- Volume 53(7); July 2015
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Review
- MINIREVIEW] Indole: a signaling molecule or a mere metabolic byproduct that alters bacterial physiology at a high concentration?
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Jisun Kim , Woojun Park
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J. Microbiol. 2015;53(7):421-428. Published online June 27, 2015
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DOI: https://doi.org/10.1007/s12275-015-5273-3
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Abstract
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Indole is an organic compound that is widespread in microbial
communities inhabiting diverse habitats, like the soil
environment and human intestines. Measurement of indole
production is a traditional method for the identification of
microbial species. Escherichia coli can produce millimolar
concentrations of indole in the stationary growth phase under
nutrient-rich conditions. Indole has received considerable
attention because of its remarkable effects on various
biological functions of the microbial communities, for example,
biofilm formation, motility, virulence, plasmid stability,
and antibiotic resistance. Indole may function as an
intercellular signaling molecule, like a quorum-sensing signal.
Nevertheless, a receptor system for indole and the function
of this compound in coordinated behavior of a microbial population
(which are requirements for a true signaling molecule)
have not yet been confirmed. Recent findings suggest
that a long-known quorum-sensing regulator, E. coli’s SdiA,
cannot recognize indole and that this compound may simply
cause membrane disruption and energy reduction, which
can lead to various changes in bacterial physiology including
unstable folding of a quorum-sensing regulator. Indole
appears to be responsible for acquisition of antibiotic resistance
via the formation of persister cells and activation of an
exporter. This review highlights and summarizes the current
knowledge about indole as a multitrophic molecule among
bacteria, together with recently identified new avenues of
research.
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Nuclear Receptor Research.2016;[Epub] CrossRef - Is Fluorescence Valid to Monitor Removal of Protein Bound Uremic Solutes in Dialysis?
Jürgen Arund, Merike Luman, Fredrik Uhlin, Risto Tanner, Ivo Fridolin, Sabato D'Auria
PLOS ONE.2016; 11(5): e0156541. CrossRef
Research Support, Non-U.S. Gov'ts
- Spirosoma montaniterrae sp. nov., an ultraviolet and gamma radiation-resistant bacterium isolated from mountain soil
-
Jae-Jin Lee , Myung-Suk Kang , Eun Sun Joo , Myung Kyum Kim , Wan-Taek Im , Hee-Young Jung , Sathiyaraj Srinivasan
-
J. Microbiol. 2015;53(7):429-434. Published online June 27, 2015
-
DOI: https://doi.org/10.1007/s12275-015-5008-5
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41
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21
Crossref
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Abstract
-
A Gram-negative, yellow-pigmented, long-rod shaped bacterial
strain designated DY10T was isolated from a soil sample
collected at Mt. Deogyusan, Jeonbuk province, South Korea.
Optimum growth observed at 30°C and pH 7. No growth was
observed above 1% (w/v) NaCl. Comparative 16S rRNA gene
sequence analysis showed that strain DY10T belonged to the
genus Spirosoma and was distantly related to Spirosoma arcticum
R2-35T (91.0%), Spirosoma lingual DSM 74T (90.8%),
Spirosoma endophyticum EX36T (90.7%), Spirosoma panaciterrae
DSM 21099T (90.5%), Spirosoma rigui WPCB118T
(90.2%), Spirosoma spitsbergense DSM 19989T (89.8%), Spirosoma
luteum DSM 19990T (89.6%), Spirosoma oryzae RHs22T
(89.6%), and Spirosoma radiotolerans DG5AT (89.1%). Strain
DY10T showed resistance to gamma and ultraviolet radiation.
The chemotaxonomic characteristics of strain DY10T were
consistent with those of the genus Spirosoma, with the quinone
system with MK-7 as the predominant menaquinone,
iso-C15:0, C16:1 ω5c, and summed feature3 (C16:1 ω7c/C16:1 ω6c),
and phosphatidylethanolamine as the major polar lipid. The
G+C content of the genomic DNA was 53.0 mol%. Differential
phenotypic properties with the closely related type
strains clearly distinguished strain DY10T from previously
described members of the genus Spirosoma and represents
a novel species in this genus, for which the name Spirosoma
montaniterrae sp. nov. is proposed. The type strain is DY10T
(=KCTC 23999T =KEMB 9004-162T =JCM 18492T).
-
Citations
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Jihye Jung, Dawon Jo, Myoungjoo Riu, Seongho Ahn, Do-Hyun Kim
Microbiology and Biotechnology Letters.2024; 52(2): 208. CrossRef - Characterization of radiation-resistance mechanism in Spirosoma montaniterrae DY10T in terms of transcriptional regulatory system
Changyun Cho, Dohoon Lee, Dabin Jeong, Sun Kim, Myung Kyum Kim, Sathiyaraj Srinivasan
Scientific Reports.2023;[Epub] CrossRef -
Ideonella oryzae sp. nov., isolated from soil, and Spirosoma liriopis sp. nov., isolated from fruits of Liriope platyphylla
Yonghee Jung, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Larkinella humicola sp. nov., a gamma radiation-resistant bacterium isolated from soil
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Archives of Microbiology.2022;[Epub] CrossRef - Full Issue PDF
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Antonie van Leeuwenhoek.2021; 114(2): 151. CrossRef - Divergence of Phyllosphere Microbial Communities Between Females and Males of the Dioecious Populus cathayana
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Molecular Plant-Microbe Interactions®.2021; 34(4): 351. CrossRef - Characterization of black patina from the Tiber River embankments using Next-Generation Sequencing
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PLOS ONE.2020; 15(1): e0227639. CrossRef - Spirosoma aureum sp. nov., and Hymenobacter russus sp. nov., radiation-resistant bacteria in Cytophagales order isolated from soil
Soohyun Maeng, Yuna Park, Joo Hyun Han, Sang Eun Lee, Jing Zhang, Min-Kyu Kim, In-Tae Cha, Ki-eun Lee, Byoung-Hee Lee, Myung Kyum Kim
Antonie van Leeuwenhoek.2020; 113(12): 2201. CrossRef -
Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
Guillaume Tahon, Liesbeth Lebbe, Anne Willems
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Leonid N. Ten, Joseph Okiria, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Dae Sung Lee, In-Kyu Kang, Myung Kyum Kim, Hee-Young Jung
Current Microbiology.2018; 75(4): 492. CrossRef - Spirosoma horti sp. nov., isolated from apple orchard soil
Weilan Li, Leonid N. Ten, Seung-Yeol Lee, In-Kyu Kang, Hee-Young Jung
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Weilan Li, Leonid N. Ten, Seung-Yeol Lee, Dong Hoon Lee, Hee-Young Jung
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Aharon Oren, George M Garrity
International Journal of Systematic and Evolutionary Microbiology
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Jae-Jin Lee, Yeon Hee Lee, Su Jin Park, Sangyong Lim, Sun-wook Jeong, Seung-Yeol Lee, Young-Je Cho, Myung Kyum Kim, Hee-Young Jung
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Journal of Microbiology.2016; 54(9): 588. CrossRef - Deinococcus persicinus sp. nov., a radiation-resistant bacterium from soil
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Jae-Jin Lee, Eun Sun Joo, Do Hee Lee, Hee-Young Jung, Myung Kyum Kim
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- Sphingosinicella ginsenosidimutans sp. nov., with ginsenoside converting activity
-
Jin-Kwang Kim , Myung-Suk Kang , Sung Chul Park , Kyeng-Min Kim , Kangduk Choi , Min-Ho Yoon , Wan-Taek Im
-
J. Microbiol. 2015;53(7):435-441. Published online June 27, 2015
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DOI: https://doi.org/10.1007/s12275-015-5087-3
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41
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Abstract
-
The Gram-reaction-negative, strictly aerobic, non-motile, nonspore-
forming, and rod-shaped bacterial strain designated
BS11T was isolated from the compost and its taxonomic position
was investigated by using a polyphasic approach. Strain
BS11T grew optimally at 30?7캜 and at pH 7.0 in the absence
of NaCl on nutrient agar. Strain BS11T displayed ?glucosidase
activity that was responsible for its ability to transform
ginsenoside Rb1 (one of the dominant active components of
ginseng) to Rd. On the basis of 16S rRNA gene sequence
similarity, strain BS11T was shown to belong to the family
Sphingomonadaceae and was related to Sphingosinicella vermicomposti
YC7378T (96.3% sequence similarity), S. xenopeptidilytica
3-2W4T (96.2%), S. microcystinivorans Y2T
(96.1%), and S. soli KSL-125 T (95.9%). The G+C content of
the genomic DNA was 64.9%. The major menaquinone was
Q-10 and the major fatty acids were summed feature 7 (comprising
C18:1 ?c/?t/?2t; 40.6%), C16:0 (22.5%), C17:1 ?c
(13.7%) and C17:0 (9.1%). DNA and chemotaxonomic data
supported the affiliation of strain BS11T to the genus Sphingosinicella.
Strain BS11T could be differentiated genotypically
and phenotypically from the recognized species of the
genus Sphingosinicella. The novel isolate therefore represents
a novel species, for which the name Sphingosinicella
ginsenosidimutans sp. nov. is proposed, with the type strain
BS11T (=KACC 16619T =JCM 18201T).
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- Flavisolibacter swuensis sp. nov. Isolated from Soil
-
Eun Sun Joo , Seho Cha , Myung Kyum Kim , Weonhwa Jheong , Taegun Seo , Sathiyaraj Srinivasan
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J. Microbiol. 2015;53(7):442-447. Published online June 27, 2015
-
DOI: https://doi.org/10.1007/s12275-015-5241-y
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43
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10
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Abstract
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A Gram-staining-negative, non-motile, non-spore-forming,
and rod-shaped bacterium designated as strain SR2-4-2T
was isolated from soil in South Korea. Phylogenetic analysis
based on 16S rRNA gene sequence of strain SR2-4-2T revealed
that it belonged to the genus of Flavisolibacter, family
of Chitinophagaceae, and class of Sphingobacteriia. It shared
sequence similarities with Flavisolibacter ginsengisoli Gsoil
643T (96.4%), Flavisolibacter ginsengiterrae Gsoil 492T (96.3%),
and Flavisolibacter rigui 02SUJ3T (93.0%). Chemotaxonomic
data revealed that its predominant fatty acids were iso-C15:0
(26.4%) and iso-C17:0 3OH (10.7%). Its major polar lipid was
phosphatidylethanolamine (PE) and its predominant respiratory
quinone was MK-7. The G+C content of genomic
DNA of the strain SR2-4-2T DNA was 45.0%. Based on the
phylogenetic, chemotaxonomic, and phenotypic data, the
strain SR2-4-2T (=JCM 19974T =KEMB 9004-156T) is classified
as a type strain of a novel species for which the name of
Flavisolibacter swuensis sp. nov. is proposed.
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Javier Pascual, Bärbel U. Foesel, Alicia Geppert, Katharina J. Huber, Jörg Overmann
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Roland C. Wilhelm, Erick Cardenas, Hilary Leung, András Szeitz, Lionel D. Jensen, William W. Mohn
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Flavisolibacter tropicus sp. nov., isolated from tropical soil
Jae-Jin Lee, Myung-Suk Kang, Gyung Soon Kim, Chang Soek Lee, Sangyong Lim, Jidam Lee, Si Hyeon Roh, Hyerin Kang, Jung Min Ha, Sojung Bae, Hee-Young Jung, Myung Kyum Kim
International Journal of Systematic and Evolutionary Microbiology
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- Bacillus coreaensis sp. nov.: a xylan-hydrolyzing bacterium isolated from the soil of Jeju Island, Republic of Korea
-
Won-Jae Chi , Young Sang Youn , Jae-Seon Park , Soon-Kwang Hong
-
J. Microbiol. 2015;53(7):448-453. Published online June 27, 2015
-
DOI: https://doi.org/10.1007/s12275-015-5140-2
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41
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5
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Abstract
-
A xylan-degrading bacterium, designated as MS5T strain, was
isolated from soil collected from the Jeju Island, Republic
of Korea. Strain MS5T was Gram-stain-positive, aerobic,
and motile by polar flagellum. The major fatty acids identified
in this bacterium were iso-C15:0 (32.3%), C16:0 (27.3%),
and anteiso-C15:0 (10.2%). A similarity search based on the
16S rRNA gene sequence revealed that the strain belongs to
the class Bacilli and shared the highest similarity with the
type strains Bacillus beringensis BR035T (98.7%) and Bacillus
korlensis ZLC-26T (98.6%) which form a coherent cluster in
a neighbor-joining phylogenetic tree. The DNA G+C content
of strain MS5T was 43.0 mol%. The major menaquinone
was MK-7 and the diagnostic diamino acid in the cell-wall
peptidoglycan was meso-diaminopimelic acid. The DNADNA
relatedness values between strain MS5T and two closely
related species, B. beringensis BR035T and B. korlensis ZLC-
26T, were less than 70%. DNA-DNA relatedness analysis
and 16S rRNA sequence similarity, as well as phenotypic and
chemotaxonomic characteristics suggest that the strain MS5T
constitutes a novel Bacillus species, for which the name
Bacillus coreaensis sp. nov. is proposed. The type strain is
MS5T (=DSM25506T =KCTC13895T).
-
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3 Biotech.2019;[Epub] CrossRef - Molecular Characterization of Xylobiose- and Xylopentaose-Producing β-1,4-Endoxylanase SCO5931 from Streptomyces coelicolor A3(2)
Bolormaa Enkhbaatar, Chang-Ro Lee, Young-Soo Hong, Soon-Kwang Hong
Applied Biochemistry and Biotechnology.2016; 180(2): 349. CrossRef - Molecular characterization of SCO0765 as a cellotriose releasing endo-β-1,4-cellulase from Streptomyces coelicolor A(3)
Joo-Bin Hong, Vijayalakshmi Dhakshnamoorthy, Chang-Ro Lee
Journal of Microbiology.2016; 54(9): 626. CrossRef
- Arbuscular mycorrhizal fungal diversity, root colonization, and soil alkaline phosphatase activity in response to maize-wheat rotation and no-tillage in North China
-
Junli Hu , Anna Yang , Anning Zhu , Junhua Wang , Jue Dai , Ming Hung Wong , Xiangui Lin
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J. Microbiol. 2015;53(7):454-461. Published online June 27, 2015
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DOI: https://doi.org/10.1007/s12275-015-5108-2
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15
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Abstract
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Monitoring the effects of no-tillage (NT) in comparison with
conventional tillage (CT) on soil microbes could improve
our understanding of soil biochemical processes and thus
help us to develop sound management strategies. The objective
of this study was to compare the species composition and
ecological function of soil arbuscular mycorrhizal (AM) fungi
during the growth and rotation of crops under NT and CT.
From late June 2009 to early June 2010, 32 topsoil (0쭯15 cm)
samples from four individual plots per treatment (CT and
NT) were collected at both the jointing and maturation stages
of maize (Zea mays L.) and wheat (Triticum aestivum L.)
from a long-term experimental field that was established in
an Aquic Inceptisol in North China in June 2006. The AM
fungal spores were isolated and identified and then used to
calculate species diversity indices, including the Shannon-
Wiener index (H▽), Evenness (E), and Simpson’s index (D).
The root mycorrhizal colonization and soil alkaline phosphatase
activity were also determined. A total of 34 species
of AM fungi within nine genera were recorded. Compared
with NT, CT negatively affected the soil AM fungal community
at the maize sowing stage, leading to decreases in the
average diversity indices (from 2.12, 0.79, and 0.82 to 1.79,
0.72, and 0.74 for H▽, E, and D, respectively), root mycorrhizal
colonization (from 28% to 20%), soil alkaline phosphatase
activity (from 0.24 to 0.19 mg/g/24 h) and available phosphorus concentration (from 17.4 to 10.5 mg/kg) at the
maize jointing stage. However, reductions in diversity indices
of H▽, E, and D were restored to 2.20, 0.81, and 0.84,
respectively, at the maize maturation stage. CT should affect
the community again at the wheat sowing stage; however, a
similar restoration in the species diversity of AM fungi was
completed before the wheat jointing stage, and the highest
Jaccard index (0.800) for similarity in the species composition
of soil AM fungi between CT and NT was recorded at
the wheat maturation stage. Our results also demonstrated
that NT resulted in the positive protection of the community
structure of AM fungi and played an important role in maintaining
their functionality especially for maize seedlings.
-
Citations
Citations to this article as recorded by

- Enhanced Soil Fertility and Carbon Dynamics in Organic Farming Systems: The Role of Arbuscular Mycorrhizal Fungal Abundance
So Hee Park, Bo Ram Kang, Jinsook Kim, Youngmi Lee, Hong Shik Nam, Tae Kwon Lee
Journal of Fungi.2024; 10(9): 598. CrossRef - Plant and soil responses to tillage practices change arbuscular mycorrhizal fungi populations during crop growth
Jing Li, Lijuan Jia, Paul C. Struik, Zhengfeng An, Zhen Wang, Zhuwen Xu, Lei Ji, Yuqing Yao, Junjie Lv, Tao Zhou, Ke Jin
Frontiers in Microbiology.2024;[Epub] CrossRef - Rhizosphere soil microbial communities under foxtail millet continuous and rotational cropping systems and their feedback effects on foxtail millet downy mildew suppression
Lixia Xu, Huilan Yi, Aiying Zhang, Erhu Guo
Plant Growth Regulation.2023; 99(1): 161. CrossRef - Effects of different botanical oil meal mixed with cow manure organic fertilizers on soil microbial community and function and tobacco yield and quality
Yuxuan Chen, Xiaolin Lv, Yanmin Qin, Deping Zhang, Chaoqun Zhang, Zhanfeng Song, Dongyang Liu, Lianqiang Jiang, Bin Huang, Jie Wang
Frontiers in Microbiology.2023;[Epub] CrossRef - The Potential of Mycorrhizal Fungi to Increase Terrestrial Ecosystem Carbon Sink: a Review
Xue He, Wei Wang, Xiaohui Wang, Bo Zhang, Feng Shi, A. V. Kurakov, Fuqiang Song
Eurasian Soil Science.2023; 56(11): 1724. CrossRef - Alfalfa Plant Age (3 to 8 Years) Affects Soil Physicochemical Properties and Rhizosphere Microbial Communities in Saline–Alkaline Soil
Wenqiang Fan, Jiaqi Dong, Yudong Nie, Chun Chang, Qiang Yin, Mingju Lv, Qiang Lu, Yinghao Liu
Agronomy.2023; 13(12): 2977. CrossRef - Soil properties, bacterial and fungal community compositions and the key factors after 5-year continuous monocropping of three minor crops
Pu Yang, Yan Luo, Yang Gao, Xiaoli Gao, Jinfeng Gao, Pengke Wang, Baili Feng, Debarati Bhaduri
PLOS ONE.2020; 15(8): e0237164. CrossRef - Use of plant growth promoting Rhizobacteria (PGPR) and mycorrhizae to improve the growth and nutrient utilization of common bean in a soil infected with white rot fungi
Ibrahim Mohamed, Khaled E. Eid, Mohamed H.H. Abbas, Ahmed A. Salem, Nevin Ahmed, Maha Ali, Ghulam Mustafa Shah, Chen Fang
Ecotoxicology and Environmental Safety.2019; 171: 539. CrossRef - Mechanism of application nursery cultivation arbuscular mycorrhizal seedling in watermelon in the field
Lixuan Ren, Bingshuang Wang, Caipeng Yue, Shipin Zhou, Shuhuan Zhang, Hongwei Huo, Guohua Xu
Annals of Applied Biology.2019; 174(1): 51. CrossRef - No-tillage Improves Winter Wheat (Triticum Aestivum L.) Grain Nitrogen Use Efficiency
Peter Omara, Lawrence Aula, Fikayo Oyebiyi, Eva Nambi, Jagmandeep S. Dhillon, Jonathan Carpenter, William R Raun
Communications in Soil Science and Plant Analysis.2019; 50(19): 2411. CrossRef - Effect of Tillage Treatment on the Diversity of Soil Arbuscular Mycorrhizal Fungal and Soil Aggregate-Associated Carbon Content
Xingli Lu, Xingneng Lu, Yuncheng Liao
Frontiers in Microbiology.2018;[Epub] CrossRef - Soil Matrix Determines the Outcome of Interaction Between Mycorrhizal Symbiosis and Biochar for Andropogon gerardii Growth and Nutrition
Zahra Paymaneh, Milan Gryndler, Tereza Konvalinková, Oldřich Benada, Jan Borovička, Petra Bukovská, David Püschel, Veronika Řezáčová, Mehdi Sarcheshmehpour, Jan Jansa
Frontiers in Microbiology.2018;[Epub] CrossRef - Phosphorus Acquisition Efficiency Related to Root Traits: Is Mycorrhizal Symbiosis a Key Factor to Wheat and Barley Cropping?
Pedro Campos, Fernando Borie, Pablo Cornejo, Juan A. López-Ráez, Álvaro López-García, Alex Seguel
Frontiers in Plant Science.2018;[Epub] CrossRef - Agricultural practices to improve nitrogen use efficiency through the use of arbuscular mycorrhizae: Basic and agronomic aspects
Julien Verzeaux, Bertrand Hirel, Frédéric Dubois, Peter J. Lea, Thierry Tétu
Plant Science.2017; 264: 48. CrossRef - Arbuscular Mycorrhiza Stimulates Biological Nitrogen Fixation in Two Medicago spp. through Improved Phosphorus Acquisition
David Püschel, Martina Janoušková, Alena Voříšková, Hana Gryndlerová, Miroslav Vosátka, Jan Jansa
Frontiers in Plant Science.2017;[Epub] CrossRef
Journal Article
- Biotransformation of (-)-α-pinene and geraniol to α-terpineol and p-menthane-3,8-diol by the white rot fungus, Polyporus brumalis
-
Su-Yeon Lee , Seon-Hong Kim , Chang-Young Hong , Se-Yeong Park , In-Gyu Choi
-
J. Microbiol. 2015;53(7):462-467. Published online June 27, 2015
-
DOI: https://doi.org/10.1007/s12275-015-5081-9
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48
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16
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Abstract
-
In this study, the monoterpenes, α-pinene and geraniol, were
biotransformed to synthesize monoterpene alcohol compounds.
Polyporus brumalis which is classified as a white rot
fungus was used as a biocatalyst. Consequently α-terpineol
was synthesized from α-pinene by P. brumalis mycelium,
after three days. Moreover, another substrate, the acyclic
monoterpenoids geraniol was transformed into the cyclic
compound, p-menthane-3, 8-diol (PMD). The main metabolites,
i.e., α-terpineol and PMD, are known to be bioactive
monoterpene alcohol compounds. This study highlights the
potential of fungal biocatalysts for monoterpene transformation.
-
Citations
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- Biotransformation of essential oil composition of Zanthoxylum limonella by the fungus Pleopunctum pseudoellipsoideum provides the products with enhanced antimicrobial activities
Sarunpron Khruengsai, Teerapong Sripahco, Pavaret Sivapornnukul, Patcharee Pripdeevech
Process Biochemistry.2024; 136: 221. CrossRef - Biotransformation of Geraniol to Geranic Acid Using Fungus Mucor irregularis IIIMF4011
Haseena Shafeeq, Bashir Ahmad Lone, Ananta Ganjoo, Nargis Ayoub, Hema Kumari, Sumeet Gairola, Prasoon Gupta, Vikash Babu, Zabeer Ahmed
ACS Omega.2024; 9(40): 41314. CrossRef - Comparative Genome-Wide Analysis of Two Caryopteris x Clandonensis Cultivars: Insights on the Biosynthesis of Volatile Terpenoids
Manfred Ritz, Nadim Ahmad, Thomas Brueck, Norbert Mehlmer
Plants.2023; 12(3): 632. CrossRef - Fungal biotransformation of limonene and pinene for aroma production
Elison de Souza Sevalho, Bruno Nicolau Paulino, Antonia Queiroz Lima de Souza, Afonso Duarte Leão de Souza
Brazilian Journal of Chemical Engineering.2023; 40(1): 1. CrossRef - Análisis de la mezcla de alcoholes en motor diésel
Hector Riojas González, Indira Reta Heredia, Liborio Jesús Bortoni Anzures, Juan Julián Martínez Torres
Revista Colombiana de Química.2023;[Epub] CrossRef - The pinene scaffold: its occurrence, chemistry, synthetic utility, and pharmacological importance
Rogers J. Nyamwihura, Ifedayo Victor Ogungbe
RSC Advances.2022; 12(18): 11346. CrossRef - Biotransformation: A Novel Approach of Modulating and Synthesizing Compounds
Proloy Sankar Dev Roy, Brajeshwar Singh, Vikas Sharma, Chandan Thappa
Journal for Research in Applied Sciences and Biotechnology.2022; 1(2): 68. CrossRef - An update on the progress of microbial biotransformation of commercial monoterpenes
Ruchika Mittal, Gauri Srivastava, Deepak Ganjewala
Zeitschrift für Naturforschung C.2022; 77(5-6): 225. CrossRef - Plant-microbial remediation of chlorpyrifos contaminated soil
Xin Wang, Jia-wen Hou, Wen-rui Liu, Jia Bao
Journal of Environmental Science and Health, Part B.2021; 56(10): 925. CrossRef - Analgesic Potential of Terpenes Derived fromCannabis sativa
Erika Liktor-Busa, Attila Keresztes, Justin LaVigne, John M. Streicher, Tally M. Largent-Milnes, Eric Barker
Pharmacological Reviews.2021; 73(4): 1269. CrossRef - Grape and Wine Composition in Vitis vinifera L. cv. Cannonau Explored by GC-MS and Sensory Analysis
Giacomo L. Petretto, Luca Mercenaro, Pietro Paolo Urgeghe, Costantino Fadda, Antonio Valentoni, Alessandra Del Caro
Foods.2021; 10(1): 101. CrossRef - Production, Properties, and Applications of α-Terpineol
Adones Sales, Lorena de Oliveira Felipe, Juliano Lemos Bicas
Food and Bioprocess Technology.2020; 13(8): 1261. CrossRef - Biotransformation of terpene and terpenoid derivatives by Aspergillus niger NRRL 326
Cengiz Çorbacı
Biologia.2020; 75(9): 1473. CrossRef - Optimization of limonene biotransformation for the production of bulk amounts of α-terpineol
Gustavo Molina, Marina G. Pessôa, Juliano L. Bicas, Pierre Fontanille, Christian Larroche, Gláucia M. Pastore
Bioresource Technology.2019; 294: 122180. CrossRef - Biogeneration of aroma compounds
Adones Sales, Bruno Nicolau Paulino, Glaucia Maria Pastore, Juliano Lemos Bicas
Current Opinion in Food Science.2018; 19: 77. CrossRef - Transcriptomic analysis of the white rot fungus Polyporus brumalis provides insight into sesquiterpene biosynthesis
Su-Yeon Lee, Myungkil Kim, Seon-Hong Kim, Chang-Young Hong, Sun-Hwa Ryu, In-Gyu Choi
Microbiological Research.2016; 182: 141. CrossRef
Research Support, Non-U.S. Gov'ts
- Anti-tumor effect of Cordyceps militaris in HCV-infected human hepatocarcinoma 7.5 cells
-
Seulki Lee , Hwan Hee Lee , Jisung Kim , Joohee Jung , Aree Moon , Choon-Sik Jeong , Hyojeung Kang , Hyosun Cho
-
J. Microbiol. 2015;53(7):468-474. Published online June 27, 2015
-
DOI: https://doi.org/10.1007/s12275-015-5198-x
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43
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9
Crossref
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Abstract
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Cordyceps extract has been reported to have various pharmacological
activities including an anti-cancer effect. We
investigated the inhibitory effect of Cordyceps militaris on
hepatitis C virus-infected human hepatocarcinoma 7.5 cells
(J6/JFH1-huh 7.5 cells). The huh7.5 cells with or without
HCV infection were treated with various concentrations of
ethanol extract of Cordyceps militaris (CME) for 48 h and the
cytotoxicity was measured by CCK-8 assay. Both J6/JFH1-
huh7.5 cells and huh7.5 cells were highly susceptible to CME.
To examine the molecular mechanisms of the inhibitory effect
on huh7.5 cells, the effect of CME on cell apoptosis was
measured using flow cytometry and the expressions of p53,
Bim, Bax, PARP, (cleaved) caspase-9, and (cleaved) caspase-
3 in huh 7.5 cells were detected by western blot assays. CME
significantly increased early apoptosis and up-regulated the
expression of Bim, Bax, cleaved PARP, cleaved caspase 9
and cleaved caspase-3. We also found the decrease of HCV
Core or NS3 protein by CME in HCV-infected huh 7.5 cells.
-
Citations
Citations to this article as recorded by

- Visualized Nucleic Acid Hybridization Lateral Flow Strip Integrating with Microneedle for the Point-of-Care Authentication of Ophiocordyceps sinensis
Haibin Liu, Xinyue Wang, Hang Tian, Yi Yuan, Jing Wang, Yani Cheng, Linyao Sun, Hongshuo Chen, Xiaoming Song
International Journal of Molecular Sciences.2024; 25(24): 13599. CrossRef - Novel formulation development from Ophiocordyceps sinensis (Berk.) for management of high-altitude maladies
Rakhee, Jigni Mishra, Renu Bala Yadav, D. K. Meena, Rajesh Arora, R. K. Sharma, Kshipra Misra
3 Biotech.2021;[Epub] CrossRef - A new nucleoside and two new pyrrole alkaloid derivatives from Cordyceps militaris
Yafu Xue, Leilei Wu, Yulian Ding, Xinming Cui, Zhuzhen Han, Hong Xu
Natural Product Research.2020; 34(3): 341. CrossRef - Antitumor and Anti-Invasive Effect of Apigenin on Human Breast Carcinoma through Suppression of IL-6 Expression
Hwan Hee Lee, Joohee Jung, Aree Moon, Hyojeung Kang, Hyosun Cho
International Journal of Molecular Sciences.2019; 20(13): 3143. CrossRef - Cytokine-Modulated Natural Killer Cells Differentially Regulate the Activity of the Hepatitis C Virus
Yoo Cho, Hwan Lee, Hyojeung Kang, Hyosun Cho
International Journal of Molecular Sciences.2018; 19(9): 2771. CrossRef - The genus Cordyceps : An extensive review of its traditional uses, phytochemistry and pharmacology
Opeyemi Joshua Olatunji, Jian Tang, Adesola Tola, Florence Auberon, Omolara Oluwaniyi, Zhen Ouyang
Fitoterapia.2018; 129: 293. CrossRef - Systems Pharmacology-based strategy to screen new adjuvant for hepatitis B vaccine from Traditional Chinese Medicine Ophiocordyceps sinensis
Jingbo Wang, Rui Liu, Baoxiu Liu, Yan Yang, Jun Xie, Naishuo Zhu
Scientific Reports.2017;[Epub] CrossRef - Anti-Cancer Effect of Quercetin in Xenograft Models with EBV-Associated Human Gastric Carcinoma
Hwan Lee, Seulki Lee, Yu Shin, Miyeon Cho, Hyojeung Kang, Hyosun Cho
Molecules.2016; 21(10): 1286. CrossRef - Anti-tumor effect of Inonotus obliquus in xenograft animals with EBV+human gastric carcinoma
Seulki Lee, Hyosun Cho
The Korean Journal of Microbiology.2016; 52(4): 482. CrossRef
- Prevalence of avian influenza virus in wild birds before and after the HPAI H5N8 outbreak in 2014 in South Korea
-
Jeong-Hwa Shin , Chanjin Woo , Seung-Jun Wang , Jipseol Jeong , In-Jung An , Jong-Kyung Hwang , Seong-Deok Jo , Seung Do Yu , Kyunghee Choi , Hyen-Mi Chung , Jae-Hwa Suh , Seol-Hee Kim
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J. Microbiol. 2015;53(7):475-480. Published online June 27, 2015
-
DOI: https://doi.org/10.1007/s12275-015-5224-z
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43
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14
Crossref
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Abstract
-
Since 2003, highly pathogenic avian influenza (HPAI) virus
outbreaks have occurred five times in Korea, with four HPAI
H5N1 outbreaks and one HPAI H5N8 outbreak. Migratory
birds have been suggested to be the first source of HPAI in
Korea. Here, we surveyed migratory wild birds for the presence
of AI and compared regional AI prevalence in wild
birds from September 2012 to April 2014 for birds having
migratory pathways in South Korea. Finally, we investigated
the prevalence of AI in migratory birds before and after HPAI
H5N8 outbreaks. Overall, we captured 1617 migratory wild
birds, while 18,817 feces samples and 74 dead birds were collected
from major wild bird habitats. A total of 21 HPAI viruses
were isolated from dead birds, and 86 low pathogenic
AI (LPAI) viruses were isolated from captured birds and
from feces samples. Spatiotemporal distribution analysis revealed
that AI viruses were spread southward until December,
but tended to shift north after January, consistent with
the movement of migratory birds in South Korea. Furthermore,
we found that LPAI virus prevalences within wild birds
were notably higher in 2013?014 than the previous prevalence
during the northward migration season. The data from
our study demonstrate the importance of the surveillance of
AI in wild birds. Future studies including in-depth genetic
analysis in combination with evaluation of the movement
and ecology of migratory birds might help us to bridge the
gaps in our knowledge and better explain, predict, and ultimately
prevent future HPAI outbreaks.
-
Citations
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- Identification of Pre-Emptive Biosecurity Zone Areas for Highly Pathogenic Avian Influenza Based on Machine Learning-Driven Risk Analysis
Kwang-Myung Jeon, Jinwoo Jung, Chang-Min Lee, Dae-Sung Yoo
Animals.2023; 13(23): 3728. CrossRef - Prevalence, Seroprevalence and Risk Factors of Avian Influenza in Wild Bird Populations in Korea: A Systematic Review and Meta-Analysis
Eurade Ntakiyisumba, Simin Lee, Byung-Yong Park, Hyun-Jin Tae, Gayeon Won
Viruses.2023; 15(2): 472. CrossRef - The global prevalence of highly pathogenic avian influenza A (H5N8) infection in birds: A systematic review and meta-analysis
Xue-Yao Yang, Qing-Long Gong, Yan-Jin Li, Emad Beshir Ata, Man-Jie Hu, Yong-Yang Sun, Zhi-Yang Xue, Ying-Shi Yang, Xue-Pan Sun, Chun-Wei Shi, Gui-Lian Yang, Hai-Bin Huang, Yan-Long Jiang, Jian-Zhong Wang, Xin Cao, Nan Wang, Yan Zeng, Wen-Tao Yang, Chun-Fe
Microbial Pathogenesis.2023; 176: 106001. CrossRef - Avian influenza virus surveillance in wild bird in South Korea from 2019 to 2022
Eun-Jee Na, Su-Beom Chae, Jun-Soo Park, Yoon-Ji Kim, Young-Sik Kim, Jae-Ku Oem
Korean Journal of Veterinary Service.2022; 45(4): 285. CrossRef - A literature review of the use of environmental sampling in the surveillance of avian influenza viruses
Grace Hood, Xavier Roche, Aurélie Brioudes, Sophie von Dobschuetz, Folorunso Oludayo Fasina, Wantanee Kalpravidh, Yilma Makonnen, Juan Lubroth, Leslie Sims
Transboundary and Emerging Diseases.2021; 68(1): 110. CrossRef - Fine-scale tracking of wild waterfowl and their impact on highly pathogenic avian influenza outbreaks in the Republic of Korea, 2014–2015
Kyuyoung Lee, Daesung Yu, Beatriz Martínez-López, Hachung Yoon, Sung-Il Kang, Seong-Keun Hong, Ilseob Lee, Yongmyung Kang, Wooseg Jeong, Eunesub Lee
Scientific Reports.2020;[Epub] CrossRef - TARGETED RESEQUENCING OF WETLAND SEDIMENT AS A TOOL FOR AVIAN INFLUENZA VIRUS SURVEILLANCE
Chelsea G. Himsworth, Jun Duan, Natalie Prystajecky, Michelle Coombe, Waren Baticados, Agatha N. Jassem, Patrick Tang, Eric Sanders, William Hsiao
Journal of Wildlife Diseases.2020; 56(2): 397. CrossRef - The Emergence and Decennary Distribution of Clade 2.3.4.4 HPAI H5Nx
Khristine Joy C. Antigua, Won-Suk Choi, Yun Hee Baek, Min-Suk Song
Microorganisms.2019; 7(6): 156. CrossRef - A review of H5Nx avian influenza viruses
Ivette A. Nuñez, Ted M. Ross
Therapeutic Advances in Vaccines and Immunotherapy.2019;[Epub] CrossRef - Risk factors associated with highly pathogenic avian influenza subtype H5N8 outbreaks on broiler duck farms in South Korea
W.-H. Kim, J.-U. An, J. Kim, O.-K. Moon, S. H. Bae, J. B. Bender, S. Cho
Transboundary and Emerging Diseases.2018; 65(5): 1329. CrossRef - Multidimensional analysis model for highly pathogenic avian influenza using data cube and data mining techniques
Zhenshun Xu, Jonguk Lee, Daihee Park, Yongwha Chung
Biosystems Engineering.2017; 157: 109. CrossRef - Randomized, double-blind, multi-center, phase III clinical trial to evaluate the immunogenicity and safety of MG1109 (egg-based pre-pandemic influenza A/H5N1 vaccine) in healthy adults
Joon Young Song, Min Joo Choi, Ji Yun Noh, Won Suk Choi, Hee Jin Cheong, Seong-Heon Wie, Jin-Soo Lee, Gyu-Jin Woo, Sang Ho Lee, Woo Joo Kim
Human Vaccines & Immunotherapeutics.2017; 13(5): 1190. CrossRef - Emergence and dissemination of clade 2.3.4.4 H5Nx influenza viruses — how is the Asian HPAI H5 lineage maintained
Filip Claes, Subhash P Morzaria, Ruben O Donis
Current Opinion in Virology.2016; 16: 158. CrossRef - Tracking Mallards (Anas platyrhynchos) with GPS Satellite Transmitters Along Their Migration Route Through Northeast Asia
Jeong-Hwa Shin, Ki-Sup Lee, Seol-Hee Kim, Jong-Kyung Hwang, Chanjin Woo, Jiyeon Kim, Jung-Hyun Kim, Jae-Hwa Suh, Jipseol Jeong, Seung-Jun Wang, Hyen-Mi Chung, Seung-do Yu, Kyung-Hee Choi, In-Pil Mo
Avian Diseases.2016; 60(1s): 311. CrossRef
- Development of a stringent ELISA protocol to evaluate anti-viral hemorrhagic septicemia virus-specific antibodies in olive flounder Paralichthys olivaceus with improved specificity
-
Hyoung Jun Kim , Jeong Su Park , Se Ryun Kwon
-
J. Microbiol. 2015;53(7):481-485. Published online June 27, 2015
-
DOI: https://doi.org/10.1007/s12275-015-5101-9
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48
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7
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Abstract
-
Olive flounder were vaccinated with polyinosinic:polycytidylic
acid [Poly (I:C)] to prevent viral hemorrhagic septicemia
(VHS). Vaccine efficacy was verified by detection of anti-
VHS virus (VHSV) antibodies using enzyme-linked immunosorbent
assay (ELISA). In the study, ELISA absorbance values
of the negative control group [Poly (I:C)-MEM10] were saturated
when an ELISA protocol, that includes pretreatment
of the fish sera with 5% skim milk, was used. However,
the saturated OD values in the negative control did not correlate
with a specific immune response against VHSV, because
the group showed low survival rate (only 10%) following
the VHSV challenge. Also, OD values of Poly (I:C)-
VHSV group were high, and the group showed high survival
rate (97.5%) against VHSV challenge test. It was suggested
that the high OD values were possibly due to the
presence of anti-fetal bovine serum (FBS) cross-reactivity.
To compensate this, we subtracted the absorbance of infectious
hematopoietic necrosis (IHNV)-Ag plates from
those of the VHSV-Ag plates. However, the average value
for the Poly (I:C)-VHSV group (0.167) was lower than expected
even though high survival rate. We used an advanced
ELISA system to pre-treat fish sera with 5% skim milk and
two novirhabdoviruses as capture antigens as well as 50%
FBS. The corrected absorbance values for pre-treated fish
sera from the negative control Poly (I:C)-MEM10 and experimental
Poly (I:C)-VHSV groups averaged 0.033 and
0.579, respectively. The specific VHSV antibody response
of the vaccinated group was assessed using fish sera pretreated
with skim milk and FBS and by calculating the corrected
absorbance values from ELISA with two novirhabdovirus
capture antigens.
-
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- Development of an indirect ELISA for detection of the adaptive immune response of black carp (Mylopharyngodon piceus)
Tongtong Wang, Shanshan Jin, Ruoxuan Lv, Yuting Meng, Guozhong Li, Yuxing Han, Qiusheng Zhang
Journal of Immunological Methods.2023; 521: 113550. CrossRef - Detection of Salmonid IgM Specific to the Piscine Orthoreovirus Outer Capsid Spike Protein Sigma 1 Using Lipid-Modified Antigens in a Bead-Based Antibody Detection Assay
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Frontiers in Immunology.2019;[Epub] CrossRef - Production of a monoclonal antibody against of muskellunge (Esox masquinongy) IgM heavy chain and its use in development of an indirect ELISA for titrating circulating antibodies against VHSV-IVB
Mohamed Faisal, Isaac F. Standish, Mary Ann Vogelbein, Elena V. Millard, Stephen L. Kaattari
Fish & Shellfish Immunology.2019; 88: 464. CrossRef - Phylogenetic analysis and duplex RT-PCR detection of viral hemorrhagic septicemia virus in olive flounder (Paralichthys olivaceus) from Korea
Jee Youn Hwang, Seongdo Lee, Thanthrige Thiunuwan Priyathilaka, Hyerim Yang, Hyukjae Kwon, Mun Gyeong Kwon, Seong Don Hwang, Myoung-Jin Kim, Jehee Lee
Aquaculture.2018; 484: 242. CrossRef - Herpesvirus Infection Induces both Specific and Heterologous Antiviral Antibodies in Carp
Julio M. Coll
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J Cabon, L Louboutin, J Castric, S Bergmann, G Bovo, M Matras, O Haenen, N J Olesen, T Morin
Journal of Fish Diseases.2017; 40(5): 687. CrossRef - The amino-terminal domain of ORF149 of koi herpesvirus is preferentially targeted by IgM from carp populations surviving infection
F. Torrent, A. Villena, P. A. Lee, W. Fuchs, S. M. Bergmann, J. M. Coll
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