Figure & Data

References

Citations

Citations to this article as recorded by  

• DNA methylome regulates virulence and metabolism in Pseudomonas syringae
  Jiadai Huang, Fang Chen, Beifang Lu, Yue Sun, Youyue Li, Canfeng Hua, Xin Deng
  eLife.2025;[Epub]     CrossRef
• DNA methylation confers epigenetic changes in cold-adapted microorganisms in response to cold stress
  Xuying Bu, Xufeng Dou, Zhe Chen, Lan Liu, Yuxia Mei, Min Ren
  Extremophiles.2025;[Epub]     CrossRef
• The soil microbial methylome: A tool to explore the role of epigenetic memory in driving soil abiotic legacy effects
  Tom Sizmur, Alexey Larionov
  Soil Biology and Biochemistry.2025; 202: 109712.     CrossRef
• Decoding the genome and epigenome of avian Escherichia coli strains by R10.4.1 nanopore sequencing
  Jingyao Wang, Xudong Liu, Yanwen Shao, Runsheng Li, Surya Paudel
  Frontiers in Veterinary Science.2025;[Epub]     CrossRef
• Erasing Methylation Marks on DNA by Plant-Specific DEMETER Family DNA Glycosylases
  Praveen Rai, Poonam Kumari, Vineet Gaur
  Journal of Plant Growth Regulation.2024;[Epub]     CrossRef
• Irreversible Inhibition of DNMT3A by an N‐Mustard Analog of S‐Adenosyl‐L–Methionine
  Nichanun Sirasunthorn, Isabelle Roseto, Lindsay Pecor, Lindsay R. Comstock
  ChemBioChem.2024;[Epub]     CrossRef
• Restriction modification systems in archaea: A panoramic outlook
  Pallavi Gulati, Ashish Singh, Sandeep Patra, Shreyas Bhat, Anil Verma
  Heliyon.2024; 10(8): e27382.     CrossRef
• BsuMI regulates DNA transformation in Bacillus subtilis besides the defense system and the constructed strain with BsuMI-absence is applicable as a universal transformation platform for wild-type Bacillus
  Zhao Xingya, Fu Xiaoping, Zhen Jie, Yang Jun, Zheng Hongchen, Bai Wenqin, Song Hui
  Microbial Cell Factories.2024;[Epub]     CrossRef
• Toward DNA-Based Recording of Biological Processes
  Hyeri Jang, Sung Sun Yim
  International Journal of Molecular Sciences.2024; 25(17): 9233.     CrossRef
• The complete genome sequence of unculturable Mycoplasma faucium obtained through clinical metagenomic next-generation sequencing
  Artur J. Sabat, Tim Durfee, Schuyler Baldwin, Viktoria Akkerboom, Andreas Voss, Alexander W. Friedrich, Erik Bathoorn
  Frontiers in Cellular and Infection Microbiology.2024;[Epub]     CrossRef
• Approaches for Benchmarking Single-Cell Gene Regulatory Network Methods
  Karamveer, Yasin Uzun
  Bioinformatics and Biology Insights.2024;[Epub]     CrossRef
• Widespread prevalence of a methylation-dependent switch to activate an essential DNA damage response in bacteria
  Aditya Kamat, Ngat T. Tran, Mohak Sharda, Neha Sontakke, Tung B. K. Le, Anjana Badrinarayanan, Lotte Søgaard-Andersen
  PLOS Biology.2024; 22(3): e3002540.     CrossRef
• Evaluation of the enzymatic properties of DNA (cytosine-5)-methyltransferase M.ApeKI from archaea in the presence of metal ions
  Mao Hayashi, Yoshinari Wada, Akira Yamamura, Hideki Inoue, Naoya Yamashita, Shigetoshi Ichimura, Yasuhiro Iida
  Bioscience, Biotechnology, and Biochemistry.2024; 88(10): 1155.     CrossRef
• Moving toward the Inclusion of Epigenomics in Bacterial Genome Evolution: Perspectives and Challenges
  Iacopo Passeri, Francesca Vaccaro, Alessio Mengoni, Camilla Fagorzi
  International Journal of Molecular Sciences.2024; 25(8): 4425.     CrossRef
• Bacmethy: A novel and convenient tool for investigating bacterial DNA methylation pattern and their transcriptional regulation effects
  Ji‐Hong Liu, Yizhou Zhang, Ning Zhou, Jiale He, Jing Xu, Zhao Cai, Liang Yang, Yang Liu
  iMeta.2024;[Epub]     CrossRef
• Unraveling host regulation of gut microbiota through the epigenome–microbiome axis
  Michael L. Pepke, Søren B. Hansen, Morten T. Limborg
  Trends in Microbiology.2024; 32(12): 1229.     CrossRef
• Combined analysis of genome-wide DNA methylome and transcriptome reveals the first epigenetic-based antibiotic-resistance mechanism in Acinetobacter baumannii
  Rosario Nicola Brancaccio, Veronica Folliero, Domenico Di Rosa, Federica Dell’Annunziata, Elena Alexandrova, Marharyta Smal, Giorgio Giurato, Giovanni Boccia, Vittorio Panetta, Rita Greco, Alessandro Weisz, Francesca Rizzo, Gianluigi Franci
  Discover Bacteria.2024;[Epub]     CrossRef
• The evolutionary consequences of interactions between the epigenome, the genome and the environment
  Pierre Baduel, Iris Sammarco, Rowan Barrett, Marta Coronado‐Zamora, Amélie Crespel, Bárbara Díez‐Rodríguez, Janay Fox, Dario Galanti, Josefa González, Alexander Jueterbock, Eric Wootton, Ewan Harney
  Evolutionary Applications.2024;[Epub]     CrossRef
• Comparative Genomics of Pesticide-Degrading Enterococcus Symbionts of Spodoptera frugiperda (Lepidoptera: Noctuidae) Leads to the Identification of Two New Species and the Reappraisal of Insect-Associated Enterococcus Species
  Ana Flávia Freitas Gomes, Luís Gustavo de Almeida, Fernando Luis Cônsoli
  Microbial Ecology.2023; 86(4): 2583.     CrossRef
• Recent advances in phage defense systems and potential overcoming strategies
  Xiaoming Yuan, Zhichao Huang, Zhenjun Zhu, Jumei Zhang, Qingping Wu, Liang Xue, Juan Wang, Yu Ding
  Biotechnology Advances.2023; 65: 108152.     CrossRef
• Comprehensive insights into the metabolism characteristics of small RNA Qrr4 in Vibrio alginolyticus
  Yanni Zhao, Ningning Zhou, Jiamin Ren, Wang Liu, Chuang Zhou, Xuefeng Chen, Jieyu Zhao, Juanjuan Cao, Jinfang Yang, Jie Han, Huan Liu
  Applied Microbiology and Biotechnology.2023; 107(5-6): 1887.     CrossRef
• Growth condition-dependent differences in methylation imply transiently differentiated DNA methylation states in Escherichia coli
  Georgia L Breckell, Olin K Silander, B. Andrews
  G3.2023;[Epub]     CrossRef
• The DNA cytosine methylome revealed two methylation motifs in the upstream regions of genes related to morphological and physiological differentiation in Streptomyces coelicolor A(3)2 M145
  Annalisa Pisciotta, Alessia Maria Sampino, Alessandro Presentato, Marco Galardini, Angel Manteca, Rosa Alduina
  Scientific Reports.2023;[Epub]     CrossRef
• Characterisation of Type II DNA Methyltransferases of Metamycoplasma hominis
  Lars Vogelgsang, Azlan Nisar, Sebastian Alexander Scharf, Anna Rommerskirchen, Dana Belick, Alexander Dilthey, Birgit Henrich
  Microorganisms.2023; 11(6): 1591.     CrossRef
• The Restriction–Modification Systems of Clostridium carboxidivorans P7
  Patrick Kottenhahn, Gabriele Philipps, Boyke Bunk, Cathrin Spröer, Stefan Jennewein
  Microorganisms.2023; 11(12): 2962.     CrossRef
• Dual thermal ecotypes coexist within a nearly genetically identical population of the unicellular marine cyanobacteriumSynechococcus
  Joshua D. Kling, Michael D. Lee, Nathan G. Walworth, Eric A. Webb, Jordan T. Coelho, Paul Wilburn, Stephanie I. Anderson, Qianqian Zhou, Chunguang Wang, Megan D. Phan, Feixue Fu, Colin T. Kremer, Elena Litchman, Tatiana A. Rynearson, David A. Hutchins
  Proceedings of the National Academy of Sciences.2023;[Epub]     CrossRef
• Comparison of Yersinia enterocolitica DNA Methylation at Ambient and Host Temperatures
  Dustin J. Van Hofwegen, Carolyn J. Hovde, Scott A. Minnich
  Epigenomes.2023; 7(4): 30.     CrossRef
• Genome-wide lone strand adenine methylation in Deinococcus radiodurans R1: Regulation of gene expression through DR0643-dependent adenine methylation
  Suraj Joshi, Payel Ghosh, Sagar Barage, Bhakti Basu, Deepti D. Deobagkar
  Microbiological Research.2022; 257: 126964.     CrossRef
• MuLan-Methyl—multiple transformer-based language models for accurate DNA methylation prediction
  Wenhuan Zeng, Anupam Gautam, Daniel H Huson
  GigaScience.2022;[Epub]     CrossRef
• Evolution of Complex Regulation for Cell-Cycle Control
  Samuel H. A. von der Dunk, Berend Snel, Paulien Hogeweg, Laurence Hurst
  Genome Biology and Evolution.2022;[Epub]     CrossRef
• Advanced biotechnology using methyltransferase and its applications in bacteria: a mini review
  Jun Ren, Hyang-Mi Lee, JunHao Shen, Dokyun Na
  Biotechnology Letters.2022; 44(1): 33.     CrossRef
• Phase-variable Type I methyltransferase M.NgoAV from Neisseria gonorrhoeae FA1090 regulates phasevarion expression and gonococcal phenotype
  Monika Adamczyk-Poplawska, Pawel Bacal, Agnieszka Mrozek, Natalia Matczynska, Andrzej Piekarowicz, Agnieszka Kwiatek
  Frontiers in Microbiology.2022;[Epub]     CrossRef
• DNA Methyltransferases: From Evolution to Clinical Applications
  Victor M. Del Castillo Falconi, Karla Torres-Arciga, Genaro Matus-Ortega, José Díaz-Chávez, Luis A. Herrera
  International Journal of Molecular Sciences.2022; 23(16): 8994.     CrossRef
• Analyzing Modern Biomolecules: The Revolution of Nucleic-Acid Sequencing – Review
  Gabriel Dorado, Sergio Gálvez, Teresa E. Rosales, Víctor F. Vásquez, Pilar Hernández
  Biomolecules.2021; 11(8): 1111.     CrossRef
• Omics-based microbiome analysis in microbial ecology: from sequences to information
  Jang-Cheon Cho
  Journal of Microbiology.2021; 59(3): 229.     CrossRef
• RecA gene genetic diversity and its regulatory element analysis: The case of Vibrio cholerae
  Birhanu Zeleke, Hunduma Dinka
  Gene Reports.2021; 25: 101333.     CrossRef