Abstract
Genome-wide transcriptional analysis of a Saccharomyces cerevisiae batch culture revealed that more than 829 genes were regulated in response to an environmental shift from pH 6 to pH 3 by added sulfuric acid. This shift in pH was not detrimental to the rate of growth compared to a control culture that was maintained at pH 6 and the transcriptional changes most strikingly implicated not up- but down-regulation of stress responses. In addition, the transcriptional changes upon acid addition indicated remodeling of the cell wall and central carbon metabolism. The overall trend of changes was similar for the pH-shift experiment and the pH 6 control. However, the changes in the pH 6 control were much weaker and occurred 2.5 h later than in the pH-shift experiment. Thus, the reaction to the steep pH decrease was an immediate response within the normal repertoire of adaptation shown in later stages of fermentation at pH 6. Artificially preventing the yeast from acidifying the medium may be considered physiologically stressful under the tested conditions.
Citations
Citations to this article as recorded by

- Development of a High-Cell-Density Production Process for a Biotherapeutic Yeast, Saccharomyces cerevisiae var. boulardii, for Use as a Human Probiotic
Ghaneshree Moonsamy, Sarisha Singh, Yrielle Roets-Dlamini, Koketso Kenneth Baikgaki, Santosh Omrajah Ramchuran
Fermentation.2025; 11(4): 186. CrossRef - Isolation of yeast from some Ethiopian traditional fermented beverages and in vitro evaluation for probiotic traits
Dagnew Bitew, Bogale Damtew, Anteneh Tesfaye, Berhanu Andualem
Heliyon.2024; 10(23): e40520. CrossRef - Assessment of Yeasts as Potential Probiotics: A Review of Gastrointestinal Tract Conditions and Investigation Methods
Nadia S. Alkalbani, Tareq M. Osaili, Anas A. Al-Nabulsi, Amin N. Olaimat, Shao-Quan Liu, Nagendra P. Shah, Vasso Apostolopoulos, Mutamed M. Ayyash
Journal of Fungi.2022; 8(4): 365. CrossRef - Microbiological and biochemical performances of six yeast species as potential starter cultures for wet fermentation of coffee beans
Hosam Elhalis, Julian Cox, Damian Frank, Jian Zhao
LWT.2021; 137: 110430. CrossRef - Bioconversion and valorization of cassava-based industrial wastes to bioethanol gel and its potential application as a clean cooking fuel
Andin Vita Amalia, Fidia Fibriana, Talitha Widiatningrum, Risa Dwita Hardianti
Biocatalysis and Agricultural Biotechnology.2021; 35: 102093. CrossRef - QTL mapping of a Brazilian bioethanol strain links the cell wall protein-encoding gene GAS1 to low pH tolerance in S. cerevisiae
Alessandro L. V. Coradini, Fellipe da Silveira Bezerra de Mello, Monique Furlan, Carla Maneira, Marcelo F. Carazzolle, Gonçalo Amarante Guimaraes Pereira, Gleidson Silva Teixeira
Biotechnology for Biofuels.2021;[Epub] CrossRef - Extreme Low Cytosolic pH Is a Signal for Cell Survival in Acid Stressed Yeast
Rodrigo Mendonça Lucena, Laura Dolz-Edo, Stanley Brul, Marcos Antonio de Morais, Gertien Smits
Genes.2020; 11(6): 656. CrossRef - The effects of starvation and acidification on lag phase duration of surviving yeast cells
Kenichi Shibata, Kohei Obase, Kiminori Itoh, Takashi Amemiya
Journal of Biotechnology.2018; 275: 60. CrossRef - Neutralization of acidic drainage by Cryptococcus sp. T1 immobilized in alginate beads
Masahiko Okai, Chisato Suwa, Shintaro Nagaoka, Nobuo Obara, Daisuke Mitsuya, Ayako Kurihara, Masami Ishida, Naoto Urano
Bioscience, Biotechnology, and Biochemistry.2017; 81(11): 2216. CrossRef - Genetic Interaction between HOG1 and SLT2 Genes in Signalling the Cellular Stress Caused by Sulphuric Acid in Saccharomyces cerevisiae
Rodrigo Mendonça de Lucena, Carolina Elsztein, Rafael Barros de Souza, Will de Barros Pita, Sérgio de Sá Leitão Paiva Jr., Marcos Antonio de Morais Jr.
Microbial Physiology.2015; 25(6): 423. CrossRef - Transcriptomic response of Saccharomyces cerevisiae for its adaptation to sulphuric acid-induced stress
Rodrigo Mendonça de Lucena, Carolina Elsztein, Will de Barros Pita, Rafael Barros de Souza, Sérgio de Sá Leitão Paiva Júnior, Marcos Antonio de Morais Junior
Antonie van Leeuwenhoek.2015; 108(5): 1147. CrossRef - RNA-seq analysis of Pichia anomala reveals important mechanisms required for survival at low pH
Eugene Fletcher, Amir Feizi, SungSoo Kim, Verena Siewers, Jens Nielsen
Microbial Cell Factories.2015;[Epub] CrossRef - Investigating Acid Stress Response in DifferentSaccharomycesStrains
Rogelio Lopes Brandão, Júlio César Câmara Rosa, Jacques Robert Nicoli, Marcos Vinicius Simi Almeida, Ana Paula do Carmo, Heloa Teixeira Queiros, Ieso Miranda Castro
Journal of Mycology.2014; 2014: 1. CrossRef - Participation of CWI, HOG and Calcineurin pathways in the tolerance of Saccharomyces cerevisiae to low pH by inorganic acid
R.M. Lucena, C. Elsztein, D.A. Simões, M.A. Morais
Journal of Applied Microbiology.2012; 113(3): 629. CrossRef - Bacterial structure and characterization of plant growth promoting and oil degrading bacteria from the rhizospheres of mangrove plants
Flávia Lima do Carmo, Henrique Fragoso dos Santos, Edir Ferreira Martins, Jan Dirk van Elsas, Alexandre Soares Rosado, Raquel Silva Peixoto
The Journal of Microbiology.2011; 49(4): 535. CrossRef - Drug resistance marker-aided genome shuffling to improve acetic acid tolerance in Saccharomyces cerevisiae
Dao-Qiong Zheng, Xue-Chang Wu, Pin-Mei Wang, Xiao-Qin Chi, Xiang-Lin Tao, Ping Li, Xin-Hang Jiang, Yu-Hua Zhao
Journal of Industrial Microbiology & Biotechnology.2011; 38(3): 415. CrossRef - Role of the Slt2 mitogen-activated protein kinase pathway in cell wall integrity and virulence in Candida glabrata
Taiga Miyazaki, Tatsuo Inamine, Shunsuke Yamauchi, Yosuke Nagayoshi, Tomomi Saijo, Koichi Izumikawa, Masafumi Seki, Hiroshi Kakeya, Yoshihiro Yamamoto, Katsunori Yanagihara, Yoshitsugu Miyazaki, Shigeru Kohno
FEMS Yeast Research.2010; 10(3): 343. CrossRef - The cotton ATP synthase δ1 subunit is required to maintain a higher ATP/ADP ratio that facilitates rapid fibre cell elongation
Y. Pang, H. Wang, W.-Q. Song, Y.-X. Zhu
Plant Biology.2010; 12(6): 903. CrossRef