Supplementary Information

References

Citations

Citations to this article as recorded by  

• Anaerobic petroleum biodegradation by microbial communities enriched from mangrove sediments
  Jiahui Yan, Shan Zhang, Guoyong Lu, Junna Gao, Xiangwei Zeng, Fei Yu, Zhong Hu
  Marine Environmental Research.2026; 217: 107984.     CrossRef
• Environmental drivers of bacterial diversity, distribution, and predicted metabolic potential in Hainan Island mangrove sediments
  Fangyan Jiang, Wenxin Yuan, Bin Wei, Hong Wang, Yangfeng Wang, Pingxi Guo, Xiaoxiong Xu, Huimin Feng
  Frontiers in Marine Science.2026;[Epub]     CrossRef
• Seasonal dynamics in leaf litter decomposing microbial communities in temperate forests: a whole-genome- sequencing-based study
  Nataliia Khomutovska, Iwona Jasser, Polina Sarapultseva, Viktoria Spirina, Andrei Zaitsev, Jolanta Masłowiecka, Valery A. Isidorov
  PeerJ.2024; 12: e17769.     CrossRef
• Assessing the Presence of Petroleum Hydrocarbons in the Punta Carnero Estuary (Ecuador)
  Enrique Veloz-Zambrano, Johnny Chavarría, Inmaculada Pulido-Calvo
  Water, Air, & Soil Pollution.2024;[Epub]     CrossRef
• Diversity, composition and potential roles of sedimentary microbial communities in different coastal substrates around subtropical Okinawa Island, Japan
  Kohei Hamamoto, Masaru Mizuyama, Miyuki Nishijima, Ayumi Maeda, Kodai Gibu, Angelo Poliseno, Akira Iguchi, James Davis Reimer
  Environmental Microbiome.2024;[Epub]     CrossRef
• Mangroves: A hotspot for novel bacterial and archaeal diversity
  Baskaran V, Mahalakshmi A, Prabavathy V.R
  Rhizosphere.2023; 27: 100748.     CrossRef
• Comparative genomics reveals the acquisition of mobile genetic elements by the plant growth-promoting Pantoea eucrina OB49 in polluted environments
  Abdelmalek Lekired, Hafsa Cherif-Silini, Allaoua Silini, Hamza Ben Yahia, Hadda-Imene Ouzari
  Genomics.2023; 115(2): 110579.     CrossRef
• Editorial: Advancements in the Understanding of Anthropogenic Impacts on the Microbial Ecology and Function of Aquatic Environments
  Rodrigo G. Taketani, Francisco Dini-Andreote, Sara Beier, Camila Fernandez
  Frontiers in Microbiology.2022;[Epub]     CrossRef
• Comparative Genomics Reveals the Acquisition of a Novel Transposon Tn.ArsmerS12 by the Plant Growth-Promoting Pantoea Eucrina OB49 in Polluted Environments
  Abdelmalek Lekired, Hafsa Cherif-Silini, Allaoua Silini, Hamza Ben Yahia, Hadda Ouzari
  SSRN Electronic Journal .2022;[Epub]     CrossRef
• Diversity and Taxonomy of Soil Bacterial Communities in Urban and Rural Mangrove Forests of the Panama Bay
  Indira J. Quintero, Anakena M. Castillo, Luis C. Mejía
  Microorganisms.2022; 10(11): 2191.     CrossRef
• Water Accommodated Fraction of Macondo Oil Has Limited Effects on Nitrate Reduction in Northern Gulf of Mexico Salt Marsh Sediments Regardless of Prior Oiling History
  Derek G. Tollette, Behzad Mortazavi, Corianne Tatariw, Nikaela Flournoy, Patricia A. Sobecky
  Water, Air, & Soil Pollution.2022;[Epub]     CrossRef
• A Systematic Review of the Physicochemical and Microbial Diversity of Well-Preserved, Restored, and Disturbed Mangrove Forests: What Is Known and What Is the Way Forward?
  Jiayong Lai, Wee Cheah, Kishneth Palaniveloo, Rempei Suwa, Sahadev Sharma
  Forests.2022; 13(12): 2160.     CrossRef
• Active bacterial and archaeal communities in coastal sediments: Biogeography pattern, assembly process and co-occurrence relationship
  Mingyue Li, Tiezhu Mi, Hui He, Ye Chen, Yu Zhen, Zhigang Yu
  Science of The Total Environment.2021; 750: 142252.     CrossRef
• Effects of algal bloom (AB) on sediment microorganisms with special functions at different AB stages in Chaohu Lake
  Hongfu Bao, Yiwei Li, Xiaojun Diao, Shuguang Wang
  Water Science and Technology.2021; 83(5): 1130.     CrossRef
• Methanotrophic Community Detected by DNA-SIP at Bertioga’s Mangrove Area, Southeast Brazil
  Débora do Carmo Linhares, Flávia Talarico Saia, Rubens Tadeu Delgado Duarte, Cristina Rossi Nakayama, Itamar Soares de Melo, Vivian Helena Pellizari
  Microbial Ecology.2021; 81(4): 954.     CrossRef
• Diversity, metabolism and cultivation of archaea in mangrove ecosystems
  Cui-Jing Zhang, Yu-Lian Chen, Yi-Hua Sun, Jie Pan, Ming-Wei Cai, Meng Li
  Marine Life Science & Technology.2021; 3(2): 252.     CrossRef
• Molecular and culture-based surveys of metabolically active hydrocarbon-degrading archaeal communities in Sundarban mangrove sediments
  Shayantan Mukherji, Anandita Ghosh, Chandrima Bhattacharyya, Ivy Mallick, Anish Bhattacharyya, Suparna Mitra, Abhrajyoti Ghosh
  Ecotoxicology and Environmental Safety.2020; 195: 110481.     CrossRef
• Influence of bioaugmentation and biostimulation on PAH degradation in aged contaminated soils: Response and dynamics of the bacterial community
  Nagalakshmi Haleyur, Esmaeil Shahsavari, Sohni Singh Jain, Eman Koshlaf, Vivek B. Ravindran, Paul D. Morrison, A. Mark Osborn, Andrew S. Ball
  Journal of Environmental Management.2019; 238: 49.     CrossRef
• Intraspecific variation on epiphytic bacterial community from Laguncularia racemosa phylloplane
  Marta A. Moitinho, Josiane B. Chiaramonte, Danilo T. Souza, Juanita H. Solano, Laura Bononi, Itamar S. Melo, Rodrigo G. Taketani
  Brazilian Journal of Microbiology.2019; 50(4): 1041.     CrossRef
• The Fe(II)-oxidizingZetaproteobacteria: historical, ecological and genomic perspectives
  Sean M McAllister, Ryan M Moore, Amy Gartman, George W Luther, David Emerson, Clara S Chan
  FEMS Microbiology Ecology.2019;[Epub]     CrossRef
• Depth-related change of sulfate-reducing bacteria community in mangrove sediments: The influence of heavy metal contamination
  Sijie Wu, Ruili Li, Shuguang Xie, Cong Shi
  Marine Pollution Bulletin.2019; 140: 443.     CrossRef
• Metataxonomic and metagenomic analysis of mangrove microbiomes reveals community patterns driven by salinity and pH gradients in Paranaguá Bay, Brazil
  Denny Marcel Ceccon, Helisson Faoro, Paulo da Cunha Lana, Emanuel Maltempi de Souza, Fábio de Oliveira Pedrosa
  Science of The Total Environment.2019; 694: 133609.     CrossRef
• Comparative metagenomics study reveals pollution induced changes of microbial genes in mangrove sediments
  Yingdong Li, Liping Zheng, Yue Zhang, Hongbin Liu, Hongmei Jing
  Scientific Reports.2019;[Epub]     CrossRef
• Bacterial Succession Decreases Network Complexity During Plant Material Decomposition in Mangroves
  Marta A. Moitinho, Laura Bononi, Danilo T. Souza, Itamar S. Melo, Rodrigo G. Taketani
  Microbial Ecology.2018; 76(4): 954.     CrossRef
• Metagenomic insights into the phylogenetic and functional profiles of soil microbiome from a managed mangrove in Malaysia
  Gunaselvam Priya, Nyok-Sean Lau, Go Furusawa, Balachandra Dinesh, Swee Yeok Foong, Al-Ashraf Abdullah Amirul
  Agri Gene.2018; 9: 5.     CrossRef
• Construction of Effective Minimal Active Microbial Consortia for Lignocellulose Degradation
  Pilar Eliana Puentes-Téllez, Joana Falcao Salles
  Microbial Ecology.2018; 76(2): 419.     CrossRef
• Co-occurrence patterns of litter decomposing communities in mangroves indicate a robust community resistant to disturbances
  Rodrigo G. Taketani, Marta A. Moitinho, Tim H. Mauchline, Itamar S. Melo
  PeerJ.2018; 6: e5710.     CrossRef
• The synergistic effect of a consortium of protozoan isolates (Paramecium sp., Vorticella sp., Epistylis sp. and Opercularia sp.) on the biodegradation of petroleum hydrocarbons in wastewater
  L. Kachieng’a, M.N.B. Momba
  Journal of Environmental Chemical Engineering.2018; 6(4): 4820.     CrossRef
• Potential microbial consortium involved in the biodegradation of diesel, hexadecane and phenanthrene in mangrove sediment explored by metagenomics analysis
  Parichaya Tiralerdpanich, Prinpida Sonthiphand, Ekawan Luepromchai, Onruthai Pinyakong, Prayad Pokethitiyook
  Marine Pollution Bulletin.2018; 133: 595.     CrossRef
• A comparative study revealed first insights into the diversity and metabolisms of the microbial communities in the sediments of Pacmanus and Desmos hydrothermal fields
  Hai-liang Wang, Jian Zhang, Qing-lei Sun, Chao Lian, Li Sun, Tzen-Yuh Chiang
  PLOS ONE.2017; 12(7): e0181048.     CrossRef
• Distinct Habitats Select Particular Bacterial Communities in Mangrove Sediments
  Lidianne L. Rocha, Geórgia B. Colares, Vanessa L. R. Nogueira, Fernanda A. Paes, Vânia M. M. Melo
  International Journal of Microbiology.2016; 2016: 1.     CrossRef
• Bacterial communities in water and sediment shaped by paper mill pollution and indicated bacterial taxa in sediment in Daling River
  Jianguo Guo, Longhao Zhao, Weihong Lu, Hongliang Jia, Yeqing Sun
  Ecological Indicators.2016; 60: 766.     CrossRef
• Soil-Derived Microbial Consortia Enriched with Different Plant Biomass Reveal Distinct Players Acting in Lignocellulose Degradation
  Maria Julia de Lima Brossi, Diego Javier Jiménez, Larisa Cortes-Tolalpa, Jan Dirk van Elsas
  Microbial Ecology.2016; 71(3): 616.     CrossRef
• Role of environmental factors and microorganisms in determining the fate of polycyclic aromatic hydrocarbons in the marine environment
  Robert Duran, Cristiana Cravo-Laureau, Corina Brussaard
  FEMS Microbiology Reviews.2016; 40(6): 814.     CrossRef
• Bacterial Communities in the Rhizospheres of Three Mangrove Tree Species from Beilun Estuary, China
  Peng Wu, Xiaofei Xiong, Zhanzhou Xu, Chuqian Lu, Hao Cheng, Xiangli Lyu, Jinghuai Zhang, Wei He, Wei Deng, Yihua Lyu, Quansheng Lou, Yiguo Hong, Hongda Fang, Zhen-guang Yan
  PLOS ONE.2016; 11(10): e0164082.     CrossRef
• Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea
  Hanin Alzubaidy, Magbubah Essack, Tareq B. Malas, Ameerah Bokhari, Olaa Motwalli, Frederick Kinyua Kamanu, Suhaiza Ahmad Jamhor, Noor Azlin Mokhtar, André Antunes, Marta Filipa Simões, Intikhab Alam, Salim Bougouffa, Feras F. Lafi, Vladimir B. Bajic, John
  Gene.2016; 576(2): 626.     CrossRef
• Microbiomes and potential metabolic pathways of pristine and anthropized Brazilian mangroves
  Vanessa L.R. Nogueira, Lidianne L. Rocha, Geórgia B. Colares, Alysson Lira Angelim, Leonardo R.O. Normando, Maurício E. Cantão, Lucymara F. Agnez-Lima, Fernando Dini Andreote, Vânia M.M. Melo
  Regional Studies in Marine Science.2015; 2: 56.     CrossRef
• Bacterial and Archaeal Communities in Sediments of the North Chinese Marginal Seas
  Jiwen Liu, Xiaoshou Liu, Min Wang, Yanlu Qiao, Yanfen Zheng, Xiao-Hua Zhang
  Microbial Ecology.2015; 70(1): 105.     CrossRef
• Dynamics and distribution of bacterial and archaeal communities in oil-contaminated temperate coastal mudflat mesocosms
  Gbemisola O. Sanni, Frédéric Coulon, Terry J. McGenity
  Environmental Science and Pollution Research.2015; 22(20): 15230.     CrossRef
• Dynamic of sulphate-reducing microorganisms in petroleum-contaminated marine sediments inhabited by the polychaete Hediste diversicolor
  Magalie Stauffert, Cristiana Cravo-Laureau, Robert Duran
  Environmental Science and Pollution Research.2015; 22(20): 15273.     CrossRef
• Anthropogenic impact on diazotrophic diversity in the mangrove rhizosphere revealed by nifH pyrosequencing
  Hongmei Jing, Xiaomin Xia, Hongbin Liu, Zhi Zhou, Chen Wu, Sanjay Nagarajan
  Frontiers in Microbiology.2015;[Epub]     CrossRef
• Spatiotemporal Analysis of Bacterial Diversity in Sediments of Sundarbans Using Parallel 16S rRNA Gene Tag Sequencing
  Pijush Basak, Niladri Shekhar Majumder, Sudip Nag, Anish Bhattacharyya, Debojyoti Roy, Arpita Chakraborty, Sohan SenGupta, Arunava Roy, Arghya Mukherjee, Rudradip Pattanayak, Abhrajyoti Ghosh, Dhrubajyoti Chattopadhyay, Maitree Bhattacharyya
  Microbial Ecology.2015; 69(3): 500.     CrossRef
• Moisture effects on gas-phase biofilter ammonia removal efficiency, nitrous oxide generation, and microbial communities
  Liangcheng Yang, Angela D. Kent, Xinlei Wang, Ted L. Funk, Richard S. Gates, Yuanhui Zhang
  Journal of Hazardous Materials.2014; 271: 292.     CrossRef
• Variations of Bacterial Community Structure and Composition in Mangrove Sediment at Different Depths in Southeastern Brazil
  Lucas Mendes, Siu Tsai
  Diversity.2014; 6(4): 827.     CrossRef
• Response of Archaeal Communities to Oil Spill in Bioturbated Mudflat Sediments
  Magalie Stauffert, Robert Duran, Claire Gassie, Cristiana Cravo-Laureau
  Microbial Ecology.2014; 67(1): 108.     CrossRef
• Sulphur‐oxidizing and sulphate‐reducing communities in Brazilian mangrove sediments
  Maryeimy Varon‐Lopez, Armando Cavalcante Franco Dias, Cristiane Cipolla Fasanella, Ademir Durrer, Itamar Soares Melo, Eiko Eurya Kuramae, Fernando Dini Andreote
  Environmental Microbiology.2014; 16(3): 845.     CrossRef
• Response of the Archaeal Community to Simulated Petroleum Hydrocarbon Contamination in Marine and Hypersaline Ecosystems
  Diogo Jurelevicius, Camila Rattes de Almeida Couto, Vanessa Marques Alvarez, Renata Estebanez Vollú, Felipe de Almeida Dias, Lucy Seldin
  Water, Air, & Soil Pollution.2014;[Epub]     CrossRef
• The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments
  Nicole M. Scott, Matthias Hess, Nick J. Bouskill, Olivia U. Mason, Janet K. Jansson, Jack A. Gilbert
  Frontiers in Microbiology.2014;[Epub]     CrossRef
• Assessment of the efficiency of in situ bioremediation techniques in a creosote polluted soil: Change in bacterial community
  R. Simarro, N. González, L.F. Bautista, M.C. Molina
  Journal of Hazardous Materials.2013; 262: 158.     CrossRef
• Biodegradation of aged diesel in diverse soil matrixes: impact of environmental conditions and bioavailability on microbial remediation capacity
  Nora B. Sutton, Pauline van Gaans, Alette A. M. Langenhoff, Farai Maphosa, Hauke Smidt, Tim Grotenhuis, Huub H. M. Rijnaarts
  Biodegradation.2013; 24(4): 487.     CrossRef
• Biodegradation of high-molecular-weight polycyclic aromatic hydrocarbons by a wood-degrading consortium at low temperatures
  Raquel Simarro, Natalia González, Luis Fernando Bautista, Maria Carmen Molina
  FEMS Microbiology Ecology.2013; 83(2): 438.     CrossRef
• Shifts in phylogenetic diversity of archaeal communities in mangrove sediments at different sites and depths in southeastern Brazil
  Lucas William Mendes, Rodrigo Gouvêa Taketani, Acácio Aparecido Navarrete, Siu Mui Tsai
  Research in Microbiology.2012; 163(5): 366.     CrossRef
• The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics
  Fernando Dini Andreote, Diego Javier Jiménez, Diego Chaves, Armando Cavalcante Franco Dias, Danice Mazzer Luvizotto, Francisco Dini-Andreote, Cristiane Cipola Fasanella, Maryeimy Varon Lopez, Sandra Baena, Rodrigo Gouvêa Taketani, Itamar Soares de Melo, A
  PLoS ONE.2012; 7(6): e38600.     CrossRef
• The Selection Exerted by Oil Contamination on Mangrove Fungal Communities
  Cristiane Cipola Fasanella, Armando Cavalcante Franco Dias, Janaina Rigonato, Marli de Fátima Fiore, Fábio Lino Soares, Itamar Soares Melo, Aline Aparecida Pizzirani-Kleiner, Jan Dirk van Elsas, Fernando Dini Andreote
  Water, Air, & Soil Pollution.2012; 223(7): 4233.     CrossRef
• Microbial diversity and anaerobic hydrocarbon degradation potential in an oil-contaminated mangrove sediment
  Luiza L Andrade, Deborah CA Leite, Edir M Ferreira, Lívia Q Ferreira, Geraldo R Paula, Michael J Maguire, Casey RJ Hubert, Raquel S Peixoto, Regina MCP Domingues, Alexandre S Rosado
  BMC Microbiology.2012;[Epub]     CrossRef
• Archaeal communities in the sediments of three contrasting mangroves
  Armando Cavalcante Franco Dias, Francisco Dini-Andreote, Rodrigo Gouvêa Taketani, Siu Mui Tsai, João Lúcio Azevedo, Itamar Soares de Melo, Fernando Dini Andreote
  Journal of Soils and Sediments.2011; 11(8): 1466.     CrossRef
• Diversity and identification of methanogenic archaea and sulphate-reducing bacteria in sediments from a pristine tropical mangrove
  Rodrigo Gouvêa Taketani, Caio Augusto Yoshiura, Armando Cavalcante Franco Dias, Fernando Dini Andreote, Siu Mui Tsai
  Antonie van Leeuwenhoek.2010; 97(4): 401.     CrossRef