Carbohydrate metabolism genes dominant in a subtropical marine mangrove ecosystem revealed by metagenomics analysis

Huaxian Zhao; Bing Yan; Shuming Mo; Shiqing Nie; Quanwen Li; Qian Ou; Bo Wu; Gonglingxia Jiang; Jinli Tang; Nan Li; Chengjian Jiang

doi:10.1007/s12275-019-8679-5

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Carbohydrate metabolism genes dominant in a subtropical marine mangrove ecosystem revealed by metagenomics analysis: Huaxian Zhao ¹, Bing Yan ², Shuming Mo ¹, Shiqing Nie ¹, Quanwen Li ¹, Qian Ou ¹, Bo Wu ¹, Gonglingxia Jiang ³, Jinli Tang ³, Nan Li ³, Chengjian Jiang ^1,2; Journal of Microbiology 2019;57(7):575-586.
DOI: https://doi.org/10.1007/s12275-019-8679-5
Published online: June 27, 2019

¹State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Guangxi University, Guangxi, 530004, P. R. China, ²Guangxi Key Laboratory of Mangrove Conservation and Utilization, Guangxi Mangrove Research Center, Guangxi Academy of Sciences, Guangxi, 536000, P. R. China, ³Key Laboratory of Environment Change and Resources Use in Beibu Gulf (Guangxi Teachers Education University), Ministry of Education, Guangxi, 530001, P. R. China¹State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Guangxi University, Guangxi, 530004, P. R. China, ²Guangxi Key Laboratory of Mangrove Conservation and Utilization, Guangxi Mangrove Research Center, Guangxi Academy of Sciences, Guangxi, 536000, P. R. China, ³Key Laboratory of Environment Change and Resources Use in Beibu Gulf (Guangxi Teachers Education University), Ministry of Education, Guangxi, 530001, P. R. China

Corresponding author: Nan Li , Tel: +86-771-3239403;,
Chengjian Jiang , Tel: +86-771-3239403;,

Received: 10 December 2018 • Revised: 20 February 2019 • Accepted: 4 March 2019

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Abstract

Mangrove sediment microorganisms play a vital role in the energy transformation and element cycling in marine wetland ecosystems. Using metagenomics analysis strategy, we compared the taxonomic structure and gene profile of the mangrove and non-mangrove sediment samples at the subtropical estuary in Beibu Gulf, South China Sea. Proteobacteria, Bacteroidetes, and Firmicutes were the most abundant bacterial phyla. Archaeal family Methanosarcinaceae and bacterial genera Vibrio and Dehalococcoides were significantly higher in the mangrove sediments than in the nonmangrove sediments. Functional analysis showed that “Carbohydrate metabolism” was the most abundant metabolic category. The feature of carbohydrate-active enzymes (CZs) was analyzed using the Carbohydrate-Active EnZymes Database. The significant differences of CZs between mangrove and non-mangrove sediments, were attributed to the amounts of polyphenol oxidase (EC 1.10.3.-), hexosyltransferase (EC 2.4.1.-), and β-N-acetylhexosaminidase (EC 3.2.1.52), which were higher in the mangrove sediment samples. Principal component analysis indicated that the microbial community and gene profile between mangrove and non-mangrove sediments were distinct. Redundancy analysis showed that total organic carbon is a significant factor that affects the microbial community and gene distribution. The results indicated that the mangrove ecosystem with massive amounts of organic carbon may promote the richness of carbohydrate metabolism genes and enhance the degradation and utilization of carbohydrates in the mangrove sediments.

Keywords: metagenomics analysis;mangrove ecosystem;microbial community;gene profile;carbohydrate metabolism

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Carbohydrate metabolism genes dominant in a subtropical marine mangrove ecosystem revealed by metagenomics analysis

J. Microbiol. 2019;57(7):575-586. Published online June 27, 2019

DOI: https://doi.org/10.1007/s12275-019-8679-5

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