Abstract
We investigated the influence of host species on intestinal
microbiota by comparing the gut bacterial community structure
of four cohabitating freshwater fish larvae, silver carp,
grass carp, bighead carp, and blunt snout bream, using denaturing
gradient gel electrophoresis (DGGE) of the amplified
16S and 18S rRNA genes. Similarity clustering indicated
that the intestinal microbiota derived from these four fish
species could be divided into four groups based on 16S
rRNA gene similarity, whereas the eukaryotic 18S rRNA
genes showed no distinct groups. The water sample from the
shared environment contained microbiota of an independent
group as indicated by both 16S and 18S rRNA genes segments.
The bacterial community structures were visualized using
rank-abundance plots fitted with linear regression models.
Results
showed that the intestinal bacterial evenness was
significantly different between species (P<0.05) and between
species and the water sample (P<0.01). Thirty-five relatively
dominant bands in DGGE patterns were sequenced and
grouped into five major taxa: Proteobacteria (26), Actinobacteria
(5), Bacteroidetes (1), Firmicutes (2), and Cyanobacterial
(1). Six eukaryotes were detected by sequencing 18S rRNA
genes segments. The present study suggests that the intestines
of the four fish larvae, although reared in the same environment,
contained distinct bacterial populations, while intestinal
eukaryotic microorganisms were almost identical.
Citations
Citations to this article as recorded by

- Comparative metagenomics of tropical reef fishes show conserved core gut functions across hosts and diets with diet-related functional gene enrichments
Derek G. Wu, Cassandra R. Harris, Katie M. Kalis, Malique Bowen, Jennifer F. Biddle, Ibrahim F. Farag, Knut Rudi
Applied and Environmental Microbiology.2025;[Epub] CrossRef - Gut Microbial Composition of Cyprinella lutrensis (Red Shiner) and Notropis stramineus (Sand Shiner): Insights from Wild Fish Populations
Krista Starr, Federica Montesanto, Esther Perisho, Nirosh Aluthge, Mark Pegg, Samodha C. Fernando
Microbial Ecology.2024;[Epub] CrossRef - Ginger polysaccharide alleviates the effects of acute exposure to carbonate in crucian carp (Carassius auratus) by regulating immunity, intestinal microbiota, and intestinal metabolism
Xianwei Meng, Liang Luo, Zhigang Zhao, Shihui Wang, Rui Zhang, Kun Guo
Ecotoxicology and Environmental Safety.2024; 273: 116127. CrossRef - Identification of the regulatory roles of water qualities on the spatio-temporal dynamics of microbiota communities in the water and fish guts in the Heilongjiang River
Hongyu Jin, Lei Li, Wanqiao Lu, Zepeng Zhang, Yue Xing, Di Wu
Frontiers in Microbiology.2024;[Epub] CrossRef - Microbiomes of Tilapia Culture Systems: Composition, Affecting Factors, and Future Perspectives
Jonabel Huavas, Jasmine Heyse, Ruben Props, Jérôme Delamare-Deboutteville, Colin Shelley, Christyn Bailey
Aquaculture Research.2024;[Epub] CrossRef - Regulation of lipid metabolism by gut microbiota in aquatic animals
Shangong Wu, Meijing Pan, Ziye Zan, Ivan Jakovlić, Weishan Zhao, Hong Zou, Einar Ringø, Guitang Wang
Reviews in Aquaculture.2024; 16(1): 34. CrossRef - High-altitude Adaptation of Xizang Plateau Frogs, <italic>Nanorana parkeri</italic> from a Perspective of the Gut Microbiome
Xuejing ZHANG, Yonggang NIU, Shengkang MEN, Xiaolong TANG, Kenneth B. STOREY, Qiang CHEN
Asian Herpetological Research.2024; 15(4): 214. CrossRef - Effects of salinity stress on the growth performance, health status, and intestinal microbiota of juvenile Micropterus salmoides
Shukui Sun, Cuiping Gong, Chaoyue Deng, Haoran Yu, Da Zheng, Lei Wang, Junlong Sun, Feibiao Song, Jian Luo
Aquaculture.2023; 576: 739888. CrossRef - Responses of the gastrointestinal microbiota to the protein metabolism of pond-cultured Japanese flounder (Paralichthys olivaceus)
Yan Jiang, Jun Wang, Lin Lin, Yongjiang Xu, Aijun Cui, Kaijie Wang, Xuezhou Liu, Bin Wang
Frontiers in Marine Science.2023;[Epub] CrossRef - Effects of plant-based proteins and handling stress on intestinal mucus microbiota in rainbow trout
Marvin Suhr, Finn-Thorbjörn Fichtner-Grabowski, Henrike Seibel, Corinna Bang, Andre Franke, Carsten Schulz, Stéphanie C. Hornburg
Scientific Reports.2023;[Epub] CrossRef - Gut microbiota, host genetics and phenotypes in aquatic animals: A review
Quanxin Gao, Peimin Liu, Yang Li, Dawei Song, Wei Long, Zefeng Wang, Shaokui Yi, Linhua Jiang
Aquaculture Reports.2023; 31: 101648. CrossRef - Povidone iodine exposure alters the immune response and microbiota of the gill and skin in koi carp, Cyprinus carpio
R. Zhang, G.T. Wu, J.Y. Zhu, X.W. Wang, L.L. Liu, H.J. Li, H. Zhu
Aquaculture.2023; 563: 738926. CrossRef - Gut microbiota of an Amazonian fish in a heterogeneous riverscape: integrating genotype, environment, and parasitic infections
Nicolas Leroux, Francois-Etienne Sylvain, Aleicia Holland, Adalberto Luis Val, Nicolas Derome, John M. Chaston, Mikhail Solovyev
Microbiology Spectrum.2023;[Epub] CrossRef - Trophic level and proteobacteria abundance drive antibiotic resistance levels in fish from coastal New England
Benjamin J. Korry, Peter Belenky
Animal Microbiome.2023;[Epub] CrossRef - Gut microbiota changes in Hexagrammos otakii during development and association with diets based on metagenomics sequencing
Ying Fan, Youhong Wang, Li Li, Xiaolu Wang, Xiaoqing Yu, La Xu, Shuxian Wang, Fawen Hu, Chunlei Gai, Jing Diao, Haibin Ye, Fusheng Hou, Xintian Liu
Aquaculture Reports.2023; 33: 101881. CrossRef - Partial Substitution of Fish Meal with Soy Protein Concentrate on Growth, Liver Health, Intestinal Morphology, and Microbiota in Juvenile Large Yellow Croaker (Larimichthys crocea)
Xuexi Wang, Hongjie Luo, Dejuan Wang, Yunzong Zheng, Wenbo Zhu, Weini Zhang, Zhengbang Chen, Xinhua Chen, Jianchun Shao, Yanjiao Zhang
Aquaculture Nutrition.2023; 2023: 1. CrossRef - Characterization of Host-Associated Microbiota and Isolation of Antagonistic Bacteria from Greater Amberjack (Seriola dumerili, Risso, 1810) Larvae
Vasiliki Paralika, Fotini Kokou, Stelios Karapanagiotis, Pavlos Makridis
Microorganisms.2023; 11(8): 1889. CrossRef - The Active Microbiota of the Eggs and the Nauplii of the Pacific Blue Shrimp Litopenaeus stylirostris Partially Shaped by a Potential Vertical Transmission
Carolane Giraud, Nolwenn Callac, Viviane Boulo, Jean-Sébastien Lam, Dominique Pham, Nazha Selmaoui-Folcher, Nelly Wabete
Frontiers in Microbiology.2022;[Epub] CrossRef - Supplementing artemisinin positively influences growth, antioxidant capacity, immune response, gut health and disease resistance against Vibrio parahaemolyticus in Litopenaeus vannamei fed cottonseed protein concentrate meal diets
Hongyu Liu, Guofeng Chen, Lixian Li, Zhixuan Lin, Beiping Tan, Xiaohui Dong, Qihui Yang, Shuyan Chi, Shuang Zhang, Xiaoqiu Zhou
Fish & Shellfish Immunology.2022; 131: 105. CrossRef - Does Exposure of Broodstock to Dietary Soybean Meal Affect Its Utilization in the Offspring of Zebrafish (Danio rerio)?
Karolina Kwasek, Samuel Patula, Michal Wojno, Frank Oliaro, Chrissy Cabay, Lee J. Pinnell
Animals.2022; 12(12): 1475. CrossRef - Characterization and Dynamics of the Gut Microbiota in Rice Fishes at Different Developmental Stages in Rice-Fish Coculture Systems
Ling Tao, Jie Chai, Hongyi Liu, Wenhao Huang, Yan Zou, Mengling Wu, Buqing Peng, Qiong Wang, Keyi Tang
Microorganisms.2022; 10(12): 2373. CrossRef - Dietary supplementation with microalgae enhances the zebrafish growth performance by modulating immune status and gut microbiota
Ke Ma, Siwei Chen, Yue Wu, Yiting Ma, Haochen Qiao, Jianhua Fan, Haizhen Wu
Applied Microbiology and Biotechnology.2022; 106(2): 773. CrossRef - Potential Role of Gastrointestinal Microbiota in Growth Regulation of Yellowtail Kingfish Seriola lalandi in Different Stocking Densities
Yan Jiang, Chaoyong Yu, Yongjiang Xu, Xuezhou Liu, Aijun Cui, Bin Wang, Heting Zhou
Fishes.2022; 7(4): 154. CrossRef - Starvation and refeeding influence the growth, biochemical index, intestinal microbiota, and transcriptomic profiles of golden pompano Trachinotus ovatus (Linnaeus 1758)
Bo Liu, Hua-Yang Guo, Bao-Suo Liu, Nan Zhang, Jing-Wen Yang, Liang Guo, Shi-Gui Jiang, Dian-Chang Zhang
Frontiers in Marine Science.2022;[Epub] CrossRef - Comparative analysis of the gut microbiota in bighead carp under different culture patterns
Mingkun Luo, Rui An, Jianjun Fu, Shunpeng Wan, Wenbin Zhu, Lanmei Wang, Zaijie Dong
Journal of Applied Microbiology.2022; 132(2): 1357. CrossRef - Northern pike (Esox lucius) young‐of‐year gut microbiota and associations with wetland nursery water microbial communities in the St. Lawrence River
Benjamin D. Gallo, John M. Farrell, Brian F. Leydet
Aquaculture, Fish and Fisheries.2022; 2(5): 384. CrossRef - Gut microbiota differs between two cold-climate lizards distributed in thermally different regions
Jun-Qiong Chen, Lu-Wen Zhang, Ru-Meng Zhao, Hai-Xia Wu, Long-Hui Lin, Peng Li, Hong Li, Yan-Fu Qu, Xiang Ji
BMC Ecology and Evolution.2022;[Epub] CrossRef - Bacteriome Structure, Function, and Probiotics in Fish Larviculture: The Good, the Bad, and the Gaps
Nuno Borges, Tina Keller-Costa, Gracinda M.M. Sanches-Fernandes, António Louvado, Newton C.M. Gomes, Rodrigo Costa
Annual Review of Animal Biosciences.2021; 9(1): 423. CrossRef - Comparative analysis of bacterial communities of water and intestines of silver carp (Hypophthalmichthys molitrix) and bighead carp (H. nobilis) reared in aquaculture pond systems
Liu-Jiang Meng, Yuan Zhang, Xin-Xin Li, Jun-Heng Liu, Bin Wen, Jian-Zhong Gao, Zai-Zhong Chen
Aquaculture.2021; 534: 736334. CrossRef - Food intake and its effect on the species and abundance of intestinal flora in colorectal cancer and healthy individuals
Weitao Shen, Jiayu Sun, Zhiyang Li, Fen Yao, Kaihuang Lin, Xiaoyang Jiao
The Korean Journal of Internal Medicine.2021; 36(3): 568. CrossRef - Opportunities for microbiome research to enhance farmed freshwater fish quality and production
Lara Parata, Jesmond Sammut, Suhelen Egan
Reviews in Aquaculture.2021; 13(4): 2027. CrossRef - A systematic review of advances in intestinal microflora of fish
Chang Liu, Li-Ping Zhao, Yan-Qin Shen
Fish Physiology and Biochemistry.2021; 47(6): 2041. CrossRef - Gut Microbiota of Five Sympatrically Farmed Marine Fish Species in the Aegean Sea
Eleni Nikouli, Alexandra Meziti, Evangelia Smeti, Efthimia Antonopoulou, Eleni Mente, Konstantinos Ar. Kormas
Microbial Ecology.2021; 81(2): 460. CrossRef - Physiological parameters and gut microbiome associated with different dietary lipid levels in hybrid yellow catfish (Tachysurus fulvidraco♀× Pseudobagrus vachellii♂)
Haojun Zhu, Jun Qiang, Jie He, Yifan Tao, Jingwen Bao, Pao Xu
Comparative Biochemistry and Physiology Part D: Genomics and Proteomics.2021; 37: 100777. CrossRef - Host development overwhelms environmental dispersal in governing the ecological succession of zebrafish gut microbiota
Fanshu Xiao, Wengen Zhu, Yuhe Yu, Zhili He, Bo Wu, Cheng Wang, Longfei Shu, Xinghao Li, Huaqun Yin, Jianjun Wang, Philippe Juneau, Xiafei Zheng, Yongjie Wu, Juan Li, Xiaojuan Chen, Dongwei Hou, Zhijian Huang, Jianguo He, Guohuan Xu, Liwei Xie, Jie Huang,
npj Biofilms and Microbiomes.2021;[Epub] CrossRef - NextGen molecular barcoding of larval grouper diet in an extensive green-water pond system
Lachlan Peter Dennis, Kelli Anderson, Matthew Wylie, Vu Van In, Josephine Nocillado, Abigail Elizur
Aquaculture.2021; 531: 735971. CrossRef - Veteriner Sahada Güncel Mikrobiyota Kavramı
Emre KÜLLÜK, Duygu DALGIN
Etlik Veteriner Mikrobiyoloji Dergisi.2021; 32(1): 77. CrossRef - Dynamic changes in microbial community structure in farming pond water and their effect on the intestinal microbial community profile in juvenile common carp (Cyprinus carpio L.)
Xiaojun Jing, Shengyan Su, Chengfeng Zhang, Jian Zhu, Yiran Hou, Zhixun Li, Xingli Yang, Xiaolin Zhou, Xugang He, Brian Pelekelo Munganga, Yongkai Tang, Pao Xu
Genomics.2021; 113(4): 2547. CrossRef - Co-modulation of Liver Genes and Intestinal Microbiome of Largemouth Bass Larvae (Micropterus salmoides) During Weaning
Liulan Zhao, Kuo He, Jie Luo, Junlong Sun, Lei Liao, Xiaohong Tang, Qiao Liu, Song Yang
Frontiers in Microbiology.2020;[Epub] CrossRef - Use of next generation sequencing to compare simple habitat and species level differences in the gut microbiota of an invasive and native freshwater fish species
Benjamin D. Gallo, John M. Farrell, Brian Leydet
PeerJ.2020; 8: e10237. CrossRef - Host-derived Probiotics for Finfish Aquaculture
C M A Caipang, I Suharman, A L Avillanosa, V T Bargoyo
IOP Conference Series: Earth and Environmental Science.2020; 430(1): 012026. CrossRef - Physiological and gut microbiome changes associated with low dietary protein level in genetically improved farmed tilapia (GIFT,Oreochromis niloticus) determined by 16S rRNA sequence analysis
Hao‐jun Zhu, Jun Qiang, Yi‐fan Tao, Tlou Kevin Ngoepe, Jing‐wen Bao, De‐ju Chen, Pao Xu
MicrobiologyOpen.2020;[Epub] CrossRef - Variations and Potential Factors of Gut Prokaryotic Microbiome During Spawning Migration in Coilia nasus
Cong-ping Ying, Min Jiang, Lei You, Jin-hao Tan, Yan-ping Yang, Yin-ping Wang, Kai Liu
Current Microbiology.2020; 77(10): 2802. CrossRef - Fish Gut Microbiome: A Primer to an Emerging Discipline in the Fisheries Sciences
Benjamin D Gallo, John M Farrell, Brian F Leydet
Fisheries.2020; 45(5): 271. CrossRef - Differences in the gut microbiota between Cercopithecinae and Colobinae in captivity
Zongjin Huan, Yongfang Yao, Jianqiu Yu, Hongwei Chen, Meirong Li, Chaojun Yang, Bo Zhao, Qingyong Ni, Mingwang Zhang, Meng Xie, Huailiang Xu
Journal of Microbiology.2020; 58(5): 367. CrossRef - Comparative analysis of gut microbiota diversity in endangered, economical, and common freshwater mussels using 16S rRNA gene sequencing
Xiongjun Liu, Yanling Cao, Shan Ouyang, Xiaoping Wu
Ecology and Evolution.2020; 10(21): 12015. CrossRef - Microbiota characteristics in Sebastes schlegelii intestine in early life stages
Yan Jiang, Xuezhou Liu, Yongjiang Xu, Bao Shi, Bin Wang
Journal of Oceanology and Limnology.2020; 38(1): 275. CrossRef - Intestinal microbial profiling of grass carp (Ctenopharyngodon idellus) challenged with Aeromonas hydrophila
Lei Zhou, Jian-fu Wei, Ke-tao Lin, Lian Gan, Jun-jie Wang, Ji-jia Sun, Xiao-peng Xu, Li Liu, Xian-de Huang
Aquaculture.2020; 524: 735292. CrossRef - Metagenomic Shotgun Analyses Reveal Complex Patterns of Intra- and Interspecific Variation in the Intestinal Microbiomes of Codfishes
Even Sannes Riiser, Thomas H. A. Haverkamp, Srinidhi Varadharajan, Ørnulf Borgan, Kjetill S. Jakobsen, Sissel Jentoft, Bastiaan Star, Christopher A. Elkins
Applied and Environmental Microbiology.2020;[Epub] CrossRef - Spatiotemporal successions of shrimp gut microbial colonization: high consistency despite distinct species pool
Jinbo Xiong, Lixia Xuan, Weina Yu, Jinyong Zhu, Qiongfen Qiu, Jiong Chen
Environmental Microbiology.2019; 21(4): 1383. CrossRef - Intestinal microbiota of salmonids and its changes upon introduction of soy proteins to fish feed
Svetlana V. Kononova, Dmitry V. Zinchenko, Tatyana A. Muranova, Nataliya A. Belova, Anatoly I. Miroshnikov
Aquaculture International.2019; 27(2): 475. CrossRef - Shotgun metagenomics offers novel insights into taxonomic compositions, metabolic pathways and antibiotic resistance genes in fish gut microbiome
Anuj Tyagi, Balwinder Singh, Naveen K. Billekallu Thammegowda, Niraj K. Singh
Archives of Microbiology.2019; 201(3): 295. CrossRef - Host selectively contributes to shaping intestinal microbiota of carnivorous and omnivorous fish
Kristian Daly, Jennifer Kelly, Andrew W. Moran, Robert Bristow, Iain S. Young, Andrew R. Cossins, David Bravo, Soraya P. Shirazi-Beechey
The Journal of General and Applied Microbiology.2019; 65(3): 129. CrossRef - Succession of embryonic and the intestinal bacterial communities of Atlantic salmon (Salmo salar) reveals stage‐specific microbial signatures
Jep Lokesh, Viswanath Kiron, Detmer Sipkema, Jorge M.O. Fernandes, Truls Moum
MicrobiologyOpen.2019;[Epub] CrossRef - Gut Microbiota and Energy Homeostasis in Fish
Robyn Lisa Butt, Helene Volkoff
Frontiers in Endocrinology.2019;[Epub] CrossRef - Algae and Clay Water Additives Differentially Impact Survival and Microbial Community Structure in Sablefish (Anoplopoma fimbria) Rearing Tanks
Melissa L. Pierce, Jonathan S. F. Lee, Emily Dodd, Rachel S. Poretsky
Frontiers in Marine Science.2019;[Epub] CrossRef - The effect of diet on the structure of gut bacterial community of sympatric pair of whitefishes (Coregonus lavaretus): one story more
Mikhail M. Solovyev, Elena N. Kashinskaya, Nickolai A. Bochkarev, Karl B. Andree, Evgeniy Simonov
PeerJ.2019; 7: e8005. CrossRef - Comparison of the gut microbiota of Rana amurensis and Rana dybowskii under natural winter fasting conditions
Qing Tong, Xiao-peng Du, Zong-fu Hu, Li-yong Cui, Jia Bie, Qian-zhen Zhang, Jian-hua Xiao, Yu Lin, Hong-bin Wang
FEMS Microbiology Letters.2019;[Epub] CrossRef - Screening of intestinal peristalsis-promoting probiotics based on a zebrafish model
Youyou Lu, Junxue Zhang, Huaxi Yi, Zhe Zhang, Lanwei Zhang
Food & Function.2019; 10(4): 2075. CrossRef - Reduced fishmeal allowance with constant protein input for juvenile channel catfish Ictalurus punctatus
Guang-Zhen Jiang, Zhuo-Qin Li, Hong-Yan Tian, Er-Teng Jia, Chao Xu, Wen-Bin Liu
Aquaculture Nutrition.2019; 25(1): 154. CrossRef - Intestinal Microbiota in Large Yellow Croaker, Larimichthys crocea, at Different Ages
Na Wei, Chengcheng Wang, Shijun Xiao, Weiqing Huang, Mao Lin, Qingpi Yan, Ying Ma
Journal of the World Aquaculture Society.2018; 49(1): 256. CrossRef - Assessment of gut microbiota in different developmental stages of Malaysian Mahseer (Tor tambroides)
Mohamad Zaimin Mohd Nosi, Sharifah Noor Emilia Syed Jamil Fadaak, Muhd Danish Daniel Muhammad, Shumpei Iehata
Aquaculture Research.2018; 49(9): 2977. CrossRef - Comparison of Channel Catfish and Blue Catfish Gut Microbiota Assemblages Shows Minimal Effects of Host Genetics on Microbial Structure and Inferred Function
Jacob W. Bledsoe, Geoffrey C. Waldbieser, Kelly S. Swanson, Brian C. Peterson, Brian C. Small
Frontiers in Microbiology.2018;[Epub] CrossRef - Characterization of the gut microbiota in early life stages of pikeperch Sander lucioperca
T. Dulski, Z. Zakęś, S. Ciesielski
Journal of Fish Biology.2018; 92(1): 94. CrossRef - Thermal processing of food reduces gut microbiota diversity of the host and triggers adaptation of the microbiota: evidence from two vertebrates
Zhimin Zhang, Dapeng Li
Microbiome.2018;[Epub] CrossRef - Fish Gut Microbiome: Current Approaches and Future Perspectives
Chandni Talwar, Shekhar Nagar, Rup Lal, Ram Krishan Negi
Indian Journal of Microbiology.2018; 58(4): 397. CrossRef - Progress in fish gastrointestinal microbiota research
An R. Wang, Chao Ran, Einar Ringø, Zhi G. Zhou
Reviews in Aquaculture.2018; 10(3): 626. CrossRef - Intestinal microbiome and its potential functions in bighead carp (Aristichthys nobilis) under different feeding strategies
Xuemei Li, Yongjiu Zhu, Einar Ringø, Xuge Wang, Jinling Gong, Deguo Yang
PeerJ.2018; 6: e6000. CrossRef - The variation profile of intestinal microbiota in blunt snout bream (Megalobrama amblycephala) during feeding habit transition
Jin Wei, Xianwu Guo, Han Liu, Yuanyuan Chen, Weimin Wang
BMC Microbiology.2018;[Epub] CrossRef - Comparative analysis on microbial community associated with different gastrointestinal regions of wild northern snakehead Channa argus Cantor, 1842
Shuyan Miao, Chenze Zhao, Jinyu Zhu, Mingzhu Pan
Journal of Oceanology and Limnology.2018; 36(2): 450. CrossRef - How Can We Define “Optimal Microbiota?”: A Comparative Review of Structure and Functions of Microbiota of Animals, Fish, and Plants in Agriculture
Wakako Ikeda-Ohtsubo, Sylvia Brugman, Craig H. Warden, Johanna M. J. Rebel, Gert Folkerts, Corné M. J. Pieterse
Frontiers in Nutrition.2018;[Epub] CrossRef - Intestinal microbiota of healthy and unhealthy Atlantic salmon Salmo salar L. in a recirculating aquaculture system
Chun Wang, Guoxiang Sun, Shuangshuang Li, Xian Li, Ying Liu
Journal of Oceanology and Limnology.2018; 36(2): 414. CrossRef - Age-Related Variations in Intestinal Microflora of Free-Range and Caged Hens
Yizhe Cui, Qiuju Wang, Shengjun Liu, Rui Sun, Yaqiang Zhou, Yue Li
Frontiers in Microbiology.2017;[Epub] CrossRef - Changes in the gut microbiome of the Chinese mitten crab (Eriocheir sinensis) in response to White spot syndrome virus (WSSV) infection
Z F Ding, M J Cao, X S Zhu, G H Xu, R L Wang
Journal of Fish Diseases.2017; 40(11): 1561. CrossRef - Comparative profiling of microbial community of three economically important fishes reared in sea cages under tropical offshore environment
M.K. Rasheeda, Vijaya Raghavan Rangamaran, Senthilkumar Srinivasan, Sendhil Kumar Ramaiah, Rajaprabhu Gunasekaran, Santhanakumar Jaypal, Dharani Gopal, Kirubagaran Ramalingam
Marine Genomics.2017; 34: 57. CrossRef - High Spatial and Temporal Variations of Microbial Community along the Southern Catfish Gastrointestinal Tract: Insights into Dynamic Food Digestion
Zhimin Zhang, Dapeng Li, Mohamed M. Refaey, Weitong Xu
Frontiers in Microbiology.2017;[Epub] CrossRef - Habitat and indigenous gut microbes contribute to the plasticity of gut microbiome in oriental river prawn during rapid environmental change
Cheng-Yu Chen, Po-Cheng Chen, Francis Cheng-Hsuan Weng, Grace Tzun-Wen Shaw, Daryi Wang, Sanjay B Jadhao
PLOS ONE.2017; 12(7): e0181427. CrossRef - Multi-Omics Analysis Reveals a Correlation between the Host Phylogeny, Gut Microbiota and Metabolite Profiles in Cyprinid Fishes
Tongtong Li, Meng Long, Huan Li, François-Joël Gatesoupe, Xujie Zhang, Qianqian Zhang, Dongyue Feng, Aihua Li
Frontiers in Microbiology.2017;[Epub] CrossRef - Coupling metagenomics with cultivation to select host-specific probiotic micro-organisms for subtropical aquaculture
J. Cui, M. Xiao, M. Liu, Z. Wang, F. Liu, L. Guo, H. Meng, H. Zhang, J. Yang, D. Deng, S. Huang, Y. Ma, C. Liu
Journal of Applied Microbiology.2017; 123(5): 1274. CrossRef - Composition of Gut Microbiota in the Gibel Carp (Carassius auratus gibelio) Varies with Host Development
Xinghao Li, Li Zhou, Yuhe Yu, Jiajia Ni, Wenjie Xu, Qingyun Yan
Microbial Ecology.2017; 74(1): 239. CrossRef - DNA extraction protocols may influence biodiversity detected in the intestinal microbiome: a case study from wild Prussian carp,Carassius gibelio
Elena N. Kashinskaya, Karl B. Andree, Evgeniy P. Simonov, Mikhail M. Solovyev, Julian Marchesi
FEMS Microbiology Ecology.2017; 93(2): fiw240. CrossRef - A review of intestinal microbes in grass carpCtenopharyngodon idellus(Valenciennes)
Ngoc Tuan Tran, Gui-Tang Wang, Shan-Gong Wu
Aquaculture Research.2017; 48(7): 3287. CrossRef - Standardizing the microbiota of fish used in research
I N Vatsos
Laboratory Animals.2017; 51(4): 353. CrossRef - The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels
Han Liu, Xianwu Guo, Ravi Gooneratne, Ruifang Lai, Cong Zeng, Fanbin Zhan, Weimin Wang
Scientific Reports.2016;[Epub] CrossRef - Effects of host genetics and environment on egg‐associated microbiotas in brown trout (Salmo trutta)
Laetitia G. E. Wilkins, Luca Fumagalli, Claus Wedekind
Molecular Ecology.2016; 25(19): 4930. CrossRef - Ontogenetic Characterization of the Intestinal Microbiota of Channel Catfish through 16S rRNA Gene Sequencing Reveals Insights on Temporal Shifts and the Influence of Environmental Microbes
Jacob W. Bledsoe, Brian C. Peterson, Kelly S. Swanson, Brian C. Small, John F. Rawls
PLOS ONE.2016; 11(11): e0166379. CrossRef - The influence of weight and gender on intestinal bacterial community of wild largemouth bronze gudgeon (Coreius guichenoti, 1874)
Xuemei Li, Qingyun Yan, Einar Ringø, Xingbing Wu, Yongfeng He, Deguo Yang
BMC Microbiology.2016;[Epub] CrossRef - Environmental filtering decreases with fish development for the assembly of gut microbiota
Qingyun Yan, Jinjin Li, Yuhe Yu, Jianjun Wang, Zhili He, Joy D. Van Nostrand, Megan L. Kempher, Liyou Wu, Yaping Wang, Lanjie Liao, Xinghao Li, Shu Wu, Jiajia Ni, Chun Wang, Jizhong Zhou
Environmental Microbiology.2016; 18(12): 4739. CrossRef - A new view of the fish gut microbiome: Advances from next-generation sequencing
Mahdi Ghanbari, Wolfgang Kneifel, Konrad J. Domig
Aquaculture.2015; 448: 464. CrossRef - Analysis of Rhizosphere Soil Bacterial Communities on Seonginbong, Ulleungdo Island
Yoon-Jong Nam, Hyeokjun Yoon, Hyun Kim, Jong-Guk Kim
Journal of Life Science.2015; 25(3): 323. CrossRef - Community Structure of Skin Microbiome of Gulf Killifish, Fundulus grandis, Is Driven by Seasonality and Not Exposure to Oiled Sediments in a Louisiana Salt Marsh
Andrea M. Larsen, Stephen A. Bullard, Matthew Womble, Covadonga R. Arias
Microbial Ecology.2015; 70(2): 534. CrossRef - Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes
Laura Baldo, Joan Lluís Riera, Ave Tooming-Klunderud, M. Mar Albà, Walter Salzburger, Diego Fontaneto
PLOS ONE.2015; 10(5): e0127462. CrossRef - Selection in the host structures the microbiota associated with developing cod larvae (Gadus morhua)
Ingrid Bakke, Eivind Coward, Tom Andersen, Olav Vadstein
Environmental Microbiology.2015; 17(10): 3914. CrossRef - Comparative Analysis of the Intestinal Bacterial Communities in Different Species of Carp by Pyrosequencing
Tongtong Li, Meng Long, François-Joël Gatesoupe, Qianqian Zhang, Aihua Li, Xiaoning Gong
Microbial Ecology.2015; 69(1): 25. CrossRef - Effects of Host Phylogeny and Habitats on Gut Microbiomes of Oriental River Prawn (Macrobrachium nipponense)
Tzong-Der Tzeng, Yueh-Yang Pao, Po-Cheng Chen, Francis Cheng-Hsuan Weng, Wen Dar Jean, Daryi Wang, Gaofeng Qiu
PLOS ONE.2015; 10(7): e0132860. CrossRef - Sorption and degradation of triclosan in sediments and its effect on microbes
Xiaolong Huang, Chenxi Wu, Hongjuan Hu, Yuhe Yu, Jiantong Liu
Ecotoxicology and Environmental Safety.2015; 116: 76. CrossRef - Intestinal bacterial community structure differs between healthy and inflamed intestines in Atlantic salmon (Salmo salar L.)
Felipe E. Reveco, Margareth Øverland, Odd H. Romarheim, Liv T. Mydland
Aquaculture.2014; 420-421: 262. CrossRef - The Colonization Dynamics of the Gut Microbiota in Tilapia Larvae
Christos Giatsis, Detmer Sipkema, Hauke Smidt, Johan Verreth, Marc Verdegem, Pikul Jiravanichpaisal
PLoS ONE.2014; 9(7): e103641. CrossRef - Do the intestinal microbiotas differ between paddlefish (Polyodon spathala
) and bighead carp (Aristichthys nobilis
) reared in the same pond?
X.M. Li, Y.J. Zhu, Q.Y. Yan, E. Ringø, D.G. Yang
Journal of Applied Microbiology.2014; 117(5): 1245. CrossRef - Comparative study on gastrointestinal microbiota of eight fish species with different feeding habits
J. Li, J. Ni, J. Li, C. Wang, X. Li, S. Wu, T. Zhang, Y. Yu, Q. Yan
Journal of Applied Microbiology.2014; 117(6): 1750. CrossRef - Probiotics in aquaculture: a current assessment
Tania Pérez‐Sánchez, Imanol Ruiz‐Zarzuela, Ignacio de Blas, José L. Balcázar
Reviews in Aquaculture.2014; 6(3): 133. CrossRef - Gut Microbiota Contributes to the Growth of Fast-Growing Transgenic Common Carp (Cyprinus carpio L.)
Xuemei Li, Qingyun Yan, Shouqi Xie, Wei Hu, Yuhe Yu, Zihua Hu, Kostas Bourtzis
PLoS ONE.2013; 8(5): e64577. CrossRef - Bacterial Diversity in the Guts of Sea Cucumbers (Apostichopus japonicus) and Shrimps (Litopenaeus vannamei) Investigated with Tag-Encoded 454 Pyrosequencing of 16S rRNA Genes
Eun Soo Noh, Young-Sam Kim, Dong-Hyun Kim, Kyoung-Ho Kim
The Korean Journal of Microbiology.2013; 49(3): 237. CrossRef