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Research Support, Non-U.S. Gov't
Illumina-based analysis of bacterial diversity related to halophytes Salicornia europaea and Sueada aralocaspica
Ying-wu Shi , Kai Lou , Chun Li , Lei Wang , Zhen-yong Zhao , Shuai Zhao , Chang-yan Tian
J. Microbiol. 2015;53(10):678-685.   Published online October 2, 2015
DOI: https://doi.org/10.1007/s12275-015-5080-x
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AbstractAbstract
We used Illumina-based 16S rRNA V3 amplicon pyrosequencing to investigate the community structure of soil bacteria from the rhizosphere surrounding Salicornia europaea, and endophytic bacteria living in Salicornia europaea plants and Sueada aralocaspica seeds growing at the Fukang Desert Ecosystem Observation and Experimental Station (FDEOES) in Xinjiang Province, China, using an Illumina genome analyzer. A total of 89.23 M effective sequences of the 16S rRNA gene V3 region were obtained from the two halophyte species. These sequences revealed a number of operational taxonomic units (OTUs) in the halophytes. There were between 22–2,206 OTUs in the halophyte plant sample, at the 3% cutoff level, and a sequencing depth of 30,000 sequences. We identified 25 different phyla, 39 classes and 141 genera from the resulting 134,435 sequences. The most dominant phylum in all the samples was Proteobacteria (41.61%–99.26%; average, 43.30%). The other large phyla were Firmicutes (0%– 7.19%; average, 1.15%), Bacteroidetes (0%–1.64%; average, 0.44%) and Actinobacteria (0%–0.46%; average, 0.24%). This
result
suggested that the diversity of bacteria is abundant in the rhizosphere soil, while the diversity of bacteria was poor within Salicornia europaea plant samples. To the extent of our knowledge, this study is the first to characterize and compare the endophytic bacteria found within different halophytic plant species roots using PCR-based Illumina pyrosequencing
method
.

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    PeerJ.2022; 10: e12807.     CrossRef
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    Journal of Microbiology and Biotechnology.2021; 31(9): 1231.     CrossRef
  • The Root Microbiome of Salicornia ramosissima as a Seedbank for Plant-Growth Promoting Halotolerant Bacteria
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    Applied Sciences.2021; 11(5): 2233.     CrossRef
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    Science of The Total Environment.2021; 798: 149118.     CrossRef
  • Rhizosphere bacteria community and functions under typical natural halophyte communities in North China salinized areas
    Fating Yin, Fenghua Zhang, Haoran Wang, Jian Liu
    PLOS ONE.2021; 16(11): e0259515.     CrossRef
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    Applied Soil Ecology.2020; 151: 103532.     CrossRef
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    Chun-Juan Dong, Qian Li, Ling-Ling Wang, Qing-Mao Shang, Kandasamy Ulaganathan
    PLOS ONE.2020; 15(4): e0232446.     CrossRef
  • Mining the roots of various species of the halophyte Suaeda for halotolerant nitrogen-fixing endophytic bacteria with the potential for promoting plant growth
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    Eurasian Soil Science.2020; 53(1): 90.     CrossRef
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    Annals of Applied Biology.2019; 174(3): 319.     CrossRef
  • Salicornia europaea L. as an underutilized saline-tolerant plant inhabited by endophytic diazotrophs
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  • Bacterial Diversity Associated With the Rhizosphere and Endosphere of Two Halophytes: Glaux maritima and Salicornia europaea
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    Environmental Science and Pollution Research.2018; 25(25): 25420.     CrossRef
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