article as recorded by- Structure of the pre-mRNA leakage 39-kDa protein reveals a single domain of integrated zf-C3HC and Rsm1 modules
Hideharu Hashimoto, Daniel H. Ramirez, Ophélie Lautier, Natalie Pawlak, Günter Blobel, Benoît Palancade, Erik W. Debler
Scientific Reports.2022;[Epub] CrossRef - Effects of spThoc7 Deletion on Growth and mRNA Export in Fission Yeast
Eun-Jin Koh, Jin Ho Yoon
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Research Support, Non-U.S. Gov'ts
- Growth Inhibition of the Yeast Transformant by the Expression of a Chitinase from Coprinellus congregatus
- Hyangsoon Lim , Hyoung T. Choi
- J. Microbiol. 2010;48(5):706-708. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0272-x
- 212 View
- 0 Download
- 6 Crossref
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Abstract
PDF
- Coprinellus congregatus generates several chitinases during its entire life cycle: at the growing hyphal stage and at the mushroom autolysis stage. We have isolated a chitinase gene (chi1) from the mushroom tissue at the autolysing stage, and constructed a chitinase expression vector to get large amount of enzyme protein. Chitinase 1 (chi1) cDNA was heterologously expressed in Saccharomyces cerevisiae by gal1 promoter. The transformants showed no specific change in growth characteristics under normal growth conditions. However the expression of the gene by the gal1 promoter in the yeast transformants resulted in complete growth inhibition, while laccase expression by the gal1 promoter showed normal growth. The chitinase activities from the transformants were also more than 3 times higher than that of the recipient strain, and the chitinase expression by the real time-PCR also showed increased expression of the chi1 in the yeast transformant. Expression of a chitinase which was produced at the mushroom autolysing stage of C. congregatus resulted in yeast growth inhibition.
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Citations
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Fang Wang, Fengzhu Li, Luyang Han, Jingzi Wang, Xupo Ding, Qinhong Liu, Mingguo Jiang, Hailin Li
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Palanisamy Athiyaman Balakumaran, Jan Förster, Martin Zimmermann, Jayachandran Charumathi, Andreas Schmitz, Eik Czarnotta, Mathias Lehnen, Suresh Sudarsan, Birgitta E. Ebert, Lars Mathias Blank, Sankaranarayanan Meenakshisundaram
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Yeeun Yoo, Hyoung T. Choi
The Korean Journal of Microbiology.2013; 49(4): 309. CrossRef - Growth Inhibition of Plant Pathogenic Fungi by a Chitinase of Coprinellus congregatus
Yuri Kang, Hyoung T. Choi
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- A Simple Colorimetric Method for Testing Antimicrobial Susceptibility of Biofilmed Bacteria
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- J. Microbiol. 2010;48(5):709-711. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0299-z
- 260 View
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Abstract
PDF
- This study introduces a simple colorimetric method which can measure the antimicrobial susceptibility of bacteria in biofilms using trimethyl tetrazolium chloride (TTC) as an indicator of viable bacteria. The new method was utilized for the evaluation of antibiotic susceptibility of Escherichia coli, Klebsiella pneumoniae, and Staphylococcus aureus biofilms.
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- Ji-Hee Kang , Sung-Il Yun , Han-Oh Park
- J. Microbiol. 2010;48(5):712-714. Published online November 3, 2010
- DOI: https://doi.org/10.1007/s12275-010-0363-8
- 1,802 View
- 3 Download
- 98 Crossref
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Abstract
PDF
- We investigated the weight-gain suppressive effect of Lactobacillus gasseri BNR17 isolated from human breast milk. Rats were fed a high-carbohydrate diet and administered BNR17 (BNR17 group) twice daily for twelve weeks. Changes were observed in body weight and white adipose tissue mass. The percent increase in body weight (P=0.0331) and fat pad mass (P<0.01) was significantly lower in the BNR17 group, and the FER was moderately lower (P=0.0769). These data suggest that BNR17 can prevent diet-induced overweight and may become an alternative method for treating weight problems and obesity.
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