Skip Navigation
Skip to contents

Journal of Microbiology : Journal of Microbiology

OPEN ACCESS
SEARCH
Search

Articles

Page Path
HOME > J. Microbiol > Volume 48(3); 2010 > Research Support, Non-U.S. Gov't
Research Support, Non-U.S. Gov't
Assessment of Soil Fungal Communities Using Pyrosequencing
Young Woon Lim 1, Byung Kwon Kim 2, Changmu Kim 1, Hack Sung Jung 3, Bong-Soo Kim 4, Jae-Hak Lee 5, Jongsik Chun 3,5
Journal of Microbiology 2010;48(3):284-289.
DOI: https://doi.org/10.1007/s12275-010-9369-5
Published online: June 23, 2010
1National Institute of Biological Resource, Incheon 404-708, Republic of Korea, 2Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 305-806, Republic of Korea, 3School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul 151-742, Republic of Korea, 4Division of Microbiology, National Center for Toxicological Research/U.S.FDA, Jefferson, AR 72079, USA, 5Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul 151-742, Republic of Korea
Corresponding author:  Jongsik Chun , Tel: +82-2-880-8153, 
Received: 30 November 2009   • Accepted: 22 January 2010
prev next
  • 343 Views
  • 0 Download
  • 89 Crossref
  • 113 Scopus

Citations

Citations to this article as recorded by  Crossref logo
  • Exploring the diversity and potential of host-associated microorganisms in Hypnum leptothallum to enhance plant resilience to drought stress for karst desertification restoration
    Shasha Wu, Yihong Xiang, Xiaofan Chen, Yueyan Lu, Yubi Li, Zheyu He, Qianya Zuo, Wei Cao, Jiaojiao Qu
    Environmental Microbiome.2026;[Epub]     CrossRef
  • Effect of Trichoderma atroviride Application on Tea Yield and Its Impact on the Soil Microbiome in a New Zealand Tea Plantation
    Prashansani M. D. Silva, Travis R. Glare, John Graham Hampton, Diwakar R. W. Kandula, Josefina Narciso
    Applied Microbiology.2026; 6(1): 9.     CrossRef
  • Forest Soil Fungal Diversity in Stands of Norway Spruce (Picea abies (L.) Karst.) of Different Ages
    Juris Katrevičs, Krišs Bitenieks, Āris Jansons, Baiba Jansone, Dainis Edgars Ruņģis
    Forests.2025; 16(3): 500.     CrossRef
  • Untrimmed ITS2 metabarcode sequences cause artificially reduced abundances of specific fungal taxa
    Kathleen E. Kyle, Jonathan L. Klassen, Irina S. Druzhinina
    Applied and Environmental Microbiology.2025;[Epub]     CrossRef
  • Teosinte-derived SynCom and precision biofertilization modulate the maize microbiome, enhancing growth, yield, and soil functionality in a Mexican field
    Juan Alfredo Hernández-García, Julio S. Bernal, Sanjay Antony-Babu, Lourdes Villa-Tanaca, César Hernández-Rodríguez, Esaú De-la-Vega-Camarillo
    Frontiers in Microbiology.2025;[Epub]     CrossRef
  • Study on Soil Nutrients and Microbial Community Diversity in Ancient Tea Plantations of China
    Jiaxin Li, Wei Huang, Xinyuan Lin, Waqar Khan, Hongbo Zhao, Binmei Sun, Shaoqun Liu, Peng Zheng
    Agronomy.2025; 15(7): 1608.     CrossRef
  • Effects of straw mulching on soil nutrient content and microbial community on the gentle slope arable land in dryland farming
    Zhixu Sun, Yu Wang, Ling Sun
    Archives of Agronomy and Soil Science.2023; 69(13): 2510.     CrossRef
  • Dynamic changes of microbial community composition and diversity in metal contaminated and reclaimed lands assessed by Illumina MiSeq sequencing
    Kabwe Nkongolo, Ramya Narendrula- Kotha
    Ecological Genetics and Genomics.2023; 26: 100163.     CrossRef
  • Exploring the mycobiota of bromeliads phytotelmata in Brazilian Campos Rupestres
    Vera Lúcia dos Santos, Ubiana Cássia Silva, Eduardo Horta Santos, Alessandra Abrão Resende, Marcela França Dias, Sara Cuadros-Orellana, Andréa Rodrigues Marques
    Brazilian Journal of Microbiology.2023; 54(3): 1885.     CrossRef
  • Logging has legacy effects on the structure of soil fungal communities several decades after cessation in Western Cascade forest stands
    Max W. Spencer, Bitty A. Roy, Tiffany E. Thornton, Lucas C. R. Silva, Krista L. McGuire
    Frontiers in Forests and Global Change.2023;[Epub]     CrossRef
  • Exploring the Role of Fungal Endophytes in the Sudden Death Syndrome of the Invasive Shrub Chrysanthemoides monilifera subsp. rotundata in Australia
    Louise Morin, Andrew B. Bissett, Rieks D. van Klinken
    Phytobiomes Journal.2022; 6(1): 13.     CrossRef
  • Migration and Transformation of Multiple Heavy Metals in the Soil–Plant System of E-Waste Dismantling Site
    Jianming Lu, Ming Yuan, Lanfang Hu, Huaiying Yao
    Microorganisms.2022; 10(4): 725.     CrossRef
  • Full Issue PDF

    Phytobiomes Journal.2022; 6(1): 1.     CrossRef
  • Influence of tea-Pleurotus ostreatus intercropping on soil fungal diversity and community structure
    Zhanxia Ma, Krizler C. Tanalgo, Qiuli Xu, Weitao Li, Shanshan Wu, Qing Ji, Gengyun Pan, Ruifang Wang, M. Anne Naeth
    Canadian Journal of Soil Science.2022; 102(2): 359.     CrossRef
  • Effects of fertilizer and waterlogging on the diversity and functioning of the microbial community in greenhouse cultivation soil
    Lina Deng, Lanyin Fu, Kaixin Zhang, Yuxiang Shen, Gongneng Feng, Li Zhang, Hongshan Li, Changqing Liu
    Chemical and Biological Technologies in Agriculture.2022;[Epub]     CrossRef
  • Modeling Root-Knot Nematode Regulation by the Biocontrol Fungus Pochonia chlamydosporia
    Aurelio Ciancio, Ileana Miranda Cabrera, Leopoldo Hidalgo-Diáz, Ana Puertas, Yoannia Castillo Duvergel
    Frontiers in Fungal Biology.2022;[Epub]     CrossRef
  • Community structure of fungal pathogens causing spikelet rot disease of naked oat from different ecological regions of China
    Longlong Liu, Mingchuan Ma, Zhang Liu, Lijun Zhang, Jianping Zhou
    Scientific Reports.2021;[Epub]     CrossRef
  • Soil ammonia-oxidizing archaea in a paddy field with different irrigation and fertilization managements
    Limin Wang, Dongfeng Huang
    Scientific Reports.2021;[Epub]     CrossRef
  • Ecology and Evolution of Marine Fungi With Their Adaptation to Climate Change
    Vinit Kumar, V. Venkateswara Sarma, Kasun M. Thambugala, Jun-Jie Huang, Xiang-Yang Li, Ge-Fei Hao
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • Soil microbial community composition in a paddy field with different fertilization managements
    Limin Wang, Dongfeng Huang
    Canadian Journal of Microbiology.2021; 67(12): 864.     CrossRef
  • Seasonal Variation in Fungal Community Composition Associated with Tamarix chinensis Roots in the Coastal Saline Soil of Bohai Bay, China
    Wei Zhang, Ali Bahadur, Wasim Sajjad, Xiukun Wu, Gaosen Zhang, Guangxiu Liu, Tuo Chen
    Microbial Ecology.2021; 82(3): 652.     CrossRef
  • Forest gaps mediate the structure and function of the soil microbial community in a Castanopsis kawakamii forest
    Xuelin Wang, Jinfu Liu, Zhongsheng He, Cong Xing, Jing Zhu, Xinguang Gu, Yiqi Lan, Zeyan Wu, Peichun Liao, Dehuang Zhu
    Ecological Indicators.2021; 122: 107288.     CrossRef
  • Macrofungal diversity of urbanized areas in southern part of Korea
    Sung Eun Cho, Young-Nam Kwag, Jong Won Jo, Sang-Kuk Han, Seung Hwan Oh, Chang Sun Kim
    Journal of Asia-Pacific Biodiversity.2020; 13(2): 189.     CrossRef
  • Climate and soil properties regulate soil fungal communities on the Loess Plateau
    Quanchao Zeng, Yang Liu, Li Xiao, Shaoshan An
    Pedobiologia.2020; 81-82: 150668.     CrossRef
  • Advances in monitoring soil microbial community dynamic and function
    K. K. Nkongolo, R. Narendrula-Kotha
    Journal of Applied Genetics.2020; 61(2): 249.     CrossRef
  • Biofertilisation with anaerobic digestates: A field study of effects on soil microbial abundance and diversity
    Janerson Jose Coelho, Aoife Hennessy, Imelda Casey, Caio Roberto Soares Bragança, Tony Woodcock, Nabla Kennedy
    Applied Soil Ecology.2020; 147: 103403.     CrossRef
  • The soil fungal community of native woodland in Andean Patagonian forest: A case study considering experimental forest management and seasonal effects
    Ayelen Inés Carron, Lucas Alejandro Garibaldi, Sebastian Marquez, Sonia Fontenla
    Forest Ecology and Management.2020; 461: 117955.     CrossRef
  • Comparison of Soil Higher Fungal Communities between Dead and Living Abies koreana in Mt. Halla, the Republic of Korea
    Chang Sun Kim, Jong Won Jo, Hyen Lee, Young-Nam Kwag, Sung Eun Cho, Seung Hwan Oh
    Mycobiology.2020; 48(5): 364.     CrossRef
  • The diversity and ecological roles of Penicillium in intertidal zones
    Myung Soo Park, Seung-Yoon Oh, Jonathan J. Fong, Jos Houbraken, Young Woon Lim
    Scientific Reports.2019;[Epub]     CrossRef
  • Soil Physicochemical Properties and the Rhizosphere Soil Fungal Community in a Mulberry (Morus alba L.)/Alfalfa (Medicago sativa L.) Intercropping System
    Mengmeng Zhang, Ning Wang, Jingyun Zhang, Yanbo Hu, Dunjiang Cai, Jianhua Guo, Di Wu, Guangyu Sun
    Forests.2019; 10(2): 167.     CrossRef
  • Fluazinam positively affected the microbial communities in clubroot cabbage rhizosphere
    Chunming Liu, Zhenfu Yang, Pengfei He, Shahzad Munir, Pengbo He, Yixin Wu, Honhing Ho, Yueqiu He
    Scientia Horticulturae.2019; 256: 108519.     CrossRef
  • Bacterial Communities in Acid Tea Soils Treated for 10 Years with Chemical vs. Integrated Fertilizers
    Limin Wang, Dongfeng Huang, Fei Wang, Qinghua Li, Chunmei He, Cailing Liu, Yibin Huang
    Communications in Soil Science and Plant Analysis.2019; 50(3): 307.     CrossRef
  • Deciphering the bacterial and fungal communities in clubroot-affected cabbage rhizosphere treated with Bacillus Subtilis XF-1
    Chunming Liu, Zhenfu Yang, Pengfei He, Shahzad Munir, Yixin Wu, Honhing Ho, Yueqiu He
    Agriculture, Ecosystems & Environment.2018; 256: 12.     CrossRef
  • Fungal Genetics and Functional Diversity of Microbial Communities in the Soil under Long-Term Monoculture of Maize Using Different Cultivation Techniques
    Anna Gałązka, Jarosław Grządziel
    Frontiers in Microbiology.2018;[Epub]     CrossRef
  • Silage review: Using molecular approaches to define the microbial ecology of silage
    T.A. McAllister, L. Dunière, P. Drouin, S. Xu, Y. Wang, K. Munns, R. Zaheer
    Journal of Dairy Science.2018; 101(5): 4060.     CrossRef
  • Trichoderma improves the growth of Leymus chinensis
    Fengge Zhang, Yunqian Huo, Xixi Xu, Jian Hu, Xiao Sun, Yan Xiao, Yingjun Zhang
    Biology and Fertility of Soils.2018; 54(6): 685.     CrossRef
  • Characterization of fungi from different ecosystems of tropical peat in Sarawak, Malaysia
    Nor Azizah Kusai, Zahidah Ayob, Mohd Shawal Thakib Maidin, Sakinah Safari, Siti Ramlah Ahmad Ali
    Rendiconti Lincei. Scienze Fisiche e Naturali.2018; 29(2): 469.     CrossRef
  • Irrigation water quality and microbial safety of leafy greens in different vegetable production systems: A review
    Mosimanegape Jongman, Lise Korsten
    Food Reviews International.2018; 34(4): 308.     CrossRef
  • Survey of Soil Fungal Communities in Strawberry Fields by Illumina Amplicon Sequencing
    S. M. Mirmajlessi, M. Bahram, M. Mänd, N. Najdabbasi, S. Mansouripour, E. Loit
    Eurasian Soil Science.2018; 51(6): 682.     CrossRef
  • Gut commensal Bacteroides acidifaciens prevents obesity and improves insulin sensitivity in mice
    J-Y Yang, Y-S Lee, Y. Kim, S-H Lee, S. Ryu, S. Fukuda, K. Hase, C-S Yang, H.S. Lim, M-S Kim, H-M Kim, S-H Ahn, B-E Kwon, H-J Ko, M-N Kweon
    Mucosal Immunology.2017; 10(1): 104.     CrossRef
  • Microbial Response to Soil Liming of Damaged Ecosystems Revealed by Pyrosequencing and Phospholipid Fatty Acid Analyses
    Ramya Narendrula-Kotha, Kabwe K. Nkongolo, Newton CM Gomes
    PLOS ONE.2017; 12(1): e0168497.     CrossRef
  • Fungal communities in a Korean red pine stand, Gwangneung Forest, Korea
    Chang Sun Kim, Sang-Kuk Han, Jong Woo Nam, Jong Won Jo, Young-Nam Kwag, Jae-Gu Han, Gi-Ho Sung, Young Woon Lim, Seunghwan Oh
    Journal of Asia-Pacific Biodiversity.2017; 10(4): 559.     CrossRef
  • Changes in the composition and diversity of topsoil bacterial, archaeal and fungal communities after 22 years conventional and no-tillage managements in Northern China
    Wenyi Dong, Enke Liu, Changrong Yan, Hengheng Zhang, Yanqing Zhang
    Archives of Agronomy and Soil Science.2017; 63(10): 1369.     CrossRef
  • Notes for genera: Ascomycota
    Nalin N. Wijayawardene, Kevin D. Hyde, Kunhiraman C. Rajeshkumar, David L. Hawksworth, Hugo Madrid, Paul M. Kirk, Uwe Braun, Rajshree V. Singh, Pedro W. Crous, Martin Kukwa, Robert Lücking, Cletus P. Kurtzman, Andrey Yurkov, Danny Haelewaters, André Aptro
    Fungal Diversity.2017; 86(1): 1.     CrossRef
  • Bacterial biomes and potential human pathogens in irrigation water and leafy greens from different production systems described using pyrosequencing
    M. Jongman, L. Chidamba, L. Korsten
    Journal of Applied Microbiology.2017; 123(4): 1043.     CrossRef
  • Genomic epidemiology of Cryptococcus yeasts identifies adaptation to environmental niches underpinning infection across an African HIV/AIDS cohort
    Mathieu Vanhove, Mathew A. Beale, Johanna Rhodes, Duncan Chanda, Shabir Lakhi, Geoffrey Kwenda, Sile Molloy, Natasha Karunaharan, Neil Stone, Thomas S. Harrison, Tihana Bicanic, Matthew C. Fisher
    Molecular Ecology.2017; 26(7): 1991.     CrossRef
  • Bacterial and fungal core microbiomes associated with small grain silages during ensiling and aerobic spoilage
    Lysiane Duniere, Shanwei Xu, Jin Long, Chijioke Elekwachi, Yuxi Wang, Kelly Turkington, Robert Forster, Tim A. McAllister
    BMC Microbiology.2017;[Epub]     CrossRef
  • Studies on seasonal dynamics of soil-higher fungal communities in Mongolian oak-dominant Gwangneung forest in Korea
    Chang Sun Kim, Jong Woo Nam, Jong Won Jo, Sang-Yong Kim, Jae-Gu Han, Min Woo Hyun, Gi-Ho Sung, Sang-Kuk Han
    Journal of Microbiology.2016; 54(1): 14.     CrossRef
  • Powerful qPCR assays for the early detection of latent invaders: interdisciplinary approaches in clinical cancer research and plant pathology
    Nicola Luchi, Paolo Capretti, Mario Pazzagli, Pamela Pinzani
    Applied Microbiology and Biotechnology.2016; 100(12): 5189.     CrossRef
  • Prevalence of the genus Cladosporium on the integument of leaf-cutting ants characterized by 454 pyrosequencing
    A. P. M. Duarte, M. Ferro, A. Rodrigues, M. Bacci, N. S. Nagamoto, L. C. Forti, F. C. Pagnocca
    Antonie van Leeuwenhoek.2016; 109(9): 1235.     CrossRef
  • Distribution patterns of microbial communities in ultramafic landscape: a metagenetic approach highlights the strong relationships between diversity and environmental traits
    L. Bordez, P. Jourand, M. Ducousso, F. Carriconde, Y. Cavaloc, S. Santini, J. M. Claverie, L. Wantiez, A. Leveau, H. Amir
    Molecular Ecology.2016; 25(10): 2258.     CrossRef
  • The Gut Microbiomes of Two Pachysoma MacLeay Desert Dung Beetle Species (Coleoptera: Scarabaeidae: Scarabaeinae) Feeding on Different Diets
    Philippa Z. N. Franzini, Jean-Baptiste Ramond, Clarke H. Scholtz, Catherine L. Sole, Sandra Ronca, Don A. Cowan, Robert J Forster
    PLOS ONE.2016; 11(8): e0161118.     CrossRef
  • Using environmental (e)DNA sequencing for aquatic biodiversity surveys: a beginner’s guide
    Jennifer L. A. Shaw, Laura Weyrich, Alan Cooper
    Marine and Freshwater Research.2016; 68(1): 20.     CrossRef
  • Use of mulberry–soybean intercropping in salt–alkali soil impacts the diversity of the soil bacterial community
    Xin Li, Minglong Sun, Huihui Zhang, Nan Xu, Guangyu Sun
    Microbial Biotechnology.2016; 9(3): 293.     CrossRef
  • Exploring fungal diversity in deep-sea sediments from Okinawa Trough using high-throughput Illumina sequencing
    Xiao-Yong Zhang, Guang-Hua Wang, Xin-Ya Xu, Xu-Hua Nong, Jie Wang, Muhammad Amin, Shu-Hua Qi
    Deep Sea Research Part I: Oceanographic Research Papers.2016; 116: 99.     CrossRef
  • Trichoderma species occurring on wood with decay symptoms in mountain forests in Central Europe: genetic and enzymatic characterization
    Lidia Błaszczyk, Judyta Strakowska, Jerzy Chełkowski, Agnieszka Gąbka-Buszek, Joanna Kaczmarek
    Journal of Applied Genetics.2016; 57(3): 397.     CrossRef
  • Metabarcoding-based fungal diversity on coarse and fine particulate organic matter in a first-order stream in Nova Scotia, Canada
    Christian Wurzbacher, Ivan J. Grimmett, Felix Bärlocher
    F1000Research.2016; 4: 1378.     CrossRef
  • Metabarcoding-based fungal diversity on coarse and fine particulate organic matter in a first-order stream in Nova Scotia, Canada
    Christian Wurzbacher, Ivan J. Grimmett, Felix Bärlocher
    F1000Research.2015; 4: 1378.     CrossRef
  • Phenotype MicroArrays as a complementary tool to next generation sequencing for characterization of tree endophytes
    Kathrin Blumenstein, David Macaya-Sanz, Juan A. Martín, Benedicte R. Albrectsen, Johanna Witzell
    Frontiers in Microbiology.2015;[Epub]     CrossRef
  • Cucumber Rhizosphere Microbial Community Response to Biocontrol Agent Bacillus subtilis B068150
    Lihua Li, Jincai Ma, A. Ibekwe, Qi Wang, Ching-Hong Yang
    Agriculture.2015; 6(1): 2.     CrossRef
  • Pyrosequencing Reveals Fungal Communities in the Rhizosphere of Xinjiang Jujube
    Peng Liu, Xiao-Hui Wang, Jian-Gui Li, Wei Qin, Cheng-Ze Xiao, Xu Zhao, Hong-Xia Jiang, Jun-Kang Sui, Rong-Bo Sa, Wei-Yan Wang, Xun-Li Liu
    BioMed Research International.2015; 2015: 1.     CrossRef
  • Survey of Annual and Seasonal Fungal Communities in Japanese <i>Prunus mume</i> Orchard Soil by Next-Generation Sequencing
    Yoshinao Aoki, Keiko Fujita, Hiroyuki Shima, Shunji Suzuki
    Advances in Microbiology.2015; 05(13): 817.     CrossRef
  • Characterizing the diversity of active bacteria in soil by comprehensive stable isotope probing of DNA and RNA with H218O
    Elizabeth A. Rettedal, Volker S. Brözel
    MicrobiologyOpen.2015; 4(2): 208.     CrossRef
  • Diversity and distribution of bacterial community in the coastal sediments of Bohai Bay, China
    Liping Wang, Binghui Zheng, Kun Lei
    Acta Oceanologica Sinica.2015; 34(10): 122.     CrossRef
  • Metatranscriptome analysis of fungal strains Penicillium camemberti and Geotrichum candidumreveal cheese matrix breakdown and potential development of sensory properties of ripened Camembert-type cheese
    Marie-Hélène Lessard, Catherine Viel, Brian Boyle, Daniel St-Gelais, Steve Labrie
    BMC Genomics.2014;[Epub]     CrossRef
  • An investigation of the biodiversity of thermophilic and thermotolerant fungal species in composts using culture-based and molecular techniques
    Adrian Langarica-Fuentes, Pauline S. Handley, Ashley Houlden, Graeme Fox, Geoffrey D. Robson
    Fungal Ecology.2014; 11: 132.     CrossRef
  • The significance of cellulolytic enzymes produced by Trichoderma in opportunistic lifestyle of this fungus
    Judyta Strakowska, Lidia Błaszczyk, Jerzy Chełkowski
    Journal of Basic Microbiology.2014;[Epub]     CrossRef
  • Variation in forest soil fungal diversity along a latitudinal gradient
    Ling-Ling Shi, Peter E. Mortimer, J. W. Ferry Slik, Xiao-Ming Zou, Jianchu Xu, Wen-Ting Feng, Lu Qiao
    Fungal Diversity.2014; 64(1): 305.     CrossRef
  • A next-generation sequencing approach to river biomonitoring using benthic diatoms
    Lenaïg Kermarrec, Alain Franc, Frédéric Rimet, Philippe Chaumeil, Jean-Marc Frigerio, Jean-François Humbert, Agnès Bouchez
    Freshwater Science.2014; 33(1): 349.     CrossRef
  • Fungal Community Responses to Past and Future Atmospheric CO 2 Differ by Soil Type
    Andrew C. Procter, J. Christopher Ellis, Philip A. Fay, H. Wayne Polley, Robert B. Jackson, D. Cullen
    Applied and Environmental Microbiology.2014; 80(23): 7364.     CrossRef
  • Eukaryotic microbial communities in hypersaline soils and sediments from the alkaline hypersaline Huama Lake as revealed by 454 pyrosequencing
    Kaihui Liu, Xiaowei Ding, Hong-Fei Wang, Xiaomei Zhang, Wael N. Hozzein, Mohammed A. M. Wadaan, Afeng Lan, Bo Zhang, Wenjun Li
    Antonie van Leeuwenhoek.2014; 105(5): 871.     CrossRef
  • Study on the effects of near-future ocean acidification on marine yeasts: a microcosm approach
    Evamaria Krause, Antje Wichels, René Erler, Gunnar Gerdts
    Helgoland Marine Research.2013; 67(4): 607.     CrossRef
  • Effects on Diversity of Soil Fungal Community and Fate of an Artificially Applied Beauveria bassiana Strain Assessed Through 454 Pyrosequencing
    Jacqueline Hirsch, Sandhya Galidevara, Stephan Strohmeier, K. Uma Devi, Annette Reineke
    Microbial Ecology.2013; 66(3): 608.     CrossRef
  • Combining high-throughput sequencing with fruit body surveys reveals contrasting life-history strategies in fungi
    Otso Ovaskainen, Dmitry Schigel, Heini Ali-Kovero, Petri Auvinen, Lars Paulin, Björn Nordén, Jenni Nordén
    The ISME Journal.2013; 7(9): 1696.     CrossRef
  • Tracking Fungal Community Responses to Maize Plants by DNA- and RNA-Based Pyrosequencing
    Eiko E. Kuramae, Erik Verbruggen, Remy Hillekens, Mattias de Hollander, Wilfred F. M. Röling, Marcel G. A. van der Heijden, George A. Kowalchuk, Mari Moora
    PLoS ONE.2013; 8(7): e69973.     CrossRef
  • Structural and functional variation in soil fungal communities associated with litter bags containing maize leaf
    Eiko E. Kuramae, Remy H.E. Hillekens, Mattias de Hollander, Marcel G. A. van der Heijden, Marlies van den Berg, Nico M. van Straalen, George A. Kowalchuk
    FEMS Microbiology Ecology.2013; 84(3): 519.     CrossRef
  • 454 Pyrosequencing Analysis of Fungal Assemblages from Geographically Distant, Disparate Soils Reveals Spatial Patterning and a Core Mycobiome
    Alberto Orgiazzi, Valeria Bianciotto, Paola Bonfante, Stefania Daghino, Stefano Ghignone, Alexandra Lazzari, Erica Lumini, Antonietta Mello, Chiara Napoli, Silvia Perotto, Alfredo Vizzini, Simonetta Bagella, Claude Murat, Mariangela Girlanda
    Diversity.2013; 5(1): 73.     CrossRef
  • Diversity of microorganisms from forest soils differently polluted with heavy metals
    Marcin Chodak, Marcin Gołębiewski, Justyna Morawska-Płoskonka, Katarzyna Kuduk, Maria Niklińska
    Applied Soil Ecology.2013; 64: 7.     CrossRef
  • Hypholoma lateritiumisolated from coarse woody debris, the forest floor, and mineral soil in a deciduous forest in New Hampshire
    Therese A. Thompson, R. Greg Thorn, Kevin T. Smith
    Botany.2012; 90(6): 457.     CrossRef
  • Next‐generation sequencing technologies for environmental DNA research
    SHADI SHOKRALLA, JENNIFER L. SPALL, JOEL F. GIBSON, MEHRDAD HAJIBABAEI
    Molecular Ecology.2012; 21(8): 1794.     CrossRef
  • Coarse woody debris retention in subalpine clearcuts affects ectomycorrhizal root tip community structure within fifteen years of harvest
    J.K.M. Walker, V. Ward, C. Paterson, Melanie D. Jones
    Applied Soil Ecology.2012; 60: 5.     CrossRef
  • A molecular method to assess Phytophthora diversity in environmental samples
    Silvia Scibetta, Leonardo Schena, Antonio Chimento, Santa O. Cacciola, David E.L. Cooke
    Journal of Microbiological Methods.2012; 88(3): 356.     CrossRef
  • Molecular approaches for AM fungal community ecology: A primer
    Monika A. Gorzelak, Taylor C. Holland, Xiaoke Xing, Miranda M. Hart
    Journal of Microbiological Methods.2012; 90(2): 108.     CrossRef
  • Pyrosequencing as a tool for the detection ofPhytophthoraspecies: error rate and risk of false Molecular Operational Taxonomic Units
    A.M. Vettraino, P. Bonants, A. Tomassini, N. Bruni, A. Vannini
    Letters in Applied Microbiology.2012; 55(5): 390.     CrossRef
  • Quantitative methods for the analysis of zoosporic fungi
    Agostina V. Marano, Frank H. Gleason, Felix Bärlocher, Carmen L.A. Pires-Zottarelli, Osu Lilje, Steve K. Schmidt, Serena Rasconi, Maiko Kagami, Marcelo D. Barrera, Télesphore Sime-Ngando, Sammy Boussiba, José I. de Souza, Joan E. Edwards
    Journal of Microbiological Methods.2012; 89(1): 22.     CrossRef
  • Zoosporic true fungi and heterotrophic straminipiles assemblages from soil of Brazilian Cerrado areas
    Cristiane de A. Nascimento, Eduardo P.C. Gomes, José I. de Souza, Carmen Lidia A. Pires-Zottarelli
    Fungal Ecology.2012; 5(2): 114.     CrossRef
  • Application of bio-organic fertilizer can control Fusarium wilt of cucumber plants by regulating microbial community of rhizosphere soil
    Meihua Qiu, Ruifu Zhang, Chao Xue, Shusheng Zhang, Shuqing Li, Nan Zhang, Qirong Shen
    Biology and Fertility of Soils.2012; 48(7): 807.     CrossRef
  • Species Accumulation Curves and Incidence-Based Species Richness Estimators to Appraise the Diversity of Cultivable Yeasts from Beech Forest Soils
    Andrey M. Yurkov, Martin Kemler, Dominik Begerow, Jürg Bähler
    PLoS ONE.2011; 6(8): e23671.     CrossRef
  • Functional diversity of terrestrial microbial decomposers and their substrates
    Stephan Hättenschwiler, Nathalie Fromin, Sandra Barantal
    Comptes Rendus. Biologies.2011; 334(5-6): 393.     CrossRef
  • Cite this Article
    Cite this Article
    export Copy Download
    Close
    Download Citation
    Download a citation file in RIS format that can be imported by all major citation management software, including EndNote, ProCite, RefWorks, and Reference Manager.

    Format:
    • RIS — For EndNote, ProCite, RefWorks, and most other reference management software
    • BibTeX — For JabRef, BibDesk, and other BibTeX-specific software
    Include:
    • Citation for the content below
    Assessment of Soil Fungal Communities Using Pyrosequencing
    J. Microbiol. 2010;48(3):284-289.   Published online June 23, 2010
    Close
Related articles

Journal of Microbiology : Journal of Microbiology
TOP