Natronorubrum halophilum sp. nov. isolated from two inland salt lakes

Cong-Qi Tao; Yi Ding; Yang-Jie Zhao; Heng-Lin Cui

doi:10.1007/s12275-020-9514-8

Articles

Page Path: HOME > J. Microbiol > Volume 58(2); 2020 > Article

Journal Article
Natronorubrum halophilum sp. nov. isolated from two inland salt lakes: Cong-Qi Tao , Yi Ding , Yang-Jie Zhao , Heng-Lin Cui; Journal of Microbiology 2020;58(2):105-112.
DOI: https://doi.org/10.1007/s12275-020-9514-8
Published online: January 29, 2020

School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, P. R. ChinaSchool of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, P. R. China

Corresponding author: Heng-Lin Cui , Tel: +86-0511-88780201,

Received: 31 October 2019 • Revised: 17 December 2019 • Accepted: 18 December 2019

prev next

49 Views
0 Download
17 Web of Science
17 Crossref
17 Scopus

Full Article

Abstract

Two halophilic archaeal strains, SHR37T and NEN6, were isolated from salt lakes located in the Tibet and Xinjiang regions of China. The two strains were found to form a single cluster (99.9% and 99.3% similarity, respectively) separating them from the six current members of Natronorubrum (94.7– 96.9% and 86.1–90.8% similarity, respectively) on the basis of the 16S rRNA and rpoB􍿁 gene sequence similarities and phylogenetic analysis. Diverse phenotypic characteristics differentiate strains SHR37T and NEN6 from current Natronorubrum members. Their polar lipids are C20C20 and C20C25 glycerol diether derivatives of PG, PGP-Me, and a major glycolipid chromatographically identical to disulfated mannosyl glucosyl diether (S2-DGD). Four minor unidentified glycolipids are also present. The OrthoANI and in silico DDH values of the two strains were 97.3% and 76.1%, respectively, which were much higher than the threshold values proposed as a species boundary (ANI 95–96% and in silico DDH 70%), which revealed that the two strains represent one species; the two values (ANI 79.0–81.9% and in silico DDH 23.5– 25.7%) of the strains examined in this study and the current members of Natronorubrum are much lower than the recommended threshold values, suggesting that strains SHR37T and NEN6 represent a genomically different species of Natronorubrum. These results showed that strains SHR37T (= CGMCC 1.15233T = JCM 30845T) and NEN6 (= CGMCC 1.17161) represent a novel species of Natronorubrum, for which the name Natronorubrum halophilum sp. nov. is proposed.

Keywords: Natronorubrum halophilum sp. nov.;halophilic archaeon;salt lakes;genome;phylogenomic analyses

Figure & Data

References

Citations

Citations to this article as recorded by

Genome-based taxonomy of genera Haloarcula and Halomicroarcula, and description of six novel species of Haloarcula
Xue Ma, Yao Hu, Xin-Xin Li, Shun Tan, Mu Cheng, Jing Hou, Heng-Lin Cui
Extremophiles.2024;[Epub] CrossRef
Genome-based classification of the family Haloferacaceae and description of five novel species of Halobaculum
Shun Tan, Ling-Rui Zhu, Qing-Ke Zhang, Xin-Yue Dong, Jing Hou, Heng-Lin Cui
Extremophiles.2024;[Epub] CrossRef
Halobacterium yunchengense sp. nov., Natronomonas amylolytica sp. nov., Halorientalis halophila sp. nov., Halobellus salinisoli sp. nov., halophilic archaea isolated from a saline lake and inland saline soil
Ling Cui, Yao Hu, Xin-Xin Li, Xue Ma, Mu Cheng, Shun Tan, Jing Hou, Heng-Lin Cui
Extremophiles.2024;[Epub] CrossRef
Prokaryotic Community Structure, Abundances, and Potential Ecological Functions in a Mars Analog Salt Lake
Wenqi Cai, Ke Yu, Wanting Yang, Rong Mu, Chunang Lian, Luhua Xie, Yan Yan, Shibin Liao, Fan Wang
Astrobiology.2023; 23(5): 550. CrossRef
Halocatena marina sp. nov., a novel filamentous halophilic archaeon isolated from marine tidal flat and emended description of the genus Halocatena
Zhang-Ping Wu, Xi-Wen Zheng, Ya-Ping Sun, Bei-Bei Wang, Jing Hou, Heng-Lin Cui
Extremophiles.2023;[Epub] CrossRef
Halomicroarcula laminariae sp. nov. and Halomicroarcula marina sp. nov., extremely halophilic archaea isolated from salted brown alga Laminaria and coastal saline-alkali lands
Xue Ma, Yao Hu, Xin-Xin Li, Shun Tan, Mu Cheng, Jing Hou, Heng-Lin Cui
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef
Natrinema caseinilyticum sp. nov., Natrinema gelatinilyticum sp. nov., Natrinema marinum sp. nov., Natrinema zhouii sp. nov., extremely halophilic archaea isolated from marine environments and a salt mine
Yao Hu, Xue Ma, Xin-Xin Li, Shun Tan, Mu Cheng, Jing Hou, Heng-Lin Cui
Extremophiles.2023;[Epub] CrossRef
Halobacterium wangiae sp. nov. and Halobacterium zhouii sp. nov., two extremely halophilic archaea isolated from sediment of a salt lake and saline soil of an inland saltern
Bei-Bei Wang, Chen-Xi Bao, Ya-Ping Sun, Jing Hou, Heng-Lin Cui
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef
Halocatena salina sp. nov., a filamentous halophilic archaeon isolated from Aiding Salt Lake
Zhang-Ping Wu, Xi-Wen Zheng, Ya-Ping Sun, Bei-Bei Wang, Jing Hou, Heng-Lin Cui
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
Correlating bacterial and archaeal community with efficiency of a coking wastewater treatment plant employing anaerobic-anoxic-oxic process in coal industry
Qiaoying Ban, Liguo Zhang, Jianzheng Li
Chemosphere.2022; 286: 131724. CrossRef
Isolation and characterization of tick-borne Roseomonas haemaphysalidis sp. nov. and rodent-borne Roseomonas marmotae sp. nov.
Wentao Zhu, Juan Zhou, Shan Lu, Jing Yang, Xin-He Lai, Dong Jin, Ji Pu, Yuyuan Huang, Liyun Liu, Zhenjun Li, Jianguo Xu
Journal of Microbiology.2022; 60(2): 137. CrossRef
Haloprofundus salilacus sp. nov., Haloprofundus halobius sp. nov. and Haloprofundus salinisoli sp. nov.: three extremely halophilic archaea isolated from salt lake and saline soil
Si-Ya Li, Yu-Jie Xin, Chen-Xi Bao, Jing Hou, Heng-Lin Cui
Extremophiles.2022;[Epub] CrossRef
Natronorubrum halalkaliphilum sp. nov., a haloalkaliphilic archaeon isolated from soda lake in Inner Mongolia Autonomous Region, China
Qiong Xue, Dahe Zhao, Zhenqiang Zuo, Jian Zhou, Hua Xiang
Archives of Microbiology.2021; 203(5): 2335. CrossRef
Phylogenomics of Haloarchaea: The Controversy of the Genera Natrinema-Haloterrigena
Rafael R. de la Haba, Hiroaki Minegishi, Masahiro Kamekura, Yasuhiro Shimane, Antonio Ventosa
Frontiers in Microbiology.2021;[Epub] CrossRef
Salinadaptatus halalkaliphilus gen. nov., sp. nov., a haloalkaliphilic archaeon isolated from salt pond in Inner Mongolia Autonomous Region, China
Qiong Xue, Zhenqiang Zuo, Heng Zhou, Jian Zhou, Shengjie Zhang, Jing Han, Dahe Zhao, Hua Xiang
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef
Cultivation of halophilic archaea (class Halobacteria) from thalassohaline and athalassohaline environments
Heng-Lin Cui, Mike L. Dyall-Smith
Marine Life Science & Technology.2021; 3(2): 243. CrossRef
List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology.2020; 70(5): 2960. CrossRef

Cite this Article

Cite this Article: export Copy Download Format; Close

Download Citation

Download a citation file in RIS format that can be imported by all major citation management software, including EndNote, ProCite, RefWorks, and Reference Manager.

Format:

RIS — For EndNote, ProCite, RefWorks, and most other reference management software
BibTeX — For JabRef, BibDesk, and other BibTeX-specific software

Include:

Citation for the content below
Citation and abstract for the content below

Natronorubrum halophilum sp. nov. isolated from two inland salt lakes

J. Microbiol. 2020;58(2):105-112. Published online January 29, 2020

DOI: https://doi.org/10.1007/s12275-020-9514-8

Related articles