Cohnella abietis sp. nov., isolated from Korean fir (Abies koreana) rhizospheric soil of Halla mountain

Lingmin Jiang; Sophea Pheng; Keun Chul Lee; Se Won Kang; Jae Cheol Jeong; Cha Young Kim; Hyeong Cheol Park; Dae-Hyuk Kim; Suk Weon Kim; Song-Gun Kim; Jiyoung Lee

doi:10.1007/s12275-019-9136-1

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Cohnella abietis sp. nov., isolated from Korean fir (Abies koreana) rhizospheric soil of Halla mountain: Lingmin Jiang ^1,2, Sophea Pheng ^1,3, Keun Chul Lee ¹, Se Won Kang ¹, Jae Cheol Jeong ¹, Cha Young Kim ¹, Hyeong Cheol Park ⁴, Dae-Hyuk Kim ², Suk Weon Kim ¹, Song-Gun Kim ^1,3, Jiyoung Lee ¹; Journal of Microbiology 2019;57(11):953-958.
DOI: https://doi.org/10.1007/s12275-019-9136-1
Published online: August 28, 2019

¹Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology, Jeongeup 56212, Republic of Korea, ²Department of Bioactive Materials, Chonbuk National University, Jeonju 54896, Republic of Korea, ³University of Science and Technology, Daejeon 34113, Republic of Korea, ⁴Division of Ecological Conservation, Bureau of Ecological Research, Seocheon 33657, Republic of Korea¹Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology, Jeongeup 56212, Republic of Korea, ²Department of Bioactive Materials, Chonbuk National University, Jeonju 54896, Republic of Korea, ³University of Science and Technology, Daejeon 34113, Republic of Korea, ⁴Division of Ecological Conservation, Bureau of Ecological Research, Seocheon 33657, Republic of Korea

Corresponding author: Song-Gun Kim , Tel: +82-63-570-5627,
Jiyoung Lee , Tel: +82-63-570-5627,

Received: 18 March 2019 • Revised: 2 July 2019 • Accepted: 3 July 2019

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Abstract

A strictly aerobic, motile, endospore-forming, rod-shaped bacterium, designated HS21T, was isolated from rhizospheric soil of the Korean fir tree (Abies koreana) from Halla mountain on Jeju island, Korea. Growth of strain HS21T was observed at pH 6.0–8.0 (optimum: pH 7.0), 0–2% (w/v) NaCl and 4–30°C (optimum: 25°C). A comparative analysis of 16S rRNA gene sequences showed that strain HS21T was most closely related to Cohnella luojiensis HY-22RT (97.6%), followed by C. lupini RLAHU4BT (97.4%) and C. collisoli NKM- 5T (97.2%). The genome of strain HS21T comprised a circular chromosome of 7,059,027 bp with 44.8% G + C content. The DNA-DNA relatedness values between strain HS21T and C. luojiensis HY-22RT and C. lupini RLAHU4BT were 18.1% and 13.8%, respectively. The major cellular fatty acids (> 5%) of the isolate were anteiso-C15:0, iso-C16:0, C16:0, and iso-C15:0. The polar lipids present were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, lysylphosphatidylglycerol, and three unidentified aminophospholipids. Based on its phenotypic, phylogenetic, genomic, and chemotaxonomic properties, strain HS21T represents a novel species of the genus Cohnella, for which the name Cohnella abietis sp. nov. is proposed. The type strain is HS21T (= KCTC 43028T = CCTCC AB 2019010T).

Keywords: Cohnella abietis;taxonomy;genome;Korea fir

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Cohnella abietis sp. nov., isolated from Korean fir (Abies koreana) rhizospheric soil of Halla mountain

J. Microbiol. 2019;57(11):953-958. Published online August 28, 2019

DOI: https://doi.org/10.1007/s12275-019-9136-1

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