Stenotrophomonas panacihumi sp. nov., Isolated from Soil of a Ginseng Field

Hoonbok Yi; Sathiyaraj Srinivasan; Myung Kyum Kim

doi:10.1007/s12275-010-0006-0

Articles

Page Path: HOME > J. Microbiol > Volume 48(1); 2010 > Article

Research Support, Non-U.S. Gov't
Stenotrophomonas panacihumi sp. nov., Isolated from Soil of a Ginseng Field: Hoonbok Yi , Sathiyaraj Srinivasan , Myung Kyum Kim; Journal of Microbiology 2010;48(1):30-35.
DOI: https://doi.org/10.1007/s12275-010-0006-0
Published online: March 11, 2010

Department of Bio and Environmental Technology, Division of Environmental and Life Science, College of Natural Science, Seoul Women's University, Seoul 139-774, Republic of KoreaDepartment of Bio and Environmental Technology, Division of Environmental and Life Science, College of Natural Science, Seoul Women's University, Seoul 139-774, Republic of Korea

Corresponding author: Myung Kyum Kim , Tel: +82-2-970-5667,

Received: 6 January 2010 • Accepted: 17 February 2010

prev next

55 Views
0 Download
17 Crossref
22 Scopus

Full Article

Abstract

The study isolated a Gram-negative, rod-shaped, non-motile bacterium from the soil of a ginseng field in Daejeon, South Korea and characterized it to determine its taxonomic position. Phylogenetic analysis, based on the 16S rRNA gene sequence, revealed that strain MK06T belongs to the family Xanthomonadacea, and showed the highest degree of sequence similarity to Stenotrophomonas rhizophila e-p10T (98.6%), Xanthomonas campestris LMG 568T (98.0%), Stenotrophomonas maltophilia ATCC 1d3637T (97.3%), and Stenotrophomonas humi R-32729T (96.9%). Chemotaxonomic data revealed that strain MK06T possesses ubiquinone Q-8 as the predominant respiratory lipoquinone, which is common in the genus tenotrophomonas, and that the predominant fatty acids were 15:0 iso (41.1%), 15:0 anteiso (12.6%), and 17:1 iso ω9c (8.6%). The results of physiological and biochemical tests clearly demonstrated that strain MK06T represents a distinct species and supported its affiliation with the genus Stenotrophomonas. Based on these data, MK06T (KCTC, 22893T; JCM, 16536T; KEMB, 9004-002T) should be classified as the type strain for a novel species, for which we propose the name Stenotrophomonas panacihumi sp. nov.

Keywords: 16S rRNA gene;S. panacihumi;taxonomy;Xanthomonadaceae

Figure & Data

References

Citations

Citations to this article as recorded by

Revised taxonomic classification of the Stenotrophomonas genomes, providing new insights into the genus Stenotrophomonas
Ze-Lin Yu, Rui-Bai Wang
Frontiers in Microbiology.2024;[Epub] CrossRef
Plant growth-promoting characteristics of halotolerant endophytic bacteria isolated from Sporobolus specatus (Vahr) Kunth and Cyperus laevigatus L. of Ethiopian rift valley lakes
Solomon Enquahone, Guido van Marle, Addis Simachew
Archives of Microbiology.2022;[Epub] CrossRef
Parvibaculum sedimenti sp. nov., A Novel Soil Bacterium Isolated from Sediment
Yuxin Wang, Xiaomei Ye, Xiangping Kong, Yonglan Xi, Jing Du, Yan Zhu, Di Gao, Jian He
Current Microbiology.2020; 77(9): 2056. CrossRef
Pseudoxanthomonas composti sp. nov., isolated from compost
Jun Lin, Guiqin Yang, Jia Tang, Zhen Li, Zhen Yu, Li Zhuang
Antonie van Leeuwenhoek.2019; 112(8): 1213. CrossRef
GET_PHYLOMARKERS, a Software Package to Select Optimal Orthologous Clusters for Phylogenomics and Inferring Pan-Genome Phylogenies, Used for a Critical Geno-Taxonomic Revision of the Genus Stenotrophomonas
Pablo Vinuesa, Luz E. Ochoa-Sánchez, Bruno Contreras-Moreira
Frontiers in Microbiology.2018;[Epub] CrossRef
Draft Genome Sequence of Stenotrophomonas bentonitica BII-R7 T , a Selenite-Reducing Bacterium Isolated from Spanish Bentonites
Iván Sánchez-Castro, Mohammed Bakkali, Mohamed L. Merroun
Genome Announcements.2017;[Epub] CrossRef
Evolutionary Genetic Analysis Uncovers Multiple Species with Distinct Habitat Preferences and Antibiotic Resistance Phenotypes in the Stenotrophomonas maltophilia Complex
Luz E. Ochoa-Sánchez, Pablo Vinuesa
Frontiers in Microbiology.2017;[Epub] CrossRef
Stenotrophomonas bentonitica sp. nov., isolated from bentonite formations
Iván Sánchez-Castro, Miguel Angel Ruiz-Fresneda, Mohammed Bakkali, Peter Kämpfer, Stefanie P. Glaeser, Hans Jürgen Busse, Margarita López-Fernández, Pablo Martínez-Rodríguez, Mohamed Larbi Merroun
International Journal of Systematic and Evolutionary Microbiology .2017; 67(8): 2779. CrossRef
Genome Sequence of Type Strains of Genus Stenotrophomonas
Prashant P. Patil, Samriti Midha, Sanjeet Kumar, Prabhu B. Patil
Frontiers in Microbiology.2016;[Epub] CrossRef
Diversity and distribution of the endophytic bacterial community at different stages of Eucalyptus growth
Paulo Sérgio Balbino Miguel, Marcelo Nagem Valério de Oliveira, Júlio César Delvaux, Guilherme Luiz de Jesus, Arnaldo Chaer Borges, Marcos Rogério Tótola, Júlio César Lima Neves, Maurício Dutra Costa
Antonie van Leeuwenhoek.2016; 109(6): 755. CrossRef
Dynamics of Panax ginseng Rhizospheric Soil Microbial Community and Their Metabolic Function
Yong Li, YiXin Ying, WanLong Ding, Shilin Chen
Evidence-Based Complementary and Alternative Medicine.2014;[Epub] CrossRef
Comparison among bacterial communities present in arenized and adjacent areas subjected to different soil management regimes
Camille Granada, Pedro Beschoren da Costa, Bruno Brito Lisboa, Luciano Kayser Vargas, Luciane M. P. Passaglia
Plant and Soil.2013; 373(1-2): 339. CrossRef
Conversion of Ginsenoside Rb1 and Taxonomical Characterization of Stenotrophomonas sp. 4KR4 from Ginseng Rhizosphere Soil
In-Hwa Jeon, Geon-Yeong Cho, Song-Ih Han, Sun Kyun Yoo, Kyung-Sook Whang
The Korean Journal of Microbiology.2013; 49(4): 369. CrossRef
Isolation and characterization of novel bacterial taxa from extreme alkali-saline soil
Wei Shi, Tetsuo Takano, Shenkui Liu
World Journal of Microbiology and Biotechnology.2012; 28(5): 2147. CrossRef
Stenotrophomonas interspecies differentiation and identification by gyrB sequence analysis
Liselott A. Svensson-Stadler, Sashka A. Mihaylova, Edward R.B. Moore
FEMS Microbiology Letters.2012; 327(1): 15. CrossRef
Stenotrophomonas maltophilia strains replicate and persist in the murine lung, but to significantly different degrees
Ruella Rouf, Sara M. Karaba, Jenny Dao, Nicholas P. Cianciotto
Microbiology .2011; 157(7): 2133. CrossRef
Identification of Stenotrophomonas maltophilia strains isolated from environmental and clinical samples: a rapid and efficient procedure
C. Pinot, A. Deredjian, S. Nazaret, E. Brothier, B. Cournoyer, C. Segonds, S. Favre-Bonté
Journal of Applied Microbiology.2011; 111(5): 1185. CrossRef

Cite this Article

Cite this Article: export Copy Download Format; Close

Download Citation

Download a citation file in RIS format that can be imported by all major citation management software, including EndNote, ProCite, RefWorks, and Reference Manager.

Format:

RIS — For EndNote, ProCite, RefWorks, and most other reference management software
BibTeX — For JabRef, BibDesk, and other BibTeX-specific software

Include:

Citation for the content below
Citation and abstract for the content below

Stenotrophomonas panacihumi sp. nov., Isolated from Soil of a Ginseng Field

J. Microbiol. 2010;48(1):30-35. Published online March 11, 2010

DOI: https://doi.org/10.1007/s12275-010-0006-0

Related articles