Abstract
With developments in synthetic biology, “engineering biology” has emerged through standardization and platformization
based on hierarchical, orthogonal, and modularized biological systems. Genome engineering is necessary to manufacture
and design synthetic cells with desired functions by using bioparts obtained from sequence databases. Among various tools,
the CRISPR-Cas system is modularly composed of guide RNA and Cas nuclease; therefore, it is convenient for editing
the genome freely. Recently, various strategies have been developed to accurately edit the genome at a single nucleotide
level. Furthermore, CRISPR-Cas technology has been extended to molecular diagnostics for nucleic acids and detection of
pathogens, including disease-causing viruses. Moreover, CRISPR technology, which can precisely control the expression
of specific genes in cells, is evolving to find the target of metabolic biotechnology. In this review, we summarize the status
of various CRISPR technologies that can be applied to synthetic biology and discuss the development of synthetic biology
combined with CRISPR technology in microbiology.
Citations
Citations to this article as recorded by

- Sustainable Approaches for Managing Phthalate Pollution: Navigating Challenges, and Establishing the Future of Environmental Protection
Eswar Marcharla, Smarika Chauhan, Sneha Hariharan, Parthipan Punniyakotti, Thanigaivel Sundaram, Swamynathan Ganesan, Woong Kim, Muthusamy Govarthanan
Advanced Sustainable Systems.2025;[Epub] CrossRef - CRISPR applications in microbial World: Assessing the opportunities and challenges
Farhan Kursheed, Esha Naz, Sana Mateen, Ume Kulsoom
Gene.2025; 935: 149075. CrossRef - From Spores to Suffering: Understanding the Role of Anthrax in Bioterrorism
Ratnesh Singh Kanwar, Kirtida Gambhir, Tanishka Aggarwal, Akash Godiwal, Kuntal Bhadra
Military Medicine.2025; 190(3-4): e569. CrossRef - Unveiling the potential of gene editing techniques in revolutionizing Cancer treatment: A comprehensive overview
Pankaj Garg, Gargi Singhal, Siddhika Pareek, Prakash Kulkarni, David Horne, Aritro Nath, Ravi Salgia, Sharad S. Singhal
Biochimica et Biophysica Acta (BBA) - Reviews on Cancer.2025; 1880(1): 189233. CrossRef - From nanotechnology to AI: The next generation of CRISPR-based smart biosensors for infectious disease detection
Irkham, Abdullahi Umar Ibrahim, Chidi Wilson Nwekwo, Pwadubashiyi Coston Pwavodi, Salma Nur Zakiyyah, Mehmet Ozsoz, Yeni Wahyuni Hartati
Microchemical Journal.2025; 208: 112577. CrossRef - Trends in Aptasensing and the Enhancement of Diagnostic Efficiency and Accuracy
Mohd Afaque Ansari, Damini Verma, Mohd-Akmal Hamizan, Maumita Das Mukherjee, Noor Faizah Mohd-Naim, Minhaz Uddin Ahmed
ACS Synthetic Biology.2025; 14(1): 21. CrossRef - Comprehensive approaches to heavy metal bioremediation: Integrating microbial insights and genetic innovations
Mehran khan, Mir Muhammad Nizamani, Muhammad Asif, Ali Kamran, Guandi He, Xiangyang Li, Sanwei Yang, Xin Xie
Journal of Environmental Management.2025; 374: 123969. CrossRef - Cell-free systems: A synthetic biology tool for rapid prototyping in metabolic engineering
Kumyoung Jeung, Minsun Kim, Eunsoo Jang, Yang Jun Shon, Gyoo Yeol Jung
Biotechnology Advances.2025; 79: 108522. CrossRef - Synthetic biology and parasite genomics: engineering parasite-resistant human microbiomes for sustainable disease prevention
Esam S. Al-Malki
Beni-Suef University Journal of Basic and Applied Sciences.2025;[Epub] CrossRef - Engineering Useful Microbial Species for Pharmaceutical Applications
Amankeldi K. Sadanov, Baiken B. Baimakhanova, Saltanat E. Orasymbet, Irina A. Ratnikova, Zere Z. Turlybaeva, Gul B. Baimakhanova, Aigul A. Amitova, Anel A. Omirbekova, Gulzat S. Aitkaliyeva, Bekzhan D. Kossalbayev, Ayaz M. Belkozhayev
Microorganisms.2025; 13(3): 599. CrossRef - AlPaCas: allele-specific CRISPR gene editing through a protospacer-adjacent-motif (PAM) approach
Serena Rosignoli, Elisa Lustrino, Alessio Conci, Alessandra Fabrizi, Serena Rinaldo, Maria Carmela Latella, Elena Enzo, Gianni Prosseda, Laura De Rosa, Michele De Luca, Alessandro Paiardini
Nucleic Acids Research.2024; 52(W1): W29. CrossRef - Use of paired Cas9-NG nickase and truncated sgRNAs for single-nucleotide microbial genome editing
Song Hee Jeong, Ho Joung Lee, Sang Jun Lee
Frontiers in Genome Editing.2024;[Epub] CrossRef - Developing pioneering pharmacological strategies with CRISPR/Cas9 library screening to overcome cancer drug resistance
Yu He, Huan Li, Xueming Ju, Bo Gong
Biochimica et Biophysica Acta (BBA) - Reviews on Cancer.2024; 1879(6): 189212. CrossRef - Efficient CRISPR-Cas12f1-Mediated Multiplex Bacterial Genome Editing via Low-Temperature Recovery
Se Ra Lim, Hyun Ju Kim, Sang Jun Lee
Journal of Microbiology and Biotechnology.2024; 34(7): 1522. CrossRef - CRISPR-based biosensor for the detection of Marburg and Ebola virus
Irkham Irkham, Abdullahi Umar Ibrahim, Pwadubashiyi Coston Pwavodi, Chidi Wilson Nwekwo, Yeni Wahyuni Hartati
Sensing and Bio-Sensing Research.2024; 43: 100601. CrossRef - Advancements in Synthetic Biology for Enhancing Cyanobacterial Capabilities in Sustainable Plastic Production: A Green Horizon Perspective
Taufiq Nawaz, Liping Gu, Zhong Hu, Shah Fahad, Shah Saud, Ruanbao Zhou
Fuels.2024; 5(3): 394. CrossRef - Genetic Engineering in Bacteria, Fungi, and Oomycetes, Taking Advantage of CRISPR
Piao Yang, Abraham Condrich, Ling Lu, Sean Scranton, Camina Hebner, Mohsen Sheykhhasan, Muhammad Azam Ali
DNA.2024; 4(4): 427. CrossRef - Perspective Evaluation of Synthetic Biology Approaches for Effective Mitigation of Heavy Metal Pollution
Sandhya Mishra, Anju Patel, Pankaj Bhatt, Shaohua Chen, Pankaj Kumar Srivastava
Reviews of Environmental Contamination and Toxicology.2024;[Epub] CrossRef - Advancing microbiota therapeutics: the role of synthetic biology in engineering microbial communities for precision medicine
Asiya Nazir, Fathima Hasnain Nadeem Hussain, Afsheen Raza
Frontiers in Bioengineering and Biotechnology.2024;[Epub] CrossRef - Multifaceted Applications of Synthetic Microbial Communities: Advances in Biomedicine, Bioremediation, and Industry
Edgar Adrian Contreras-Salgado, Ana Georgina Sánchez-Morán, Sergio Yair Rodríguez-Preciado, Sonia Sifuentes-Franco, Rogelio Rodríguez-Rodríguez, José Macías-Barragán, Mariana Díaz-Zaragoza
Microbiology Research.2024; 15(3): 1709. CrossRef - Prospects for synthetic biology in 21st Century agriculture
Xingyan Ye, Kezhen Qin, Alisdair R. Fernie, Youjun Zhang
Journal of Genetics and Genomics.2024;[Epub] CrossRef - Biotechnological production of omega-3 fatty acids: current status and future perspectives
Jiansong Qin, Elif Kurt, Tyler LBassi, Lucas Sa, Dongming Xie
Frontiers in Microbiology.2023;[Epub] CrossRef - Emerging Technologies in Industrial Microbiology: From Bioengineering to CRISPR-Cas Systems
Umar Farooq, Malathi Hanumanthayya, Izharul Haq
Salud, Ciencia y Tecnología.2023; 3: 406. CrossRef - Optimized Linear DNA Recombineering for CRISPR-Cpf1 System in Corynebacterium glutamicum
Ting Wang, Xiaowan Jiang, Shufang Lv, Linfeng Hu, Shuangcheng Gao, Qingyang Xu, Junhui Zhang, Dianyun Hou
Fermentation.2023; 10(1): 31. CrossRef