Review
- Recent Advances of Nipah Virus Disease: Pathobiology to Treatment and Vaccine Advancement
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Sagnik Saha, Manojit Bhattacharya, Sang-Soo Lee, Chiranjib Chakraborty
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J. Microbiol. 2024;62(10):811-828. Published online September 18, 2024
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DOI: https://doi.org/10.1007/s12275-024-00168-3
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Abstract
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The zoonotic infection of the Nipah virus (NiV) has yet again appeared in 2023 in Kerala state, India. The virus, which has a mortality rate ranging from about 40 to 70%, has already infected India five times, the first being in 2001. The current infection is the sixth virus outbreak in the Indian population. In 1998, the first NiV infection was noted in one village in Malaysia. After that, outbreaks from other South and Southeast Asian countries have been reported periodically. It can spread between humans through contact with body fluids.
Therefore, it is unlikely to generate a new pandemic. However, there is a considerable knowledge gap in the different areas of NiV. To date, no approved vaccines or treatments have been available. To fulfil the knowledge gap, the review article provided a detailed overview of the genome and genome-encoded proteins, epidemiology, transmission, pathobiology, immunobiology, diagnosis, prevention and control measures, therapeutics (monoclonal antibodies and drug molecules), and vaccine advancement of the emerging and deadly pathogen. The advanced information will help researchers to develop safe and effective NiV vaccine and treatment regimens worldwide.
Journal Articles
- Crystal structure of the nuclease and capping domain of SbcD from Staphylococcus aureus
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Jinwook Lee , Inseong Jo , Jinsook Ahn , Seokho Hong , Soyeon Jeong , Aeran Kwon , Nam-Chul Ha
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J. Microbiol. 2021;59(6):584-589. Published online April 20, 2021
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DOI: https://doi.org/10.1007/s12275-021-1012-0
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Abstract
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The SbcCD complex is an essential component of the DNA
double-strand break (DSB) repair system in bacteria. The
bacterial SbcCD complex recognizes and cleaves the DNA
ends in DSBs by ATP-dependent endo- and exonuclease
activities as an early step of the DNA repair process. SbcD
consists of nuclease, capping, and helix-loop-helix domains.
Here, we present the crystal structure of a SbcD fragment from
Staphylococcus aureus, which contained nuclease and capping
domains, at a resolution of 2.9 Å. This structure shows
a dimeric assembly similar to that of the corresponding domains
of SbcD from Escherichia coli. The S. aureus SbcD fragment
exhibited endonuclease activities on supercoiled DNA
and exonuclease activity on linear and nicked DNA. This
study contributes to the understanding of the molecular basis
for how bacteria can resist sterilizing treatment, causing DNA
damage.
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Citations
Citations to this article as recorded by

- Staphylococcus aureus SOS response: Activation, impact, and drug targets
Kaiying Cheng, Yukang Sun, Huan Yu, Yingxuan Hu, Yini He, Yuanyuan Shen
mLife.2024; 3(3): 343. CrossRef
- Patterns and drivers of Vibrio isolates phylogenetic diversity in the Beibu Gulf, China
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Xing Chen , Hong Du , Si Chen , Xiaoli Li , Huaxian Zhao , Qiangsheng Xu , Jinli Tang , Gonglingxia Jiang , Shuqi Zou , Ke Dong , Jonathan M. Adams , Nan Li , Chengjian Jiang
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J. Microbiol. 2020;58(12):998-1009. Published online October 23, 2020
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DOI: https://doi.org/10.1007/s12275-020-0293-z
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51
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4
Web of Science
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3
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Abstract
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Members of the genus Vibrio are ubiquitous in aquatic environments
and can be found either in a culturable or a viable
but nonculturable (VBNC) state. Despite widespread concerns
as to how to define the occurrence and dynamics of
Vibrio populations by culture-independent approaches, further
physiological research and relevant biotechnological
developments will require the isolation and cultivation of the
microbes from various environments. The present work provides
data and perspectives on our understanding of culturable
Vibrio community structure and diversity in the Beibu
Gulf. Finally, we isolated 1,037 strains of Vibrio from 45 samples
and identified 18 different species. Vibrio alginolyticus,
V. cyclitrophicus, V. tasmaniensis, V. brasiliensis, and V. splendidus
were the dominant species that had regional distribution
characteristics. The correlation between the quantitative
distribution and community structure of culturable Vibrio and
environmental factors varied with the Vibrio species and geographical
locations. Among them, salinity, nitrogen, and phosphorus
were the main factors affecting the diversity of culturable
Vibrio. These results help to fill a knowledge gap on
Vibrio diversity and provide data for predicting and controlling
pathogenic Vibrio outbreaks in the Beibu Gulf.
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Citations
Citations to this article as recorded by

- Environmental factors that regulate Vibrio spp. abundance and community structure in tropical waters
Yi You Wong, Choon Weng Lee, Chui Wei Bong, Joon Hai Lim, Ching Ching Ng, Kumaran Narayanan, Edmund Ui Hang Sim, Ai-jun Wang
Anthropocene Coasts.2024;[Epub] CrossRef - Co-occurrence of chromophytic phytoplankton and the Vibrio community during Phaeocystis globosa blooms in the Beibu Gulf
Qiangsheng Xu, Pengbin Wang, Jinghua Huangleng, Huiqi Su, Panyan Chen, Xing Chen, Huaxian Zhao, Zhenjun Kang, Jinli Tang, Gonglingxia Jiang, Zhuoting Li, Shuqi Zou, Ke Dong, Yuqing Huang, Nan Li
Science of The Total Environment.2022; 805: 150303. CrossRef - Virulence mechanisms of vibrios belonging to the Splendidus clade as aquaculture pathogens, from case studies and genome data
Weiwei Zhang, Chenghua Li
Reviews in Aquaculture.2021; 13(4): 2004. CrossRef
Reviews
- MINIREVIEW] EAST1 toxin: An enigmatic molecule associated with sporadic episodes of diarrhea in humans and animals
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J. Daniel Dubreuil
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J. Microbiol. 2019;57(7):541-549. Published online June 27, 2019
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DOI: https://doi.org/10.1007/s12275-019-8651-4
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50
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21
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19
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Abstract
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EAST1 is produced by a subset of enteroaggregative Escherichia
coli strains. This toxin is a 38-amino acid peptide of 4100
Da. It shares 50% homology with the enterotoxic domain of
STa and interacts with the same receptor. The mechanism
of action of EAST1is proposed to be identical to that of STa
eliciting a cGMP increase. EAST1 is associated with diarrheal
disease in Man and various animal species including cattle
and swine. Nevertheless, as EAST1-positive strains as well as
culture supernatants did not provoke unequivocally diarrhea
either in animal models or in human volunteers, the role of
this toxin in disease is today still debated. This review intent
is to examine the role of EAST1 toxin in diarrheal illnesses.
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Citations
Citations to this article as recorded by

- Virulence and Antimicrobial Resistance Profiles of Shiga Toxin-Producing Escherichia coli from River Water and Farm Animal Feces near an Agricultural Region in Northwestern Mexico
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Microbiology Research.2024; 15(1): 385. CrossRef - Survey in ruminants from Rwanda revealed high diversity and prevalence of extended-spectrum cephalosporin-resistant Enterobacterales
Emmanuel Irimaso, Helga Keinprecht, Michael P. Szostak, Adriana Cabal Rosel, Beatrix Stessl, Amelie Desvars-Larrive, Christophe Ntakirutimana, Otto W. Fischer, Thomas Wittek, Elke Müller, Andrea T. Feßler, Sascha D. Braun, Stefan Schwarz, Stefan Monecke,
BMC Veterinary Research.2024;[Epub] CrossRef - The genetic potential of toxigenic Escherichia coli isolated from calves and piglets
Aleksandr Tischenko, Andrey Koschaev, Aleksandr Valerievich Milovanov, Anastasiya Vasil'evna Elisyutikova, Vladimir Ivanovich Terehov, Tat'yana Vyacheslavovna Malysheva
Agrarian Bulletin of the.2024; 24(08): 1071. CrossRef - Characterisation of ESBL/AmpC-Producing Enterobacteriaceae isolated from poultry farms in Peninsular Malaysia
Hui-Shee Tan, Pan Yan, Hollysia Alda Agustie, Hwei-San Loh, Nabin Rayamajhi, Chee-Mun Fang
Letters in Applied Microbiology.2023;[Epub] CrossRef - Genomic traits of multidrug resistant enterotoxigenic Escherichia coli isolates from diarrheic pigs
Jiameng Hu, Junlin Li, Xiaobo Huang, Jing Xia, Min Cui, Yong Huang, Yiping Wen, Yue Xie, Qin Zhao, Sanjie Cao, Likou Zou, Xinfeng Han
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Zhikai Zhang, Xuejiang Wang, Feng Li
Frontiers in Microbiology.2023;[Epub] CrossRef - Characteristics, Whole-Genome Sequencing and Pathogenicity Analysis of Escherichia coli from a White Feather Broiler Farm
Shaopeng Wu, Lulu Cui, Yu Han, Fang Lin, Jiaqi Huang, Mengze Song, Zouran Lan, Shuhong Sun
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Lamya Zohair Yamani, Nasreldin Elhadi
Infection and Drug Resistance.2022; Volume 15: 6763. CrossRef - Genomic Analysis of a Highly Virulent NDM-1-Producing Escherichia coli ST162 Infecting a Pygmy Sperm Whale (Kogia breviceps) in South America
Fábio P. Sellera, Brenda Cardoso, Danny Fuentes-Castillo, Fernanda Esposito, Elder Sano, Herrison Fontana, Bruna Fuga, Daphne W. Goldberg, Lourdes A. V. Seabra, Marzia Antonelli, Sandro Sandri, Cristiane K. M. Kolesnikovas, Nilton Lincopan
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Qian Liu, Xiangning Bai, Xi Yang, Guoyin Fan, Kui Wu, Wentao Song, Hui Sun, Shengen Chen, Haiying Chen, Yanwen Xiong
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Rana El-baz, Heba Shehta Said, Eman Salama Abdelmegeed, Rasha Barwa
Applied Microbiology and Biotechnology.2022; 106(3): 1279. CrossRef - Prevalence and Characterization of Quinolone-Resistance Determinants in Escherichia coli Isolated from Food-Producing Animals and Animal-Derived Food in the Philippines
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Antibiotics.2021; 10(4): 413. CrossRef - Potential Zoonotic Pathovars of Diarrheagenic Escherichia coli Detected in Lambs for Human Consumption from Tierra del Fuego, Argentina
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Microorganisms.2021; 9(8): 1710. CrossRef - Post-weaning diarrhea in pigs weaned without medicinal zinc: risk factors, pathogen dynamics, and association to growth rate
Esben Østergaard Eriksen, Egle Kudirkiene, Anja Ejlersgård Christensen, Marianne Viuf Agerlin, Nicolai Rosager Weber, Ane Nødtvedt, Jens Peter Nielsen, Katrine Top Hartmann, Lotte Skade, Lars Erik Larsen, Karen Pankoke, John Elmerdahl Olsen, Henrik Elvang
Porcine Health Management.2021;[Epub] CrossRef - Pig vaccination strategies based on enterotoxigenic Escherichia coli toxins
J. Daniel Dubreuil
Brazilian Journal of Microbiology.2021; 52(4): 2499. CrossRef - Characterization of E. coli Isolates Producing Extended Spectrum Beta-Lactamase SHV-Variants from the Food Chain in Germany
Alexandra Irrgang, Ge Zhao, Katharina Juraschek, Annemarie Kaesbohrer, Jens A. Hammerl
Microorganisms.2021; 9(9): 1926. CrossRef - Genomic data reveal international lineages of critical priority Escherichia coli harbouring wide resistome in Andean condors (Vultur gryphus Linnaeus, 1758)
Danny Fuentes‐Castillo, Fernanda Esposito, Brenda Cardoso, Gislaine Dalazen, Quézia Moura, Bruna Fuga, Herrison Fontana, Louise Cerdeira, Milena Dropa, Jürgen Rottmann, Daniel González‐Acuña, José L. Catão‐Dias, Nilton Lincopan
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- REVIEW] H5 influenza, a global update
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Rhodri Harfoot , Richard J. Webby
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J. Microbiol. 2017;55(3):196-203. Published online February 28, 2017
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DOI: https://doi.org/10.1007/s12275-017-7062-7
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53
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Abstract
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H5 influenza viruses have caused much alarm globally due
to their high pathogenic potential. As yet we have not seen
sustained spread of the virus amongst humans despite a high
prevalence of the virus in avian populations. Nevertheless,
isolated human cases of infection have demonstrated high
mortality and there are substantial efforts being taken to
monitor the evolution of the virus and to undertake preparedness
activities. Here we review and discuss the evolution of
the A/goose/Guangdong/1/96 (H5N1) virus with emphasis
on recent events.
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Kanta Subbarao
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Research Support, Non-U.S. Gov't
- Molecular Characterization Reveals Involvement of Altered El Tor Biotype Vibrio cholerae O1 Strains in Cholera Outbreak at Hyderabad, India
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Ajay Kumar Goel , Meenu Jain , Pramod Kumar , Pennagaram Sarguna , Meera Bai , Neha Ghosh , Natrajan Gopalan
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J. Microbiol. 2011;49(2):280-284. Published online May 3, 2011
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DOI: https://doi.org/10.1007/s12275-011-0317-9
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Abstract
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Thirty-four Vibrio cholerae isolates collected from a cholera outbreak in Hyderabad, South India were found to belong to serogroup O1 biotype El Tor serotype Ogawa. The genotype of all the isolates was confirmed by PCR assays. All the isolates were found PCR positive for ctxAB, ompW, rfbO1, rtxC, and tcpA genes. All the isolates but one harboured rstREl Tor allele. However, one isolate carried both rstREl Tor as well as rstRClassical alleles. Cholera toxin (ctxB) genotyping of the isolates confirmed the presence of altered cholera toxin B of classical biotype in all the isolates. All the isolates except VCH35 harboured an RS1-CTX prophage array on the large chromosome. The isolate VCH35 contained a tandem repeat of classical CTX prophage on the small chromosome. The clonal relationship among the V. cholerae isolates as carried out by enterobacterial repetitive intergenic consensus sequences PCR, BOX PCR and randomly amplified polymorphic DNA, uniformly showed a genetic relationship among the outbreak isolates. The results of this study suggest that altered El Tor biotype V. cholerae with the classical cholera toxin gene are involved in cholera outbreaks in India.