Genome Sequencing Highlights the Plant Cell Wall Degrading Capacity of Edible Mushroom Stropharia rugosoannulata

Mengpei Guo; Xiaolong Ma; Yan Zhou; Yinbing Bian; Gaolei Liu; Yingli Cai; Tianji Huang; Hongxia Dong; Dingjun Cai; Xueji Wan; Zhihong Wang; Yang Xiao; Heng Kang

doi:10.1007/s12275-022-00003-7

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Genome Sequencing Highlights the Plant Cell Wall Degrading Capacity of Edible Mushroom Stropharia rugosoannulata: Mengpei Guo ¹, Xiaolong Ma ¹, Yan Zhou ², Yinbing Bian ², Gaolei Liu ¹, Yingli Cai ¹, Tianji Huang ³, Hongxia Dong ¹, Dingjun Cai ¹, Xueji Wan ¹, Zhihong Wang ¹, Yang Xiao ², Heng Kang ²; Journal of Microbiology 2023;61(1):83-93.
DOI: https://doi.org/10.1007/s12275-022-00003-7
Published online: February 1, 2023

¹Institute of Vegetable, Wuhan Academy of Agricultural Sciences, Wuhan 430065, Hubei, People’s Republic of China, ²Institute of Applied Mycology, Huazhong Agricultural University, Wuhan 430070, Hubei, People’s Republic of China, ³Hubei Changjiu Fungi Co. Ltd., Suizhou 431525, Hubei, People’s Republic of China¹Institute of Vegetable, Wuhan Academy of Agricultural Sciences, Wuhan 430065, Hubei, People’s Republic of China, ²Institute of Applied Mycology, Huazhong Agricultural University, Wuhan 430070, Hubei, People’s Republic of China, ³Hubei Changjiu Fungi Co. Ltd., Suizhou 431525, Hubei, People’s Republic of China

Corresponding author: Xiaolong Ma ,
Yan Zhou ,

Received: 11 October 2022 • Accepted: 4 November 2022

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Abstract

The basidiomycetous edible mushroom Stropharia rugosoannulata has excellent nutrition, medicine, bioremediation, and biocontrol properties. S. rugosoannulata has been widely and easily cultivated using agricultural by-products showing strong lignocellulose degradation capacity. However, the unavailable high-quality genome information has hindered the research on gene function and molecular breeding of S. rugosoannulata. This study provided a high-quality genome assembly and annotation from S. rugosoannulata monokaryotic strain QGU27 based on combined Illumina-Nanopore data. The genome size was about 47.97 Mb and consisted of 20 scaffolds, with an N50 of 3.73 Mb and a GC content of 47.9%. The repetitive sequences accounted for 17.41% of the genome, mostly long terminal repeats (LTRs). A total of 15,726 coding gene sequences were putatively identified with the BUSCO score of 98.7%. There are 142 genes encoding plant cell wall degrading enzymes (PCWDEs) in the genome, and 52, 39, 30, 11, 8, and 2 genes related to lignin, cellulose, hemicellulose, pectin, chitin, and cutin degradation, respectively. Comparative genomic analysis revealed that S. rugosoannulata is superior in utilizing aldehyde-containing lignins and is possible to utilize algae during the cultivation.

Keywords: Listeria monocytogenes;leucine-rich repeat;microglia;mitogen-activated protein kinase (MAPK);nuclear factor kappa-B (NF-κB);nucleotide binding and oligomerization;pyrin domain-containing 3 (NLRP3) inflammasome;pyroptosis;reactive oxygen species (ROS)

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Genome Sequencing Highlights the Plant Cell Wall Degrading Capacity of Edible Mushroom Stropharia rugosoannulata

J. Microbiol. 2023;61(1):83-93. Published online February 1, 2023

DOI: https://doi.org/10.1007/s12275-022-00003-7

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