Journal of Microbiology

Journal Articles

Influence of dragon bamboo with different planting patterns on microbial community and physicochemical property of soil on sunny and shady slopes: Weiyi Liu , Fang Wang , Yanmei Sun , Lei Yang , Huihai Chen , Weijie Liu , Bin Zhu , Chaomao Hui , Shiwei Wang; J. Microbiol. 2020;58(11):906-914. Published online October 30, 2020; DOI: https://doi.org/10.1007/s12275-020-0082-8

58 View
0 Download
10 Web of Science
10 Crossref

Dragon bamboo (Dendrocalamus giganteus) is a giant sympodial bamboo species widely distributed in Asia. However, it remains unclear how dragon bamboo and soil microbes interact to affect soil properties. In this study, we investigated the planting patterns (semi-natural and artificial) on different slopes (sunny and shady) to determine the effects on soil properties and microbial community. The results showed that the soil in which dragon bamboo was grown was acidic, with a pH value of ~5. Also, the soil organic matter content, nitrogen hydrolysate concentration, total nitrogen, available potassium, and total potassium of the dragon bamboo seminatural forest significantly improved, especially on the sunny slope. In contrast, the available phosphorus level was higher in the artificial bamboo forest, probably owing to the phosphate fertilizer application. The bacterial and fungal diversity and the bacterial abundance were all higher on the sunny slope of the semi-natural forest than those in the other samples. The microbial operational taxonomic units (OTUs) shared between the shady and sunny slopes accounted for 47.8–62.2%, but the core OTUs of all samples were only 24.4– 30.4% of each sample, suggesting that the slope type had a significant effect on the microbial community. Some acidophilic microbes, such as Acidobacteria groups, Streptomyces and Mortierella, became dominant in dragon bamboo forest soil. A PICRUSt analysis of the bacterial functional groups revealed that post-translational modification, cell division, and coenzyme transport and metabolism were abundant in the semi-natural forest. However, some microorganisms with strong stress resistance might be activated in the artificial forest. Taken together, these results illustrated the influence of dragon bamboo growth on soil physicochemical property and microbial community, which might help understand the growth status of dragon bamboo under different planting patterns.

Citations

Citations to this article as recorded by

Characteristic Analysis of the Soil Bacterial Community Structure of Dendrocalamus brandisii from Seven Geographical Provenances in Yunnan Province
Qian Chen, Manyun Zhang, Negar Omidvar, Zhihong Xu, Shahla Hosseini Bai, Chaomao Hui, Weiyi Liu
Agronomy.2024; 14(9): 2010. CrossRef
Unveiling the impacts moso bamboo invasion on litter and soil properties: A meta-analysis
Weixue Luo, Qingyu Zhang, Peng Wang, Jie Luo, Chunyan She, Xuman Guo, Jiajia Yuan, Yuhong Sun, Ruming Guo, Zongfeng Li, Jinchun Liu, Jianping Tao
Science of The Total Environment.2024; 909: 168532. CrossRef
Transport, pollution, and health risk of heavy metals in “soil-medicinal and edible plant-human” system: A case study of farmland around the Beiya mining area in Yunnan, China
Jiayi Hu, Xiaofang Yang, Huajian Chi, Xin Liu, Ning Lu, Ya Liu, Shengchun Yang, Xiaodong Wen
Microchemical Journal.2024; 207: 111958. CrossRef
Microbial control of soil DOM transformation during the vegetation restoration in the Loess Plateau
Wenxin Chen, Qianqian Gao, Huaying Hu, Tingwei Shao, Chuifan Zhou
Plant and Soil.2024; 504(1-2): 385. CrossRef
Soil Bacterial Community Response to Fire Varies with Slope Aspect at Zhenshan Mountain, East China
Ping Zhu, Wenyan Liu, Zhongyuan Sun, Xinfu Bai, Jianqiang Song, Nan Wu, Yuping Hou
Eurasian Soil Science.2023; 56(5): 599. CrossRef
Structural characteristics and diversity of the rhizosphere bacterial communities of wild Fritillaria przewalskii Maxim. in the northeastern Tibetan Plateau
Zhijia Cui, Ran Li, Fan Li, Ling Jin, Haixu Wu, Chunya Cheng, Yi Ma, Zhenheng Wang, Yuanyuan Wang
Frontiers in Microbiology.2023;[Epub] CrossRef
Effects of different planting durations of Dendrocalamus brandisii on the soil bacterial community
Shuhong Zhu, Xiuting Zhao, Chaomao Hui, Zhongfu Zhang, Ruli Zhang, Weihan Su, Weiyi Liu
Journal of Soils and Sediments.2023; 23(11): 3891. CrossRef
Correlates of Rhizosphere Soil Properties, Fungal Community Composition, and Active Secondary Metabolites in Cornus officinalis in Different Regions of China
Haoqiang Sun, Binkai Han, Xiaolin Yang, Changfen He, Ke Zhao, Ting Wang, Shujing An, Xiaochang Xue, Jiefang Kang
Journal of Soil Science and Plant Nutrition.2023; 23(1): 514. CrossRef
Microbial inoculants and garbage fermentation liquid reduced root-knot nematode disease and As uptake in Panax quinquefolium cultivation by modulating rhizosphere microbiota community
Pei Cao, Xuemin Wei, Gang Wang, Xiaochen Chen, Jianping Han, Yuan Li
Chinese Herbal Medicines.2022; 14(1): 58. CrossRef
Heterotrophic Bacteria Play an Important Role in Endemism of Cephalostachyum pingbianense (Hsueh & Y.M. Yang ex Yi et al.) D.Z. Li & H.Q. Yang, 2007, a Full-Year Shooting Woody Bamboo
Tize Xia, Lushuang Li, Bin Li, Peitong Dou, Hanqi Yang
Forests.2022; 13(1): 121. CrossRef

Assembly mechanisms of soil bacterial communities in subalpine coniferous forests on the Loess Plateau, China: Pengyu Zhao , Jinxian Liu , Tong Jia , Zhengming Luo , Cui Li , Baofeng Chai; J. Microbiol. 2019;57(6):461-469. Published online May 27, 2019; DOI: https://doi.org/10.1007/s12275-019-8373-7

53 View
0 Download
7 Web of Science
6 Crossref

Abstract

Microbial community assembly is affected by trade-offs between deterministic and stochastic processes. However, the mechanisms underlying the relative influences of the two processes remain elusive. This knowledge gap limits our ability to understand the effects of community assembly processes on microbial community structures and functions. To better understand community assembly mechanisms, the community dynamics of bacterial ecological groups were investigated based on niche breadths in 23 soil plots from subalpine coniferous forests on the Loess Plateau in Shanxi, China. Here, the overall community was divided into the ecological groups that corresponded to habitat generalists, ‘other taxa’ and specialists. Redundancy analysis based on Bray-Curtis distances (db-RDA) and multiple regression tree (MRT) analysis indicated that soil organic carbon (SOC) was a general descriptor that encompassed the environmental gradients by which the communities responded to, because it can explain more significant variations in community diversity patterns. The three ecological groups exhibited different niche optima and degrees of specialization (i.e., niche breadths) along the SOC gradient, suggesting the presence of a gradient in tolerance for environmental heterogeneity. The inferred community assembly processes varied along the SOC gradient, wherein a transition was observed from homogenizing dispersal to variable selection that reflects increasing deterministic processes. Moreover, the ecological groups were inferred to perform different community functions that varied with community composition, structure. In conclusion, these results contribute to our understanding of the trade-offs between community assembly mechanisms and the responses of community structure and function to environmental gradients.

Citations

Citations to this article as recorded by

Stochastic Processes Dominate the Assembly of Soil Bacterial Communities of Land Use Patterns in Lesser Khingan Mountains, Northeast China
Junnan Ding, Shaopeng Yu
Life.2024; 14(11): 1407. CrossRef
Diversity, composition, metabolic characteristics, and assembly process of the microbial community in sewer system at the early stage
Yiming Yuan, Guangyi Zhang, Hongyuan Fang, Haifeng Guo, Yongkang Li, Zezhuang Li, Siwei Peng, Fuming Wang
Environmental Science and Pollution Research.2024; 31(9): 13075. CrossRef
Community assembly of bacterial generalists and specialists and their network characteristics in different altitudinal soils on Fanjing Mountain in Southwest China
Zhenming Zhang, Xianliang Wu, Jiachun Zhang, Yingying Liu, Wenmin Luo, Guiting Mou
CATENA.2024; 238: 107863. CrossRef
Ammonia-oxidizing archaea adapted better to the dark, alkaline oligotrophic karst cave than their bacterial counterparts
Qing Li, Xiaoyu Cheng, Xiaoyan Liu, Pengfei Gao, Hongmei Wang, Chuntian Su, Qibo Huang
Frontiers in Microbiology.2024;[Epub] CrossRef
Full-length 16S rRNA gene sequencing reveals the operating mode and chlorination-aggravated SWRO biofouling at a nuclear power plant
Kaijia Ren, Hongxia Ming, Siyu Liu, Xianlong Lang, Yuan Jin, Jingfeng Fan
Water Science & Technology.2024; 90(1): 1. CrossRef
Kalidium cuspidatum colonization changes the structure and function of salt crust microbial communities
Yaqing Pan, Peng Kang, Yaqi Zhang, Xinrong Li
Environmental Science and Pollution Research.2024; 31(13): 19764. CrossRef

Antimicrobial effect and proposed action mechanism of cordycepin against Escherichia coli and Bacillus subtilis: Qi Jiang , Zaixiang Lou , Hongxin Wang , Chen Chen; J. Microbiol. 2019;57(4):288-297. Published online March 30, 2019; DOI: https://doi.org/10.1007/s12275-019-8113-z

54 View
0 Download
39 Web of Science
39 Crossref

Abstract

The detailed antibacterial mechanism of cordycepin efficacy against food-borne germs remains ambiguous. In this study, the antibacterial activity and action mechanism of cordycepin were assessed. The results showed that cordycepin effectively inhibited the growth of seven bacterial pathogens including both Gram-positive and Gram-negative bacterial pathogens; the minimum inhibitory concentrations (MIC) were 2.5 and 1.25 mg/ml against Escherichia coli and Bacillus subtilis, respectively. Scanning electron microscope and transmission electron microscope examination confirmed that cordycepin caused obvious damages in the cytoplasmatic membranes of both E. coli and B. subtilis. Outer membrane permeability assessment indicated the loss of barrier function and the leakage of cytoplasmic contents. Propidium iodide and carboxyfluorescein diacetate double staining approach coupled with flow cytometry analysis indicated that the integrity of cell membrane was severely damaged during a short time, while the intracellular enzyme system still remained active. This clearly suggested that membrane damage was one of the reasons for cordycepin efficacy against bacteria. Additionally, results from circular dichroism and fluorescence analysis indicated cordycepin could insert to genome DNA base and double strand, which disordered the structure of genomic DNA. Basis on these results, the mode of bactericidal action of cordycepin against E. coli and B. subtilis was found to be a dual mechanism, disrupting bacterial cell membranes and binding to bacterial genomic DNA to interfere in cellular functions, ultimately leading to cell death.

Citations

Citations to this article as recorded by

Prospects for cordycepin biosynthesis in microbial cell factories
Xiang Li, Rongshuai Jiang, Shenghou Wang, Chenyang Li, Yongping Xu, Shuying Li, Qian Li, Liang Wang
Frontiers in Chemical Engineering.2024;[Epub] CrossRef
Dopamine-grafted oxidized hyaluronic acid/gelatin/cordycepin nanofiber membranes modulate the TLR4/NF-kB signaling pathway to promote diabetic wound healing
Ning Wang, Bo Hong, Yingchun Zhao, Chuanbo Ding, Guodong Chai, Yue Wang, Jiali Yang, Lifeng Zhang, Weimin Yu, Yang Lu, Shuang Ma, Shuai Zhang, Xinglong Liu
International Journal of Biological Macromolecules.2024; 262: 130079. CrossRef
Research Progress in Understanding the Molecular Biology of Cordyceps militaris
Lihong Wang, Ganghua Li, Xueqin Tian, Yitong Shang, Huanhuan Yan, Lihua Yao, Zhihong Hu
Fermentation.2024; 10(3): 167. CrossRef
Screening and evaluation of antibacterial active strains of Actinomycetes isolated from Northern Indian soil for biofilm inhibition against selected ESKAPE pathogens
Muzammil Sharief Dar, Iqbal Ahmad
Journal of Umm Al-Qura University for Applied Sciences.2024;[Epub] CrossRef
Cordycepin Enhanced Therapeutic Potential of Gemcitabine against Cholangiocarcinoma via Downregulating Cancer Stem-Like Properties
Hong Kyu Lee, Yun-Jung Na, Su-Min Seong, Dohee Ahn, Kyung-Chul Choi
Biomolecules & Therapeutics.2024; 32(3): 368. CrossRef
Cordycepin alleviates hepatic fibrosis in association with the inhibition of glutaminolysis to promote hepatic stellate cell senescence
Zhu Liang, Keyan Zhang, Hongli Guo, Xujiao Tang, Mingzhu Chen, Jinsong Shi, Jing Yang
International Immunopharmacology.2024; 132: 111981. CrossRef
16S amplicon sequencing and untargeted metabolomics reveal changes in rumen microorganisms and metabolic pathways involved in the reduction of methane by cordycepin
Haokai Ma, Dengke Liu, Rui Liu, Yang Li, Modinat Tolani Lambo, Baisheng Dai, Weizheng Shen, Yongli Qu, Yonggen Zhang
Journal of Integrative Agriculture.2024;[Epub] CrossRef
Synergistic fermentation of Cordyceps militaris and herbal substrates boosts grower pig antioxidant and immune function
Chia-Chen Pi, Yu-Chieh Cheng, Chun-Chia Chen, Jai-Wei Lee, Chao-Nan Lin, Ming-Tang Chiou, Hui-Wen Chen, Chiu-Hsia Chiu
BMC Veterinary Research.2024;[Epub] CrossRef
Silkworm pupae globulin promotes Cordyceps militaris fermentation: Regulation of metabolic pathways enhances cordycepin synthesis and extends the synthesis phase
Yi-Tong Li, Hao-Tian Yao, Ze-Lai Huang, Lu-Chan Gong, Richard A. Herman, Fu-An Wu, Jun Wang
Food Bioscience.2024; 59: 103971. CrossRef
Promising ingredients used for kimchi fermentation: Effects of cordyceps militaris fermentation products on the over-acidification and quality of kimchi
Tiejun Chen, Dejian Jiao, Zhe Wang, Meizi Piao
Food Bioscience.2024; 61: 104941. CrossRef
Evidence for Regulation of Cordycepin Biosynthesis by Transcription Factors Krüppel-Like Factor 4 and Retinoid X Receptor Alpha in Caterpillar Medicinal Mushroom Cordyceps militaris (Ascomycetes)
Hucheng Zhang, Lina Deng, Shuai Luo, Linying Liu, Guowei Yang, Yuning Zhang, Bo Gao, Dongqing Yang, Xiaojie Wang, Shuangshi Li, Xingjuan Li, Yaguang Jiang, Wenyan Lao, Frank Vriesekoop
International Journal of Medicinal Mushrooms.2024; 26(10): 19. CrossRef
Ethanolic extract from fruiting bodies of Cordyceps militaris HL8 exhibits cytotoxic activities against cancer cells, skin pathogenic yeasts, and postharvest pathogen Penicillium digitatum
Tao Xuan Vu, Tram Bao Tran, Hong-Ha Vu, Yen Thi Hoang Le, Phu Hung Nguyen, Thao Thi Do, Thu-Huong Nguyen, Van-Tuan Tran
Archives of Microbiology.2024;[Epub] CrossRef
Paecilomyces cicadae : a systematic overview of the biological activities and potential mechanisms of its active metabolites
Di Feiqian, Zhang Jiachan, Cheng Wenjing, Li Luyao, Li Meng, Wang Changtao
Food and Agricultural Immunology.2023;[Epub] CrossRef
Design, synthesis, antibacterial/antitumor activity and in vitro stability of novel cordycepin derivatives with unsaturated fatty acid chain
Shuhao Qu, Qiang Wang, Yanli Wang, Lihong Li, Lifei Zhu, Xiuhua Kuang, Xiaoli Wang, Huijuan Li, Longxuan Zhao, Hong Dai
European Journal of Pharmaceutical Sciences.2023; 187: 106466. CrossRef
Development of an efficient method for separation and purification of cordycepin from liquid fermentation of Cordyceps militaris and analysis of cordycepin antitumor activity
Peng-xiao Liu, Jie-xin Ma, Rui-na Liang, Xiang-wei He, Guo-zhu Zhao
Heliyon.2023; 9(3): e14184. CrossRef
A novel complementary pathway of cordycepin biosynthesis in Cordyceps militaris
Hucheng Zhang, Jun Yang, Shuai Luo, Linying Liu, Guowei Yang, Bo Gao, Haitao Fan, Lina Deng, Ming Yang
International Microbiology.2023; 27(4): 1009. CrossRef
Antifungal Mechanism of Cinnamon Essential Oil against Chinese Yam-Derived Aspergillus niger
Mingcheng Wang, Huiyuan Liu, Yuanyuan Dang, Dahong Li, Zhu Qiao, Gailing Wang, Guo Liu, Jin Xu, Enzhong Li, Anand Babu Perumal
Journal of Food Processing and Preservation.2023; 2023: 1. CrossRef
Characterization of a Plant Growth-Promoting Endohyphal Bacillus subtilis in Fusarium acuminatum from Spiranthes sinensis
LAN FANG, XIAO ZHENG, ZHENGXIANG SUN, YANYAN LI, JIANXIN DENG, YI ZHOU
Polish Journal of Microbiology.2023; 72(1): 29. CrossRef
Cordycepin: A review of strategies to improve the bioavailability and efficacy
Min Chen, Jiahao Luo, Wenming Jiang, Lijing Chen, Longxing Miao, Chunchao Han
Phytotherapy Research.2023; 37(9): 3839. CrossRef
Efficient de novo production of bioactive cordycepin by Aspergillus oryzae using a food-grade expression platform
Sukanya Jeennor, Jutamas Anantayanon, Sarocha Panchanawaporn, Chanikul Chutrakul, Wanwipa Vongsangnak, Kobkul Laoteng
Microbial Cell Factories.2023;[Epub] CrossRef
Effects of Acremonium terricola Culture on the Growth, Slaughter Yield, Immune Organ, Serum Biochemical Indexes, and Antioxidant Indexes of Geese
Jinyuan Chen, Yawen Guo, Yang Lu, Zhaoyuan He, Yali Zhu, Shuyu Liu, Kaizhou Xie
Animals.2022; 12(9): 1164. CrossRef
Plant and fungi derived analgesic natural products targeting voltage-gated sodium and calcium channels
Aida Calderon-Rivera, Santiago Loya-Lopez, Kimberly Gomez, Rajesh Khanna
Channels.2022; 16(1): 198. CrossRef
Multifunctional dynamic toolbox: cordycepin plays a therapeutic role in various disorders
Nur Syahirah H.S. Hadi, Anis A. Jamaludin, Tharani Kalaiyarasan, Kartikeya Tiwari
Reviews in Medical Microbiology.2022; 33(1): e23. CrossRef
Cordycepin exhibits anti-bacterial and anti-inflammatory effects against gastritis in Helicobacter pylori-infected mice
Wenjie Kong, Weidong Liu, Man Wang, Wenjia Hui, Yan Feng, Jiajie Lu, Buya Miranbieke, Huan Liu, Feng Gao
Pathogens and Disease.2022;[Epub] CrossRef
Gene rppA co-regulated by LRR, SigA, and CcpA mediates antibiotic resistance in Bacillus thuringiensis
Xia Cai, Xuelian Li, Jiaxin Qin, Yizhuo Zhang, Bing Yan, Jun Cai
Applied Microbiology and Biotechnology.2022; 106(17): 5687. CrossRef
Chinese Cordyceps: Bioactive Components, Antitumor Effects and Underlying Mechanism—A Review
Yan Liu, Zhi-Jian Guo, Xuan-Wei Zhou
Molecules.2022; 27(19): 6576. CrossRef
Gold nanoparticle-DNA aptamer-assisted delivery of antimicrobial peptide effectively inhibits Acinetobacter baumannii infection in mice
Jaeyeong Park, Eunkyoung Shin, Ji-Hyun Yeom, Younkyung Choi, Minju Joo, Minho Lee, Je Hyeong Kim, Jeehyeon Bae, Kangseok Lee
Journal of Microbiology.2022; 60(1): 128. CrossRef
Cordycepin enhances hyperthermia-induced apoptosis and cell cycle arrest by modulating the MAPK pathway in human lymphoma U937 cells
Liying Shi, He Cao, Siyu Fu, Zixian Jia, Xuan Lu, Zhengguo Cui, Dayong Yu
Molecular Biology Reports.2022; 49(9): 8673. CrossRef
Research Progress on Cordycepin Synthesis and Methods for Enhancement of Cordycepin Production in Cordyceps militaris
Li Wang, Huanhuan Yan, Bin Zeng, Zhihong Hu
Bioengineering.2022; 9(2): 69. CrossRef
Cordycepin as a Metabolite with Pharmacological Potential: A Review
Shivani Sharma, Kashish Madaan, Ravneet Kaur
International Journal of Medicinal Mushrooms.2022; 24(8): 1. CrossRef
Study on the Inhibitory Activity and Possible Mechanism of Myriocin on Clinically Relevant Drug-Resistant Candida albicans and Its Biofilms
Xin Yang, Zejun Pei, Renjing Hu, Zhehao Zhang, Zaixiang Lou, Xin Sun
Biological and Pharmaceutical Bulletin.2021; 44(3): 305. CrossRef
Label free-based proteomic analysis of the food spoiler Pseudomonas fluorescens response to lactobionic acid by SWATH-MS
Shimo Kang, Chunlei Shi, Jiang Chang, Fanhua Kong, Mohan Li, Boyuan Guan, Zhenghan Zhang, Xinyang Shi, Huiwen Zhao, Yanqi Peng, Yan Zheng, Xiqing Yue
Food Control.2021; 123: 107834. CrossRef
Isolation, identification, and control of a resistant bacterium strain found in Ku shui rose pure dew
Lijun Ling, Caiyun Yang, Wenxia Ma, Yunhua Zhao, Shenglai Feng, Yixin Tu, Nan Wang, Zibin Li, Lu Lu
Journal of Food Processing and Preservation.2021;[Epub] CrossRef
The Antibacterial Properties of 4, 8, 4′, 8′-Tetramethoxy (1,1′-biphenanthrene) -2,7,2′,7′-Tetrol from Fibrous Roots of Bletilla striata
Xue-Jiao Huang, Nan Xiong, Bo-Chen Chen, Fan Luo, Min Huang, Zhi-Shan Ding, Chao-Dong Qian
Indian Journal of Microbiology.2021; 61(2): 195. CrossRef
Drug Delivery of Natural Products Through Nanocarriers for Effective Breast Cancer Therapy: A Comprehensive Review of Literature
Kah Min Yap, Mahendran Sekar, Shivkanya Fuloria, Yuan Seng Wu, Siew Hua Gan, Nur Najihah Izzati Mat Rani, Vetriselvan Subramaniyan, Chandrakant Kokare, Pei Teng Lum, M Yasmin Begum, Shankar Mani, Dhanalekshmi Unnikrishnan Meenakshi, Kathiresan V Sathasiva
International Journal of Nanomedicine.2021; Volume 16: 7891. CrossRef
Evaluation of Anti-Biofilm Capability of Cordycepin Against Candida albicans
Yu Wang, Zejun Pei, Zaixiang Lou, Hongxin Wang
Infection and Drug Resistance.2021; Volume 14: 435. CrossRef
Enhanced production of cordycepin in Ophiocordyceps sinensis using growth supplements under submerged conditions
Vikas Kaushik, Amanvir Singh, Aditi Arya, Sangeeta Chahal Sindhu, Anil Sindhu, Ajay Singh
Biotechnology Reports.2020; 28: e00557. CrossRef
A How-To Guide for Mode of Action Analysis of Antimicrobial Peptides
Ann-Britt Schäfer, Michaela Wenzel
Frontiers in Cellular and Infection Microbiology.2020;[Epub] CrossRef
Synthesis of cordycepin: Current scenario and future perspectives
Liyang Yang, Guilan Li, Zhi Chai, Qiang Gong, Jianquan Guo
Fungal Genetics and Biology.2020; 143: 103431. CrossRef

Review

Minireview] Microbial radiation-resistance mechanisms: Kwang-Woo Jung , Sangyong Lim , Yong-Sun Bahn; J. Microbiol. 2017;55(7):499-507. Published online June 30, 2017; DOI: https://doi.org/10.1007/s12275-017-7242-5

54 View
0 Download
40 Crossref

Abstract

Organisms living in extreme environments have evolved a wide range of survival strategies by changing biochemical and physiological features depending on their biological niches. Interestingly, organisms exhibiting high radiation resistance have been discovered in the three domains of life (Bacteria, Archaea, and Eukarya), even though a naturally radiationintensive environment has not been found. To counteract the deleterious effects caused by radiation exposure, radiation- resistant organisms employ a series of defensive systems, such as changes in intracellular cation concentration, excellent DNA repair systems, and efficient enzymatic and non-enzymatic antioxidant systems. Here, we overview past and recent findings about radiation-resistance mechanisms in the three domains of life for potential usage of such radiationresistant microbes in the biotechnology industry.

Citations

Citations to this article as recorded by

The planetary protection strategy of Mars Sample Return’s Earth Return Orbiter mission
Giuseppe Cataldo, Lorenz Affentranger, Brian G. Clement, Daniel P. Glavin, David W. Hughes, John Hall, Bruno Sarli, Christine E. Szalai
Journal of Space Safety Engineering.2024; 11(2): 374. CrossRef
Insights into the Impact of Physicochemical and Microbiological Parameters on the Safety Performance of Deep Geological Repositories
Mar Morales-Hidalgo, Cristina Povedano-Priego, Marcos F. Martinez-Moreno, Miguel A. Ruiz-Fresneda, Margarita Lopez-Fernandez, Fadwa Jroundi, Mohamed L. Merroun
Microorganisms.2024; 12(5): 1025. CrossRef
Wireless Battery-free and Fully Implantable Organ Interfaces
Aman Bhatia, Jessica Hanna, Tucker Stuart, Kevin Albert Kasper, David Marshall Clausen, Philipp Gutruf
Chemical Reviews.2024; 124(5): 2205. CrossRef
Editorial: Rising stars in fungal pathogenesis: 2023
Brian L. Wickes, Adriana Marcela Celis Ramírez, Michal A. Olszewski, Yong-Sun Bahn
Frontiers in Cellular and Infection Microbiology.2024;[Epub] CrossRef
WP15 ConCorD state-of-the-art report (container corrosion under disposal conditions)
Andrés G. Muñoz, Abdesselam Abdelouas, Ursula Alonso, Ana María Fernández, Rizlan Bernier-Latmani, Andrea Cherkouk, Roberto Gaggiano, James Hesketh, Nick Smart, Cristiano Padovani, Kristel Mijnendonckx, Vanessa Montoya, Andrés Idiart, Arnau Pont, Olga Rib
Frontiers in Nuclear Engineering.2024;[Epub] CrossRef
Relationships between radiation, wildfire and the soil microbial communities in the Chornobyl Exclusion Zone
Alexandre Barretto de Menezes, Sergii Gashchak, Michael D. Wood, Nicholas A. Beresford
Science of The Total Environment.2024; 950: 175381. CrossRef
UV-B Halotolerant Bacteria from Marakkanam Saltpan and Biology of UV-B Tolerant Pontibacillus salipaludis Based on Whole Genome Sequencing
Amit Kumar
Geomicrobiology Journal.2024; 41(2): 183. CrossRef
Unraveling radiation resistance strategies in two bacterial strains from the high background radiation area of Chavara-Neendakara: A comprehensive whole genome analysis
Sowptika Pal, Ramani Yuvaraj, Hari Krishnan, Balasubramanian Venkatraman, Jayanthi Abraham, Anilkumar Gopinathan, Hari S. Misra
PLOS ONE.2024; 19(6): e0304810. CrossRef
Optimization Function for Determining Optimal Dose Range for Beef and Seed Potato Irradiation
Elena Kozlova, Ulyana Bliznyuk, Alexander Chernyaev, Polina Borshchegovskaya, Arcady Braun, Victoria Ipatova, Sergey Zolotov, Alexander Nikitchenko, Natalya Chulikova, Anna Malyuga, Yana Zubritskaya, Timofey Bolotnik, Anastasia Oprunenko, Aleksandr Kozlov
Foods.2024; 13(23): 3729. CrossRef
Impact of microbial processes on the safety of deep geological repositories for radioactive waste
Miguel A. Ruiz-Fresneda, Marcos F. Martinez-Moreno, Cristina Povedano-Priego, Mar Morales-Hidalgo, Fadwa Jroundi, Mohamed L. Merroun
Frontiers in Microbiology.2023;[Epub] CrossRef
Ionizing radiation effects on microorganisms and its applications in the food industry
Emmanuel Kormla Danyo, Maria Ivantsova, Irina Selezneva
Foods and Raw Materials.2023; 12(1): 1. CrossRef
Impact of radioactive contamination of soils on the diversity of micropopulation and the transformation of organic substances
I. Gudkov, I. Volkohon, V. Illienko, M. Lazarev, A. Klepko
Agricultural Science and Practice.2023; 9(3): 3. CrossRef
Aging of fuel-containing materials (fuel debris) in the Chornobyl (Chernobyl) Nuclear Power Plant and its implication for the decommissioning of the Fukushima Daiichi Nuclear Power Station
Toru Kitagaki, Viktor A. Krasnov, Atsushi Ikeda-Ohno
Journal of Nuclear Materials.2023; 576: 154224. CrossRef
Impact of ionizing radiation on the environmental microbiomes of Chornobyl wetlands
Elin Videvall, Pablo Burraco, Germán Orizaola
Environmental Pollution.2023; 330: 121774. CrossRef
Geography and environmental pressure are predictive of class‐specific radioresistance in black fungi
Lorenzo Aureli, Claudia Coleine, Manuel Delgado‐Baquerizo, Dag Ahren, Alessia Cemmi, Ilaria Di Sarcina, Silvano Onofri, Laura Selbmann
Environmental Microbiology.2023; 25(12): 2931. CrossRef
Wort disinfection treatment with electron beam for bioethanol production
Rubens Perez Calegari, Eric Alberto da Silva, Ana Paula Maria da Silva, Marcelo Pego Gomes, Layna Amorim Mota, Valter Arthur, Antonio Sampaio Baptista
Scientia Agricola.2023;[Epub] CrossRef
Redox status and metabolomic profiling of thioredoxin reductase inhibitors and 4 kGy ionizing radiation-exposed Deinococcus radiodurans
M. Sudharsan, N. Rajendra Prasad, G. Kanimozhi, B.S. Rishiikeshwer, G.R. Brindha, Anindita Chakraborty
Microbiological Research.2022; 261: 127070. CrossRef
Sphingomonas radiodurans sp. nov., a novel radiation-resistant bacterium isolated from the north slope of Mount Everest
Yang Liu, Tuo Chen, Xiaowen Cui, Yeteng Xu, Shixin Hu, Yidan Zhao, Wei Zhang, Guangxiu Liu, Gaosen Zhang
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
Sequence, structure, and function of the Dps DNA-binding protein from Deinococcus wulumuqiensis R12
Yao Chen, Zhihan Yang, Xue Zhou, Mengmeng Jin, Zijie Dai, Dengming Ming, Zhidong Zhang, Liying Zhu, Ling Jiang
Microbial Cell Factories.2022;[Epub] CrossRef
PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation
Yerli Marín‐Tovar, Hugo Serrano‐Posada, Adelaida Díaz‐Vilchis, Enrique Rudiño‐Piñera
Proteins: Structure, Function, and Bioinformatics.2022; 90(9): 1684. CrossRef
An insight into the mechanisms of homeostasis in extremophiles
Adithi Somayaji, Chetan Roger Dhanjal, Rathnamegha Lingamsetty, Ramesh Vinayagam, Raja Selvaraj, Thivaharan Varadavenkatesan, Muthusamy Govarthanan
Microbiological Research.2022; 263: 127115. CrossRef
Synthetic fungal melanin nanoparticles with excellent antioxidative property
Hengjie Zhang, Chuhao Huang, Jianhua Zhang, Chao Wang, Tianyou Wang, Shun Shi, Zhipeng Gu, Yiwen Li
Giant.2022; 12: 100120. CrossRef
Genomic Insights into the Radiation-Resistant Capability of Sphingomonas qomolangmaensis S5-59T and Sphingomonas glaciei S8-45T, Two Novel Bacteria from the North Slope of Mount Everest
Yang Liu, Xiaowen Cui, Ruiqi Yang, Yiyang Zhang, Yeteng Xu, Guangxiu Liu, Binglin Zhang, Jinxiu Wang, Xinyue Wang, Wei Zhang, Tuo Chen, Gaosen Zhang
Microorganisms.2022; 10(10): 2037. CrossRef
Response of soil microbial communities to natural radionuclides along specific-activity gradients
Guangwen Feng, Jinlong Yong, Qian Liu, Henglei Chen, Peihong Mao
Ecotoxicology and Environmental Safety.2022; 246: 114156. CrossRef
Questioning the radiation limits of life: Ignicoccus hospitalis between replication and VBNC
Dagmar Koschnitzki, Ralf Moeller, Stefan Leuko, Bartos Przybyla, Kristina Beblo-Vranesevic, Reinhard Wirth, Harald Huber, Reinhard Rachel, Petra Rettberg
Archives of Microbiology.2021; 203(4): 1299. CrossRef
Global Warming, Climate Change, and Environmental Pollution: Recipe for a Multifactorial Stress Combination Disaster
Sara I. Zandalinas, Felix B. Fritschi, Ron Mittler
Trends in Plant Science.2021; 26(6): 588. CrossRef
The Transcriptomic and Phenotypic Response of the Melanized Yeast Exophiala dermatitidis to Ionizing Particle Exposure
Zachary Schultzhaus, Amy Chen, Igor Shuryak, Zheng Wang
Frontiers in Microbiology.2021;[Epub] CrossRef
Genomic characterization and proteomic analysis of the halotolerant Micrococcus luteus SA211 in response to the presence of lithium
Fabiana Lilian Martínez, Verónica Beatriz Rajal, Verónica Patricia Irazusta
Science of The Total Environment.2021; 785: 147290. CrossRef
Helical and linear morphotypes ofArthrospirasp. PCC 8005 display genomic differences and respond differently to60Co gamma irradiation
Anu Yadav, Pieter Monsieurs, Agnieszka Misztak, Krzysztof Waleron, Natalie Leys, Ann Cuypers, Paul J. Janssen
European Journal of Phycology.2020; 55(2): 129. CrossRef
Gamma Radiation Tolerance and Protein Carbonylation Caused by Irradiation of Resting Cysts in the Free-living Ciliated Protist Colpoda cucullus
Ryota Saito, Ryota Koizumi, Tatsuya Sakai, Taiga Shimizu, Taiki Ono, Yoichiro Sogame
Acta Protozoologica.2020; 59(2): 67. CrossRef
Carotenoids as a Protection Mechanism against Oxidative Stress in Haloferax mediterranei
Micaela Giani, Rosa María Martínez-Espinosa
Antioxidants.2020; 9(11): 1060. CrossRef
Active Galactic Nuclei: Boon or Bane for Biota?
Manasvi Lingam, Idan Ginsburg, Shmuel Bialy
The Astrophysical Journal.2019; 877(1): 62. CrossRef
Computational search for UV radiation resistance strategies in Deinococcus swuensis isolated from Paramo ecosystems
Jorge Díaz-Riaño, Leonardo Posada, Iván Camilo Acosta, Carlos Ruíz-Pérez, Catalina García-Castillo, Alejandro Reyes, María Mercedes Zambrano, Hari S. Misra
PLOS ONE.2019; 14(12): e0221540. CrossRef
GATA-type transcription factors play a vital role in radiation sensitivity of Cryptococcus neoformans by regulating the gene expression of specific amino acid permeases
Wanchang Cui, XiangHong Li, Lisa Hull, Mang Xiao
Scientific Reports.2019;[Epub] CrossRef
Reducing the ionizing radiation background does not significantly affect the evolution of Escherichia coli populations over 500 generations
Nathanael Lampe, Pierre Marin, Marianne Coulon, Pierre Micheau, Lydia Maigne, David Sarramia, Fabrice Piquemal, Sébastien Incerti, David G. Biron, Camille Ghio, Télesphore Sime-Ngando, Thomas Hindre, Vincent Breton
Scientific Reports.2019;[Epub] CrossRef
Covalent Modification of Amino Acids and Peptides Induced by Ionizing Radiation from an Electron Beam Linear Accelerator Used in Radiotherapy
Benjamin B. Minkoff, Steven T. Bruckbauer, Grzegorz Sabat, Michael M. Cox, Michael R. Sussman
Radiation Research.2019; 191(5): 447. CrossRef
Genome analysis of Rubritalea profundi SAORIC-165T, the first deep-sea verrucomicrobial isolate, from the northwestern Pacific Ocean
Jaeho Song, Ilnam Kang, Yochan Joung, Susumu Yoshizawa, Ryo Kaneko, Kenshiro Oshima, Masahira Hattori, Koji Hamasaki, Kazuhiro Kogure, Soochan Kim, Kangseok Lee, Jang-Cheon Cho
Journal of Microbiology.2019; 57(5): 413. CrossRef
Shifts in microbial community composition in tannery-contaminated soil in response to increased gamma radiation
Mohammad A. A. Al-Najjar, Majed M. Albokari
Annals of Microbiology.2019; 69(13): 1567. CrossRef
Colloquium: Physical constraints for the evolution of life on exoplanets
Manasvi Lingam, Abraham Loeb
Reviews of Modern Physics.2019;[Epub] CrossRef
Enhanced biodegradation and kinetics of anthraquinone dye by laccase from an electron beam irradiated endophytic fungus
Kavitha Keshava Navada, Ganesh Sanjeev, Ananda Kulal
International Biodeterioration & Biodegradation.2018; 132: 241. CrossRef

Research Support, Non-U.S. Gov't

Photosynthetic inhibition and oxidative stress to the toxic Phaeocystis globosa caused by a diketopiperazine isolated from products of algicidal bacterium metabolism: Shuo Tan , Xiaoli Hu , Pinghe Yin , Ling Zhao; J. Microbiol. 2016;54(5):364-375. Published online April 20, 2016; DOI: https://doi.org/10.1007/s12275-016-6012-0

44 View
0 Download
42 Crossref

Abstract

Algicidal bacteria have been turned out to be available for inhibiting Phaeocystis globosa which frequently caused harmful algal blooms and threatened to economic development and ecological balance. A marine bacterium Bacillus sp. Ts-12 exhibited significant algicidal activity against P. globosa by indirect attack. In present study, an algicidal compound was isolated by silica gel column, Sephadex G-15 column and HPLC, further identified as hexahydropyrrolo[1,2-a]pyrazine- 1,4-dione, cyclo-(Pro-Gly), by GC-MS and 1H-NMR. Cyclo-(Pro-Gly) significantly increased the level of reactive oxygen species (ROS) within P. globosa cells, further activating the enzymatic and non-enzymatic antioxidant systems, including superoxide dismutase (SOD), catalase (CAT), glutathione (GSH) and ascorbic acid (AsA). The increase in methane dicarboxylic aldehyde (MDA) content showed that the surplus ROS induced lipid peroxidation on membrane system. Transmission electron microscope (TEM) and flow cytometry (FCM) analysis revealed that cyclo-(Pro-Gly) caused reduction of Chl-a content, destruction of cell membrane integrity, chloroplasts and nuclear structure. Real-time PCR assay showed that the transcriptions of photosynthesis related genes (psbA, psbD, rbcL) were significantly inhibited. This study indicated that cyclo-(Pro-Gly) from marine Bacillus sp. Ts-12 exerted photosynthetic inhibition and oxidative stress to P. globosa and eventually led to the algal cells lysis. This algicidal compound might be potential bio-agent for controlling P. globosa red tide.

Citations

Citations to this article as recorded by

Salinity-dependent top-down effect of rotifer Brachionus plicatilis on removing harmful alga Phaeocystis globosa
Yunfei Sun, Xiaoru Qian, Hang Wu, Gongyuan Wang, Yannan Li, Qingqing Yu, Zhou Yang
Marine Pollution Bulletin.2024; 199: 116044. CrossRef
Natural algicidal compounds: Strategies for controlling harmful algae and application
Huili Li, Ronglian Xing, Xingyu Ji, Yi Liu, Xinran Chu, Jiaxin Gu, Shengnan Wang, Gexuan Wang, Shijun Zhao, Xuebin Cao
Plant Physiology and Biochemistry.2024; 215: 108981. CrossRef
Characterization of a novel algicidal bacteria Arenibacter sp. strain 6A1 and its application to eliminate harmful algal blooms
Sha Wu, Jing Tong, Jiahuan Chen, Minchun Chen, Liyan Wang, Shuangfei Li, Zhangli Hu, Huirong Chen
Frontiers in Marine Science.2024;[Epub] CrossRef
Proteomic insights of interaction between ichthyotoxic dinoflagellate Karenia mikimotoi and algicidal bacteria Maribacter dokdonensis
Thomas Chun-Hung Lee, Winnie Lam, Nora Fung-Yee Tam, Steven Jing-Liang Xu, Chak-Lam Lee, Fred Wang-Fat Lee
Marine Pollution Bulletin.2024; 209: 117227. CrossRef
Inhibitory effect and mechanism of algicidal bacteria on Chaetomorpha valida
Yaqi Geng, Ronglian Xing, Hongxia Zhang, Guoning Nan, Lihong Chen, Zhen Yu, Chuyao Liu, Huili Li
Science of The Total Environment.2024; 914: 169850. CrossRef
Investigating the molecular mechanisms of Pseudalteromonas sp. LD-B1's algicidal effects on the harmful alga Heterosigma akashiwo
Mingyang Xu, Yujiao Chen, Lei Chen, Yifan Chen, Xueyao Yin, Nanjing Ji, Yuefeng Cai, Song Sun, Xin Shen
Ecotoxicology and Environmental Safety.2024; 282: 116690. CrossRef
Influence of perfluoroalkyl substances, with focus on perfluorobutanoic acid on the responding characteristics and molecular mechanisms of Thalassiosira pseudonana
Jiayi Shi, Mengyang Hu, Zhilin Xia, Jirong Zhang, Ziniu Wang, Luying Li, Yan Zhao
Ecotoxicology and Environmental Safety.2024; 285: 117048. CrossRef
Effects of polystyrene microplastics on the extracellular and intracellular dissolved organic matter released by Skeletonema costatum using a novel in situ method
Xixue Chen, Yaxian Zhu, Yong Zhang
Environmental Pollution.2024; 359: 124604. CrossRef
Algicidal activity of a novel bacterium, Qipengyuania sp. 3-20A1M, against harmful Margalefidinium polykrikoides: Effects of its active compound
So-Ra Ko, Ve Van Le, Ankita Srivastava, Mingyeong Kang, Hee-Mock Oh, Chi-Yong Ahn
Marine Pollution Bulletin.2023; 186: 114397. CrossRef
Eutrophic water remediation efficiency of algicidal bacteria, Cellvibrio sp. G1 and Chitinimonas sp. G2, and their influence on microbial community structure
Tianyu Zhuo, Qiong Wan, Beibei Chai, Dajun Ren, Xiaohui Lei, Lixin He, Bin Chen
Algal Research.2023; 71: 103034. CrossRef
An insight into algicidal characteristics of Bacillus altitudinis G3 from dysfunctional photosystem and overproduction of reactive oxygen species
Xiping Hou, Yaoyao Yan, Yuqin Wang, Tao Jiang, Xiaohui Zhang, Xianzhu Dai, Yasuo Igarashi, Feng Luo, Caiyun Yang
Chemosphere.2023; 310: 136767. CrossRef
Functional role of a novel algicidal compound produced by Pseudoruegeria sp. M32A2M on the harmful algae Alexandrium catenella
So-Ra Ko, Yujin Jeong, Sang-Hyeok Cho, Eunju Lee, Bo-Seong Jeong, Seung Ho Baek, Byung-Ha Oh, Chi-Yong Ahn, Hee-Mock Oh, Byung-Kwan Cho, Suhyung Cho
Chemosphere.2022; 300: 134535. CrossRef
Algicidal Effects of a High-Efficiency Algicidal Bacterium Shewanella Y1 on the Toxic Bloom-Causing Dinoflagellate Alexandrium pacificum
Xi Chen, Dengyu Wang, Yanqun Wang, Pengfei Sun, Shuanghui Ma, Tiantian Chen
Marine Drugs.2022; 20(4): 239. CrossRef
Bacteria Associated With Phaeocystis globosa and Their Influence on Colony Formation
Shuaishuai Xu, Xiaodong Wang, Jie Liu, Fengli Zhou, Kangli Guo, Songze Chen, Zhao-hui Wang, Yan Wang
Frontiers in Microbiology.2022;[Epub] CrossRef
The ecological responses of bacterioplankton during a Phaeocystis globosa bloom in Beibu Gulf, China highlighted by integrated metagenomics and metatranscriptomics
Sha Xu, Cheng He, Zhenjun Kang, Shuqun Song, Caiwen Li
Marine Biology.2022;[Epub] CrossRef
A Novel Algicidal Bacterium, Microbulbifer sp. YX04, Triggered Oxidative Damage and Autophagic Cell Death in Phaeocystis globosa , Which Causes Harmful Algal Blooms
Xiaoying Zhu, Shuangshuang Chen, Guiying Luo, Wei Zheng, Yun Tian, Xueqian Lei, Luming Yao, Caiming Wu, Hong Xu, Vincent J. Denef
Microbiology Spectrum.2022;[Epub] CrossRef
Toxicity of triphenyl phosphate toward the marine rotifer Brachionus plicatilis: Changes in key life-history traits, rotifer-algae population dynamics and the metabolomic response
Zijie Sun, Wenqian Ma, Xuexi Tang, Xin Zhang, Yingying Yang, Xinxin Zhang
Ecotoxicology and Environmental Safety.2022; 241: 113731. CrossRef
Applying Surfactin in the Removal of Blooms of Karlodinium veneficum Increases the Toxic Potential
Xiaoyu Tian, Ran Meng, Chengxu Zhou, Yuanbo Pan, Xiaojun Yan
Journal of Marine Science and Engineering.2022; 10(2): 196. CrossRef
Methods to control harmful algal blooms: a review
Barathan Balaji-Prasath, Ying Wang, Yu Ping Su, David P. Hamilton, Hong Lin, Luwei Zheng, Yong Zhang
Environmental Chemistry Letters.2022; 20(5): 3133. CrossRef
Removal of harmful algae by Shigella sp. H3 and Alcaligenes sp. H5: algicidal pathways and characteristics
Gang Xue, Xiaonuan Wang, Chenlan Xu, Binxue Song, Hong Chen
Environmental Technology.2022; 43(27): 4341. CrossRef
Algicidal Bacteria: A Review of Current Knowledge and Applications to Control Harmful Algal Blooms
Kathryn J. Coyne, Yanfei Wang, Gretchen Johnson
Frontiers in Microbiology.2022;[Epub] CrossRef
Spatiotemporal dynamics of marine microbial communities following a Phaeocystis bloom: biogeography and co‐occurrence patterns
Sha Xu, Cheng He, Shuqun Song, Caiwen Li
Environmental Microbiology Reports.2021; 13(3): 294. CrossRef
Toxicological effects of hypoxanthine on Heterosigmaakashiwo: Mechanism of growth inhibition and change in hemolytic toxin content
Binbin Chen, Ling Zhao, Qiming Jimmy Yu
Ecotoxicology and Environmental Safety.2021; 226: 112797. CrossRef
Altering the Sex Pheromone Cyclo(l-Pro-l-Pro) of the Diatom Seminavis robusta towards a Chemical Probe
Eli Bonneure, Amber De Baets, Sam De Decker, Koen Van den Berge, Lieven Clement, Wim Vyverman, Sven Mangelinckx
International Journal of Molecular Sciences.2021; 22(3): 1037. CrossRef
Effect of algicidal compound Nω-acetylhistamine on physiological response and algal toxins in Heterosigma akashiwo
Qiuyin Zhu, Biyu Wu, Ling Zhao
Ecotoxicology and Environmental Safety.2021; 208: 111423. CrossRef
The potential of prodigiosin for control of Prorocentrum donghaiense blooms: Algicidal properties and acute toxicity to other marine organisms at various trophic levels
Yingjie Chen, Guiying Luo, Shuangshuang Chen, Danyang Zhang, Wanxin Xie, Zengge Wang, Wei Zheng, Hong Xu
Ecotoxicology and Environmental Safety.2021; 228: 112913. CrossRef
The complete genome sequence of the algicidal bacterium Bacillus subtilis strain JA and the use of quorum sensing to evaluate its antialgal ability
Sheng-Jie Zhang, Xiao-Peng Du, Jian-Ming Zhu, Chen-Xu Meng, Jin Zhou, Ping Zuo
Biotechnology Reports.2020; 25: e00421. CrossRef
Allelopathic Inhibition by the Bacteria Bacillus cereus BE23 on Growth and Photosynthesis of the Macroalga Ulva prolifera
Naicheng Li, Jingyao Zhang, Xinyu Zhao, Pengbin Wang, Mengmeng Tong, Patricia M. Glibert
Journal of Marine Science and Engineering.2020; 8(9): 718. CrossRef
Continuous production of algicidal compounds against Akashiwo sanguinea via a Vibrio sp. co-culture
Yue Wang, Shuangfei Li, Guozhu Liu, Xiaoqiang Li, Qixia Yang, Ying Xu, Zhangli Hu, Chun-Yen Chen, Jo-Shu Chang
Bioresource Technology.2020; 295: 122246. CrossRef
The Antialgal Mechanism of Luteolin-7-O-Glucuronide on Phaeocystis globosa by Metabolomics Analysis
Jingyi Zhu, Yeyin Yang, Shunshan Duan, Dong Sun
International Journal of Environmental Research and Public Health.2019; 16(17): 3222. CrossRef
Effects of Lanthanum on the Photosystem II Energy Fluxes and Antioxidant System of Chlorella Vulgaris and Phaeodactylum Tricornutum
Dong Sun, Ning He, Qi Chen, Shunshan Duan
International Journal of Environmental Research and Public Health.2019; 16(12): 2242. CrossRef
Algicidal characterization and mechanism of Bacillus licheniformis Sp34 against Microcystis aeruginosa in Dianchi Lake
Jinyu Liu, Caiyun Yang, Yuxin Chi, Donghao Wu, Xianzhu Dai, Xiaohui Zhang, Yasuo Igarashi, Feng Luo
Journal of Basic Microbiology.2019; 59(11): 1112. CrossRef
Small-Sized Microplastics Negatively Affect Rotifers: Changes in the Key Life-History Traits and Rotifer–Phaeocystis Population Dynamics
Yunfei Sun, Wenjie Xu, Qiujin Gu, Yitong Chen, Qiming Zhou, Lu Zhang, Lei Gu, Yuan Huang, Kai Lyu, Zhou Yang
Environmental Science & Technology.2019; 53(15): 9241. CrossRef
Nutritional strategy for the preferential uptake of $${{text{NO}}_{3}}^{ - } {text{{-}N}}$$ by Phaeocystis globosa
Xuning Lv, Zaixing Wu, Xiuxian Song, Yongquan Yuan, Xihua Cao, Zhiming Yu
Hydrobiologia.2019; 846(1): 109. CrossRef
Growth Inhibition of Phaeocystis Globosa Induced by Luteolin-7-O-glucuronide from Seagrass Enhalus acoroides
Jingyi Zhu, Han Xiao, Qi Chen, Min Zhao, Dong Sun, Shunshan Duan
International Journal of Environmental Research and Public Health.2019; 16(14): 2615. CrossRef
Isolation of an algicidal bacterium and its effects against the harmful-algal- bloom dinoflagellate Prorocentrum donghaiense (Dinophyceae)
Xinguo Shi, Lemian Liu, Yue Li, Yuchun Xiao, Guangmao Ding, Senjie Lin, Jianfeng Chen
Harmful Algae.2018; 80: 72. CrossRef
Combined algicidal effect of urocanic acid,N-acetylhistamine andl-histidine to harmful algaPhaeocystis globosa
Luer Zhuang, Ling Zhao, Pinghe Yin
RSC Advances.2018; 8(23): 12760. CrossRef
Study on the metabolites of DH-e, a Halomonas marine bacterium, against three toxic dinoflagellate species
Di Wang, Liling Xie, Xingbiao Zhu, Xiao Bi, Yuzhong Zheng, Yankun Zhu
Water Science and Technology.2018; 78(7): 1535. CrossRef
Investigation of the Inhibitory Effects of Mangrove Leaves and Analysis of Their Active Components on Phaeocystis globosa during Different Stages of Leaf Age
Min Zhao, Han Xiao, Dong Sun, Shunshan Duan
International Journal of Environmental Research and Public Health.2018; 15(11): 2434. CrossRef
NprR-NprX Quorum-Sensing System Regulates the Algicidal Activity of Bacillus sp. Strain S51107 against Bloom-Forming Cyanobacterium Microcystis aeruginosa
Lishuang Wu, Xingliang Guo, Xianglong Liu, Hong Yang
Frontiers in Microbiology.2017;[Epub] CrossRef
Strategies and ecological roles of algicidal bacteria
Nils Meyer, Arite Bigalke, Anett Kaulfuß, Georg Pohnert
FEMS Microbiology Reviews.2017; 41(6): 880. CrossRef
Trade-off between reproduction and lifespan of the rotifer Brachionus plicatilis under different food conditions
Yunfei Sun, Xinying Hou, Xiaofeng Xue, Lu Zhang, Xuexia Zhu, Yuan Huang, Yafen Chen, Zhou Yang
Scientific Reports.2017;[Epub] CrossRef

Review

MINIREVIEW] Regulation of Escherichia coli RNase III activity: Boram Lim , Minji Sim , Howoon Lee , Seogang Hyun , Younghoon Lee , Yoonsoo Hahn , Eunkyoung Shin , Kangseok Lee; J. Microbiol. 2015;53(8):487-494. Published online July 31, 2015; DOI: https://doi.org/10.1007/s12275-015-5323-x

81 View
0 Download
12 Crossref

Abstract

Bacterial cells respond to changes in the environment by adjusting their physiological reactions. In cascades of cellular responses to stresses of various origins, rapid modulation of RNA function is known to be an effective biochemical adaptation. Among many factors affecting RNA function, RNase III, a member of the phylogenetically highly conserved endoribonuclease III family, plays a key role in posttranscriptional regulatory pathways in Escherichia coli. In this review, we provide an overview of the factors affecting RNase III activity in E. coli.

Citations

Citations to this article as recorded by

Comparative Transcriptomic Analysis of Flagellar-Associated Genes in Salmonella Typhimurium and Its rnc Mutant
Seungmok Han, Ji-Won Byun, Minho Lee
Journal of Microbiology.2024; 62(1): 33. CrossRef
arfAantisense RNA regulates MscL excretory activity
Rosa Morra, Fenryco Pratama, Thomas Butterfield, Geizecler Tomazetto, Kate Young, Ruth Lopez, Neil Dixon
Life Science Alliance.2023; 6(6): e202301954. CrossRef
Transcriptome and metabolome analyses of response of Synechocystis sp. PCC 6803 to methyl viologen
Xinyu Hu, Tianyuan Zhang, Kai Ji, Ke Luo, Li Wang, Wenli Chen
Applied Microbiology and Biotechnology.2021; 105(21-22): 8377. CrossRef
Endoribonuclease-mediated control of hns mRNA stability constitutes a key regulatory pathway for Salmonella Typhimurium pathogenicity island 1 expression
Minho Lee, Minkyung Ryu, Minju Joo, Young-Jin Seo, Jaejin Lee, Hong-Man Kim, Eunkyoung Shin, Ji-Hyun Yeom, Yong-Hak Kim, Jeehyeon Bae, Kangseok Lee, William Navarre
PLOS Pathogens.2021; 17(2): e1009263. CrossRef
Trans-acting regulators of ribonuclease activity
Jaejin Lee, Minho Lee, Kangseok Lee
Journal of Microbiology.2021; 59(4): 341. CrossRef
RNase III, Ribosome Biogenesis and Beyond
Maxence Lejars, Asaki Kobayashi, Eliane Hajnsdorf
Microorganisms.2021; 9(12): 2608. CrossRef
The rnc Gene Regulates the Microstructure of Exopolysaccharide in the Biofilm of Streptococcus mutans through the β-Monosaccharides
Yangyu Lu, Hongyu Zhang, Meng Li, Mengying Mao, Jiaqi Song, Yalan Deng, Lei Lei, Yingming Yang, Tao Hu
Caries Research.2021; 55(5): 534. CrossRef
Distributive enzyme binding controlled by local RNA context results in 3′ to 5′ directional processing of dicistronic tRNA precursors byEscherichia coliribonuclease P
Jing Zhao, Michael E Harris
Nucleic Acids Research.2019; 47(3): 1451. CrossRef
RNase G controls tpiA mRNA abundance in response to oxygen availability in Escherichia coli
Jaejin Lee, Dong-Ho Lee, Che Ok Jeon, Kangseok Lee
Journal of Microbiology.2019; 57(10): 910. CrossRef
The coordinated action of RNase III and RNase G controls enolase expression in response to oxygen availability in Escherichia coli
Minho Lee, Minju Joo, Minji Sim, Se-Hoon Sim, Hyun-Lee Kim, Jaejin Lee, Minkyung Ryu, Ji-Hyun Yeom, Yoonsoo Hahn, Nam-Chul Ha, Jang-Cheon Cho, Kangseok Lee
Scientific Reports.2019;[Epub] CrossRef
Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III inStreptococcus pyogenes
Anaïs Le Rhun, Anne-Laure Lécrivain, Johan Reimegård, Estelle Proux-Wéra, Laura Broglia, Cristina Della Beffa, Emmanuelle Charpentier
Nucleic Acids Research.2017; : gkw1316. CrossRef
Regulation and functions of bacterial PNPase
Federica Briani, Thomas Carzaniga, Gianni Dehò
WIREs RNA.2016; 7(2): 241. CrossRef

Research Support, Non-U.S. Gov'ts

The Intracellular Mechanism of Action on Escherichia coli of BF2-A/C, Two Analogues of the Antimicrobial Peptide Buforin 2: Gang Hao , Yong-Hui Shi , Ya-Li Tang , Guo-Wei Le; J. Microbiol. 2013;51(2):200-206. Published online April 27, 2013; DOI: https://doi.org/10.1007/s12275-013-2441-1

42 View
0 Download
32 Scopus

Abstract: In the present study, the antimicrobial peptides BF2-A and BF2-C, two analogues of Buforin 2, were chemically synthesized and the activities were assayed. To elucidate the bactericidal mechanism of BF2-A/C and their different antimicrobial activities, the influence of peptides to E. coli cell membrane and targets of intracellular action were researched. Obviously, BF2-A and BF2-C did not induce the influx of PI into the E. coli cells, indicating nonmemebrane permeabilizing killing action. The FITC-labeled BF2-A/C could penetrate the E. coli cell membrane and BF2-C penetrated the cells more efficiently. Furthermore, BF2-A/C could bind to DNA and RNA respectively, and the affinity of BF2-C to DNA was powerful at least over 4 times than that of BF2-A. The present results implied that BF2-A and BF2-C inhibited the cellular functions by binding to DNA and RNA of cells after penetrating the cell membranes, resulting in the rapid cell death. The structure-activity relationship analysis of BF2-A/C revealed that the cell-penetrating efficiency and the affinity ability to DNA were critical factors for determining the antimicrobial potency of both peptides. The more efficient cellpenetrating and stronger affinity to DNA caused that BF2-C displayed more excellent antimicrobial activity and rapid killing kinetics than BF2-A.

The Use of Pseudomonas fluorescens P13 to Control Sclerotinia Stem Rot (Sclerotinia sclerotiorum) of Oilseed Rape: Hui Li , Huaibo Li , Yan Bai , Jing Wang , Ming Nie , Bo Li , Ming Xiao; J. Microbiol. 2011;49(6):884-889. Published online December 28, 2011; DOI: https://doi.org/10.1007/s12275-011-1261-4

35 View
0 Download
28 Scopus

Abstract: Sclerotinia stem rot (SSR) caused by the fungus Sclerotinia sclerotiorum has been an increasing threat to oilseed rape (Brassica napus L.) cultivation. Efficient and environment‐friendly treatments are much needed. Here we focus on microbial control. The Pseudomonas fluorescens P13 that was isolated from oilseed rape cultivation soil, proved to be a useful biocontrol strain for application. Morphology, physiological and biochemical tests and 16S rDNA analysis demonstrated that it was P. fluorescens P13 and that it had a broad antagonistic spectrum, significantly lessening the mycelial growth of S. sclerotiorum by 84.4% and suppressing sclerotial formation by 95‐100%. Scanning electron microscopy studies attested that P13 deformed S. sclerotiorum mycelia when they were cultured together. P13 did not produce chitinase but did produce hydrogen cyanide (HCN) which was likely one of the antagonistic mechanisms. The density of P13 remained at a high level (≥106 CFU/ml) during 5 weeks in the rhizosphere soil and roots. P13 reduced SSR severity at least by 59% in field studies and also promoted seedling growth (p<0.05) at the seedling stage. From these data, our work provided evidence that P13 could be a good alternative biological resource for biocontrol of S. sclerotiorum.

Antifungal Activity and Mechanism of Fengycin in the Presence and Absence of Commercial Surfactin Against Rhizopus stolonifer: Yang Tao , Xiao-mei Bie , Feng-xia Lv , Hai-zhen Zhao , Zhao-xin Lu; J. Microbiol. 2011;49(1):146-150. Published online March 3, 2011; DOI: https://doi.org/10.1007/s12275-011-0171-9

27 View
0 Download
81 Scopus

Abstract: The antifungal activity and mechanism of fengycin in the presence and absence of commercial surfactin against Rhizopus stolonifer were investigated. The MIC (minimal inhibitory concentration) of fengycin without commercial surfactin added was 0.4 mg/ml while the MIC of fengycin with commercial surfactin added was 2.0 mg/ml. Fengycin acted on cell membrane and cellular organs and inhibited DNA synthesis. The antifungal effect of fengycin was reduced after commercial surfactin was added. All these results suggest that the fungal cell membrane may be the primary target of fengycin action and commercial surfactin may reduce the antifungal activity of fengycin.

DRA0336, Another OxyR Homolog, Involved in the Antioxidation Mechanisms in Deinococcus radiodurans: Longfei Yin , Liangyan Wang , Huiming Lu , Guangzhi Xu , Huan Chen , Hongdan Zhan , Bing Tian , Yuejin Hua; J. Microbiol. 2010;48(4):473-479. Published online August 20, 2010; DOI: https://doi.org/10.1007/s12275-010-0043-8

37 View
0 Download
29 Scopus

Abstract: A novel OxyR (DR0615) with one conserved cysteine that senses hydrogen peroxide in Deinococcus radiodurans had been identified in our previous work. Comparative genomics revealed that D. radiodurans possesses another OxyR homolog, OxyR2 (DRA0336). In this study, we constructed the deletion mutant of oxyR2 and the double mutant of both the OxyR homologs to investigate the role of OxyR in response to oxidative stress in D. radiodurans. Deletion of oxyR2 resulted in an obviously increased sensitivity to hydrogen peroxide, and the double mutant for oxyR and oxyR2 was significantly more sensitive than any of the two single mutants. The total catalase activity of the double mutant was lower than that of any of the single mutants, and reactive oxygen species (ROS) accumulated to a greater extent. DNA microarray analysis further suggested that oxyR2 was involved in antioxidation mechanisms. Site-direct mutagenesis and complementation analysis revealed that C228 in OxyR2 was essential. This is the first report of the presence of two OxyR in one organism. These results suggest that D. radiodurans OxyR and OxyR2 function together to protect the cell against oxidative stress.

Physiological characterization of kinetics and action mechanism of vibrio hemolysin: Choe, Young Chool , Jeong, Ga Jin; J. Microbiol. 1995;33(4):289-294.

39 View
0 Download

Abstract: The action mechanism of hemolysin rendering virulency of Vibrio anguilarum has not clarified as yet, even though there were several possible factors explained. We have studied hemolytic kinetics performed by hemolysin from V. anguillarum strain V7 as well as binding of hemolysin to RBC membrane. Maximal rate of hemolysis and duration of lag phase were directly and inversly correlated to the concentration of hemolysin used. Hemolysin molecules are known to bind consumptively with proper diameter, while other protectants with smaller diameter could not. In conclusion, hemolysin should bind irreversibly to RBC membrane exert hemolysis distorting osmotic pressure. The binding could be hindered by spatial structure of the RBC surfacem which might be caused by sialic acid.

Catalytic mechanism and inhibition studies of purine nucleoside phosphorylase (PNP) in micrococcus luteus: Choi , Hye Seon; J. Microbiol. 1997;35(1):15-20.

39 View
0 Download

Abstract: Kinetic studies were done to elucidate the reaction mechanism of purine nucleoside phosphorylase (PNP) in Micrococcus Luteus. PNP catalyzes the reversible phosphorolysis of ribonucleosides to their respective base. The effect of alternative competing substrates suggested that a single enzyme was involved in binding to the active site for all purine nucleosides, inosine, deoxyiosine, guanosine, deoxyguanosine, adenosine and deoxyadenosine. Affinity studies showed that pentose moiety reduced the binding capacity and methylation of ring N-1 of inosine and guanosine had little effect on binding to bacterial enzyme, whereas these compounds did not bind to the mammalian enzymes. The initial velocity and product inhibition studies demonstrated that the predominant mechanism of reaction was an ordered bi, bi reaction. The nucleoside bound to the enzyme first, followed by phosphate. Ribose 1-phosphate was the first product to leave, followed by base.

Laboratory Developed fluoroquinolone Resistant Escherichia coli Has a new Missense Mutation in QRDR of PartC: Lee, Soon Deuk , Lee, Yeon Hee; J. Microbiol. 1998;36(2):106-110.

41 View
0 Download

Abstract: The fluoroquinolone resistance mechanism of four laboratory developed fluorquinolone resistant strains of Escherichia coli was studied. Fluoroquinolone concentrations inside the resistant cells were similar to the concentrations in the susceptible cells. DNA sequencing of the quinolone resistance determining regions (QRDR) in gyrA and parC revealed the presence of Ser 83Leu and Asp87Gly mutations in GyrA, and Gly78Cys and Ser80Arh mutations in ParC of the ofloxacin, norfloxacin, and HK3140 resistant strains, while the ciprofloxacin resistant strain had Ser83Leu and Aasp87Tyr mutations in GyrA, and Gly78Cys and Ser80Ile mutations in ParC. A Gly78Cys substitution in ParC was newly detected in this work and seemed to be responsible for the extremely high MICs to fluroquinolones.

First
Prev
Page of 1
Next
Last

Search