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Review
Recent Advances of Nipah Virus Disease: Pathobiology to Treatment and Vaccine Advancement
Sagnik Saha, Manojit Bhattacharya, Sang-Soo Lee, Chiranjib Chakraborty
J. Microbiol. 2024;62(10):811-828.   Published online September 18, 2024
DOI: https://doi.org/10.1007/s12275-024-00168-3
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AbstractAbstract
The zoonotic infection of the Nipah virus (NiV) has yet again appeared in 2023 in Kerala state, India. The virus, which has a mortality rate ranging from about 40 to 70%, has already infected India five times, the first being in 2001. The current infection is the sixth virus outbreak in the Indian population. In 1998, the first NiV infection was noted in one village in Malaysia. After that, outbreaks from other South and Southeast Asian countries have been reported periodically. It can spread between humans through contact with body fluids. Therefore, it is unlikely to generate a new pandemic. However, there is a considerable knowledge gap in the different areas of NiV. To date, no approved vaccines or treatments have been available. To fulfil the knowledge gap, the review article provided a detailed overview of the genome and genome-encoded proteins, epidemiology, transmission, pathobiology, immunobiology, diagnosis, prevention and control measures, therapeutics (monoclonal antibodies and drug molecules), and vaccine advancement of the emerging and deadly pathogen. The advanced information will help researchers to develop safe and effective NiV vaccine and treatment regimens worldwide.
Journal Articles
Crystal structure of the nuclease and capping domain of SbcD from Staphylococcus aureus
Jinwook Lee , Inseong Jo , Jinsook Ahn , Seokho Hong , Soyeon Jeong , Aeran Kwon , Nam-Chul Ha
J. Microbiol. 2021;59(6):584-589.   Published online April 20, 2021
DOI: https://doi.org/10.1007/s12275-021-1012-0
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AbstractAbstract
The SbcCD complex is an essential component of the DNA double-strand break (DSB) repair system in bacteria. The bacterial SbcCD complex recognizes and cleaves the DNA ends in DSBs by ATP-dependent endo- and exonuclease activities as an early step of the DNA repair process. SbcD consists of nuclease, capping, and helix-loop-helix domains. Here, we present the crystal structure of a SbcD fragment from Staphylococcus aureus, which contained nuclease and capping domains, at a resolution of 2.9 Å. This structure shows a dimeric assembly similar to that of the corresponding domains of SbcD from Escherichia coli. The S. aureus SbcD fragment exhibited endonuclease activities on supercoiled DNA and exonuclease activity on linear and nicked DNA. This study contributes to the understanding of the molecular basis for how bacteria can resist sterilizing treatment, causing DNA damage.

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  • Staphylococcus aureus SOS response: Activation, impact, and drug targets
    Kaiying Cheng, Yukang Sun, Huan Yu, Yingxuan Hu, Yini He, Yuanyuan Shen
    mLife.2024; 3(3): 343.     CrossRef
Patterns and drivers of Vibrio isolates phylogenetic diversity in the Beibu Gulf, China
Xing Chen , Hong Du , Si Chen , Xiaoli Li , Huaxian Zhao , Qiangsheng Xu , Jinli Tang , Gonglingxia Jiang , Shuqi Zou , Ke Dong , Jonathan M. Adams , Nan Li , Chengjian Jiang
J. Microbiol. 2020;58(12):998-1009.   Published online October 23, 2020
DOI: https://doi.org/10.1007/s12275-020-0293-z
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AbstractAbstract
Members of the genus Vibrio are ubiquitous in aquatic environments and can be found either in a culturable or a viable but nonculturable (VBNC) state. Despite widespread concerns as to how to define the occurrence and dynamics of Vibrio populations by culture-independent approaches, further physiological research and relevant biotechnological developments will require the isolation and cultivation of the microbes from various environments. The present work provides data and perspectives on our understanding of culturable Vibrio community structure and diversity in the Beibu Gulf. Finally, we isolated 1,037 strains of Vibrio from 45 samples and identified 18 different species. Vibrio alginolyticus, V. cyclitrophicus, V. tasmaniensis, V. brasiliensis, and V. splendidus were the dominant species that had regional distribution characteristics. The correlation between the quantitative distribution and community structure of culturable Vibrio and environmental factors varied with the Vibrio species and geographical locations. Among them, salinity, nitrogen, and phosphorus were the main factors affecting the diversity of culturable Vibrio. These results help to fill a knowledge gap on Vibrio diversity and provide data for predicting and controlling pathogenic Vibrio outbreaks in the Beibu Gulf.

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  • Environmental factors that regulate Vibrio spp. abundance and community structure in tropical waters
    Yi You Wong, Choon Weng Lee, Chui Wei Bong, Joon Hai Lim, Ching Ching Ng, Kumaran Narayanan, Edmund Ui Hang Sim, Ai-jun Wang
    Anthropocene Coasts.2024;[Epub]     CrossRef
  • Co-occurrence of chromophytic phytoplankton and the Vibrio community during Phaeocystis globosa blooms in the Beibu Gulf
    Qiangsheng Xu, Pengbin Wang, Jinghua Huangleng, Huiqi Su, Panyan Chen, Xing Chen, Huaxian Zhao, Zhenjun Kang, Jinli Tang, Gonglingxia Jiang, Zhuoting Li, Shuqi Zou, Ke Dong, Yuqing Huang, Nan Li
    Science of The Total Environment.2022; 805: 150303.     CrossRef
  • Virulence mechanisms of vibrios belonging to the Splendidus clade as aquaculture pathogens, from case studies and genome data
    Weiwei Zhang, Chenghua Li
    Reviews in Aquaculture.2021; 13(4): 2004.     CrossRef
Reviews
MINIREVIEW] EAST1 toxin: An enigmatic molecule associated with sporadic episodes of diarrhea in humans and animals
J. Daniel Dubreuil
J. Microbiol. 2019;57(7):541-549.   Published online June 27, 2019
DOI: https://doi.org/10.1007/s12275-019-8651-4
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AbstractAbstract
EAST1 is produced by a subset of enteroaggregative Escherichia coli strains. This toxin is a 38-amino acid peptide of 4100 Da. It shares 50% homology with the enterotoxic domain of STa and interacts with the same receptor. The mechanism of action of EAST1is proposed to be identical to that of STa eliciting a cGMP increase. EAST1 is associated with diarrheal disease in Man and various animal species including cattle and swine. Nevertheless, as EAST1-positive strains as well as culture supernatants did not provoke unequivocally diarrhea either in animal models or in human volunteers, the role of this toxin in disease is today still debated. This review intent is to examine the role of EAST1 toxin in diarrheal illnesses.

Citations

Citations to this article as recorded by  
  • Virulence and Antimicrobial Resistance Profiles of Shiga Toxin-Producing Escherichia coli from River Water and Farm Animal Feces near an Agricultural Region in Northwestern Mexico
    Bianca A. Amézquita-López, Marcela Soto-Beltrán, Bertram G. Lee, Edgar F. Bon-Haro, Ofelia Y. Lugo-Melchor, Beatriz Quiñones
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  • Survey in ruminants from Rwanda revealed high diversity and prevalence of extended-spectrum cephalosporin-resistant Enterobacterales
    Emmanuel Irimaso, Helga Keinprecht, Michael P. Szostak, Adriana Cabal Rosel, Beatrix Stessl, Amelie Desvars-Larrive, Christophe Ntakirutimana, Otto W. Fischer, Thomas Wittek, Elke Müller, Andrea T. Feßler, Sascha D. Braun, Stefan Schwarz, Stefan Monecke,
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  • The genetic potential of toxigenic Escherichia coli isolated from calves and piglets
    Aleksandr Tischenko, Andrey Koschaev, Aleksandr Valerievich Milovanov, Anastasiya Vasil'evna Elisyutikova, Vladimir Ivanovich Terehov, Tat'yana Vyacheslavovna Malysheva
    Agrarian Bulletin of the.2024; 24(08): 1071.     CrossRef
  • Characterisation of ESBL/AmpC-Producing Enterobacteriaceae isolated from poultry farms in Peninsular Malaysia
    Hui-Shee Tan, Pan Yan, Hollysia Alda Agustie, Hwei-San Loh, Nabin Rayamajhi, Chee-Mun Fang
    Letters in Applied Microbiology.2023;[Epub]     CrossRef
  • Genomic traits of multidrug resistant enterotoxigenic Escherichia coli isolates from diarrheic pigs
    Jiameng Hu, Junlin Li, Xiaobo Huang, Jing Xia, Min Cui, Yong Huang, Yiping Wen, Yue Xie, Qin Zhao, Sanjie Cao, Likou Zou, Xinfeng Han
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • An exploration of alginate oligosaccharides modulating intestinal inflammatory networks via gut microbiota
    Zhikai Zhang, Xuejiang Wang, Feng Li
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Characteristics, Whole-Genome Sequencing and Pathogenicity Analysis of Escherichia coli from a White Feather Broiler Farm
    Shaopeng Wu, Lulu Cui, Yu Han, Fang Lin, Jiaqi Huang, Mengze Song, Zouran Lan, Shuhong Sun
    Microorganisms.2023; 11(12): 2939.     CrossRef
  • Genome-Based Assessment of Antimicrobial Resistance and Virulence Potential of Isolates of Non-Pullorum/Gallinarum Salmonella Serovars Recovered from Dead Poultry in China
    Yan Li, Xiamei Kang, Abdelaziz Ed-Dra, Xiao Zhou, Chenghao Jia, Anja Müller, Yuqing Liu, Corinna Kehrenberg, Min Yue, Sandeep Tamber
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Virulence Characteristics, Antibiotic Resistance Patterns and Molecular Typing of Enteropathogenic Producing Escherichia coli (EPEC) Isolates in Eastern Province of Saudi Arabia: 2013–2014
    Lamya Zohair Yamani, Nasreldin Elhadi
    Infection and Drug Resistance.2022; Volume 15: 6763.     CrossRef
  • Genomic Analysis of a Highly Virulent NDM-1-Producing Escherichia coli ST162 Infecting a Pygmy Sperm Whale (Kogia breviceps) in South America
    Fábio P. Sellera, Brenda Cardoso, Danny Fuentes-Castillo, Fernanda Esposito, Elder Sano, Herrison Fontana, Bruna Fuga, Daphne W. Goldberg, Lourdes A. V. Seabra, Marzia Antonelli, Sandro Sandri, Cristiane K. M. Kolesnikovas, Nilton Lincopan
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Identification and Genomic Characterization of Escherichia albertii in Migratory Birds from Poyang Lake, China
    Qian Liu, Xiangning Bai, Xi Yang, Guoyin Fan, Kui Wu, Wentao Song, Hui Sun, Shengen Chen, Haiying Chen, Yanwen Xiong
    Pathogens.2022; 12(1): 9.     CrossRef
  • Prevalence of virulence genes among Escherichia coli strains isolated from food and carcass swabs of different animal origins in Croatia
    Dora Stojević, Andrea Humski, Marina Mikulić, Vesna Dobranić, Irena Reil, Sanja Duvnjak, Miroslav Benić, Relja Beck, Željko Cvetnić
    Journal of Veterinary Research.2022; 66(3): 395.     CrossRef
  • Characterization of virulence determinants and phylogenetic background of multiple and extensively drug resistant Escherichia coli isolated from different clinical sources in Egypt
    Rana El-baz, Heba Shehta Said, Eman Salama Abdelmegeed, Rasha Barwa
    Applied Microbiology and Biotechnology.2022; 106(3): 1279.     CrossRef
  • Prevalence and Characterization of Quinolone-Resistance Determinants in Escherichia coli Isolated from Food-Producing Animals and Animal-Derived Food in the Philippines
    Lawrence Belotindos, Marvin Villanueva, Joel Miguel, Precious Bwalya, Tetsuya Harada, Ryuji Kawahara, Chie Nakajima, Claro Mingala, Yasuhiko Suzuki
    Antibiotics.2021; 10(4): 413.     CrossRef
  • Potential Zoonotic Pathovars of Diarrheagenic Escherichia coli Detected in Lambs for Human Consumption from Tierra del Fuego, Argentina
    Ximena Blanco Crivelli, María Paz Bonino, Mariana Soledad Sanin, Juan Facundo Petrina, Vilma Noelia Disalvo, Rosana Massa, Elizabeth Miliwebsky, Armando Navarro, Isabel Chinen, Adriana Bentancor
    Microorganisms.2021; 9(8): 1710.     CrossRef
  • Post-weaning diarrhea in pigs weaned without medicinal zinc: risk factors, pathogen dynamics, and association to growth rate
    Esben Østergaard Eriksen, Egle Kudirkiene, Anja Ejlersgård Christensen, Marianne Viuf Agerlin, Nicolai Rosager Weber, Ane Nødtvedt, Jens Peter Nielsen, Katrine Top Hartmann, Lotte Skade, Lars Erik Larsen, Karen Pankoke, John Elmerdahl Olsen, Henrik Elvang
    Porcine Health Management.2021;[Epub]     CrossRef
  • Pig vaccination strategies based on enterotoxigenic Escherichia coli toxins
    J. Daniel Dubreuil
    Brazilian Journal of Microbiology.2021; 52(4): 2499.     CrossRef
  • Characterization of E. coli Isolates Producing Extended Spectrum Beta-Lactamase SHV-Variants from the Food Chain in Germany
    Alexandra Irrgang, Ge Zhao, Katharina Juraschek, Annemarie Kaesbohrer, Jens A. Hammerl
    Microorganisms.2021; 9(9): 1926.     CrossRef
  • Genomic data reveal international lineages of critical priority Escherichia coli harbouring wide resistome in Andean condors (Vultur gryphus Linnaeus, 1758)
    Danny Fuentes‐Castillo, Fernanda Esposito, Brenda Cardoso, Gislaine Dalazen, Quézia Moura, Bruna Fuga, Herrison Fontana, Louise Cerdeira, Milena Dropa, Jürgen Rottmann, Daniel González‐Acuña, José L. Catão‐Dias, Nilton Lincopan
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REVIEW] H5 influenza, a global update
Rhodri Harfoot , Richard J. Webby
J. Microbiol. 2017;55(3):196-203.   Published online February 28, 2017
DOI: https://doi.org/10.1007/s12275-017-7062-7
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AbstractAbstract
H5 influenza viruses have caused much alarm globally due to their high pathogenic potential. As yet we have not seen sustained spread of the virus amongst humans despite a high prevalence of the virus in avian populations. Nevertheless, isolated human cases of infection have demonstrated high mortality and there are substantial efforts being taken to monitor the evolution of the virus and to undertake preparedness activities. Here we review and discuss the evolution of the A/goose/Guangdong/1/96 (H5N1) virus with emphasis on recent events.

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    Ivette A. Nuñez, Ted M. Ross
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    Su He Wang, Douglas Smith, Zhengyi Cao, Jesse Chen, Hugo Acosta, Jessica A. Chichester, Vidadi Yusibov, Stephen J. Streatfield, Ali Fattom, James R. Baker
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  • The safety and immunogenicity of a cell-derived adjuvanted H5N1 vaccine – A phase I randomized clinical trial
    Aristine Cheng, Szu-Min Hsieh, Sung-Ching Pan, Yu-Han Li, Erh-Fang Hsieh, Hsiang-Chi Lee, Ting-Wan Lin, Kuan-Lang Lai, Charles Chen, Stanley Shi-Chung Chang, Shan-Chwen Chang
    Journal of Microbiology, Immunology and Infection.2019; 52(5): 685.     CrossRef
  • Sequential Immunization with Universal Live Attenuated Influenza Vaccine Candidates Protects Ferrets against a High-Dose Heterologous Virus Challenge
    Irina Isakova-Sivak, Victoria Matyushenko, Tatiana Kotomina, Irina Kiseleva, Elena Krutikova, Svetlana Donina, Andrey Rekstin, Natalia Larionova, Daria Mezhenskaya, Konstantin Sivak, Arman Muzhikyan, Anastasia Katelnikova, Larisa Rudenko
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  • Sensitivity of Commercially Available Influenza Rapid Diagnostic Tests in the 2018–2019 Influenza Season
    Yuko Sakai-Tagawa, Seiya Yamayoshi, Yoshihiro Kawaoka
    Frontiers in Microbiology.2019;[Epub]     CrossRef
  • Adaptive Evolution of Human-Isolated H5Nx Avian Influenza A Viruses
    Fucheng Guo, Yiliang Li, Shu Yu, Lu Liu, Tingting Luo, Zhiqing Pu, Dan Xiang, Xuejuan Shen, David M. Irwin, Ming Liao, Yongyi Shen
    Frontiers in Microbiology.2019;[Epub]     CrossRef
  • DDX5 RNA Helicases: Emerging Roles in Viral Infection
    Wenyu Cheng, Guohua Chen, Huaijie Jia, Xiaobing He, Zhizhong Jing
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Research Support, Non-U.S. Gov't
Molecular Characterization Reveals Involvement of Altered El Tor Biotype Vibrio cholerae O1 Strains in Cholera Outbreak at Hyderabad, India
Ajay Kumar Goel , Meenu Jain , Pramod Kumar , Pennagaram Sarguna , Meera Bai , Neha Ghosh , Natrajan Gopalan
J. Microbiol. 2011;49(2):280-284.   Published online May 3, 2011
DOI: https://doi.org/10.1007/s12275-011-0317-9
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AbstractAbstract
Thirty-four Vibrio cholerae isolates collected from a cholera outbreak in Hyderabad, South India were found to belong to serogroup O1 biotype El Tor serotype Ogawa. The genotype of all the isolates was confirmed by PCR assays. All the isolates were found PCR positive for ctxAB, ompW, rfbO1, rtxC, and tcpA genes. All the isolates but one harboured rstREl Tor allele. However, one isolate carried both rstREl Tor as well as rstRClassical alleles. Cholera toxin (ctxB) genotyping of the isolates confirmed the presence of altered cholera toxin B of classical biotype in all the isolates. All the isolates except VCH35 harboured an RS1-CTX prophage array on the large chromosome. The isolate VCH35 contained a tandem repeat of classical CTX prophage on the small chromosome. The clonal relationship among the V. cholerae isolates as carried out by enterobacterial repetitive intergenic consensus sequences PCR, BOX PCR and randomly amplified polymorphic DNA, uniformly showed a genetic relationship among the outbreak isolates. The results of this study suggest that altered El Tor biotype V. cholerae with the classical cholera toxin gene are involved in cholera outbreaks in India.

Journal of Microbiology : Journal of Microbiology
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