Journal of Microbiology

Volume 57(9); September 2019

Review

MINIREVIEW] Fungi in salterns: Dawoon Chung† , Haryun Kim† , Hyun Seok Choi; J. Microbiol. 2019;57(9):717-724. Published online August 27, 2019; DOI: https://doi.org/10.1007/s12275-019-9195-3

47 View
0 Download
49 Web of Science
46 Crossref

Salterns are hypersaline extreme environments with unique physicochemical properties such as a salinity gradient. Although the investigation of microbiota in salterns has focused on archaea and bacteria, diverse fungi also thrive in the brine and soil of salterns. Fungi isolated from salterns are represented by black yeasts (Hortaea werneckii, Phaeotheca triangularis, Aureobasidium pullulans, and Trimmatostroma salinum), Cladosporium, Aspergillus, and Penicillium species. Most studies on saltern-derived fungi gave attention to black yeasts and their physiological characteristics, including growth under various culture conditions. Since then, biochemical and molecular tools have been employed to explore adaptation of these fungi to salt stress. Genome databases of several fungi in salterns are now publicly available and being used to elucidate salt tolerance mechanisms and discover the target genes for agricultural and industrial applications. Notably, the number of enzymes and novel metabolites known to be produced by diverse saltern-derived fungi has increased significantly. Therefore, fungi in salterns are not only interesting and important subjects to study fungal biodiversity and adaptive mechanisms in extreme environments, but also valuable bioresources with potential for biotechnological applications.

Citations

Citations to this article as recorded by

Succession of bacterial and fungal communities during the mud solarization of salt-making processing in a 1000-year-old marine solar saltern
Ya-Li Wei, Zi-Jie Long, Zhen-Dong Li, Ming-Xun Ren
Applied Soil Ecology.2024; 198: 105392. CrossRef
Overgrowth of filamentous fungi in halophilic activated granule sludge reactivated after refrigeration: Insights into bacterial-fungal interactions
Ji-Lin Huang, You-Wei Cui, Chen Chen
Chemical Engineering Journal.2024; 482: 148859. CrossRef
Production and characterization of novel marine black yeast’s exopolysaccharide with potential antiradical and anticancer prospects
Eman H. Zaghloul, Hala H. Abdel-Latif, Asmaa Elsayis, Sahar W.M. Hassan
Microbial Cell Factories.2024;[Epub] CrossRef
Biotechnological potential of salt tolerant and xerophilic species of Aspergillus
István Pócsi, Jan Dijksterhuis, Jos Houbraken, Ronald P. de Vries
Applied Microbiology and Biotechnology.2024;[Epub] CrossRef
Species diversity of xerophilic Aspergillus and Penicillium in marine surface waters revealed by isolation using osmophilic medium
RYO HAGIUDA, DAI HIROSE
Journal of Microorganism Control.2024; 29(1): 17. CrossRef
Fungi of Great Salt Lake, Utah, USA: a spatial survey
David L. Parrott, Bonnie K. Baxter
Frontiers in Fungal Biology.2024;[Epub] CrossRef
First Data on the Investigation of Gut Yeasts in Hermit Beetle (Osmoderma barnabita Motschulsky, 1845) Larvae in Lithuania
Jurgita Švedienė, Vita Raudonienė, Goda Mizerienė, Jolanta Rimšaitė, Sigitas Algis Davenis, Povilas Ivinskis
Journal of Fungi.2024; 10(7): 442. CrossRef
Black yeasts in hypersaline conditions
Cene Gostinčar, Nina Gunde-Cimerman
Applied Microbiology and Biotechnology.2024;[Epub] CrossRef
Biocontrol Potential of Sodin 5, Type 1 Ribosome-Inactivating Protein from Salsola soda L. Seeds
Monika Novak Babič, Sara Ragucci, Adrijana Leonardi, Miha Pavšič, Nicola Landi, Igor Križaj, Nina Gunde-Cimerman, Kristina Sepčić, Antimo Di Maro
Biomolecules.2024; 14(3): 336. CrossRef
Revealing the Mechanism of Aroma Production Driven by High Salt Stress in Trichomonascus ciferrii WLW
Fangying Xian, Lin Yang, Huaqing Ye, Jinlin Xu, Xiaoping Yue, Xiaolan Wang
Foods.2024; 13(11): 1593. CrossRef
The Fungal Side of the Story: Saprotrophic- vs. Symbiotrophic-Predicted Ecological Roles of Fungal Communities in Two Meromictic Hypersaline Lakes from Romania
Cristina Mircea, Ioana Rusu, Erika Andrea Levei, Adorján Cristea, Ionuț Mădălin Gridan, Adrian Vasile Zety, Horia Leonard Banciu
Microbial Ecology.2024;[Epub] CrossRef
Hidden Treasure: Halophilic Fungi as a Repository of Bioactive Lead Compounds
Shivankar Agrawal, Pruthviraj Chavan, Laurent Dufossé
Journal of Fungi.2024; 10(4): 290. CrossRef
Multi-functional xylanase from Aspergillus sydowii : biosynthesis of nanoconjugates, optimization by Taguchi approach and biodeinking potential
J. A. Elegbede, A. Lateef, E. B. Gueguim-Kana, L. S. Beukes, N. Matyumza
Preparative Biochemistry & Biotechnology.2024; 54(5): 622. CrossRef
Secofumitremorgins C and D, a pair of atropisomers from saltern-derived fungus Aspergillus fumigatus GXIMD00544
Geng-Si Zhang, Hai-Yan Li, Li-Fen Liang, Chun-Qing Fu, Qin Yu, Kai Liu, Zhi-Wei Su, Dong-Mei Zhou, Cheng-Hai Gao, Xin-Ya Xu, Yong-Hong Liu
Journal of Asian Natural Products Research.2024; 26(9): 1049. CrossRef
Exploring Halobiome Resources for Developing Salt-Tolerant Crops: A Perspective Review
Tushar Khare, Monica Jamla, Vartika Mathur, Vinay Kumar
Journal of Plant Growth Regulation.2024; 43(7): 2137. CrossRef
Updates on the classification and numbers of marine fungi
Mark S. Calabon, E.B. Gareth Jones, Ka-Lai Pang, Mohamed A. Abdel-Wahab, Jing Jin, Bandarupalli Devadatha, Resurreccion B. Sadaba, Carlo Chris Apurillo, Kevin D. Hyde
Botanica Marina.2023; 66(4): 213. CrossRef
Isolation and characterization of halophilic and halotolerant fungi from man-made solar salterns in Pattani Province, Thailand
Lakkhana Kanhayuwa Wingfield, Ninadia Jitprasitporn, Nureeda Che-alee, William C. Nierman
PLOS ONE.2023; 18(2): e0281623. CrossRef
A comparative study using response surface methodology and artificial neural network towards optimized production of melanin by Aureobasidium pullulans AKW
WesamEldin I. A. Saber, Abeer A. Ghoniem, Fatimah O. Al-Otibi, Mohammed S. El-Hersh, Noha M. Eldadamony, Farid Menaa, Khaled M. Elattar
Scientific Reports.2023;[Epub] CrossRef
Fungal Diversity and Its Relationship with Environmental Factors in Coastal Sediments from Guangdong, China
Keyue Wu, Yongchun Liu, Xinyu Liao, Xinyue Yang, Zihui Chen, Li Mo, Saiyi Zhong, Xiaoyong Zhang
Journal of Fungi.2023; 9(1): 101. CrossRef
Static magnetic field increases aerobic nitrogen removal from hypersaline wastewater in activated sludge with coexistence of fungi and bacteria
Jun Chen, You-Wei Cui, Mei-Qi Huang, Hui-Juan Yan, Dong Li
Bioresource Technology.2023; 382: 129194. CrossRef
Marine fungi: A treasure trove of novel natural products and for biological discovery
Frank Kempken, Mary Ann Jabra-Rizk
PLOS Pathogens.2023; 19(9): e1011624. CrossRef
They too serve who tolerate and survive: the need to study halotolerant fungi to appreciate their role in saline ecosystems
T.S. Suryanarayanan, J.P. Ravishankar
Fungal Biology Reviews.2023; 46: 100328. CrossRef
Solar Salterns and Pollution: Valorization of Some Endemic Species as Sentinels in Ecotoxicology
Wassim Guermazi, Neila Annabi-Trabelsi, Genuario Belmonte, Kais Guermazi, Habib Ayadi, Vincent Leignel
Toxics.2023; 11(6): 524. CrossRef
Response of the obligate halophile fungus Aspergillus loretoensis to stress salinity
Amelia Portillo López, Sophia González Martínez, Edgar A López Landavery, Alma R Cabazos-Marín, Alejandro Sánchez González
Journal of Microbiology & Experimentation.2023; 11(1): 26. CrossRef
The Cytotoxic Properties of Extreme Fungi’s Bioactive Components—An Updated Metabolic and Omics Overview
Attila Kiss, Farhad Hariri Akbari, Andrey Marchev, Viktor Papp, Iman Mirmazloum
Life.2023; 13(8): 1623. CrossRef
Understanding Fungi in Glacial and Hypersaline Environments
Cene Gostinčar, Nina Gunde-Cimerman
Annual Review of Microbiology.2023; 77(1): 89. CrossRef
Potential of Halophilic Penicillium chrysogenum Isolated from Algerian Saline Soil to Produce Laccase on Olive Oil Wastes
Zeyneb Boucherit, Sigrid Flahaut, Brahim Djoudi, Toma-Nardjes Mouas, Aicha Mechakra, Souad Ameddah
Current Microbiology.2022;[Epub] CrossRef
Cladosporium spp. (Cladosporiaceae) isolated from Eucommia ulmoides in China
Si-Yao Wang, Yong Wang, Yan Li
MycoKeys.2022; 91: 151. CrossRef
Metagenomic analysis of the soil microbial composition and salt tolerance mechanism in Yuncheng Salt Lake, Shanxi Province
Feifeng Zeng, Yonghong Zhu, Dongling Zhang, Zengqiang Zhao, Quansheng Li, Panpan Ma, Guoli Zhang, Yuan Wang, Shenjie Wu, Sandui Guo, Guoqing Sun
Frontiers in Microbiology.2022;[Epub] CrossRef
Impact of key parameters involved with plant-microbe interaction in context to global climate change
Bharti Shree, Unnikrishnan Jayakrishnan, Shashi Bhushan
Frontiers in Microbiology.2022;[Epub] CrossRef
Microbial community and functional prediction during the processing of salt production in a 1000-year-old marine solar saltern of South China
Ya-Li Wei, Zi-Jie Long, Ming-Xun Ren
Science of The Total Environment.2022; 819: 152014. CrossRef
Culturomics remains a highly valuable methodology to obtain rare microbial diversity with putative biotechnological potential from two Portuguese salterns
Eduarda Almeida, Maria F. Carvalho, Olga M. Lage
Frontiers in Bioscience-Elite.2022;[Epub] CrossRef
Recent developments in the biology and biotechnological applications of halotolerant yeasts
Cecilia Andreu, Robert Zarnowski, Marcel⋅lí del Olmo
World Journal of Microbiology and Biotechnology.2022;[Epub] CrossRef
Suggested Sustainable Medical and Environmental Uses of Melanin Pigment From Halotolerant Black Yeast Hortaea werneckii AS1
Asmaa Elsayis, Sahar W. M. Hassan, Khaled M. Ghanem, Heba Khairy
Frontiers in Microbiology.2022;[Epub] CrossRef
Surviving in the Brine: A Multi-Omics Approach for Understanding the Physiology of the Halophile Fungus Aspergillus sydowii at Saturated NaCl Concentration
Irina Jiménez-Gómez, Gisell Valdés-Muñoz, Aldo Moreno-Ulloa, Yordanis Pérez-Llano, Tonatiuh Moreno-Perlín, Hortencia Silva-Jiménez, Fernando Barreto-Curiel, María del Rayo Sánchez-Carbente, Jorge Luis Folch-Mallol, Nina Gunde-Cimerman, Asunción Lago-Lestó
Frontiers in Microbiology.2022;[Epub] CrossRef
Optimization of melanin pigment production from the halotolerant black yeast Hortaea werneckii AS1 isolated from solar salter in Alexandria
Asmaa Elsayis, Sahar W. M. Hassan, Khaled M. Ghanem, Heba Khairy
BMC Microbiology.2022;[Epub] CrossRef
Fungal benzene carbaldehydes: occurrence, structural diversity, activities and biosynthesis
Huomiao Ran, Shu-Ming Li
Natural Product Reports.2021; 38(1): 240. CrossRef
Characterization of the Proteolytic Activity of a Halophilic Aspergillus reticulatus Strain SK1-1 Isolated from a Solar Saltern
Dawoon Chung, Woon-Jong Yu, Ji-Yeon Lim, Nam-Seon Kang, Yong-Min Kwon, Grace Choi, Seung-Sub Bae, Kichul Cho, Dae-Sung Lee
Microorganisms.2021; 10(1): 29. CrossRef
Re-examination of species limits in Aspergillus section Flavipedes using advanced species delimitation methods and description of four new species
Ž. Jurjević, J. Houbraken, F. Sklenář, M. Kolařík, M.C. Arendrup, K.M. Jørgensen, J.P.Z. Siqueira, J. Gené, T. Yaguchi, C.N. Ezekiel, C. Silva Pereira, V. Hubka
Studies in Mycology.2021; 99(1): 100120. CrossRef
Extremophilic Microorganisms in Central Europe
Vera Zgonik, Janez Mulec, Tina Eleršek, Nives Ogrinc, Polona Jamnik, Nataša Poklar Ulrih
Microorganisms.2021; 9(11): 2326. CrossRef
Novel species of Cladosporium from environmental sources in Spain
Isabel Iturrieta-González, Dania García, Josepa Gené
MycoKeys.2021; 77: 1. CrossRef
Fungal Diversity and Composition of the Continental Solar Saltern in Añana Salt Valley (Spain)
Maia Azpiazu-Muniozguren, Alba Perez, Aitor Rementeria, Irati Martinez-Malaxetxebarria, Rodrigo Alonso, Lorena Laorden, Javier Gamboa, Joseba Bikandi, Javier Garaizar, Ilargi Martinez-Ballesteros
Journal of Fungi.2021; 7(12): 1074. CrossRef
Salt to conserve: a review on the ecology and preservation of hypersaline ecosystems
Mattia Saccò, Nicole E. White, Chris Harrod, Gonzalo Salazar, Pablo Aguilar, Carolina F. Cubillos, Karina Meredith, Bonnie K. Baxter, Aharon Oren, Elena Anufriieva, Nickolai Shadrin, Yeri Marambio‐Alfaro, Víctor Bravo‐Naranjo, Morten E. Allentoft
Biological Reviews.2021; 96(6): 2828. CrossRef
Two new species of Cladosporium from leaf spots of Paris polyphylla in north-western Yunnan Province, China
Yue-Xin Xu, Hong-Wei Shen, Dan-Feng Bao, Zong-Long Luo, Hong-Yan Su, Yu-E Hao
Biodiversity Data Journal.2021;[Epub] CrossRef
Uncovered Microbial Diversity in Antarctic Cryptoendolithic Communities Sampling Three Representative Locations of the Victoria Land
Claudia Coleine, Nuttapon Pombubpa, Laura Zucconi, Silvano Onofri, Benedetta Turchetti, Pietro Buzzini, Jason E. Stajich, Laura Selbmann
Microorganisms.2020; 8(6): 942. CrossRef
Halophiles and Their Biomolecules: Recent Advances and Future Applications in Biomedicine
Paulina Corral, Mohammad A. Amoozegar, Antonio Ventosa
Marine Drugs.2019; 18(1): 33. CrossRef

Journal Articles

Aeromicrobium endophyticum sp. nov., an endophytic actinobacterium isolated from reed (Phragmites australis): Fei-Na Li , Shui-Lin Liao , Shao-Wei Liu , Tao Jin , Cheng-Hang Sun; J. Microbiol. 2019;57(9):725-731. Published online May 23, 2019; DOI: https://doi.org/10.1007/s12275-019-8705-7

48 View
0 Download
21 Web of Science
16 Crossref

Abstract

A Gram-staining-positive, motile and short-rod-shaped actinobacterium designated 9W16Y-2T was isolated from surface- sterilized leaves of reed (Phragmites australis) collected from Taklamakan Desert in Xinjiang Uygur Autonomous Region, China. Colonies were pale greenish yellow, circular, smooth, and convex. The 16S rRNA gene sequence of strain 9W16Y-2T exhibited highest sequence similarities with Aeromicrobium camelliae CGMCC 1.12942T (99.0%) and Aeromicrobium erythreum NRRL B-3381T (97.2%). Phylogenetic analyses based on 16S rRNA gene sequences and single-copy phylogenetic marker genes (pMGs) showed that strain 9W16Y- 2T belonged to the genus Aeromicrobium and formed a monophyletic clade with Aeromicrobium camelliae CGMCC 1.12942T. Furthermore, average nucleotide identity (ANI) and DNA-DNA hybridization (DDH) clearly separated strain 9W16Y-2T from the other species of the genus Aeromicrobium with values below the thresholds for species delineation. The G+C content of the genomic DNA is 68.9 mol%. The diagnostic diamino acid of the cell-wall peptidoglycan was LLdiaminopimelic acid. The predominant menaquinone was MK-9(H4). The major fatty acids (> 10% of the total fatty acids) were C18:0 10-methyl (TBSA) (28.2%), C16:0 (21.0%), C16:0 2-OH (20.8%) and C18:1 ω9c (12.8%). The polar lipid profile comprised diphosphatidylglycerol, phosphatidylglycerol, phosphatidylcholine, phosphatidylinositol, an unidentified aminophospholipid and an unidentified lipid. Based on the phylogenic, phenotypic and chemotaxonomic features, strain 9W16Y-2T represents a novel species of the genus Aeromicrobium, for which the name Aeromicrobium endophyticum sp. nov. is proposed. The type strain is 9W16Y-2T (= CGMCC 1.13876T = JCM 33141T).

Citations

Citations to this article as recorded by

Solibacillus palustris sp. nov., isolated from wetland soil of ecology park
Jung-Hun Jo, Soon-Youl Lee, Moon-Soo Rhee, Kang-Hyun Lee, Se-Yoon Chun, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology .2024;[Epub] CrossRef
Ruegeria spongiae sp. nov., isolated from Callyspongia elongata
Seung-Min Han, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef
Ramlibacter paludis sp. nov., isolated from wetland
Ji-Eun Lim, Jung-Hun Jo, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef
Paludibacterium denitrificans sp. nov., a Novel Denitrifying Bacterium Isolated from Activated Sludge
Ji Eun Lee, Gyu-Min Choi, Yong-Jae Lee, Sang-Mi Lee, Soon Youl Lee, Wan-Taek Im
Current Microbiology.2022;[Epub] CrossRef
Histidinibacterium aquaticum sp. nov., Isolated from Salt-Field Sea Water
Kyu-Hang Lee, Jin-Sook Park
Current Microbiology.2022;[Epub] CrossRef
Parashewanella hymeniacidonis sp. nov., isolated from marine sponge (Hymeniacidon sinapium)
Soo-Bin Kim, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
Renewed interests in the discovery of bioactive actinomycete metabolites driven by emerging technologies
Jenifer Ossai, Behnam Khatabi, S. Eric Nybo, Madan K. Kharel
Journal of Applied Microbiology.2022; 132(1): 59. CrossRef
Bioprospecting of Soil-Derived Actinobacteria Along the Alar-Hotan Desert Highway in the Taklamakan Desert
Shaowei Liu, Ting Wang, Qinpei Lu, Feina Li, Gang Wu, Zhongke Jiang, Xugela Habden, Lin Liu, Xiaolin Zhang, Dmitry A. Lukianov, Ilya A. Osterman, Petr V. Sergiev, Olga A. Dontsova, Chenghang Sun
Frontiers in Microbiology.2021;[Epub] CrossRef
Chryseobacterium panacisoli sp. nov., isolated from ginseng-cultivation soil with ginsenoside-converting activity
Dong Ho Keum, Jun Mo Yeon, Chan-Seok Yun, Soon Youl Lee, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef
Flagellimonas hymeniacidonis sp. nov., Isolated from the Sponge Hymeniacidon sinapium
Tae-Gi Shin, Jin-Sook Park
Current Microbiology.2021; 78(3): 1061. CrossRef
Vibrio ulleungensis sp. nov., isolated from Mytilus coruscus
Yea-Lin Moon, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef
Actinobacteria From Desert: Diversity and Biotechnological Applications
Feiyang Xie, Wasu Pathom-aree
Frontiers in Microbiology.2021;[Epub] CrossRef
Aeromicrobium chenweiae sp. nov. and Aeromicrobium yanjiei sp. nov., isolated from Tibetan antelope (Pantholops hodgsonii) and plateau pika (Ochotona curzoniae), respectively
Junqin Li, Wenjing Lei, Jing Yang, Shan Lu, Dong Jin, Xin-He Lai, Sihui Zhang, Yanpeng Cheng, Fei Mi, Yuyuan Huang, Ji Pu, Kui Dong, Zhi Tian, Xiaomin Wu, Ying Huang, Suping Wang, Jianguo Xu
International Journal of Systematic and Evolutionary Microbiology .2020; 70(8): 4683. CrossRef
Hydrogenophaga borbori sp. nov., isolated from activated sludge
Gyu-min Choi, Soon Youl Lee, Sang Yong Kim, Ji-Hyang Wee, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology .2020; 70(1): 555. CrossRef
Ochrobactrum soli sp. nov., Isolated from a Korean Cattle Farm
Gyu-Min Choi, Kyung Min Kim, Chan-Seok Yun, Soon Youl Lee, Sang Yong Kim, Ji-Hyang Wee, Wan-Taek Im
Current Microbiology.2020; 77(6): 1104. CrossRef
Comparative Lipidomic Analysis of Extracellular Vesicles Derived from Lactobacillus plantarum APsulloc 331261 Living in Green Tea Leaves Using Liquid Chromatography-Mass Spectrometry
Hyoseon Kim, Minjung Kim, Kilsun Myoung, Wanil Kim, Jaeyoung Ko, Kwang Pyo Kim, Eun-Gyung Cho
International Journal of Molecular Sciences.2020; 21(21): 8076. CrossRef

Arthrobacter dokdonellae sp. nov., isolated from a plant of the genus Campanula: Hyeon-Woo Koh , Myung-Suk Kang , Ki-Eun Lee , Eun-Young Lee , Hongik Kim , Soo-Je Park; J. Microbiol. 2019;57(9):732-737. Published online May 11, 2019; DOI: https://doi.org/10.1007/s12275-019-8540-x

47 View
0 Download
5 Web of Science
4 Crossref

Abstract

A Gram-stain-positive, oxidase- and catalase-positive, motile, aerobic, and rod-shaped bacterial strain, designated as DCT-5T, was isolated from a native plant belonging to the genus Campanula at Dokdo island, Republic of Korea. Growth of the strain DCT-5T was observed at 15–37°C (optimum 30°C) on R2A broth, pH 6.0–8.0 (optimum 7.0), and 0–5% (w/v) NaCl concentration (optimum 0%). The 16S rRNA gene sequence analysis revealed that strain DCT-5T was most closely related to Arthrobacter silviterrae KIS14-16T, Arthrobacter livingstonensis LI2T, Arthrobacter stackebrandtii CCM 2783T, Arthrobacter cryoconiti Cr6-08T, Arthrobacter ramosus CCM 1646T, and Arthrobacter psychrochitiniphilus GP3T with pairwise sequence similarities of 98.76%, 97.47%, 97.25%, 97.11%, 97.11%, and 97.00%, respectively. The DNA G+C content of strain DCT-5T was 64.7 mol%, and its DNA–DNA relatedness values with A. silviterrae KIS14-16T, A. livingstonensis LI2T, A. stackebrandtii CCM 2783T, A. psychrochitiniphilus GP3T, A. ramosus CCM 1646T, and A. cryoconiti Cr6-08T were 32.57 ± 2.02%, 28.75 ± 0.88%, 31.93 ± 1.15%, 34.73 ± 1.86%, 29.12 ± 1.56%, and 27.23 ± 0.88%, respectively. The major quinone was MK-9(H2) and major fatty acids were anteiso-C15:0, anteiso-C17:0, iso-C15:0, and iso-C16:0. The polar lipids were diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylinositol (PI), unidentified glycolipid (GL), two unidentified aminophospholipids (APLs), and three unidentified lipids (Ls). The peptidoglycan type was A3α. On the basis of phenotypic, phylogenetic, genotypic, and chemotaxonomic characteristics, strain DCT-5T represents a novel species of the genus Arthrobacter, for which the name Arthrobacter dokdonellae sp. nov. is proposed. The type strain is DCT-5T (= KCTC 49189T = LMG 31284T).

Citations

Citations to this article as recorded by

Biodegradation of dimethachlon by Arthrobacter sp. K5: Mechanistic insights and ecological implications
Zhenyu Qian, Yingpei Wang, Peicheng Lu, Minghui Wu, Haipeng Xie, Xiangyi Kong, Xiaoyan Wu, Shunli Hu
Journal of Environmental Chemical Engineering.2024; 12(6): 114473. CrossRef
Microbial adaptation to different environmental conditions: molecular perspective of evolved genetic and cellular systems
Atif Khurshid Wani, Nahid Akhtar, Farooq Sher, Acacio Aparecido Navarrete, Juliana Heloisa Pinê Américo-Pinheiro
Archives of Microbiology.2022;[Epub] CrossRef
Arthrobacter sunyaminii sp. nov. and Arthrobacter jiangjiafuii sp. nov., new members in the genus Arthrobacter
Gui Zhang, Jing Yang, Dong Jin, Xin-He Lai, Shan Lu, Zhihong Ren, Tian Qin, Liyun Liu, Ji Pu, Yue Liu, Lin Ye, Juan Zhou, Xianglian Lv, Yuanmeihui Tao, Jianguo Xu
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
Genotype to ecotype in niche environments: adaptation of Arthrobacter to carbon availability and environmental conditions
Sara Gushgari-Doyle, Lauren M Lui, Torben N Nielsen, Xiaoqin Wu, Ria G Malana, Andrew J Hendrickson, Heloise Carion, Farris L Poole, Michael W W Adams, Adam P Arkin, Romy Chakraborty
ISME Communications.2022;[Epub] CrossRef

Reduction of selenite to elemental Se(0) with simultaneous degradation of phenol by co-cultures of Phanerochaete chrysosporium and Delftia lacustris: Samayita Chakraborty , Eldon R. Rene , Piet N. L. Lens; J. Microbiol. 2019;57(9):738-747. Published online August 3, 2019; DOI: https://doi.org/10.1007/s12275-019-9042-6

47 View
0 Download
7 Web of Science
8 Crossref

Abstract

The simultaneous removal of phenol and selenite from synthetic wastewater was investigated by adopting two different co-culturing techniques using the fungus Phanerochaete chrysosporium and the bacterium Delftia lacustris. Separately grown biomass of the fungus and the bacterium (suspended co-culture) was incubated with different concentrations of phenol (0–1,200 mg/L) and selenite (10 mg/L). The selenite ions were biologically reduced to extracellular Se(0) nanoparticles (3.58 nm diameter) with the simultaneous degradation of up to 800 mg/L of phenol. Upon growing the fungus and the bacterium together using an attached growth co-culture, the bacterium grew as a biofilm onto the fungus. The extracellularly produced Se(0) in the attached growth co-culture had a minimum diameter of 58.5 nm. This co-culture was able to degrade completely 50 mg/L phenol, but was completely inhibited at a phenol concentration of 200 mg/L.

Citations

Citations to this article as recorded by

Using Fungi in Artificial Microbial Consortia to Solve Bioremediation Problems
Elena Efremenko, Nikolay Stepanov, Olga Senko, Aysel Aslanli, Olga Maslova, Ilya Lyagin
Microorganisms.2024; 12(3): 470. CrossRef
Review on environmental selenium: Occurrence, public health implications and biological treatment strategies
Adhena Ayaliew Werkneh, Gebretsadkan Gebremedhin Gebretsadik, Shifare Berhe Gebru
Environmental Challenges.2023; 11: 100698. CrossRef
Simultaneous bioreduction of tellurite and selenite by Yarrowia lipolytica, Trichosporon cutaneum, and their co-culture along with characterization of biosynthesized Te–Se nanoparticles
Firooz Hosseini, Maryam Hadian, Elham Lashani, Hamid Moghimi
Microbial Cell Factories.2023;[Epub] CrossRef
Simultaneous bioremediation of phenol and tellurite by Lysinibacillus sp. EBL303 and characterization of biosynthesized Te nanoparticles
Firooz Hosseini, Elham Lashani, Hamid Moghimi
Scientific Reports.2023;[Epub] CrossRef
Selenium-Containing Nanostructures: Synthesis, Properties, and Agrochemical Aspects of Application (Review)
A. I. Perfileva
Nanobiotechnology Reports.2022; 17(2): 165. CrossRef
Biological selenate and selenite reduction by waste activated sludge using hydrogen as electron donor
Arindam Sinharoy, Piet N.L. Lens
Journal of Environmental Management.2022; 319: 115745. CrossRef
Leucobacter coleopterorum sp. nov., Leucobacter insecticola sp. nov., and Leucobacter viscericola sp. nov., isolated from the intestine of the diving beetles, Cybister brevis and Cybister lewisianus, and emended description of the genus Leucobacter
Dong-Wook Hyun, Hojun Sung, Pil Soo Kim, Ji-Hyun Yun, Jin-Woo Bae
Journal of Microbiology.2021; 59(4): 360. CrossRef
Biological Removal of Selenate and Selenite from Wastewater: Options for Selenium Recovery as Nanoparticles
Arindam Sinharoy, Piet N. L. Lens
Current Pollution Reports.2020; 6(3): 230. CrossRef

Characteristics of the gut microbiota colonization, inflammatory profile, and plasma metabolome in intrauterine growth restricted piglets during the first 12 hours after birth: Shimeng Huang , Na Li , Cong Liu , Tiantian Li , Wei Wang , Lili Jiang , Zhen Li , Dandan Han , Shiyu Tao , Junjun Wang; J. Microbiol. 2019;57(9):748-758. Published online June 11, 2019; DOI: https://doi.org/10.1007/s12275-019-8690-x

51 View
0 Download
43 Web of Science
43 Crossref

Abstract

Intrauterine growth restriction (IUGR) predisposes newborns to inflammatory and metabolic disturbance. Disequilibrium of gut microbiota in early life has been implicated in the incidence of inflammation and metabolic diseases in adulthood. This study aimed to investigate the difference in gut microbiota colonization, cytokines and plasma metabolome between IUGR and normal birth weight (NBW) piglets in early life. At birth, reduced (P < 0.05) body, jejunum, and ileum weights, as well as decreased (P < 0.05) small intestinal villi and increased (P < 0.05) ileal crypt depth were observed in IUGR piglets compared with their NBW counterparts. Imbalanced inflammatory and plasma metabolome profile was observed in IUGR piglets. Furthermore, altered metabolites were mainly involved in fatty acid metabolism and inflammatory response. At 12 h after birth and after suckling colostrum, reduced (P < 0.05) postnatal growth and the small intestinal maturation retardation (P < 0.05) continued in IUGR piglets in comparison with those in NBW littermates. Besides, the gut microbiota structure was significantly altered by IUGR. Importantly, the disruption of the inflammatory profile and metabolic status mainly involved the pro-inflammatory cytokines (IL-1β and IFN-γ) and amino acid metabolism. Moreover, spearman correlation analysis showed that the increased abundance of Escherichia-Shigella and decreased abundance of Clostridium_sensu_stricto_1 in IUGR piglets was closely associated with the alterations of slaughter weight, intestinal morphology, inflammatory cytokines, and plasma metabolites. Collectively, IUGR significantly impairs small intestine structure, modifies gut microbiota colonization, and disturbs inflammatory and metabolic profiles during the first 12 h after birth. The unbalanced gut microbiota mediated by IUGR contributes to the development of inflammation and metabolic diseases.

Citations

Citations to this article as recorded by

Endoplasmic Reticulum Stress Contributes to Intestinal Injury in Intrauterine Growth Restriction Newborn Piglets
Tingting Fang, Gang Tian, Daiwen Chen, Jun He, Ping Zheng, Xiangbing Mao, Hui Yan, Bing Yu
Animals.2024; 14(18): 2677. CrossRef
Characterization of the chemical composition of different parts of Dolichos lablab L. and revelation of its anti-ulcerative colitis effects by modulating the gut microbiota and host metabolism
Yanping Gao, Ruiting Huang, Yongyi Qiu, Yi Liu, Lei Chen
Journal of Ethnopharmacology.2024; 322: 117629. CrossRef
Plant-Derived Polysaccharides Benefit Weaned Piglets by Regulating Intestinal Microbiota: A Review
Xiaoyan Huang, Faming Jiang, Xingying Chen, Yuanhua Xian
Journal of Agricultural and Food Chemistry.2024; 72(51): 28225. CrossRef
Maternal Supplementation with Ornithine Promotes Placental Angiogenesis and Improves Intestinal Development of Suckling Piglets
Yun Yang, Guanyu Hou, Fengjie Ji, Hanlin Zhou, Renlong Lv, Chengjun Hu
Animals.2024; 14(5): 689. CrossRef
Dietary supplementation with dihydroartemisinin improves intestinal barrier function in weaned piglets with intrauterine growth retardation by modulating the gut microbiota
Yu Niu, Ruiqiang Zhang, Caimei Yang, Jintian He, Tian Wang
Journal of Animal Science.2024;[Epub] CrossRef
Phosphatidylethanolamine Improves Postnatal Growth Retardation by Regulating Mucus Secretion of Intestinal Goblet Cells in Piglets
Nan Wang, Chengming Wang, Ming Qi, Xingtong Lin, Andong Zha, Bie Tan, Yulong Yin, Jing Wang
Animals.2024; 14(8): 1193. CrossRef
Microbiota intestinal en recién nacidos prematuros con restricción del crecimiento intrauterino
Lizbeth Miranda-García, Francisco Josué Fernández-Becerra, Paulina Briseño-Sahagun
Revista Mexicana de Pediatría.2024; 91(2): 72. CrossRef
Gut microbiota-derived ursodeoxycholic acid alleviates low birth weight-induced colonic inflammation by enhancing M2 macrophage polarization
Yu Pi, Yujun Wu, Xiangyu Zhang, Dongdong Lu, Dandan Han, Jiangchao Zhao, Xiaojiao Zheng, Shiyi Zhang, Hao Ye, Shuai Lian, Yu Bai, Zhenyu Wang, Shiyu Tao, Dongjiao Ni, Xinhua Zou, Wei Jia, Guolong Zhang, Defa Li, Junjun Wang
Microbiome.2023;[Epub] CrossRef
Oil source regulates intestinal health of hybrid grouper (♀ Epinephelus fuscoguttatus × ♂ E. lanceolatu): Structure, inflammation and microorganisms homeostasis
Xiaobo Yan, Hao Liu, Simiao Pan, Beiping Tan, Shuang Zhang, Hongyu Liu, Shuyan Chi, Qihui Yang, Yuanzhi Yang, Xiaohui Dong
Aquaculture.2023; 565: 739121. CrossRef
Dietary phytosterols supplementation improves the growth performance and decreases the abdominal fat of broiler chickens by regulating intestinal epithelial structure and microbiota
Hongjian Dai, Jian Gao, Yi Zhang, Haoze Wu, Yuqi Li, Zhanying Sun, Donghai Lv, Weiyun Zhu, Yanfen Cheng
Animal Feed Science and Technology.2023; 305: 115786. CrossRef
Gut Microbiota, Inflammation, and Probiotic Supplementation in Fetal Growth Restriction—A Comprehensive Review of Human and Animal Studies
Naser A. Alsharairi, Li Li
Life.2023; 13(12): 2239. CrossRef
Gut microbiota bridges dietary nutrients and host immunity
Lijuan Fan, Yaoyao Xia, Youxia Wang, Dandan Han, Yanli Liu, Jiahuan Li, Jie Fu, Leli Wang, Zhending Gan, Bingnan Liu, Jian Fu, Congrui Zhu, Zhenhua Wu, Jinbiao Zhao, Hui Han, Hao Wu, Yiwen He, Yulong Tang, Qingzhuo Zhang, Yibin Wang, Fan Zhang, Xin Zong,
Science China Life Sciences.2023; 66(11): 2466. CrossRef
Supplemental Clostridium butyricum modulates lipid metabolism by reshaping the gut microbiota composition and bile acid profile in IUGR suckling piglets
Xin Zhang, Yang Yun, Zheng Lai, Shuli Ji, Ge Yu, Zechen Xie, Hao Zhang, Xiang Zhong, Tian Wang, Lili Zhang
Journal of Animal Science and Biotechnology.2023;[Epub] CrossRef
Dietary bile acid supplementation in weaned piglets with intrauterine growth retardation improves colonic microbiota, metabolic activity, and epithelial function
Yang Liu, Md. Abul Kalam Azad, Sujuan Ding, Qian Zhu, Francois Blachier, Zugong Yu, Haijun Gao, Xiangfeng Kong
Journal of Animal Science and Biotechnology.2023;[Epub] CrossRef
Dousing the flame: reviewing the mechanisms of inflammatory programming during stress-induced intrauterine growth restriction and the potential for ω-3 polyunsaturated fatty acid intervention
Melanie R. White, Dustin T. Yates
Frontiers in Physiology.2023;[Epub] CrossRef
Metabolic Alternations During Gestation in Dezhou Donkeys and the Link to the Gut Microbiota
Yan Li, Qingshan Ma, Guiqin Liu, Zhenwei Zhang, Yandong Zhan, Mingxia Zhu, Changfa Wang
Frontiers in Microbiology.2022;[Epub] CrossRef
High-fat and high-protein diets from different sources induce different intestinal malodorous gases and inflammation
Tingting Zhang, Beizhen Xie, Hong Liu
Food Research International.2022; 154: 110989. CrossRef
The Exploration of Fetal Growth Restriction Based on Metabolomics: A Systematic Review
Mengxin Yao, Zhuoqiao Yang, Xin Rong, Xuan Hu, Na Yao, Manting Zhu, Xinnan Wang, Xiaoyan Zhu, Jieyun Yin
Metabolites.2022; 12(9): 860. CrossRef
Short-Chain Fatty Acids Modulate Permeability, Motility and Gene Expression in the Porcine Fetal Jejunum Ex Vivo
Barbara U. Metzler-Zebeli, Simone Koger, Suchitra Sharma, Arife Sener-Aydemir, Ursula Ruczizka, Heinrich Kreutzmann, Andrea Ladinig
Nutrients.2022; 14(12): 2524. CrossRef
Intrauterine Growth Retardation Affects Intestinal Health of Suckling Piglets via Altering Intestinal Antioxidant Capacity, Glucose Uptake, Tight Junction, and Immune Responses
Xiaopeng Tang, Kangning Xiong, Juan Gambini
Oxidative Medicine and Cellular Longevity.2022; 2022: 1. CrossRef
Intrauterine growth retardation affects liver bile acid metabolism in growing pigs: effects associated with the changes of colonic bile acid derivatives
Yang Liu, Md. Abul Kalam Azad, Wanghong Zhang, Liang Xiong, Francois Blachier, Zugong Yu, Xiangfeng Kong
Journal of Animal Science and Biotechnology.2022;[Epub] CrossRef
Unfavourable intrauterine environment contributes to abnormal gut microbiome and metabolome in twins
Jing Yang, Lingling Hou, Jinfeng Wang, Liwen Xiao, Jinyang Zhang, Nanlin Yin, Su Yao, Kun Cheng, Wen Zhang, Zhonghua Shi, Jing Wang, Hai Jiang, Nana Huang, Yanxia You, Mingmei Lin, Ruiyan Shang, Yuan Wei, Yangyu Zhao, Fangqing Zhao
Gut.2022; 71(12): 2451. CrossRef
Uteroplacental Insufficiency Causes Microbiota Disruption and Lung Development Impairment in Growth-Restricted Newborn Rats
Yu-Chen S. H. Yang, Hsiu-Chu Chou, Yun-Ru Liu, Chung-Ming Chen
Nutrients.2022; 14(20): 4388. CrossRef
Zinc Oxide Nanoparticle Improves the Intestinal Function of Intrauterine Growth Retardation Finishing Pigs via Regulating Intestinal Morphology, Inflammation, Antioxidant Status and Autophagy
Binbin Zhou, Jiaqi Zhang, Huijuan Liu, Shun Chen, Tian Wang, Chao Wang
Frontiers in Veterinary Science.2022;[Epub] CrossRef
The validation of the existence of the entero-mammary pathway and the assessment of the differences of the pathway between first and third parity sows
Laura L Greiner, Dalton C Humphrey, Shayla N Holland, C J Anderson, Stephan Schmitz-Esser
Translational Animal Science.2022;[Epub] CrossRef
Characteristics of the gut microbiota in pregnant women with fetal growth restriction
Xinzhi Tu, Chun Duan, Bingying Lin, Kangfeng Li, Jie Gao, Huaying Yan, Kejian Wang, Zhao Zhao
BMC Pregnancy and Childbirth.2022;[Epub] CrossRef
Melatonin-induced changes in the bovine vaginal microbiota during maternal nutrient restriction
Riley D Messman, Zully E Contreras-Correa, Henry A Paz, Caleb O Lemley
Journal of Animal Science.2021;[Epub] CrossRef
Drenching Bovine Colostrum, Quercetin or Fructo-Oligosaccharides Has No Effect on Health or Survival of Low Birth Weight Piglets
Kevin Van Tichelen, Sara Prims, Miriam Ayuso, Céline Van Kerschaver, Mario Vandaele, Jeroen Degroote, Steven Van Cruchten, Joris Michiels, Chris Van Ginneken
Animals.2021; 12(1): 55. CrossRef
Dietary dihydroartemisinin supplementation alleviates intestinal inflammatory injury through TLR4/NOD/NF-κB signaling pathway in weaned piglets with intrauterine growth retardation
Yu Niu, Yongwei Zhao, Jintian He, Yang Yun, Mingming Shen, Zhending Gan, Lili Zhang, Tian Wang
Animal Nutrition.2021; 7(3): 667. CrossRef
Effects of Bacillus subtilis on jejunal integrity, redox status, and microbial composition of intrauterine growth restriction suckling piglets
Yang Yun, Shuli Ji, Ge Yu, Peilu Jia, Yu Niu, Hao Zhang, Xin Zhang, Tian Wang, Lili Zhang
Journal of Animal Science.2021;[Epub] CrossRef
Management and Feeding Strategies in Early Life to Increase Piglet Performance and Welfare around Weaning: A Review
Laia Blavi, David Solà-Oriol, Pol Llonch, Sergi López-Vergé, Susana María Martín-Orúe, José Francisco Pérez
Animals.2021; 11(2): 302. CrossRef
Malnutrition, poor post-natal growth, intestinal dysbiosis and the developing lung
Mark A. Underwood, Satyan Lakshminrusimha, Robin H. Steinhorn, Stephen Wedgwood
Journal of Perinatology.2021; 41(8): 1797. CrossRef
The Effect of Dietary Protein Imbalance during Pregnancy on the Growth, Metabolism and Circulatory Metabolome of Neonatal and Weaned Juvenile Porcine Offspring
Quentin L. Sciascia, Cornelia Prehn, Jerzy Adamski, Gürbüz Daş, Iris S. Lang, Winfried Otten, Solvig Görs, Cornelia C. Metges
Nutrients.2021; 13(9): 3286. CrossRef
Differences in Intestinal Barrier Development between Intrauterine Growth Restricted and Normal Birth Weight Piglets
Jarosław Olszewski, Romuald Zabielski, Tomasz Skrzypek, Piotr Matyba, Małgorzata Wierzbicka, Antoni Adamski, Elżbieta Grzesiuk, Maria Sady, Zdzisław Gajewski, Karolina Ferenc
Animals.2021; 11(4): 990. CrossRef
Changes in Faecal Microbiota Profiles Associated With Performance and Birthweight of Piglets
Clare H. Gaukroger, Christopher J. Stewart, Sandra A. Edwards, John Walshaw, Ian P. Adams, Ilias Kyriazakis
Frontiers in Microbiology.2020;[Epub] CrossRef
Immunological Role of the Maternal Uterine Microbiome in Pregnancy: Pregnancies Pathologies and Alterated Microbiota
Jonah Bardos, Desiree Fiorentino, Ryan E. Longman, Michael Paidas
Frontiers in Immunology.2020;[Epub] CrossRef
Color of Colon Content of Normal and Intrauterine Growth-Restricted Weaned Piglets Is Associated with Specific Microbial Taxa and Physiological Parameters
Maria Wiese, Yan Hui, Dennis S. Nielsen, Andrew R. Williams, Julie C. Lynegaard, Nicolai R. Weber, Charlotte Amdi
Animals.2020; 10(6): 1073. CrossRef
The Human Breast Milk Metabolome in Preeclampsia, Gestational Diabetes, and Intrauterine Growth Restriction: Implications for Child Growth and Development
Flaminia Bardanzellu, Melania Puddu, Vassilios Fanos
The Journal of Pediatrics.2020; 221: S20. CrossRef
Are Larger Litters a Concern for Piglet Survival or An Effectively Manageable Trait?
Sophia A. Ward, Roy N. Kirkwood, Kate J. Plush
Animals.2020; 10(2): 309. CrossRef
Membrane proteomic analysis reveals the intestinal development is deteriorated by intrauterine growth restriction in piglets
Shimeng Huang, Cong Liu, Na Li, Zhenhua Wu, Tiantian Li, Dandan Han, Zhen Li, Jiangchao Zhao, Junjun Wang
Functional & Integrative Genomics.2020; 20(2): 277. CrossRef
How could metabolomics change pediatric health?
Flaminia Bardanzellu, Vassilios Fanos
Italian Journal of Pediatrics.2020;[Epub] CrossRef
Perturbation of the lipid metabolism and intestinal inflammation in growing pigs with low birth weight is associated with the alterations of gut microbiota
Shi-Meng Huang, Zhen-Hua Wu, Tian-Tian Li, Cong Liu, Dan-Dan Han, Shi-Yu Tao, Yu Pi, Na Li, Jun-Jun Wang
Science of The Total Environment.2020; 719: 137382. CrossRef
Intrauterine Growth Restriction: New Insight from the Metabolomic Approach
Elena Priante, Giovanna Verlato, Giuseppe Giordano, Matteo Stocchero, Silvia Visentin, Veronica Mardegan, Eugenio Baraldi
Metabolites.2019; 9(11): 267. CrossRef

Diluted conventional media improve the microbial cultivability from aquarium seawater: Jing Sun , Jiazhen Guo , Qian Yang , Jie Huang; J. Microbiol. 2019;57(9):759-768. Published online August 3, 2019; DOI: https://doi.org/10.1007/s12275-019-9175-7

44 View
0 Download
11 Web of Science
8 Crossref

Abstract

The cultivation of microbial species remains a primary challenge in microbiology and obtaining pure cultures is essential for the study of microbial physiology and function. When isolating microorganisms from aquaculture environments, Vibrio are the most dominate isolates on the media that are commonly used. In order to expand our ability to study microbial species, an easy-operation and low-cost medium that can reduce the interference of Vibrio strains and increase the cultivability of other bacteria is urgently needed. We compared viable cell counts on conventional media (CM; including Marine Agar 2216 and LB media) and diluted media (DM; including 1/10-Marine Agar 2216, 1/10-LB). We also assessed the diversity of cultivable microorganisms under high and low nutrient conditions by a plate-wash strategy coupled with high-throughput sequencing of the V4 hypervariable region of the 16S rRNA gene. The results show that microbial communities from DM, especially 1/10-Marine Agar 2216, are more diverse than those obtained from CM. Vibrio isolates were reduced on DM. PICRUSt analysis revealed that nutrient composition is a significant contributor to the diversity and function of the cultivable microbial communities. Bacteria grown on CM possess more pathogenic characteristics, whereas DM favors the growth of bacteria that have multiple metabolic functions. Collectively, our data provide strong evidence that dilution of CM influences the cultivability of bacteria from aquaculture seawater. It also supports that DM can expand the range of microbial species that can be cultivated. This study also provides insights for media design in microbial cultivation from aquaculture systems.

Citations

Citations to this article as recorded by

Unexpected methane oxidation acceleration by two species of bacteria from the rainwater promoting Methylomonas sp. in the soil
Yuxuan Sang, Jia Tang, Oumei Wang, Qinqin Hao, Shiling Zheng, Fanghua Liu
Journal of Environmental Chemical Engineering.2024; 12(5): 113895. CrossRef
Glucose addition improves the culture performance of Pacific white shrimp by regulating the assembly of Rhodobacteraceae taxa in gut bacterial community
Pengsheng Dong, Haipeng Guo, Lei Huang, Demin Zhang, Kai Wang
Aquaculture.2023; 567: 739254. CrossRef
Reaching unreachables: Obstacles and successes of microbial cultivation and their reasons
Gabriela Kapinusova, Marco A. Lopez Marin, Ondrej Uhlik
Frontiers in Microbiology.2023;[Epub] CrossRef
The Metabolomics Changes in Luria–Bertani Broth Medium under Different Sterilization Methods and Their Effects on Bacillus Growth
Haifeng Wang, Juan Guo, Xing Chen, Hongxuan He
Metabolites.2023; 13(8): 958. CrossRef
Conjugative Transfer of Acute Hepatopancreatic Necrosis Disease-Causing pVA1-Type Plasmid Is Mediated by a Novel Self-Encoded Type IV Secretion System
Dehao Wang, Liying Wang, Dexi Bi, Jipeng Song, Guohao Wang, Ye Gao, Kathy F. J. Tang, Fanzeng Meng, Jingmei Xie, Fan Zhang, Jie Huang, Jianliang Li, Xuan Dong, Jennifer M. Auchtung, Songzhe Fu
Microbiology Spectrum.2022;[Epub] CrossRef
Culturomics of Bacteria from Radon-Saturated Water of the World’s Oldest Radium Mine
Gabriela Kapinusova, Kunal Jani, Tereza Smrhova, Petr Pajer, Irena Jarosova, Jachym Suman, Michal Strejcek, Ondrej Uhlik, Jing Han
Microbiology Spectrum.2022;[Epub] CrossRef
Diluted Luria-Bertani medium vs. sewage sludge as growth media: comparison of community structure and diversity in the culturable bacteria
Kazuo Yamamoto, Shotaro Toya, Sarah Sabidi, Yuki Hoshiko, Toshinari Maeda
Applied Microbiology and Biotechnology.2021; 105(9): 3787. CrossRef
Plant Broth- (Not Bovine-) Based Culture Media Provide the Most Compatible Vegan Nutrition for In Vitro Culturing and In Situ Probing of Plant Microbiota
Hend Elsawey, Sascha Patz, Rahma A. Nemr, Mohamed S. Sarhan, Mervat A. Hamza, Hanan H. Youssef, Mohamed R. Abdelfadeel, Hassan-Sibroe A. Daanaa, Mahmoud El-Tahan, Mohamed Abbas, Mohamed Fayez, Katja Witzel, Silke Ruppel, Nabil A. Hegazi
Diversity.2020; 12(11): 418. CrossRef

Transcriptomic and proteomic profiling revealed global changes in Streptococcus thermophilus during pH-controlled batch fermentations: Yali Qiao , Cong Leng , Gefei Liu , Yanjiao Zhang , Xuepeng Lv , Hongyu Chen , Jiahui Sun , Zhen Feng; J. Microbiol. 2019;57(9):769-780. Published online June 14, 2019; DOI: https://doi.org/10.1007/s12275-019-8604-y

49 View
0 Download
11 Web of Science
11 Crossref

Abstract

Understanding global changes of physiological processes at the molecular level during the growth of Streptococcus thermophilus is essential for the rational design of cultivation media and the optimization of bioprocesses. Transcriptomics and proteomics were combined to investigate the global changes at the transcript and protein level during the growth of S. thermophilus. The expression of 1396 genes (FDR ≤ 0.001) and 876 proteins (P < 0.05) changed significantly over time. The most remarkable growth phase dependent changes occurred in the late-lag phase and were related to heterofermentation, glycolysis, peptidoglycan biosynthesis, conversion between amino acids and stress response. The present
results
could provide theoretical guidance for high-cell-density culture, help design cultivation media, and help attain a high biomass of S. thermophilus.

Citations

Citations to this article as recorded by

The contribution of microorganisms to sustainable development: towards a green future through synthetic biology and systems biology
Alaa T. Qumsani
Journal of Umm Al-Qura University for Applied Sciences.2024;[Epub] CrossRef
Multi-omics analysis for mechanistic understanding of microbial-mediated synthesis of silver nanoparticles
Wenjing Liu, Aofan Wang, Xitong Li, Jishi Wang, Xiaowei Liu, Yujie Zhao, Zeying He, Jingjing Du
Chemical Engineering Journal.2024; 497: 154410. CrossRef
Arginine deiminase pathway of Tetragenococcus halophilus contributes to improve the acid tolerance of lactic acid bacteria
Huan Yang, Dingkang Wang, Yao Jin, Rongqing Zhou, Jun Huang, Chongde Wu
Food Microbiology.2023; 113: 104281. CrossRef
Current advances for omics-guided process optimization of microbial manufacturing
Shengtong Wan, Xin Liu, Wentao Sun, Bo Lv, Chun Li
Bioresources and Bioprocessing.2023;[Epub] CrossRef
Proteomic perspectives on thermotolerant microbes: an updated review
Chandraprakash Yamini, Govindasamy Sharmila, Chandrasekaran Muthukumaran, Kumar Pavithran, Narasimhan Manojkumar
Molecular Biology Reports.2022; 49(1): 629. CrossRef
Comparative transcriptome analysis for the biosynthesis of antioxidant exopolysaccharide in Streptococcus thermophilusCS6
Yang Zhou, Yanhua Cui, Xiaojun Qu
Journal of the Science of Food and Agriculture.2022; 102(12): 5321. CrossRef
Genome-Scale Metabolic Modeling Combined with Transcriptome Profiling Provides Mechanistic Understanding of Streptococcus thermophilus CH8 Metabolism
Martin H. Rau, Paula Gaspar, Maiken Lund Jensen, Asger Geppel, Ana Rute Neves, Ahmad A. Zeidan, Danilo Ercolini
Applied and Environmental Microbiology.2022;[Epub] CrossRef
Foodomic-Based Approach for the Control and Quality Improvement of Dairy Products
Rubén Agregán, Noemí Echegaray, Asad Nawaz, Christophe Hano, Gholamreza Gohari, Mirian Pateiro, José M. Lorenzo
Metabolites.2021; 11(12): 818. CrossRef
Milk Fermentation by Lacticaseibacillus rhamnosus GG and Streptococcus thermophilus SY-102: Proteolytic Profile and ACE-Inhibitory Activity
Jessica Lizbeth Sebastián-Nicolas, Elizabeth Contreras-López, Juan Ramírez-Godínez, Alma Elizabeth Cruz-Guerrero, Gabriela Mariana Rodríguez-Serrano, Javier Añorve-Morga, Judith Jaimez-Ordaz, Araceli Castañeda-Ovando, Emmanuel Pérez-Escalante, Alexis Ayal
Fermentation.2021; 7(4): 215. CrossRef
Regulatory Mechanisms of L-Lactic Acid and Taste Substances in Chinese Acid Rice Soup (Rice-Acid) Fermented With a Lacticaseibacillus paracasei and Kluyveromyces marxianus
Na Liu, Likang Qin, Song Miao
Frontiers in Microbiology.2021;[Epub] CrossRef
Metabolic Pathway Profiling in Intracellular and Extracellular Environments of Streptococcus thermophilus During pH-Controlled Batch Fermentations
Yali Qiao, Gefei Liu, Xuepeng Lv, Xuejing Fan, Yanjiao Zhang, Li Meng, Mingzhi Ai, Zhen Feng
Frontiers in Microbiology.2020;[Epub] CrossRef

Transcriptome analysis to understand the effects of the toxoflavin and tropolone produced by phytopathogenic Burkholderia on Escherichia coli: Jungwook Park , Hyun-Hee Lee , Hyejung Jung , Young-Su Seo; J. Microbiol. 2019;57(9):781-794. Published online August 27, 2019; DOI: https://doi.org/10.1007/s12275-019-9330-1

49 View
0 Download
8 Web of Science
8 Crossref

Abstract

The phytopathogenic Burkholderia species B. glumae and B. plantarii are the causal agents of bacterial wilt, grain rot, and seedling blight, which threaten the rice industry globally. Toxoflavin and tropolone are produced by these phytopathogens and are considered the most hostile biohazards with a broad spectrum of target organisms. However, despite their nonspecific toxicity, the effects of toxoflavin and tropolone on bacteria remain unknown. RNA-seq based transcriptome analysis was employed to determine the genome-wide expression patterns under phytotoxin treatment. Expression of 2327 and 830 genes was differentially changed by toxoflavin and tropolone, respectively. Enriched biological pathways reflected the down-regulation of oxidative phosphorylation and ribosome function, beginning with the inhibition of membrane biosynthesis and nitrogen metabolism under oxidative stress or iron starvation. Conversely, several systems such as bacterial chemotaxis, flagellar assembly, biofilm formation, and sulfur/taurine transporters were highly expressed as countermeasures against the phytotoxins. In addition, our findings revealed that three hub genes commonly induced by both phytotoxins function as the siderophore enterobactin, an ironchelator. Our study provides new insights into the effects of phytotoxins on bacteria for better understanding of the interactions between phytopathogens and other microorganisms. These data will also be applied as a valuable source in subsequent applications against phytotoxins, the major virulence factor.

Citations

Citations to this article as recorded by

AHL-Based Quorum Sensing Regulates the Biosynthesis of a Variety of Bioactive Molecules in Bacteria
Mélanie Gonzales, Pauline Jacquet, Floriane Gaucher, Éric Chabrière, Laure Plener, David Daudé
Journal of Natural Products.2024; 87(4): 1268. CrossRef
Determination of bacterial toxin toxoflavin and fervenulin in food and identification of their degradation products
Hui Wang, Lili Hu, Xiaotu Chang, Yuge Hu, Yan Zhang, Peng Zhou, Xiaojiao Cui
Food Chemistry.2023; 399: 134010. CrossRef
Antimicrobial peptides in combination with citronellal efficiently kills multidrug resistance bacteria
Zhanyi Yang, Shiqi He, Yingxin Wei, Xuefeng Li, Anshan Shan, Jiajun Wang
Phytomedicine.2023; 120: 155070. CrossRef
A membrane protein of the rice pathogen Burkholderia glumae required for oxalic acid secretion and quorum sensing
Asif Iqbal, George Nwokocha, Vijay Tiwari, Inderjit K. Barphagha, Anne Grove, Jong Hyun Ham, William T. Doerrler
Molecular Plant Pathology.2023; 24(11): 1400. CrossRef
Characterisation of Pythium aristosporum Oomycete—A Novel Pathogen Causing Rice Seedling Blight in China
Jinxin Liu, Ruisi Zhang, Chuzhen Xu, Chunlai Liu, Yanyan Zheng, Xue Zhang, Shasha Liu, Yonggang Li
Journal of Fungi.2022; 8(9): 890. CrossRef
Toxoflavin secreted by Pseudomonas alcaliphila inhibits the growth of Legionella pneumophila and Vermamoeba vermiformis
Sebastien P. Faucher, Sara Matthews, Arvin Nickzad, Passoret Vounba, Deeksha Shetty, Émilie Bédard, Michele Prévost, Eric Déziel, Kiran Paranjape
Water Research.2022; 216: 118328. CrossRef
Chemical or Genetic Alteration of Proton Motive Force Results in Loss of Virulence of Burkholderia glumae, the Cause of Rice Bacterial Panicle Blight
Asif Iqbal, Pradip R. Panta, John Ontoy, Jobelle Bruno, Jong Hyun Ham, William T. Doerrler, Gladys Alexandre
Applied and Environmental Microbiology.2021;[Epub] CrossRef
Multiple endogenous seed-born bacteria recovered rice growth disruption caused by Burkholderia glumae
Chiharu Akimoto-Tomiyama
Scientific Reports.2021;[Epub] CrossRef

Mutants defective in the production of encapsulin show a tan-phaselocked phenotype in Myxococcus xanthus: Dohee Kim , Juo Choi , Sunjin Lee , Hyesook Hyun , Kyoung Lee , Kyungyun Cho; J. Microbiol. 2019;57(9):795-802. Published online June 11, 2019; DOI: https://doi.org/10.1007/s12275-019-8683-9

45 View
0 Download
13 Web of Science
10 Crossref

Abstract

Myxococcus xanthus, a myxobacterium, displays phase variation between yellow phase and tan phase. We found that deletion of the encA gene encoding encapsulin and the encF gene encoding a metalloprotease causes formation of tan colonies that never transform into yellow colonies. The encA and encF mutants were defective in the production of DKxanthene and myxovirescin. They did not produce extracellular polysaccharides; hence, the cells did not aggregate in liquid and showed reduced swarming on agar plates. The mutants had defective sporulation, but were rescued extracellularly by wild type cells. All these traits indicate that the encA and encF mutants are likely to be tan-phase-locked, and encapsulin has a close relationship with phase variation in M. xanthus. The encA and encF genes are localized in the same gene cluster, encBAEFG (MXAN_3557~MXAN_3553). Unlike the encA and encF genes, deletion of other genes in the cluster did not show tan-phase-locked phenotype.

Citations

Citations to this article as recorded by

Encapsulated Ferritin-like Proteins: A Structural Perspective
Elif Eren, Norman R. Watts, Felipe Montecinos, Paul T. Wingfield
Biomolecules.2024; 14(6): 624. CrossRef
A widespread bacterial protein compartment sequesters and stores elemental sulfur
Robert Benisch, Michael P. Andreas, Tobias W. Giessen
Science Advances.2024;[Epub] CrossRef
Structure and heterogeneity of a highly cargo-loaded encapsulin shell
Seokmu Kwon, Michael P. Andreas, Tobias W. Giessen
Journal of Structural Biology.2023; 215(4): 108022. CrossRef
Bacterial Nanocompartments: Structures, Functions, and Applications
Harry Benjamin McDowell, Egbert Hoiczyk, Michael Y. Galperin
Journal of Bacteriology.2022;[Epub] CrossRef
Condensation and Protection of DNA by the Myxococcus xanthus Encapsulin: A Novel Function
Ana V. Almeida, Ana J. Carvalho, Tomás Calmeiro, Nykola C. Jones, Søren V. Hoffmann, Elvira Fortunato, Alice S. Pereira, Pedro Tavares
International Journal of Molecular Sciences.2022; 23(14): 7829. CrossRef
Encapsulins
Tobias W. Giessen
Annual Review of Biochemistry.2022; 91(1): 353. CrossRef
Advances in encapsulin nanocompartment biology and engineering
Jesse A. Jones, Tobias W. Giessen
Biotechnology and Bioengineering.2021; 118(1): 491. CrossRef
Encapsulin nanocages: Protein encapsulation and iron sequestration
Ana V. Almeida, Ana J. Carvalho, Alice S. Pereira
Coordination Chemistry Reviews.2021; 448: 214188. CrossRef
Discovery and characterization of a novel family of prokaryotic nanocompartments involved in sulfur metabolism
Robert J Nichols, Benjamin LaFrance, Naiya R Phillips, Devon R Radford, Luke M Oltrogge, Luis E Valentin-Alvarado, Amanda J Bischoff, Eva Nogales, David F Savage
eLife.2021;[Epub] CrossRef
Nanotechnological Applications Based on Bacterial Encapsulins
Javier M. Rodríguez, Carolina Allende-Ballestero, Jeroen J. L. M. Cornelissen, José R. Castón
Nanomaterials.2021; 11(6): 1467. CrossRef

Middle East respiratory syndrome coronavirus-encoded ORF8b strongly antagonizes IFN-β promoter activation: its implication for vaccine design: Jeong Yoon Lee , Sojung Bae , Jinjong Myoung; J. Microbiol. 2019;57(9):803-811. Published online August 27, 2019; DOI: https://doi.org/10.1007/s12275-019-9272-7

48 View
0 Download
37 Web of Science
32 Crossref

Abstract

Middle East respiratory syndrome coronavirus (MERS-CoV) is a causative agent of severe-to-fatal pneumonia especially in patients with pre-existing conditions, such as smoking and chronic obstructive pulmonary disease (COPD). MERS-CoV transmission continues to be reported in the Saudi Arabian Peninsula since its discovery in 2012. However, it has rarely been epidemic outside the area except one large outbreak in South Korea in May 2015. The genome of the epidemic MERS-CoV isolated from a Korean patient revealed its homology to previously reported strains. MERS-CoV encodes 5 accessory proteins and generally, they do not participate in the genome transcription and replication but rather are involved in viral evasion of the host innate immune responses. Here we report that ORF8b, an accessory protein of MERSCoV, strongly inhibits both MDA5- and RIG-I-mediated activation of interferon beta promoter activity while downstream signaling molecules were left largely unaffected. Of note, MDA5 protein levels were significantly down-regulated by ORF8b and co-expression of ORF4a and ORF4b. These novel findings will facilitate elucidation of mechanisms of virus-encoded evasion strategies, thus helping design rationale antiviral countermeasures against deadly MERS-CoV infection.

Citations

Citations to this article as recorded by

MDA5 Is a Major Determinant of Developing Symptoms in Critically Ill COVID-19 Patients
Amit K. Maiti
Clinical Reviews in Allergy & Immunology.2024; 67(1-3): 58. CrossRef
An updated review on pathogenic coronaviruses (CoVs) amid the emergence of SARS-CoV-2 variants: A look into the repercussions and possible solutions
Ali A. Rabaan, Maha Fahad Alenazy, Ahmad A. Alshehri, Mohammed Abdulrahman Alshahrani, Maha F. Al-Subaie, Hayam A. Alrasheed, Nawal A. Al Kaabi, Nanamika Thakur, Nabiha A. Bouafia, Mohammed Alissa, Abdulrahman M. Alsulaiman, Abeer M. AlBaadani, Hatem M. A
Journal of Infection and Public Health.2023; 16(11): 1870. CrossRef
Contrasting roles of MERS-CoV and SARS-CoV-2 internal proteins in pathogenesis in mice
Lok-Yin Roy Wong, Abby Odle, Emma Luhmann, Douglas C. Wu, Yiquan Wang, Qi Wen Teo, Celeste Ptak, Alan Sariol, Shea Lowery, Matthias Mack, David K. Meyerholz, Nicholas C. Wu, Lilliana Radoshevich, Stanley Perlman, Diane E. Griffin, Dong-Yan Jin
mBio.2023;[Epub] CrossRef
Genes, inflammatory response, tolerance, and resistance to virus infections in migratory birds, bats, and rodents
Patrick Douglas Corrêa Pereira, Daniel Guerreiro Diniz, Emanuel Ramos da Costa, Nara Gyzely de Morais Magalhães, Anderson de Jesus Falcão da Silva, Jéssica Gizele Sousa Leite, Natan Ibraim Pires Almeida, Kelle de Nazaré Cunha, Mauro André Damasceno de Mel
Frontiers in Immunology.2023;[Epub] CrossRef
NLP-Based Subject with Emotions Joint Analytics for Epidemic Articles
Woo Hyun Park, Isma Farah Siddiqui, Dong Ryeol Shin, Nawab Muhammad Faseeh Qureshi
Computers, Materials & Continua.2022; 73(2): 2985. CrossRef
Nanoparticle and virus-like particle vaccine approaches against SARS-CoV-2
Chulwoo Kim, Jae-Deog Kim, Sang-Uk Seo
Journal of Microbiology.2022; 60(3): 335. CrossRef
The Interplay Between Coronavirus and Type I IFN Response
Wenxiang Xue, Chan Ding, Kun Qian, Ying Liao
Frontiers in Microbiology.2022;[Epub] CrossRef
Nature of viruses and pandemics: Coronaviruses
Luis Enjuanes, Isabel Sola, Sonia Zúñiga, José M. Honrubia, Melissa Bello-Pérez, Alejandro Sanz-Bravo, Ezequiel González-Miranda, Jesús Hurtado-Tamayo, Ricardo Requena-Platek, Li Wang, Diego Muñoz-Santos, Carlos M. Sánchez, Ana Esteban, Jorge Ripoll-Gómez
Current Research in Immunology.2022; 3: 151. CrossRef
The N-Terminal Region of Middle East Respiratory Syndrome Coronavirus Accessory Protein 8b Is Essential for Enhanced Virulence of an Attenuated Murine Coronavirus
Yuming Li, Yingkang Jin, Lijun Kuang, Zhenhua Luo, Fang Li, Jing Sun, Airu Zhu, Zhen Zhuang, Yanqun Wang, Liyan Wen, Donglan Liu, Chunke Chen, Mian Gan, Jingxian Zhao, Jincun Zhao, Tom Gallagher
Journal of Virology.2022;[Epub] CrossRef
Middle East respiratory syndrome coronavirus ORF4b protein inhibits TLR7‐ and TLR9‐dependent alpha interferon induction
Yoshinori Kitagawa, Takumi Tsukamoto, Masae Itoh, Bin Gotoh
FEBS Letters.2022; 596(19): 2538. CrossRef
Escape and Over-Activation of Innate Immune Responses by SARS-CoV-2: Two Faces of a Coin
Sameer-ul-Salam Mattoo, Seong-Jun Kim, Dae-Gyun Ahn, Jinjong Myoung
Viruses.2022; 14(3): 530. CrossRef
Middle East respiratory syndrome coronavirus vaccine based on a propagation-defective RNA replicon elicited sterilizing immunity in mice
J. Gutiérrez-Álvarez, J. M. Honrubia, A. Sanz-Bravo, E. González-Miranda, R. Fernández-Delgado, M. T. Rejas, S. Zúñiga, I. Sola, L. Enjuanes
Proceedings of the National Academy of Sciences.2021;[Epub] CrossRef
The roles of signaling pathways in SARS-CoV-2 infection; lessons learned from SARS-CoV and MERS-CoV
Nima Hemmat, Zahra Asadzadeh, Noora Karim Ahangar, Hajar Alemohammad, Basira Najafzadeh, Afshin Derakhshani, Amir Baghbanzadeh, Hossein Bannazadeh Baghi, Darya Javadrashid, Souzan Najafi, Meriadeg Ar Gouilh, Behzad Baradaran
Archives of Virology.2021; 166(3): 675. CrossRef
Interspecies Jumping of Bat Coronaviruses
Antonio C. P. Wong, Susanna K. P. Lau, Patrick C. Y. Woo
Viruses.2021; 13(11): 2188. CrossRef
Chikungunya and Zika Viruses: Co-Circulation and the Interplay between Viral Proteins and Host Factors
Sineewanlaya Wichit, Nuttamonpat Gumpangseth, Rodolphe Hamel, Sakda Yainoy, Siwaret Arikit, Chuchard Punsawad, Dorothée Missé
Pathogens.2021; 10(4): 448. CrossRef
Genetically Engineered Live-Attenuated Middle East Respiratory Syndrome Coronavirus Viruses Confer Full Protection against Lethal Infection
Javier Gutiérrez-Álvarez, José M. Honrubia, Raúl Fernández-Delgado, Li Wang, Carlos Castaño-Rodríguez, Sonia Zúñiga, Isabel Sola, Luis Enjuanes, Mark R. Dennison
mBio.2021;[Epub] CrossRef
Coordinated Roadmap to Grip Pandemic COVID-19
Rohini S. Kharwade, Sachin M. More
Coronaviruses.2021; 2(4): 468. CrossRef
A Promising Vaccination Strategy against COVID-19 on the Horizon: Heterologous Immunization
Sameer-ul-Salam Mattoo, Jinjong Myoung
Journal of Microbiology and Biotechnology.2021; 31(12): 1601. CrossRef
The ORF8 protein of SARS-CoV-2 induced endoplasmic reticulum stress and mediated immune evasion by antagonizing production of interferon beta
Farooq Rashid, Emmanuel Enoch Dzakah, Haiying Wang, Shixing Tang
Virus Research.2021; 296: 198350. CrossRef
Development of A MERS-CoV Replicon Cell Line for Antiviral Screening
Jing Chen, Bing-Jie Hu, Kai Zhao, Yun Luo, Hao-Feng Lin, Zheng-Li Shi
Virologica Sinica.2021; 36(4): 730. CrossRef
A Testimony of the Surgent SARS-CoV-2 in the Immunological Panorama of the Human Host
Rinki Minakshi, Arif Tasleem Jan, Safikur Rahman, Jihoe Kim
Frontiers in Cellular and Infection Microbiology.2020;[Epub] CrossRef
Immunologic aspects of characteristics, diagnosis, and treatment of coronavirus disease 2019 (COVID-19)
Feng-Yee Chang, Hsiang-Cheng Chen, Pei-Jer Chen, Mei-Shang Ho, Shie-Liang Hsieh, Jung-Chung Lin, Fu-Tong Liu, Huey-Kang Sytwu
Journal of Biomedical Science.2020;[Epub] CrossRef
Middle East Respiratory Syndrome Coronavirus ORF8b Accessory Protein Suppresses Type I IFN Expression by Impeding HSP70-Dependent Activation of IRF3 Kinase IKKε
Lok-Yin Roy Wong, Zi-Wei Ye, Pak-Yin Lui, Xuyang Zheng, Shuofeng Yuan, Lin Zhu, Sin-Yee Fung, Kit-San Yuen, Kam-Leung Siu, Man-Lung Yeung, Zongwei Cai, Patrick Chiu-Yat Woo, Kwok-Yung Yuen, Chi-Ping Chan, Dong-Yan Jin
The Journal of Immunology.2020; 205(6): 1564. CrossRef
PEDV ORF3 Independently Regulates IκB Kinase β-Mediated NF-κB and IFN-β Promoter Activities
Challika Kaewborisuth, Surapong Koonpaew, Kanjana Srisutthisamphan, Ratchanont Viriyakitkosol, Peera Jaru-ampornpan, Anan Jongkaewwattana
Pathogens.2020; 9(5): 376. CrossRef
Zika Virus-Encoded NS2A and NS4A Strongly Downregulate NF-κB Promoter Activity
Jeong Yoon Lee, Thi Thuy Ngan Nguyen, Jinjong Myoung
Journal of Microbiology and Biotechnology.2020; 30(11): 1651. CrossRef
Chikungunya Virus nsP2 Impairs MDA5/RIG-I-Mediated Induction of NF-κB Promoter Activation: A Potential Target for Virus-Specific Therapeutics
Sojung Bae, Jeong Yoon Lee, Jinjong Myoung
Journal of Microbiology and Biotechnology.2020; 30(12): 1801. CrossRef
Interferon Beta-1b and Lopinavir–Ritonavir for Middle East Respiratory Syndrome
Yaseen M. Arabi, Ayed Y. Asiri, Abdullah M. Assiri, Hanan H. Balkhy, Ali Al Bshabshe, Majed Al Jeraisy, Yasser Mandourah, Mohamed H.A. Azzam, Abdulhadi M. Bin Eshaq, Sameera Al Johani, Shmeylan Al Harbi, Hani A.A. Jokhdar, Ahmad M. Deeb, Ziad A. Memish, J
New England Journal of Medicine.2020; 383(17): 1645. CrossRef
An overview of Middle East respiratory syndrome coronavirus vaccines in preclinical studies
Naru Zhang, Jian Shang, Chaoqun Li, Kehui Zhou, Lanying Du
Expert Review of Vaccines.2020; 19(9): 817. CrossRef
Progress and Challenges in the Development of COVID-19 Vaccines and Current Understanding of SARS-CoV-2- Specific Immune Responses
Kyun-Do Kim, Insu Hwang, Keun Bon Ku, Sumin Lee, Seong-Jun Kim, Chonsaeng Kim
Journal of Microbiology and Biotechnology.2020; 30(8): 1109. CrossRef
The African-American population with a low allele frequency of SNP rs1990760 (T allele) in IFIH1 predicts less IFN-beta expression and potential vulnerability to COVID-19 infection
Amit K. Maiti
Immunogenetics.2020; 72(6-7): 387. CrossRef
Nonstructural proteins NS7b and NS8 are likely to be phylogenetically associated with evolution of 2019-nCoV
Muhamad Fahmi, Yukihiko Kubota, Masahiro Ito
Infection, Genetics and Evolution.2020; 81: 104272. CrossRef
Methyltransferase of a cell culture-adapted hepatitis E inhibits the MDA5 receptor signaling pathway
Jinjong Myoung, Jeong Yoon Lee, Kang Sang Min
Journal of Microbiology.2019; 57(12): 1126. CrossRef

A newly characterized exopolysaccharide from Sanghuangporus sanghuang: Xiao-kui Ma , Xu She , Eric Charles Peterson , Yu Zhen Wang , Peng Zheng , Hongyan Ma , Kexin Zhang , Jian Liang; J. Microbiol. 2019;57(9):812-820. Published online June 14, 2019; DOI: https://doi.org/10.1007/s12275-019-9036-4

66 View
0 Download
27 Web of Science
27 Crossref

Abstract

Sanghuangporus sanghuang is a well-known pharmacodynamic and economically important edible fungus associated with mulberry (Morus spp.). A distinctly new exopolysaccharide (EPS), designated SHP-2 was obtained from S. sanghuang P0988 broth, and its structure and anti-aging prosperity were characterized. SHP-2 was found to be composed of a backbone of 􎵔4)-β-Manp-(1􎵔4)-α-Araf-(1􎵔3,4)-α-Glcp(1􎵔􀁇 3,4)-α-Glcp-(1􎵔3,4)-α-Glcp-(1􎵔3,4)-α-Glcp-(1􎵔3,4)-α- Glcp-(1􎵔6)-α-Galp-(1􎵔4)-β-Manp-(1􎵔􀁇and five branches, including four α-D-Glcp-(1􎵔􀁇and one α-D-Manp-(1􎵔􀁇 SHP-2 was shown to increase antioxidant enzyme activities including catalase (CAT) and superoxide dismutase (SOD) activities, as well as trolox equivalent antioxidant (TEAC) capacity in serum of mice pre-treated with D-Gal, while reducing lipofuscin levels. SHP-2 exerted a favorable influence on immune organ coefficients and ameliorated the histopathological hepatic lesions and apoptosis in hepatocytes of Dgalactose- aged mice almost in a dose-dependent manner. Using the same analytical methods, on comparison with previously studied EPS compounds (i.e. SHP-1), SHP-2 was found to have more complex structure, larger molecule weight, and different anti-aging properties. The results presented here suggest that not only does EPS bioactivity vary with respect to molecular structures and molecule weight, but that multiple structures with different activity can be expressed by a single fungal strain. These results may help understanding the antiaging prosperity of these polysaccharides for use in health foods or dietary supplements.

Citations

Citations to this article as recorded by

Bacterial exopolysaccharides: Characteristics and antioxidant mechanism
Junqi Dong, Zhenxing Chi, Siqi Lu, Xiaoqin Xie, Pixian Gong, Huijing Li, Wei Liu
International Journal of Biological Macromolecules.2025; 289: 138849. CrossRef
Anticancer and anti-angiogenic activities of mannooligosaccharides extracted from coconut meal on colorectal carcinoma cells in vitro
Patthra Pason, Chakrit Tachaapaikoon, Waralee Suyama, Rattiya Waeonukul, Rong Shao, Molin Wongwattanakul, Temduang Limpaiboon, Chirapond Chonanant, Nipaporn Ngernyuang
Toxicology Reports.2024; 12: 82. CrossRef
Low molecular weight polysaccharide of Tremella fuciformis exhibits stronger antioxidant and immunomodulatory activities than high molecular weight polysaccharide
Quancen Lee, Zhixiang Xue, Yijuan Luo, Yanpeng Lin, Meiying Lai, Huanyi Xu, Bin Liu, Mingfeng Zheng, Feng Lv, Feng Zeng
International Journal of Biological Macromolecules.2024; 281: 136097. CrossRef
Optimization of Fermentation Culture Medium for Sanghuangporus alpinus Using Response-Surface Methodology
Yuhan Gao, Xiaomin Li, Hui Xu, Huijuan Sun, Junli Zhang, Xiaoping Wu, Junsheng Fu
Horticulturae.2024; 10(5): 474. CrossRef
Structural characterization and anti-fatigue mechanism based on the gut-muscle axis of a polysaccharide from Zingiber officinale
Yongshuai Jing, Mingsong Li, Yingqi Li, Teng Ma, Ying Qu, Beibei Hu, Yinghua Xie, Zhiwei Li
International Journal of Biological Macromolecules.2024; 283: 137621. CrossRef
Structural Characterization, and Antioxidant, Hypoglycemic and Immunomodulatory Activity of Exopolysaccharide from Sanghuangporus sanghuang JM-1
Yanglan Luo, Naixin Cao, Liling Huang, Lanlan Tang, Xuzhou Liu, Wenlong Zhang, Shilv Huang, Xiuchao Xie, Yong Yan
Molecules.2024; 29(19): 4564. CrossRef
Research Progress of Bioactive Components in Sanghuangporus spp.
Jungu Lu, Manman Su, Xuan Zhou, Deming Li, Xinhui Niu, Yi Wang
Molecules.2024; 29(6): 1195. CrossRef
Polysaccharides from Phellinus linteus: A systematic review of their extractions, purifications, structures and functions
Dandan Qin, Shuai Han, Menglin Liu, Tianyi Guo, Zuomin Hu, Yaping Zhou, Feijun Luo
International Journal of Biological Macromolecules.2023; 230: 123163. CrossRef
The mechanism of polysaccharide synthesis of Sanghuangporus sanghuang based on multi-omic analyses and feedback inhibition
Tingting Li, Qin Wang, Yan Yang, Dingka Song
Carbohydrate Polymers.2023; 321: 121288. CrossRef
Antioxidant activity and semi-solid emulsification of a polysaccharide from coffee cherry peel
Tianjun Zhang, Dongjie Huang, Xianyu Liu, Fabin Chen, Yiyan Liu, Yang Jiang, Dapeng Li
International Journal of Biological Macromolecules.2023; 244: 125207. CrossRef
Rhizoctonia solani AG1 IA extracellular polysaccharides: Structural characterization and induced resistance to rice sheath blight
Yudie Lin, Hui Gu, Xiaochen Jia, Wenxia Wang, Bo Hong, Fuyun Zhang, Heng Yin
International Journal of Biological Macromolecules.2023; 244: 125281. CrossRef
Extraction, structure and bioactivities of polysaccharides from Sanghuangporus spp.: A review
Genglan Lin, Yanying Li, Xiaohua Chen, Fuming Zhang, Robert J. Linhardt, Anqiang Zhang
Food Bioscience.2023; 53: 102587. CrossRef
Structural characterization and immunoregulatory activity of a neutral polysaccharide from the roots of Apocynum venetum L.
Dan Liu, Shu-Yue Wang, Guan-Nan Wang, Li-Hua Zheng, Ying Sun, Lei Liu, Yong-Li Bao
International Journal of Biological Macromolecules.2022; 222: 90. CrossRef
In Silico Discovery of Anticancer Peptides from Sanghuang
Minghao Liu, Jiachen Lv, Liyuan Chen, Wannan Li, Weiwei Han
International Journal of Molecular Sciences.2022; 23(22): 13682. CrossRef
Extraction, purification and structural characterization of polysaccharides from Apocynum venetum L. roots with anti-inflammatory activity
Dan Liu, Shu-Yue Wang, Yong-Li Bao, Li-Hua Zheng, Guan-Nan Wang, Ying Sun, Xiao-Guang Yang, Lei Liu
Process Biochemistry.2022; 121: 100. CrossRef
Effects of Sparassis latifolia neutral polysaccharide on immune activity via TLR4-mediated MyD88-dependent and independent signaling pathways in RAW264.7 macrophages
Zening Qiao, Yue Zhao, Menghao Wang, Jinling Cao, Mingchang Chang, Shaojun Yun, Yanfen Cheng, Feier Cheng, Cuiping Feng
Frontiers in Nutrition.2022;[Epub] CrossRef
Recent advances in the bioactive polysaccharides and other key components from Phellinus spp. and their pharmacological effects: A review
Henan Zhang, Fuchun Jiang, Longqing Li, Xiaozhen Liu, Jing-Kun Yan
International Journal of Biological Macromolecules.2022; 222: 3108. CrossRef
Anti-Diabetic Effects of Ethanol Extract from Sanghuangporous vaninii in High-Fat/Sucrose Diet and Streptozotocin-Induced Diabetic Mice by Modulating Gut Microbiota
Zi-Rui Huang, Li-Yuan Zhao, Fu-Rong Zhu, Yun Liu, Jian-Yong Xiao, Zhi-Chao Chen, Xu-Cong Lv, Ying Huang, Bin Liu
Foods.2022; 11(7): 974. CrossRef
Current advances and potential trends of the polysaccharides derived from medicinal mushrooms sanghuang
Hao Wang, Jin-Xin Ma, Miao Zhou, Jing Si, Bao-Kai Cui
Frontiers in Microbiology.2022;[Epub] CrossRef
Optimization of culture medium for Sanghuangporus vaninii and a study on its therapeutic effects on gout
Qiong Guo, Liying Zhao, Yuhua Zhu, Jiang Wu, Cuiting Hao, Shuang Song, Wei Shi
Biomedicine & Pharmacotherapy.2021; 135: 111194. CrossRef
Systematic analysis of the lysine malonylome in Sanghuangporus sanghuang
Tong Wang, Guangyuan Wang, Guoli Zhang, Ranran Hou, Liwei Zhou, Xuemei Tian
BMC Genomics.2021;[Epub] CrossRef
The phytochemistry and pharmacology of medicinal fungi of the genusPhellinus: a review
Pingya He, Yi Zhang, Ning Li
Food & Function.2021; 12(5): 1856. CrossRef
Comprehensive evaluation of alkali-extracted polysaccharides from Agrocybe cylindracea: Comparison on structural characterization
Yu-Xiao Wang, Ting Zhang, Yue Xin, Xiao-Jun Huang, Jun-Yi Yin, Shao-Ping Nie
Carbohydrate Polymers.2021; 255: 117502. CrossRef
Chemical characterization of two fractions from Sanghuangporus sanghuang and evaluation of antidiabetic activity
Ranran Hou, Linjiang Zhou, Yan Fu, Tong Wang, Zhe Li, Liwei Zhou, Guoli Zhang, Xuemei Tian
Journal of Functional Foods.2021; 87: 104825. CrossRef
Isolation and structural characterization of a non-competitive α-glucosidase inhibitory polysaccharide from the seeds of Litchi chinensis Sonn
Jianjun Wu, Yongbin Xu, Xinya Liu, Miaomiao Chen, Bo Zhu, Huijun Wang, Songshan Shi, Luping Qin, Shunchun Wang
International Journal of Biological Macromolecules.2020; 154: 1105. CrossRef
The Structural Characteristics and Biological Activities of Intracellular Polysaccharide Derived from Mutagenic Sanghuangporous sanghuang Strain
Tingting Li, Linjun Chen, Di Wu, Guochao Dong, Wanchao Chen, Henan Zhang, Yan Yang, Wenhui Wu
Molecules.2020; 25(16): 3693. CrossRef
Purification and characterization of a novel antioxidant Phelligridin LA produced by Inonotus baumii
Tianwen Wang, Hui Li, Chen Liang, Shiwei Sun, Ao Liu, Hu Zhu
Journal of Chemical Technology & Biotechnology.2020; 95(9): 2483. CrossRef

IgG and IgM responses to human papillomavirus L1 virus-like particle as a function of dosing schedule and vaccine formulation: Min-Hye Park , Ji Won You , Hyoung Jin Kim , Hong-Jin Kim; J. Microbiol. 2019;57(9):821-827. Published online August 27, 2019; DOI: https://doi.org/10.1007/s12275-019-9308-z

50 View
0 Download
4 Web of Science
4 Crossref

Abstract

Most commercialized virus-like particle (VLP) vaccines use aluminum salt as adjuvant, even though VLPs provoke adequate antibody responses without adjuvant. We do not have detailed knowledge of how adjuvant affects the profile of anti- VLP antibodies. Meanwhile, there is evidence that differences between vaccination protocols influence the glycosylation of antibodies, which may alter their effector functions. In the present study a murine model was used to investigate the effects of dosing schedule and adjuvant on the antibody profiles and glycosylation levels of antigen-specific antibody responses to human papillomavirus type 16 L1 (HPV16 L1) VLPs. Mice received subcutaneously 2,000 ng of antigen divided into 4 or 7 doses. The HPV16 L1 VLPs elicited > 4 log10 anti-HPV16 L1 IgG titers without adjuvant, and aluminum hydroxide as adjuvant increased IgG titers 1.3- to 4-fold and reduced the anti-HPV16 L1 IgG2a / anti-HPV16 L1 IgG1 ratio value (use of aluminum hydroxide reduced the ratio of the IgG2a). Immunization with HPV16 L1 VLPs in combination with Freund’s adjuvant enhanced IgG titers 5- to 12- fold. Seven-dose immunization markedly increased anti- HPV16 L1 IgM titers compared to four-dose immunization, as well as increasing the proportion of glycosylated antibodies. Our results suggest that antibody glycosylation can be controlled immunologically, and IgG and IgM profiles and glycosylation profiles of the vaccine-induced antibodies can be used as indicators reflecting the vaccine characteristics. These
results
indicate that the HPV16 L1 VLP dosing schedule can affect the quality of antigen-specific antibody responses. We suggest that dosing schedules should be noted in vaccination protocols for VLP-based vaccines.

Citations

Citations to this article as recorded by

Human papillomavirus vaccines: organisation and experience of preclinical studies
A. S. Korovkin, T. N. Nikitina, T. Yu. Kozlova, D. V. Gorenkov, A. R. Volgin
Biological Products. Prevention, Diagnosis, Treatment.2024; 24(3): 243. CrossRef
Chimeric Hepatitis B core virus-like particles harboring SARS-CoV2 epitope elicit a humoral immune response in mice
Sima Sazegari, Malihe Akbarzadeh Niaki, Alireza Afsharifar, Ali Niazi, Abdollah Derakhshandeh, Maryam Moradi Vahdat, Farshad Hemmati, Mohammad Hadi Eskandari
Microbial Cell Factories.2023;[Epub] CrossRef
Anti-JMH alloantibody in inherited JMH-negative patients leads to immunogenic destruction of JMH-positive RBCs
Zhaohu Yuan, Yaming Wei, Xiaojie Chen, Shufei He, Kui Cai, Minglu Zhong, Huiying Huang, Xinxin Tong, Zhen Liu, Xuexin Yang
Clinical and Experimental Immunology.2021; 205(2): 182. CrossRef
Prevalence of antibodies against a cyclic peptide mimicking the FG loop of the human papillomavirus type 16 capsid among Tunisian women
Elham Hassen, Devendra Bansal, Randa Ghdira, Anouar Chaieb, Hedi Khairi, Abdelfattah Zakhama, Sami Remadi, Johan Hoebeke, Ali A. Sultan, Lotfi Chouchane
Journal of Translational Medicine.2020;[Epub] CrossRef

First
Prev
Page of 1
Next
Last

Previous issues