Journal of Microbiology

Journal Articles

Vaccine Development for Severe Fever with Thrombocytopenia Syndrome Virus in Dogs: Seok-Chan Park, Da-Eun Jeong, Sun-Woo Han, Joon-Seok Chae, Joo-Yong Lee, Hyun-Sook Kim, Bumseok Kim, Jun-Gu Kang; J. Microbiol. 2024;62(4):327-335. Published online April 18, 2024; DOI: https://doi.org/10.1007/s12275-024-00119-y

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Severe fever with thrombocytopenia syndrome (SFTS) is a life-threatening viral zoonosis. The causative agent of this disease is the Dabie bandavirus, which is usually known as the SFTS virus (SFTSV). Although the role of vertebrates in SFTSV transmission to humans remains uncertain, some reports have suggested that dogs could potentially transmit SFTSV to humans. Consequently, preventive measures against SFTSV in dogs are urgently needed. In the present study, dogs were immunized three times at two-week intervals with formaldehyde-inactivated SFTSV with two types of adjuvants. SFTSV (KCD46) was injected into all dogs two weeks after the final immunization. Control dogs showed viremia from 2 to 4 days post infection (dpi), and displayed white pulp atrophy in the spleen, along with a high level of terminal deoxynucleotidyl transferase-mediated dUTP nick-end labelling assay (TUNEL) positive area. However, the inactivated SFTSV vaccine groups exhibited rare pathological changes and significantly reduced TUNEL positive areas in the spleen. Furthermore, SFTSV viral loads were not detected at any of the tested dpi. Our results indicate that both adjuvants can be safely used in combination with an inactivated SFTSV formulation to induce strong neutralizing antibodies. Inactivated SFTSV vaccines effectively prevent pathogenicity and viremia in dogs infected with SFTSV. In conclusion, our study highlighted the potential of inactivated SFTSV vaccination for SFTSV control in dogs.

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The immunogenicity and protection efficacy evaluation of mRNA vaccine candidate for severe fever with thrombocytopenia syndrome in mice
Da-Eun Jeong, Jack Yoon, Baek Kim, Jun-Gu Kang, Abdallah M. Samy
PLOS Neglected Tropical Diseases.2025; 19(4): e0012999. CrossRef
Efficient and modular reverse genetics system for rapid generation of recombinant severe acute respiratory syndrome coronavirus 2
Sojung Bae, Jinjong Myoung
Journal of Microbiology.2025; 63(7): e2504015. CrossRef
Current status of severe fever with thrombocytopenia syndrome in China (Review)
Hao Sun, Quanman Hu, Saiwei Lu, Yanyan Yang, Li Zhang, Jinzhao Long, Yuefei Jin, Haiyan Yang, Shuaiyin Chen, Guangcai Duan
International Journal of Molecular Medicine.2025; 56(5): 1. CrossRef
Domain-Specific Impacts of Spike Protein Mutations on Infectivity and Antibody Escape in SARS-CoV-2 Omicron BA.1
Tae-Hun Kim, Sojung Bae, Jinjong Myoung
Journal of Microbiology and Biotechnology.2025;[Epub] CrossRef

Crystal Structures of Plk1 Polo‑Box Domain Bound to the Human Papillomavirus Minor Capsid Protein L2‑Derived Peptide: Sujin Jung , Hye Seon Lee , Ho-Chul Shin , Joon Sig Choi , Seung Jun Kim , Bonsu Ku; J. Microbiol. 2023;61(8):755-764. Published online September 8, 2023; DOI: https://doi.org/10.1007/s12275-023-00071-3

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Human papillomaviruses (HPVs) can increase the proliferation of infected cells during HPV-driven abnormalities, such as cervical cancer or benign warts. To date, more than 200 HPV genotypes have been identified, most of which are classified into three major genera: Alphapapillomavirus, Betapapillomavirus, and Gammapapillomavirus. HPV genomes commonly encode two structural (L1 and L2) and seven functional (E1, E2, E4–E7, and E8) proteins. L2, the minor structural protein of HPVs, not only serves as a viral capsid component but also interacts with various human proteins during viral infection. A recent report revealed that L2 of HPV16 recruits polo-like kinase 1 (Plk1), a master regulator of eukaryotic mitosis and cell cycle progression, for the delivery of viral DNA to mitotic chromatin during HPV16 infection. In this study, we verified the direct and potent interactions between the polo-box domain (PBD) of Plk1 and PBD-binding motif (S–S–pT–P)-containing phosphopeptides derived from L2 of HPV16/HPV18 (high-risk alphapapillomaviruses), HPV5b (low-risk betapapillomavirus), and HPV4 (low-risk gammapapillomavirus). Subsequent structural determination of the Plk1 PBD bound to the HPV18 or HPV4 L2-derived phosphopeptide demonstrated that they interact with each other in a canonical manner, in which electrostatic interactions and hydrogen bonds play key roles in sustaining the complex. Therefore, our structural and biochemical data imply that Plk1 is a broad binding target of L2 of various HPV genotypes belonging to the Alpha-, Beta-, and Gammapapillomavirus genera.

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Crystal structures of the μ2 subunit of clathrin-adaptor protein 2 in complex with peptides derived from human papillomavirus 16 E7
Sujin Jung, Dahwan Lim, Joon Sig Choi, Ho-Chul Shin, Seung Jun Kim, Bonsu Ku
Journal of Microbiology.2025; 63(8): e2505003. CrossRef

Optimization of Enterobacter cloacae (KU923381) for diesel oil degradation using Response Surface Methodology (RSM): Sugumar Ramasamy , Arumugam Arumugam , Preethy Chandran; J. Microbiol. 2017;55(2):104-111. Published online January 26, 2017; DOI: https://doi.org/10.1007/s12275-017-6265-2

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Efficiency of Enterobacter cloacae KU923381 isolated from petroleum hydrocarbon contaminated soil was evaluated in batch culture and bioreactor mode. The isolate were screened for biofilm formation using qualitative and quantitative assays. Response surface methodology (RSM) was used to study the effect of pH, temperature, glucose concentration, and sodium chloride on diesel degradation. The predicted values for diesel oil degradation efficiency by the statistical designs are in a close agreement with experimental data (R2 = 99.66%). Degradation efficiency is increased by 36.78% at pH = 7, temperature = 35°C, glucose = 5%, and sodium chloride concentration = 5%. Under the optimized conditions, the experiments were performed for diesel oil degradation by gas chromatographic mass spectrometric analysis (GC-MS). GC-MS analysis confirmed that E. cloacae had highly degrade hexadecane, heptadecane, tridecane, and docosane by 99.71%, 99.23%, 99.66%, and 98.34% respectively. This study shows that rapid bioremoval of hydrocarbons in diesel oil is acheived by E. cloacae with abet of biofilm formation. The potential use of the biofilms for preparing trickling filters (gravel particles) for the degradation of hydrocarbons from petroleum wastes before their disposal in the open environment is highly suggested. This is the first successful attempt for artificially establishing petroleum hydrocarbon degrading bacterial biofilm on solid substrates in bioreactor.

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Isolation, characterization, and hydrocarbon-degrading potentials of microorganisms from bitumen-polluted soils of Agbabu, Ondo State, Nigeria
A. A. Adewusi, O. Oyedeji, S. M. Adeyemo, O. O. Awotoye
International Journal of Environmental Science and Technology.2025; 22(14): 14417. CrossRef
Biodegradation of crude oil using bacterial strains isolated from the oil contaminated soil of Shakar Dara oil fields of Pakistan
Shahrukh Bahar, Abdul Rehman, Muhammad Saqib Malik, Iffat Naz, Muhammad Jamil, Muhammad Anees
Bioremediation Journal.2024; : 1. CrossRef
Oilfield Carbonated Produced Water Recycling Coupled to Exopolysaccharide Transformation by Lelliottia amnigena
Igor Carvalho Fontes Sampaio, Joalene de Azevedo Santos Ferreira, Pedro Jorge Louro Crugeira, Ian Mascena da Silva Oliveira, Jacson Nunes dos Santos, Josilene Borges Torres Lima Matos, Antonio Luiz Barbosa Pinheiro, Paulo Fernando de Almeida
Waste and Biomass Valorization.2024; 15(3): 1309. CrossRef
Increasing in situ bioremediation effectiveness through field-scale application of molecular biological tools
Andrew S. Madison, Skyler J. Sorsby, Yingnan Wang, Trent A. Key
Frontiers in Microbiology.2023;[Epub] CrossRef
Genomic and biotechnological potential of a novel oil-degrading strain Enterobacter kobei DH7 isolated from petroleum-contaminated soil
Muhammad Zohaib Nawaz, Chunyan Xu, Majjid A. Qaria, Syed Zeeshan Haider, Hafiz Rameez Khalid, Huda Ahmed Alghamdi, Iqrar Ahmad Khan, Daochen Zhu
Chemosphere.2023; 340: 139815. CrossRef
Bioremediation of diesel oil: potential use of bacteria consortium Lactobacillus fermentum and Clostridium beijerinckii in degrading Total Petroleum Hydrocarbon (TPH)
Naomi Oshin Laurensa Sipahutar, Lutfia Rahmiyati, Astri Rinanti, Melati Ferianita Fachrul, Astari Minarti
IOP Conference Series: Earth and Environmental Science.2023; 1239(1): 012037. CrossRef
Coupled reduction of structural Fe(III) in nontronite and oxidation of petroleum hydrocarbons
Yuan Liu, Shengbao Shi, Qiang Zeng, Yang Li, Yu Chen, Dongyi Guo, Dafu Hu, Hailiang Dong
Geochimica et Cosmochimica Acta.2023; 344: 103. CrossRef
Microbes and microbial strategies in carcinogenic polycyclic aromatic hydrocarbons remediation: a systematic review
Sandipan Banerjee, Nitu Gupta, Krishnendu Pramanik, Manash Gope, Richik GhoshThakur, Animesh Karmakar, Nayanmoni Gogoi, Raza Rafiqul Hoque, Narayan Chandra Mandal, Srinivasan Balachandran
Environmental Science and Pollution Research.2023; 31(2): 1811. CrossRef
Advanced bioremediation by an amalgamation of nanotechnology and modern artificial intelligence for efficient restoration of crude petroleum oil-contaminated sites: a prospective study
Rupshikha Patowary, Arundhuti Devi, Ashis K. Mukherjee
Environmental Science and Pollution Research.2023; 30(30): 74459. CrossRef
Enhanced petroleum removal with a novel biosurfactant producer consortium isolated from drilling cuttings of offshore Akçakoca-5 in the Black Sea
Sezen Bilen Ozyurek
Geoenergy Science and Engineering.2023; 231: 212348. CrossRef
Mycoremediation as a Potentially Promising Technology: Current Status and Prospects—A Review
Stephen Okiemute Akpasi, Ifeanyi Michael Smarte Anekwe, Emmanuel Kweinor Tetteh, Ubani Oluwaseun Amune, Hassan Oriyomi Shoyiga, Thembisile Patience Mahlangu, Sammy Lewis Kiambi
Applied Sciences.2023; 13(8): 4978. CrossRef
Potential Egyptian bacterial consortium for oil spill treatment: A laboratory simulation
Aya Elkemary, Samia S. Abouelkheir, Mostafa AbdelHakim, Soraya A. Sabry, Hanan A. Ghozlan
Case Studies in Chemical and Environmental Engineering.2023; 7: 100278. CrossRef
Use of Taguchi design for optimization of diesel-oil biodegradation using consortium of Pseudomonas stutzeri, Cellulosimicrobium cellulans, Acinetobacter baumannii and Pseudomonas balearica isolated from tarball in Terengganu Beach, Malaysia
Bruno Martins Nkem, Normala Halimoon, Fatimah Md Yusoff, Wan Lutfi Wan Johari
Journal of Environmental Health Science and Engineering.2022; 20(2): 729. CrossRef
Optimization of the Biodegradation of Aliphatic, Aromatic, and UCM Hydrocarbons from Light Crude Oil in Marine Sediment Using Response Surface Methodology (RSM)
Itzá García-Bautista, Ulises García-Cruz, Neith Pacheco, José Q. García-Maldonado, M. Leopoldina Aguirre-Macedo
Bulletin of Environmental Contamination and Toxicology.2022; 108(1): 107. CrossRef
ACTIVIDAD ANTIFÚNGICA Y CARACTERÍSTICAS DE PROMOCIÓN DE CRECIMIENTO VEGETAL DE Pseudomonas aeruginosa y Enterobacter sp. DEGRADADORAS DE HIDROCARBUROS AISLADAS DE SUELO CONTAMINADO
Luis Enrique Flores Pantoja, Everardo Briseño Silva, Pedro Damián Loeza Lara, Rafael Jiménez Mejía
Acta Biológica Colombiana.2022;[Epub] CrossRef
Rhodococcus: A promising genus of actinomycetes for the bioremediation of organic and inorganic contaminants
Mateus Torres Nazari, Viviane Simon, Bruna Strieder Machado, Larissa Crestani, Giovana Marchezi, Gustavo Concolato, Valdecir Ferrari, Luciane Maria Colla, Jeferson Steffanello Piccin
Journal of Environmental Management.2022; 323: 116220. CrossRef
Diesel degradation efficiency of Enterobacter sp., Acinetobacter sp., and Cedecea sp. isolated from petroleum waste dumping site: a bioremediation view point
Israt Jerin, Md. Sifat Rahi, Tanjia Sultan, Md. Shihabul Islam, Salek Ahmed Sajib, Kazi Md. Faisal Hoque, Md Abu Reza
Archives of Microbiology.2021; 203(8): 5075. CrossRef
Bacteria, Fungi and Microalgae for the Bioremediation of Marine Sediments Contaminated by Petroleum Hydrocarbons in the Omics Era
Filippo Dell’ Anno, Eugenio Rastelli, Clementina Sansone, Christophe Brunet, Adrianna Ianora, Antonio Dell’ Anno
Microorganisms.2021; 9(8): 1695. CrossRef
Isolation and Characterization of Oil-Degrading Enterobacter sp. from Naturally Hydrocarbon-Contaminated Soils and Their Potential Use against the Bioremediation of Crude Oil
Mukkaram Ejaz, Baowei Zhao, Xiukang Wang, Safdar Bashir, Fasih Ullah Haider, Zubair Aslam, Muhammad Imran Khan, Muhammad Shabaan, Muhammad Naveed, Adnan Mustafa
Applied Sciences.2021; 11(8): 3504. CrossRef
Biodegradation of n-alkanes in crude oil by three identified bacterial strains
Yuan Liu, Yun Yang Wan, Chunjiang Wang, Zheyu Ma, Xiaoli Liu, Shengjin Li
Fuel.2020; 275: 117897. CrossRef
Bioremoval of Acephate by biofilm-forming Enterobacter cloacae – VITDAJ8 in a vertical packed bed biofilm bioreactor
Dipti Mayee Dash, Ankita Itusha, Jabez W Osborne
Asia Pacific Journal of Molecular Biology and Biotechnology.2020; : 68. CrossRef
Rapid biodegradation and biofilm-mediated bioremoval of organophosphorus pesticides using an indigenous Kosakonia oryzae strain -VITPSCQ3 in a Vertical-flow Packed Bed Biofilm Bioreactor
Dipti Mayee Dash, W. Jabez Osborne
Ecotoxicology and Environmental Safety.2020; 192: 110290. CrossRef
Optimization of carbofuran insecticide degradation by Enterobacter sp. using response surface methodology (RSM)
Mohammed Umar Mustapha, Normala Halimoon, Wan Lutfi Wan Johari, Mohd Yunus abd shokur
Journal of King Saud University - Science.2020; 32(3): 2254. CrossRef
Hexadecane biodegradation of high efficiency by bacterial isolates from Santos Basin sediments
Vitor B. Ferrari, Augusto Cesar, Rodrigo Cayô, Rodrigo B. Choueri, Débora N. Okamoto, Juliana G. Freitas, Mariana Favero, Ana C. Gales, Cristina V. Niero, Flavia T. Saia, Suzan P. de Vasconcellos
Marine Pollution Bulletin.2019; 142: 309. CrossRef
Analysis of petroleum biodegradation by a bacterial consortium isolated from worms of the polychaeta class (Annelida): Implications for NPK fertilizer supplementation
Carla Jaqueline Silva Sampaio, José Roberto Bispo de Souza, Gilson Correia de Carvalho, Cristina Maria Quintella, Milton Ricardo de Abreu Roque
Journal of Environmental Management.2019; 246: 617. CrossRef
Potential of bacteria isolated from diesel-contaminated seawater in diesel biodegradation
Muhammad Fauzul Imron, Setyo Budi Kurniawan, Harmin Sulistiyaning Titah
Environmental Technology & Innovation.2019; 14: 100368. CrossRef
Isolation, identification, and characterization of diesel‐oil‐degrading bacterial strains indigenous to Changqing oil field, China
Wuyang Sun, Imran Ali, Jiwei Liu, Min Dai, Wenrui Cao, Mingyu Jiang, Gaowa Saren, Xinke Yu, Changsheng Peng, Iffat Naz
Journal of Basic Microbiology.2019; 59(7): 723. CrossRef
The coordinated action of RNase III and RNase G controls enolase expression in response to oxygen availability in Escherichia coli
Minho Lee, Minju Joo, Minji Sim, Se-Hoon Sim, Hyun-Lee Kim, Jaejin Lee, Minkyung Ryu, Ji-Hyun Yeom, Yoonsoo Hahn, Nam-Chul Ha, Jang-Cheon Cho, Kangseok Lee
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RNase G controls tpiA mRNA abundance in response to oxygen availability in Escherichia coli
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Kasturi Poddar, Debapriya Sarkar, Angana Sarkar
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Optimization of diesel biodegradation by Vibrio alginolyticus using Box-Behnken design
Muhammad Fauzul Imron, Harmin Sulistiyaning Titah
Environmental Engineering Research.2018; 23(4): 374. CrossRef
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Satya Sundar Mohanty, Hara Mohan Jena
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Research Support, U.S. Gov't, Non-P.H.S.

Carnobacterium maltaromaticum Infections in Feral Oncorhynchus spp. (Family Salmonidae) in Michigan: Thomas P. Loch , Rakesh Kumar , Wei Xu , Mohamed Faisal; J. Microbiol. 2011;49(5):703-713. Published online November 9, 2011; DOI: https://doi.org/10.1007/s12275-011-0527-1

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Abstract PDF: Members of the genus Oncorhynchus were introduced from the Pacific Northwest to the Laurentian Great Lakes basin and now constitute one of its most commercially and ecologically valuable fisheries. Recently, infections by a group of Gram-positive atypical lactobacilli belonging to the genus Carnobacterium have been detected in feral and captive Oncorhynchus spp. broodstock, some of which were associated with mortalities. Out of 1564 rainbow and steelhead trout (O. mykiss), coho salmon (O. kisutch), and Chinook salmon (O. tshawytscha) that were bacteriologically examined, 57 Carnobacterium spp. isolates were recovered from the kidneys, spleen, swimbladder, and/or external ulcerations of 51 infected fish. Phenotypic and biochemical characterization, as well as partial 16S rDNA sequencing and phylogenetic analyses of 30 representative isolates identified 29 as Carnobacterium maltaromaticum and 1 as C. divergens, though some phenotypic and genotypic heterogeneity was observed. Infections with C. maltaromaticum were associated with signitures typical of pseudokidney disease, but on occasion were also observed in fish displaying the gross and histopathological changes characteristic of nephrocalcinosis. While C. maltaromaticum infections were found to be widespread in both feral and farmed spawning populations of Oncorhynchus spp. residing within the Great Lakes basin, infection prevalence varied significantly according to fish species and strain, gender, and across time, but not by sampling location according to logistic regression analysis. The findings of this study further underscore the presence of phenotypic variations among Carnobacterium maltaromaticum strains that necessitate genotypic analysis to achieve definitive identification.

Research Support, Non-U.S. Gov't

Physiological and Metabolic Responses for Hexadecane Degradation in Acinetobacter oleivorans DR1: Jaejoon Jung , Jaemin Noh , Woojun Park; J. Microbiol. 2011;49(2):208-215. Published online May 3, 2011; DOI: https://doi.org/10.1007/s12275-011-0395-8

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Abstract PDF: The hexadecane degradation of Acinetobacter oleivorans DR1 was evaluated with changes in temperature and ionic salt contents. Hexadecane degradation of strain DR1 was reduced markedly by the presence of sodium chloride (but not potassium chloride). High temperature (37°C) was also shown to inhibit the motility, biofilm formation, and hexadecane biodegradation. The biofilm formation of strain DR1 on the oil-water interface might prove to be a critical physiological feature for the degradation of hexadecane. The positive relationship between biofilm formation and hexadecane degradation could be observed at 30°C, but not at low temperatures (25°C). Alterations in cell hydrophobicity and EPS production by temperature and salts were not correlated with biofilm formation and hexadecane degradation. Our proteomic analyses have demonstrated that metabolic changes through the glyoxylate pathway are important for efficient degradation of hexadecane. Proteins involved in fatty acid metabolism, gluconeogenesis, and oxidative stress defense proteins appear to be highly expressed during biodegradation of hexadecane. These results suggested that biofilm formation and oxidative stress defense are important physiological responses for hexadecane degradation along with metabolic switch to glyoxylate pathway in strain DR1.

Journal Article

Monitoring Nutrient Impact on Bacterial Community Composition during Bioremediation of Anoxic PAH-Contaminated Sediment: Myungsu Kim , Seung Seob Bae , Mijin Seol , Jung-Hyun Lee , Young-Sook Oh; J. Microbiol. 2008;46(6):615-623. Published online December 24, 2008; DOI: https://doi.org/10.1007/s12275-008-0097-z

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Marine harbor sediments are frequently polluted with significant amount of polycyclic aromatic hydrocarbons (PAHs) some of which are naturally toxic, recalcitrant, mutagenic, and carcinogenic. To stimulate biodegradation of PAHs in PAH-contaminated sediments collected from near Gwangyang Bay, Korea, lactate was chosen as a supplementary carbonaceous substrate. Sediment packed into 600 ml air-tight jar was either under no treatment condition or lactate amended condition (1%, w/v). Microbial community composition was monitored by bacteria-specific and archaea-specific PCR-terminal restriction fragment length polymorphism (T-RFLP), in addition to measuring the residual PAH concentration. Results showed that lactate amendment enhanced biodegradation rate of PAHs in the sediment by 4 to 8 times, and caused a significant shift in archaebacterial community in terms of structure and diversity with time. Phylogenetic analysis of 23 archaeal clones with distinctive RFLP patterns among 288 archaeal clones indicated that majority of the archaeal members were closest to unculturable environmental rDNA clones from hydrocarbon-contaminated and/or methanogenesis-bearing sediments. Lactate amendment led to the enrichment of some clones that were most closely related to PAH-degrading Methanosarcina species. These results suggest a possible contribution of methanogenic community to PAH degradation and give us more insights on how to effectively remediate PAH-contaminated sediments.

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Effects of electron acceptors and donors on anaerobic biodegradation of PAHs in marine sediments
Qingguo Chen, Zhenzhen Li, Yu Chen, Mei Liu, Qiao Yang, Baikang Zhu, Jun Mu, Lijuan Feng, Zhi Chen
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Reviews

REVIEW] Dinoflagellates, Diatoms, and Their Viruses: Keizo Nagasaki; J. Microbiol. 2008;46(3):235-243. Published online July 5, 2008; DOI: https://doi.org/10.1007/s12275-008-0098-y

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Since the first discovery of the very high virus abundance in marine environments, a number of researchers were fascinated with the world of “marine viruses”, which had previously been mostly overlooked in studies on marine ecosystems. In the present paper, the possible role of viruses infecting marine eukaryotic microalgae is enlightened, especially summarizing the most up-to-the-minute information of marine viruses infecting bloom-forming dinoflagellates and diatoms. To author’s knowledge, ~40 viruses infecting marine eukaryotic algae have been isolated and characterized to different extents. Among them, a double-stranded DNA (dsDNA) virus “HcV” and a single-stranded RNA (ssRNA) virus “HcRNAV” are the only dinoflagellate-infecting (lytic) viruses that were made into culture; their hosts are a bivalve-killing dinoflagellate Heterocapsa circularisquama. In this article, ecological relationship between H. circularisquama and its viruses is focused. On the other hand, several diatom-infecting viruses were recently isolated and partially characterized; among them, one is infectious to a pen-shaped bloom-forming diatom species Rhizosolenia setigera; some viruses are infectious to genus Chaetoceros which is one of the most abundant and diverse diatom group. Although the ecological relationships between diatoms and their viruses have not been sufficiently elucidated, viral infection is considered to be one of the significant factors affecting dynamics of diatoms in nature. Besides, both the dinoflagellate-infecting viruses and diatom-infecting viruses are so unique from the viewpoint of virus taxonomy; they are remarkably different from any other viruses ever reported. Studies on these viruses lead to an idea that ocean may be a treasury of novel viruses equipped with fascinating functions and ecological roles.

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Minireview] Alpine Microorganisms: Useful Tools for Low-Temperature Bioremediation: Rosa Margesin; J. Microbiol. 2007;45(4):281-285.; DOI: https://doi.org/2572 [pii]

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Abstract PDF: Cold environments, including polar and alpine regions, are colonized by a wide diversity of microorganisms able to thrive at low temperatures. There is evidence of a wide range of metabolic activities in alpine cold ecosystems. Like polar microorganisms, alpine microorganisms play a key ecological role in their natural habitats for nutrient cycling, litter degradation, and many other processes. A number of studies have demonstrated the capacity of alpine microorganisms to degrade efficiently a wide range of hydrocarbons, including phenol, phenol-related compounds and petroleum hydrocarbons, and the feasibility of low-temperature bioremediation of European alpine soils by stimulating the degradation capacity of indigenous microorganisms has also been shown.

Research Support, Non-U.S. Gov't

Biodegradation of Hydrocarbon Contamination by Immobilized Bacterial Cells: Raja Noor Zaliha Abd. Rahman , Farinazleen Mohamad Ghazali , Abu Bakar Salleh , Mahiran Basri; J. Microbiol. 2006;44(3):354-359.; DOI: https://doi.org/2376 [pii]

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Abstract PDF: This study examined the capacity of immobilized bacteria to degrade petroleum hydrocarbons. A mixture of hydrocarbon-degrading bacterial strains was immobilized in alginate and incubated in crude oil-contaminated artificial seawater (ASW). Analysis of hydrocarbon esidues following a 30-day incubation period demonstrated that the biodegradation capacity of the microorganisms was not compromised by the immobilization. Removal of n-alkanes was similar in immobilized cells and control cells. To test reusability, the immobilized bacteria were incubated for sequential increments of 30 days. No decline in biodegradation capacity of the immobilized consortium of bacterial cells was noted over its repeated use. We conclude that immobilized hydrocarbon-degrading bacteria represent a promising application in the bioremediation of hydrocarbon-contaminated areas.

Published Erratum

Erratum to: Fungal Catastrophe of a Specimen Room: Just One Week is Enough to Eradicate Traces of Thousands of Animals: Ji Seon Kim , Yoonhee Cho , Chang Wan Seo , Ki Hyeong Park , Shinnam Yoo , Jun Won Lee , Sung Hyun Kim , Wonjun Lee , Young Woon Lim; J. Microbiol. 2023;61(6):653-653.; DOI: https://doi.org/10.1007/s12275-023-00060-6

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Abstract PDF: Correction to: Journal of Microbiology (2023) 61:189–197 https://doi.org/10.1007/s12275-023-00017-9 In this article two author names are given erroneaously: Written incorrectly: Ki Hyung Park · Shin Nam Yoo It should be read: Ki Hyeong Park · Shinnam Yoo

Emulsification of crude oil by acinetobacter sp. SH-14: Son, Hong Joo , Go, Sun Hee , Lee, Geon , Lee, Sang Joon; J. Microbiol. 1996;34(4):363-369.

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Abstract PDF: As basic study to evaluate the treatability of oil-contaminated environment with bacteria, isolation and characterization of crude oil-degrading bacterium were carried out. A bacterial strain SH-14 capable of degrading crude oil was isolated from contaminated soils by enrichment culture technique and identified as Acinetobacter sp. by morphological, cultural and biochemical characteristics, and so named Acinetobacter sp. SH-14. The optimal medium composition and cultural conditions for the growth and emulsification of crude oil by Acinetobacter sp. SH-14 used were crude oil of 2.0%, KNO of 0.2%, K₂HPO₄of 0.05%, and MgSO₄· 7H₂O of 1.0%, along with initial pH 7.0at 30℃. Acinetobacter sp. SH-14 showed to be resistant to chloramphenicol and utilized various hydrocarbons such as dodecane, hexadecane, isooctane, cyclo-hexane etc., as a sole carbon source. Acinetobacter sp. SH-14 harbored a single plasmid. By agarose gel electrophoresis and curing experiment it was found that the genes for crude oil components degradation were encoded on the plasmid.

Characterization of BTX-degrading bacteria and identification of substrate interactions during their degradation: Oh, Young Sook , Choi, Sung Chan; J. Microbiol. 1997;35(3):193-199.

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Abstract PDF: From several industrial wastewaters, 14 bacterial strains which degrade benzene, toluene, o-xylene, m-xylene, or p-xylene (BTX) were obtained. These strains were characterized as to their species composition and the substrate range, kinetic parameters and the substrate interactions were investigated. Although BTX components have a similar chemical structure, isolated strains showed different substrate ranges and kinetic parameters. None of the strains could degrade all of BTX components and most of them showed an inhibition (Haldane) kinetics on BTX, BTX mixtures were removed under inhibitory substrate interactions with variation in the intensity of inhibition. For a complete degradation of BTX, a defined mixed culture containing three different types of pathways was constructed and all of the BTX components were simultaneously degraded with the total removal rate of 225.69 mg/g biomass/h Judging from the results, the obtained mixed culture seems to be useful for the treatment of BTX-contaminated wastewater or groundwater as well as for the removal of BTX from the contaminated air stream.

Cloning and Expression in E. coli of the Genes Responsible for Degradation of 4-Chlorobenzoate and 4-Chlorocatechol drom Pseudomonas sp. Strain S-47: Kim, Ki Pil , Seo, Dong In , Lee, Dong Hun , Kim, Young Soo , Kim, Chi Kyung; J. Microbiol. 1998;36(2):99-105.

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Abstract PDF: Pseudomonas sp. strain S-47 can grow on 4-chlorobenzoate (4CBA) and transform 4CBA to 4-chlorocatechol (4CC) under aerobic conditions, which is subsequently degraded to produce 2-hydroxypent-2, 4-dienoate (2H-2,4DA). The upper steps for conversion of 4CBA to 4CC are recognized to be conducted by the benzoate-1,2-dioxygenase (B12O) system encoded by benABC and benD. The ensving meta-cleabage reaction of 4CC is catalyzed by catechol 2,3-dioxygenase(C23O) encoded by the xylE gene. The benABCD and the xylE genes were cloned from the chromosome of Pseudomonas sP. S-47 into pCS1(48.7kb), pCS101(24.4kb), pCS201(17.7kb), and pCS202(6.7kb) recombinant plasmids, and were well ecpressed in E. coli XL1-Blue host cells. The PstI-insert (4.0kb) of pC202 was found to contain the benABCD and cylE genes and to have 2 EcoRV, 1 SphI, and 3 SacII restriction sites.

Identification and Characterization of an Oil-degrading Yeast, Yarrowia lipolytica 180: Kim, Tae Hyun+ , Lee, Jung-Hyun , Oh, Young Sook , Bae, Kyung Sook , Kim, Sang Jin; J. Microbiol. 1999;37(3):128-135.

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Abstract PDF: Among oil-degrading microorganisms isolated from oil-polluted industrial areas, one yeast strain showed high degradation activity of aliphatic hydrocarbons. From the analyses of 18S rRNA sequences, fatty acid, coenzyme Q system, G+C content of DNA, and biochemical characteristics, the strain was identified as Yarrowia lipolytica 180. Y. lipolytica 180 degraded 94% of aliphatic hydrocarbons in minimal salts medium containing 0.2% (v/v) of Arabian light crude oil within 3 days at 25℃. Optimal growth conditions for temperature, pH, NaCl concentration, and crude oil concentration were 30℃, pH 5-7, 1%, and 2% (v/v), respectively. Y. lipolytica 180 reduced surface tension when cultured on hydrocarbon substrates (1%, v/v), and the measured values of the surface tension were in the range of 51 to 57 dynes/cm. Both the cell free culture broth and cell debris of Y. lipolytica 180 were capable of emulsifying 2% (v/v) crude oil by itself. They were also capable of degrading crude oil (2%). The strain showed a cell surface hydrophobicity higher than 90%, which did not require hydrocarbon substrates for its induction. These results suggest that Y. lipolytica has high oil-degrading activity through its high emulsifying activity and cell hydrophobicity, and further indicate that the cell surface is responsible for the metabolism of aliphatic hydrocarbons.

Construction of a Bioluminescent Reporter Using the luc Gene and meta-Cleavage Dioxygenase Promoter for Detection of Catecholic Compounds: Sang-Ho Park , Dong-Hun Lee , Kye-Heon Oh , Chi-Kyung Kim; J. Microbiol. 2000;38(3):183-186.

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Abstract PDF: Several types of bioluminescent reporter strains have been developed for the detection and monitoring of pollutant aromatics contaminating the environment. In this study, a bioluminescent reporter strain, E. coli SHP3, was constructed by fusing the luc gene of firefly luciferase with the promoter of pcbC responsible for the meta-cleavage of aromatic hydrocarbons. The bioluminescence expressed by the luc gene in the reporter was well triggered by the promoter when it was exposed to 2,3-dihydroxybiphenyl (2,3-DHBP) at 0.5 to 1 mM concentrations. The bioluminescent response was more extensive when the reporter strain was exposed to 5 mM catechol and 2 mM 4-chlorocatechol. These different types of bioluminescent responses by E. coli SHP3 appeared to be characterized by the nature of the aromatics to stress. Since E. coli SHP3 responded to 2,3-DHBP quite sensitively, this reporter strain could be applied for detecting some catecholic pollutants.

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