Bacteroides sedimenti sp. nov., isolated from a chloroethenesdechlorinating consortium enriched from river sediment

Mohamed Ismaeil; Naoko Yoshida; Arata Katayama

doi:10.1007/s12275-018-8187-z

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Bacteroides sedimenti sp. nov., isolated from a chloroethenesdechlorinating consortium enriched from river sediment: Mohamed Ismaeil ¹, Naoko Yoshida ^2,3, Arata Katayama ^1,3,4; Journal of Microbiology 2018;56(9):619-627.
DOI: https://doi.org/10.1007/s12275-018-8187-z
Published online: August 23, 2018

¹Department of Environmental Engineering and Architecture, Graduate School of Environmental Studies, Nagoya University, Nagoya 464-8603, Japan, ²Department of Civil Engineering, Nagoya Institute of Technology (Nitech), Nagoya 466-8555, Japan, ³Institute of Materials and Systems for Sustainability (IMaSS), Nagoya University, Nagoya 464-8603, Japan, ⁴Department of Civil Engineering, Graduate School of Engineering, Nagoya University, Nagoya 464-8603, Japan¹Department of Environmental Engineering and Architecture, Graduate School of Environmental Studies, Nagoya University, Nagoya 464-8603, Japan, ²Department of Civil Engineering, Nagoya Institute of Technology (Nitech), Nagoya 466-8555, Japan, ³Institute of Materials and Systems for Sustainability (IMaSS), Nagoya University, Nagoya 464-8603, Japan, ⁴Department of Civil Engineering, Graduate School of Engineering, Nagoya University, Nagoya 464-8603, Japan

Received: 9 April 2018 • Revised: 11 June 2018 • Accepted: 21 June 2018

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Abstract

A Gram-negative, anaerobic, non-motile, non-spore-forming bacterial strain, designated YN3PY1T, was isolated from a chloroethene-dechlorinating consortium originally enriched from river sediment. The strain enhanced the dechlorination of cis-dichloroethene to ethene by Dehalococcoides, especially at the early stages of cultivation. Strain YN3PY1T was the first isolate of the genus Bacteroides, obtained from animal- independent environments, and its 16S rRNA gene had the highest sequence similarity (97.1%) with Bacteroides luti JCM 19020T in the ‘Coprosuis’ clade of the genus Bacteroides. Strain YN3PY1T formed a phylogenetic cluster with other phylotypes detected from sediments and paddy soil, and the cluster was affiliated with a linage of so-called free-living Bacteroides detected from animal-independent environments, suggesting specific adaptations to sediment-like environments. The strain showed typical phenotypes of Bacteroides, i.e., polysaccharolytic anaerobe having anteiso-C15:0 as the most abundant fatty acid and MK-11 as one of the major respiratory quinones. Additionally, the strain uniquely transforms glucose to lactate and malate, has MK-12 as another major respiratory quinone, and grows at comparatively low temperatures, i.e. 10–40°C, with an optimum at 28°C. Based on the presented data, strain YN3PY1T (= KCTC 15656T = NBRC 113168T) can be proposed as a novel species of the genus Bacteroides and named as Bacteroides sedimenti sp. nov.

Keywords: Bacteroides sedimenti;chloroethenes;dechlorination;free-living Bacteroides

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Bacteroides sedimenti sp. nov., isolated from a chloroethenesdechlorinating consortium enriched from river sediment

J. Microbiol. 2018;56(9):619-627. Published online August 23, 2018

DOI: https://doi.org/10.1007/s12275-018-8187-z

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