Full articles
- Pycnogenol reduces the expression of P. aeruginosa T3SS and inflammatory response in NCI-H292 cells
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Seung-Ho Kim, Da Yun Seo, Sang-Bae Han, Un-Hwan Ha, Ji-Won Park, Kyung-Seop Ahn
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J. Microbiol. 2025;63(10):2503004. Published online September 19, 2025
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DOI: https://doi.org/10.71150/jm.2503004
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Nosocomial infections caused by Pseudomonas aeruginosa (P. aeruginosa) have become increasingly common, particularly among immunocompromised individuals, who experience high mortality rates and prolonged treatment durations due to the limited availability of effective therapies. In this study, we screened for anti-ExoS compounds targeting P. aeruginosa and identified pycnogenol (PYC) as a potent inhibitor of the type III secretion system (T3SS), a major virulence mechanism responsible for the translocation of effectors such as ExoS. Using ELISA, western blotting, and real-time PCR analyses in both P. aeruginosa and infected H292 cells, we found that PYC significantly reduced T3SS activity. Mechanistically, PYC suppressed the transcription of T3SS-related genes by downregulating exsA expression in P. aeruginosa. Furthermore, pretreatment with PYC attenuated the cytotoxic effects and reduced the expression of proinflammatory cytokines, including interleukin-1β (IL-1β), interleukin-6 (IL-6), interleukin-8 (IL-8), and interleukin-18 (IL-18), in P. aeruginosa-infected H292 cells. These effects were associated with the inhibition of NF-κB signaling and inflammasome activation. Taken together, our findings suggest that PYC may serve as a promising therapeutic candidate against P. aeruginosa infections by targeting T3SS-mediated virulence and modulating host inflammatory responses.
- Alizarin, which reduces ExoS, attenuates inflammation by P. aeruginosa in H292 cells
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Seung-Ho Kim, Hye In Ahn, Jae-Hoon Oh, Da Yun Seo, Jung-Hee Kim, Ok-kyoung Kwon, Ji-Won Park, Kyung-Seop Ahn
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J. Microbiol. 2025;63(5):e2411012. Published online May 27, 2025
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DOI: https://doi.org/10.71150/jm.2411012
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Pseudomonas aeruginosa (P. aeruginosa) is resistant to several drugs as well as antibiotics and is thus classified as multidrug resistant and extensively drug resistant. These bacteria have a secretion system called the "type 3 secretion system (T3SS)", which facilitates infection by delivering an effector protein. ExoenzymeS (ExoS) is known to induce cell death and activate caspase-1. In particular, patients infected with P. aeruginosa develop diseases associated with high mortality, such as pneumonia, because no drug targets an ExoS or T3SS. We selected natural compounds to treat T3SS-mediated pneumonia and chose alizarin, a red dye. We confirmed the effects of alizarin on T3SS by bacterial PCR and ELISA. It was confirmed that alizarin regulates ExoS by inhibiting exsA but also popD and pscF. Furthermore, in infected H292 cells, it not only attenuates inflammation by inhibiting lipopolysaccharide (LPS)-induced phosphorylation of nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB) p65 but also interferes with the level of ExoS delivered into the host and modulates caspase-1. We confirmed this result and determined that it led to decreases in proinflammatory cytokines such as Interleukin-1beta (IL-1β), Interleukin-6 (IL-6), and Interleukin-18 (IL-18). Therefore, we suggest that alizarin is a suitable drug for treating pneumonia caused by P. aeruginosa because it helps to attenuate inflammation by regulating T3SS and NF-κB signaling.
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- Beyond pathogenicity: applications of the type III secretion system (T3SS) of Pseudomonas aeruginosa
Tianqi Su, Lin Zhang, Jie Shen, Danyu Qian, Yulei Guo, Zhenpeng Li
Frontiers in Microbiology.2025;[Epub] CrossRef
Protocol
- A guide to genome mining and genetic manipulation of biosynthetic gene clusters in Streptomyces
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Heonjun Jeong, YeonU Choe, Jiyoon Nam, Yeon Hee Ban
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J. Microbiol. 2025;63(4):e2409026. Published online April 29, 2025
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DOI: https://doi.org/10.71150/jm.2409026
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Streptomyces are a crucial source of bioactive secondary metabolites with significant clinical applications. Recent studies of bacterial and metagenome-assembled genomes have revealed that Streptomyces harbors a substantial number of uncharacterized silent secondary metabolite biosynthetic gene clusters (BGCs). These BGCs represent a vast diversity of biosynthetic pathways for natural product synthesis, indicating significant untapped potential for discovering new metabolites. To exploit this potential, genome mining using comprehensive strategies that leverage extensive genomic databases can be conducted. By linking BGCs to their encoded products and integrating genetic manipulation techniques, researchers can greatly enhance the identification of new secondary metabolites with therapeutic relevance. In this context, we present a step-by-step guide for using the antiSMASH pipeline to identify secondary metabolite-coding BGCs within the complete genome of a novel Streptomyces strain. This protocol also outlines gene manipulation methods that can be applied to Streptomyces to activate cryptic clusters of interest and validate the functions of biosynthetic genes. By following these guidelines, researchers can pave the way for discovering and characterizing valuable natural products.
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- A review of geomicrobial bioprospecting strategies for novel therapeutic discovery from Earth’s extreme environments
Trideep Saikia, Sandipan Das
Discover Geoscience.2025;[Epub] CrossRef
Research Article
- Enoxacin adversely affects Salmonella enterica virulence and host pathogenesis through interference with type III secretion system type II (T3SS-II) and disruption of translocation of Salmonella Pathogenicity Island-2 (SPI2) effectors
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El-Sayed Khafagy, Gamal A. Soliman, Maged S. Abdel-Kader, Mahmoud M. Bendary, Wael A. H. Hegazy, Momen Askoura
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J. Microbiol. 2025;63(2):e2410015. Published online February 27, 2025
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DOI: https://doi.org/10.71150/jm.2410015
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Salmonella enterica is a clinically significant oro-fecal pathogen that causes a wide variety of illnesses and can lead to epidemics. S. enterica expresses a lot of virulence factors that enhance its pathogenesis in host. For instance, S. enterica employs a type three secretion system (T3SS) to translocate a wide array of effector proteins that could change the surrounding niche ensuring suitable conditions for the thrive of Salmonella infection. Many antimicrobials have been recently introduced to overcome the annoying bacterial resistance to antibiotics. Enoxacin is member of the second-generation quinolones that possesses a considerable activity against S. enterica. The present study aimed to evaluate the effect of enoxacin at sub-minimum inhibitory concentration (sub-MIC) on S. enterica virulence capability and pathogenesis in host. Enoxacin at sub-MIC significantly diminished both Salmonella invasion and intracellular replication within the host cells. The observed inhibitory effect of enoxacin on S. enterica internalization could be attributed to its ability to interfere with translocation of the T3SS effector proteins. These results were further confirmed by the finding that enoxacin at sub-MIC down-regulated the expression of the genes encoding for T3SS-type II (T3SS-II). Moreover, enoxacin at sub-MIC lessened bacterial adhesion to abiotic surface and biofilm formation which indicates a potential anti-virulence activity. Importantly, in vivo results showed a significant ability of enoxacin to protect mice against S. enterica infection and decreased bacterial colonization within animal tissues. In nutshell, current findings shed light on an additional mechanism of enoxacin at sub-MIC by interfering with Salmonella intracellular replication. The outcomes presented herein could be further invested in conquering bacterial resistance and open the door for additional effective clinical applications.
Journal Articles
- Comparative Secretory Efficiency of Two Chitosanase Signal Peptides from Bacillus subtilis in Escherichia coli
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Tae-Yang Eom, Yehui Gang, Youngdeuk Lee, Yoon-Hyeok Kang, Eunyoung Jo, Svini Dileepa Marasinghe, Heung Sik Park, Gun-Hoo Park, Chulhong Oh
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J. Microbiol. 2024;62(12):1155-1164. Published online November 25, 2024
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DOI: https://doi.org/10.1007/s12275-024-00186-1
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The production of recombinant proteins in Escherichia coli is often challenged by cytoplasmic expression due to proteolytic degradation and inclusion body formation. Extracellular expression can overcome these problems by simplifying downstream processing and improving protein yields. This study aims to compare the efficiency of two Bacillus subtilis chitosanase signal peptides in mediating extracellular secretion in E. coli. We identified a naturally occurring mutant signal peptide (mCsn2-SP) from B. subtilis CH2 chitosanase (CH2CSN), which is characterized by a deletion of six amino acids in the N-region relative to the signal peptide (Csn1-SP) from B. subtilis CH1 chitosanase (CH1CSN). The CH1CSN and CH2CSN genes were cloned into the pET-11a vector and protein secretion was evaluated in E. coli BL21(DE3) host cells. Expression was induced with 0.1 mM and 1 mM isopropyl β-D-1-thiogalactopyranoside (IPTG) at 30 °C for one and three days. CH2CSN showed higher secretion levels compared to CH1CSN under all experimental conditions, especially with 0.1 mM IPTG induction for 3 days, which resulted in a 2.37-fold increase in secretion. Furthermore, it was demonstrated that mCsn2-SP is capable of secreting human Cu,Zn-superoxide dismutase (hSOD) in E. coli BL21(DE3) and successfully translocating it to the periplasmic region.
This study represents the inaugural investigation into the utilisation of a naturally modified signal peptide, thereby corroborating the assertion that signal peptide deletion variants can influence protein secretion efficiency.
Furthermore, the findings substantiate the proposition that such variants can serve as a viable alternative for the secretion of heterologous proteins in E.
coli.
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- Signal Peptides: From Molecular Mechanisms to Applications in Protein and Vaccine Engineering
Shuai Zhang, Zhihui He, Hui Wang, Jingbo Zhai
Biomolecules.2025; 15(6): 897. CrossRef
- Deletion of IRC19 Causes Defects in DNA Double-Strand Break Repair Pathways in Saccharomyces cerevisiae
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Ju-Hee Choi, Oyungoo Bayarmagnai, Sung-Ho Bae
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J. Microbiol. 2024;62(9):749-758. Published online July 12, 2024
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DOI: https://doi.org/10.1007/s12275-024-00152-x
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DNA double-strand break (DSB) repair is a fundamental cellular process crucial for maintaining genome stability, with homologous recombination and non-homologous end joining as the primary mechanisms, and various alternative pathways such as single-strand annealing (SSA) and microhomology-mediated end joining also playing significant roles under specific conditions. IRC genes were previously identified as part of a group of genes associated with increased levels of Rad52 foci in Saccharomyces cerevisiae. In this study, we investigated the effects of IRC gene mutations on DSB repair, focusing on uncharacterized IRC10, 19, 21, 22, 23, and 24. Gene conversion (GC) assay revealed that irc10Δ, 22Δ, 23Δ, and 24Δ mutants displayed modest increases in GC frequencies, while irc19Δ and irc21Δ mutants exhibited significant reductions. Further investigation revealed that deletion mutations in URA3 were not generated in irc19Δ mutant cells following HO-induced DSBs. Additionally, irc19Δ significantly reduced frequency of SSA, and a synergistic interaction between irc19Δ and rad52Δ was observed in DSB repair via SSA. Assays to determine the choice of DSB repair pathways indicated that Irc19 is necessary for generating both GC and deletion products. Overall, these results suggest a potential role of Irc19 in DSB repair pathways, particularly in end resection process.
- Vaccine Development for Severe Fever with Thrombocytopenia Syndrome Virus in Dogs
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Seok-Chan Park, Da-Eun Jeong, Sun-Woo Han, Joon-Seok Chae, Joo-Yong Lee, Hyun-Sook Kim, Bumseok Kim, Jun-Gu Kang
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J. Microbiol. 2024;62(4):327-335. Published online April 18, 2024
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DOI: https://doi.org/10.1007/s12275-024-00119-y
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Severe fever with thrombocytopenia syndrome (SFTS) is a life-threatening viral zoonosis. The causative agent of this disease is the Dabie bandavirus, which is usually known as the SFTS virus (SFTSV). Although the role of vertebrates in SFTSV transmission to humans remains uncertain, some reports have suggested that dogs could potentially transmit SFTSV to humans. Consequently, preventive measures against SFTSV in dogs are urgently needed. In the present study, dogs were immunized three times at two-week intervals with formaldehyde-inactivated SFTSV with two types of adjuvants. SFTSV (KCD46) was injected into all dogs two weeks after the final immunization. Control dogs showed viremia from 2 to 4 days post infection (dpi), and displayed white pulp atrophy in the spleen, along with a high level of terminal deoxynucleotidyl transferase-mediated dUTP nick-end labelling assay (TUNEL) positive area. However, the inactivated SFTSV vaccine groups exhibited rare pathological changes and significantly reduced TUNEL positive areas in the spleen. Furthermore, SFTSV viral loads were not detected at any of the tested dpi. Our results indicate that both adjuvants can be safely used in combination with an inactivated SFTSV formulation to induce strong neutralizing antibodies. Inactivated SFTSV vaccines effectively prevent pathogenicity and viremia in dogs infected with SFTSV. In conclusion, our study highlighted the potential of inactivated SFTSV vaccination for SFTSV control in dogs.
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- The immunogenicity and protection efficacy evaluation of mRNA vaccine candidate for severe fever with thrombocytopenia syndrome in mice
Da-Eun Jeong, Jack Yoon, Baek Kim, Jun-Gu Kang, Abdallah M. Samy
PLOS Neglected Tropical Diseases.2025; 19(4): e0012999. CrossRef - Efficient and modular reverse genetics system for rapid generation of recombinant severe acute respiratory syndrome coronavirus 2
Sojung Bae, Jinjong Myoung
Journal of Microbiology.2025; 63(7): e2504015. CrossRef - Current status of severe fever with thrombocytopenia syndrome in China (Review)
Hao Sun, Quanman Hu, Saiwei Lu, Yanyan Yang, Li Zhang, Jinzhao Long, Yuefei Jin, Haiyan Yang, Shuaiyin Chen, Guangcai Duan
International Journal of Molecular Medicine.2025; 56(5): 1. CrossRef - Domain-Specific Impacts of Spike Protein Mutations on Infectivity and Antibody Escape in SARS-CoV-2 Omicron BA.1
Tae-Hun Kim, Sojung Bae, Jinjong Myoung
Journal of Microbiology and Biotechnology.2025;[Epub] CrossRef
Review
- Temperature Matters: Bacterial Response to Temperature Change
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Seongjoon Moon , Soojeong Ham , Juwon Jeong , Heechan Ku , Hyunhee Kim , Changhan Lee
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J. Microbiol. 2023;61(3):343-357. Published online April 3, 2023
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DOI: https://doi.org/10.1007/s12275-023-00031-x
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1,355
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Temperature is one of the most important factors in all living organisms for survival. Being a unicellular organism, bacterium
requires sensitive sensing and defense mechanisms to tolerate changes in temperature. During a temperature shift,
the structure and composition of various cellular molecules including nucleic acids, proteins, and membranes are affected.
In addition, numerous genes are induced during heat or cold shocks to overcome the cellular stresses, which are known as
heat- and cold-shock proteins. In this review, we describe the cellular phenomena that occur with temperature change and
bacterial responses from a molecular perspective, mainly in Escherichia coli.
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Aquaculture Reports.2024; 36: 102128. CrossRef - Global biochemical profiling of fast-growing Antarctic bacteria isolated from meltwater ponds by high-throughput FTIR spectroscopy
Volha Akulava, Valeria Tafintseva, Uladzislau Blazhko, Achim Kohler, Uladzislau Miamin, Leonid Valentovich, Volha Shapaval, Marcos Pileggi
PLOS ONE.2024; 19(6): e0303298. CrossRef - Phyletic patterns of bacterial growth temperature in Pseudomonas and Paenibacillus reveal gradual and sporadic evolution towards cold adaptation
Kihyun Lee, Seong-Hyeon Kim, Seongjoon Moon, Sangha Kim, Changhan Lee
ISME Communications.2024;[Epub] CrossRef - Bacterial Regulatory Mechanisms for the Control of Cellular Processes: Simple Organisms’ Complex Regulation
Jin-Won Lee
Journal of Microbiology.2023; 61(3): 273. CrossRef
Journal Article
- Relaxed Cleavage Specificity of Hyperactive Variants of Escherichia coli RNase E on RNA I
-
Dayeong Bae , Hana Hyeon , Eunkyoung Shin , Ji , Kangseok Lee
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J. Microbiol. 2023;61(2):211-220. Published online February 22, 2023
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DOI: https://doi.org/10.1007/s12275-023-00013-z
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334
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1
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1
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Abstract
PDF
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RNase E is an essential enzyme in Escherichia coli. The cleavage site of this single-stranded specific endoribonuclease is
well-characterized in many RNA substrates. Here, we report that the upregulation of RNase E cleavage activity by a mutation
that affects either RNA binding (Q36R) or enzyme multimerization (E429G) was accompanied by relaxed cleavage specificity.
Both mutations led to enhanced RNase E cleavage in RNA I, an antisense RNA of ColE1-type plasmid replication,
at a major site and other cryptic sites. Expression of a truncated RNA I with a major RNase E cleavage site deletion at the
5′-end (RNA I-
5) resulted in an approximately twofold increase in the steady-state levels of RNA I-
5 and the copy number
of ColE1-type plasmid in E. coli cells expressing wild-type or variant RNase E compared to those expressing RNA I. These
results
indicate that RNA I-
5 does not efficiently function as an antisense RNA despite having a triphosphate group at the
5′-end, which protects the RNA from ribonuclease attack. Our study suggests that increased cleavage rates of RNase E lead
to relaxed cleavage specificity on RNA I and the inability of the cleavage product of RNA I as an antisense regulator in vivo
does not stem from its instability by having 5′-monophosphorylated end.
-
Citations
Citations to this article as recorded by

- Engineering an Escherichia coli based in vivo mRNA manufacturing platform
Edward Curry, George Muir, Jixin Qu, Zoltán Kis, Martyn Hulley, Adam Brown
Biotechnology and Bioengineering.2024; 121(6): 1912. CrossRef
Meta-Analysis
- Proposal of a health gut microbiome index based on a meta-analysis of Korean and global population datasets
-
Hyun-Seok Oh , Uigi Min , Hyejin Jang , Namil Kim , Jeongmin Lim , Mauricio Chalita , Jongsik Chun
-
J. Microbiol. 2022;60(5):533-549. Published online March 31, 2022
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DOI: https://doi.org/10.1007/s12275-022-1526-0
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454
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11
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10
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Abstract
PDF
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The disruption of the human gut microbiota has been linked
to host health conditions, including various diseases. However,
no reliable index for measuring and predicting a healthy microbiome
is currently available. Here, the sequencing data of
1,663 Koreans were obtained from three independent studies.
Furthermore, we pooled 3,490 samples from public databases
and analyzed a total of 5,153 fecal samples. First, we analyzed
Korean gut microbiome covariates to determine the influence
of lifestyle on variation in the gut microbiota. Next, patterns
of microbiota variations across geographical locations and
disease statuses were confirmed using a global cohort and disease
data. Based on comprehensive comparative analysis, we
were able to define three enterotypes among Korean cohorts,
namely, Prevotella type, Bacteroides type, and outlier type.
By a thorough categorization of dysbiosis and the evaluation
of microbial characteristics using multiple datasets, we identified
a wide spectrum of accuracy levels in classifying health
and disease states. Using the observed microbiome patterns,
we devised an index named the gut microbiome index (GMI)
that could consistently predict health conditions from human
gut microbiome data. Compared to ecological metrics, the
microbial marker index, and machine learning approaches,
GMI distinguished between healthy and non-healthy individuals
with a higher accuracy across various datasets. Thus,
this study proposes a potential index to measure health status
of gut microbiome that is verified from multiethnic data
of various diseases, and we expect this model to facilitate further
clinical application of gut microbiota data in future.
-
Citations
Citations to this article as recorded by

- Methodology for Assessing Patient Centricity and Data Integrity in Clinical Trials With Decentralized Elements: A Pilot Trial on Mastic Gum
Jiyeon Park, Ki Young Huh, Jae‐Yong Chung, Kyung‐Sang Yu
Clinical and Translational Science.2025;[Epub] CrossRef - A comparison of the prevalence of respiratory pathogens and opportunistic respiratory pathogenic profile of ‘clean’ and ‘unclean’ removable dental prostheses
Tong Wah Lim, Shi Huang, Yufeng Zhang, Michael Francis Burrow, Colman McGrath
Journal of Dentistry.2024; 145: 104968. CrossRef - Characterization of pathogenic microbiome on removable prostheses with different levels of cleanliness using 2bRAD-M metagenomic sequencing
Tong Wah Lim, Shi Huang, Yuesong Jiang, Yufeng Zhang, Michael Francis Burrow, Colman McGrath
Journal of Oral Microbiology.2024;[Epub] CrossRef - Gut microbial signatures in clinically stable ulcerative colitis according to the mucosal state and associated symptoms
Soyoung Kim, Yeonjae Jung, Seung Bum Lee, Hyun‐Seok Oh, Sung Noh Hong
Journal of Gastroenterology and Hepatology.2024; 39(2): 319. CrossRef - Difference in gut microbial dysbiotic patterns between body-first and brain-first Parkinson's disease
Don Gueu Park, Woorim Kang, In-Ja Shin, Mauricio Chalita, Hyun-Seok Oh, Dong-Wook Hyun, Hyun Kim, Jongsik Chun, Young-Sil An, Eun Jeong Lee, Jung Han Yoon
Neurobiology of Disease.2024; 201: 106655. CrossRef - Should Routine Diagnostics Implement Gut Microbiota Analysis?
Giuseppe Guido Maria Scarlata, Ludovico Abenavoli
The International Journal of Gastroenterology and Hepatology Diseases.2024;[Epub] CrossRef - Feasibility study for a fully decentralized clinical trial in participants with functional constipation symptoms
Ki Young Huh, Woo Kyung Chung, Jiyeon Park, SeungHwan Lee, Min‐Gul Kim, Jaeseong Oh, Kyung‐Sang Yu
Clinical and Translational Science.2023; 16(11): 2177. CrossRef - Predicting Personalized Responses to Dietary Fiber Interventions: Opportunities for Modulation of the Gut Microbiome to Improve Health
Car Reen Kok, Devin Rose, Robert Hutkins
Annual Review of Food Science and Technology.2023; 14(1): 157. CrossRef - Effects of the multidomain intervention with nutritional supplements on cognition and gut microbiome in early symptomatic Alzheimer’s disease: a randomized controlled trial
Eun Hye Lee, Geon Ha Kim, Hee Kyung Park, Hae Jin Kang, Yoo Kyoung Park, Hye Ah Lee, Chang Hyung Hong, So Young Moon, Woorim Kang, Hyun-Seok Oh, Hai-Jeon Yoon, Seong Hye Choi, Jee Hyang Jeong
Frontiers in Aging Neuroscience.2023;[Epub] CrossRef - Fecal microbial signatures of healthy Han individuals from three bio-geographical zones in Guangdong
Litao Huang, Liting Deng, Changhui Liu, Enping Huang, Xiaolong Han, Cheng Xiao, Xiaomin Liang, Huilin Sun, Chao Liu, Ling Chen
Frontiers in Microbiology.2022;[Epub] CrossRef
Journal Articles
- The novel antifungal agent AB-22 displays in vitro activity against hyphal growth and biofilm formation in Candida albicans and potency for treating systemic candidiasis
-
Kyung-Tae Lee , Dong-Gi Lee , Ji Won Choi , Jong-Hyun Park , Ki Duk Park , Jong-Seung Lee , Yong-Sun Bahn
-
J. Microbiol. 2022;60(4):438-443. Published online March 14, 2022
-
DOI: https://doi.org/10.1007/s12275-022-2016-0
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298
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3
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2
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Abstract
PDF
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Systemic candidiasis, which is mainly caused by Candida albicans,
is a serious acute fungal infection in the clinical setting.
In a previous study, we reported that compound 22h (designated
as AB-22 in this study), a vinyl sulfate compound, is a
fast-acting fungicidal agent against a broad spectrum of fungal
pathogens. In this study, we aimed to further analyze the
in vitro and in vivo efficacy of AB-22 against filamentation,
biofilm formation, and virulence of C. albicans. Under in vitro
hyphal growth-inducing condition, AB-22 effectively inhibited
germ tube formation and hyphal growth, which are required
for the initiation of biofilm formation. Indeed, AB-22
significantly suppressed C. albicans biofilm formation in a
dose-dependent manner. Moreover, AB-22 treatment inhibited
the normal induction of ALS3, HWP1, and ECE1, which
are all required for hyphal transition in C. albicans. Furthermore,
AB-22 treatment increased the survival of mice systemically
infected with C. albicans. In conclusion, in addition
to its fungicidal activity, AB-22 inhibits filamentation and
biofilm formation in C. albicans, which could collectively contribute
to its potent in vivo efficacy against systemic candidiasis.
-
Citations
Citations to this article as recorded by

- Preparation and analysis of quinoa active protein (QAP) and its mechanism of inhibiting Candida albicans from a transcriptome perspective
Xufei Zhang, Chunmei Zheng, Wenxuan Ge, Xueying Li, Xiuzhang Wang, Yanxia Sun, Xiaoyong Wu
PeerJ.2025; 13: e18961. CrossRef - Inhibition of candidalysin production by methoxy-apo-enterobactin from Streptomyces ambofaciens CJD34 as a novel antifungal strategy against Candida albicans
Eui-Seong Kim, Hyeongju Jeong, Mustansir Abbas, Soohyun Um, Juntack Oh, Kyuho Moon, Kyung-Tae Lee
Journal of Microbiology.2025; 63(6): e2504019. CrossRef
- The role of Jacalin-related lectin gene AOL_s00083g511 in the development and pathogenicity of the nematophagous fungus Arthrobotrys oligospora
-
Xinyuan Dong , Jiali Si , Guanghui Zhang , Zhen Shen , Li Zhang , Kangliang Sheng , Jingmin Wang , Xiaowei Kong , Xiangdong Zha , Yongzhong Wang
-
J. Microbiol. 2021;59(8):736-745. Published online July 5, 2021
-
DOI: https://doi.org/10.1007/s12275-021-1029-4
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368
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4
Web of Science
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3
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Abstract
PDF
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Arthrobotrys oligospora is a model species of nematophagous
fungi and has great potential for the biological control of nematode
diseases. Lectin is a protein that binds to carbohydrates
and their complexes with high specificity, which mediates recognition
events in various physiological and pathological
processes. This study aimed to investigate the role of the
Jacalin-related lectin (JRL) gene, AOL_s00083g511, in A. oligospora
development. Through a homology recombination
approach, we obtained the AOL_s00083g511 knockout mutant
strain (Δg511). Next, the biological characteristics of the
Δg511 mutant strain, including growth rate, conidia germination
rate, adaptation to environmental stresses, and nematocidal
activity, were compared with those of the wild-type
(WT) strain. The results showed that the JRL gene AOL_
s00083g511 did not affect fungal growth, conidia germination,
3D-trap formation, and the ability of A. oligospora to
prey on nematodes significantly. We speculate that this phenomenon
may be caused by a loss of the key β1–β2 loops in
the AOL_ s00083g511-encoded JRL domain and an intrinsic
genetic compensation of AOL_s00083g511 in this fungus.
The growth rates of both strains on high salt or surfactant media
were similar; however, in the strong oxidation medium,
the growth rate of the Δg511 mutant was significantly lower
than that of the WT strain, indicating that AOL_s00083g511
might play a role in oxidative stress resistance. These findings
provide a basis for further analysis of the related functions
of the JRL gene in A. oligospora and their potential roles
in the biological control of nematodes in the future.
-
Citations
Citations to this article as recorded by

- Function discovery of a non-ribosomal peptide synthetase-like encoding gene in the nematode-trapping fungus Arthrobotrys oligospora
Tiantian Gu, Hengqian Lu, Huiwen Liu, Guanghui Zhang, Yongzhong Wang
Frontiers in Microbiology.2023;[Epub] CrossRef - The fucose-specific lectin gene AOL_s00054g276 affects trap formation and nematocidal activity of the nematophagous fungus Arthrobotrys oligospora
Jiali Si, Xinyuan Dong, Guanghui Zhang, Hengqian Lu, Kaijing Tang, Li Zhang, Xiaowei Kong, Kangliang Sheng, Jingmin Wang, Xiangdong Zha, Yongzhong Wang
FEMS Microbiology Letters.2022;[Epub] CrossRef - Phospholipase C (AoPLC2) regulates mycelial development, trap morphogenesis, and pathogenicity of the nematode-trapping fungus Arthrobotrys oligospora
Meihua Xie, Ni Ma, Na Bai, Meichen Zhu, Ke-Qin Zhang, Jinkui Yang
Journal of Applied Microbiology.2022; 132(3): 2144. CrossRef
- Inferences in microbial structural signatures of acne microbiome and mycobiome
-
Jubin Kim , Taehun Park , Hye-Jin Kim , Susun An , Woo Jun Sul
-
J. Microbiol. 2021;59(4):369-375. Published online February 10, 2021
-
DOI: https://doi.org/10.1007/s12275-021-0647-1
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403
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24
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23
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Abstract
PDF
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Acne vulgaris, commonly known as acne, is the most common
skin disorder and a multifactorial disease of the sebaceous
gland. Although the pathophysiology of acne is still
unclear, bacterial and fungal factors are known to be involved
in. This study aimed to investigate whether the microbiomes
and mycobiomes of acne patients are distinct from those of
healthy subjects and to identify the structural signatures of
microbiomes related to acne vulgaris. A total of 33 Korean
female subjects were recruited (Acne group, n = 17; Healthy
group, n = 16), and microbiome samples were collected swabbing
the forehead and right cheek. To characterize the fungal
and bacterial communities, 16S rRNA V4–V5 and ITS1 region,
respectively, were sequenced and analysed using Qiime2.
There were no significant differences in alpha and beta diversities
of microbiomes between the Acne and Healthy groups.
In comparison with the ratio of Cutibacterium to Staphylococcus,
the acne patients had higher abundance of Staphylococcus
compared to Cutibacterium than the healthy individuals.
In network analysis with the dominant microorganism
amplicon sequence variants (ASV) (Cutibacterium, Staphylococcus,
Malassezia globosa, and Malassezia restricta) Cutibacterium
acnes was identified to have hostile interactions
with Staphylococcus and Malassezia globosa. Accordingly, this
results
suggest an insight into the differences in the skin microbiome
and mycobiome between acne patients and healthy
controls and provide possible microorganism candidates that
modulate the microbiomes associated to acne vulgaris.
-
Citations
Citations to this article as recorded by

- Acne due to JAK inhibitors in inflammatory bowel disease
Andrew Awad, Britt Christensen, Jonathan P Segal, Gayle Ross
Frontline Gastroenterology.2025; 16(2): 166. CrossRef - Amplicon-based analysis reveals link between adolescent acne and altered facial skin microbiome induced by negative emotional states
Yu Chen, Lixia Peng, Yueying Li, Yusheng Peng, Siqi Dai, Kai Han, Jinge Xin
Frontiers in Cellular and Infection Microbiology.2025;[Epub] CrossRef - Cyclodextrin-based supramolecular dissolving microneedles for enhanced transdermal delivery of azelaic acid in acne vulgaris treatment
Yuxu Chen, Yuanyu Xu, Jingqing Zhang, Xinjun Xu
Journal of Drug Delivery Science and Technology.2025; 111: 107108. CrossRef - Analysis of Skin Microbiome in Facial and Back Acne Patients Based on High‐Throughput Sequencing
YiJie Du, BenYue Li, Jie Yang, YeXiang Zhang, FengWei Qi, Hong Meng
Journal of Cosmetic Dermatology.2025;[Epub] CrossRef - Yanomami skin microbiome complexity challenges prevailing concepts of healthy skin
Juliana Durack, Yvette Piceno, Hoang Vuong, Brian Fanelli, David A. Good, Nur A. Hasan, Manoj Dadlani, Larry Weiss, Julia Oh, Aleksandar D. Kostic, Thomas L. Dawson, Hortensia Caballero-Arias, Rita R. Colwell
Nature Communications.2025;[Epub] CrossRef - The Mechanism and Research Progress of Skin Microbiota in Pathogenesis of Acne
Xinwei Li, Juan Jin, Craig G. Burkhart
Dermatology Research and Practice.2025;[Epub] CrossRef - Unveiling acne microbiome signatures: the role of the microbiome and the impact of a facewash formula containing plant-derived monoterpenes
Yi-Ning Xu, Neha Salgaonkar, Mingming Pu, Stacy Hawkins, Kevin Hermanson, Yaping Du, Chandraprabha Doraiswamy, Yimei Tan, Chao Yuan, Anindya Dasgupta, Chung-Ching Chu
British Journal of Dermatology.2025; 193(Supplement): ii15. CrossRef - Interações entre malassezia restricta e o micobioma humano: uma perspectiva abrangente
Maria Vitória Cavalheiro Berlofa, Ana Carolina de Oliveira Ramos Siqueira, Yara Natércia Lima Faustino de Maria, Rafaela de Campos Oliveira, Paulo Salarrola Takao, Ana Clara da Silva, Milena Coutinho Natucci, Fabiano Bezerra Menegidio, Daniela Leite Jabes
Revista Científica Multidisciplinar Núcleo do Conhecimento.2024; : 21. CrossRef - Guidelines of care for the management of acne vulgaris
Rachel V. Reynolds, Howa Yeung, Carol E. Cheng, Fran Cook-Bolden, Seemal R. Desai, Kelly M. Druby, Esther E. Freeman, Jonette E. Keri, Linda F. Stein Gold, Jerry K.L. Tan, Megha M. Tollefson, Jonathan S. Weiss, Peggy A. Wu, Andrea L. Zaenglein, Jung Min H
Journal of the American Academy of Dermatology.2024; 90(5): 1006.e1. CrossRef - Microenvironmental host–microbe interactions in chronic inflammatory skin diseases
Lene Bay, Gregor Borut Jemec, Hans Christian Ring
APMIS.2024; 132(12): 974. CrossRef - Microbiome: Role in Inflammatory Skin Diseases
Xue-Er Zhang, Pai Zheng, Sheng-Zhen Ye, Xiao Ma, E Liu, Yao-Bin Pang, Qing-Ying He, Yu-Xiao Zhang, Wen-Quan Li, Jin-Hao Zeng, Jing Guo
Journal of Inflammation Research.2024; Volume 17: 1057. CrossRef - Evaluation of the Effects of Age, Sex, and Dexpanthenol-Containing Skin Care on the Facial and Body Skin Microbiome
Zainab Qaizar, Raffaella de Salvo, Gregor Bieri, Katrin Unbereit, Shannon Montgomery, Erwan Peltier
Cosmetics.2024; 11(6): 213. CrossRef - New insights into the characteristic skin microorganisms in different grades of acne and different acne sites
Zitao Guo, Yuliang Yang, Qianjie Wu, Meng Liu, Leyuan Zhou, Liang Zhang, Dake Dong
Frontiers in Microbiology.2023;[Epub] CrossRef - Distinct skin microbiome modulation following different topical acne treatments in mild acne vulgaris patients: A randomized, investigator‐blinded exploratory study
Chanidapa Wongtada, Pinidphon Prombutara, Pravit Asawanonda, Nopadon Noppakun, Chanat Kumtornrut, Tanittha Chatsuwan
Experimental Dermatology.2023; 32(6): 906. CrossRef - A cross‐sectional cohort study on the skin microbiota in patients with different acne durations
Lang Sun, Qingqun Wang, Huan Wang, Jing Huang, Zheng Yu
Experimental Dermatology.2023; 32(12): 2102. CrossRef - Truncal acne following JAK inhibitor use in vitiligo with rare opportunistic fungal infections: Two case reports
Jee Yun Doh, Piyapat Rintarhat, Won Hee Jung, Hei Sung Kim
JAAD Case Reports.2023; 37: 123. CrossRef - New Normal Mask-Wearing and Its Impact on Underneath Skin Microbiome: A Cross-Sectional Study in Mild Acne Vulgaris Patients
Chanidapa Wongtada, Thanaporn Puaratana-arunkon, Pinidphon Prombutara, Pravit Asawanonda, Nopadon Noppakun, Chanat Kumtornrut, Tanittha Chatsuwan
Skin Appendage Disorders.2022; 8(5): 376. CrossRef - Truncal Acne: An Overview
Yu Ri Woo, Hei Sung Kim
Journal of Clinical Medicine.2022; 11(13): 3660. CrossRef - Skin microbiome in acne vulgaris, skin aging, and rosacea
Yu-Ching Weng, Yi-Ju Chen
Dermatologica Sinica.2022; 40(3): 129. CrossRef - Infant Mode of Delivery Shapes the Skin Mycobiome of Prepubescent Children
Yan-Ren Wang, Ting Zhu, Fan-Qi Kong, Yuan-Yuan Duan, Carlos Galzote, Zhe-Xue Quan, Jan Claesen, Laura Tipton
Microbiology Spectrum.2022;[Epub] CrossRef - A split face study on the effect of an anti-acne product containing fermentation products of Enterococcus faecalis CBT SL-5 on skin microbiome modification and acne improvement
Hye Sung Han, Sun Hye Shin, Bo-Yun Choi, Nayeon Koo, Sanghyun Lim, Dooheon Son, Myung Jun Chung, Kui Young Park, Woo Jun Sul
Journal of Microbiology.2022; 60(5): 488. CrossRef - Genome of Malassezia arunalokei and Its Distribution on Facial Skin
Yong-Joon Cho, Taeyune Kim, Daniel Croll, Minji Park, Donghyeun Kim, Hye Lim Keum, Woo Jun Sul, Won Hee Jung, Teresa R. O'Meara
Microbiology Spectrum.2022;[Epub] CrossRef - Features of the Skin Microbiota in Common Inflammatory Skin Diseases
Iva Ferček, Liborija Lugović-Mihić, Arjana Tambić-Andrašević, Diana Ćesić, Ana Gverić Grginić, Iva Bešlić, Marinka Mravak-Stipetić, Iva Mihatov-Štefanović, Ana-Marija Buntić, Rok Čivljak
Life.2021; 11(9): 962. CrossRef
- Comparative genomic analysis of selenium utilization traits in different marine environments
-
Muhammad Farukh
-
J. Microbiol. 2020;58(2):113-122. Published online January 29, 2020
-
DOI: https://doi.org/10.1007/s12275-020-9250-0
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338
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3
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3
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Abstract
PDF
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Selenium (Se) is an essential trace element for many organisms,
which is required in the biosynthesis of proteins with
selenocysteine, tRNAs with selenouridine, and certain enzymes
with Se as a cofactor. Recent large-scale metagenomics
projects provide a unique opportunity for studying the global
trends of Se utilization in marine environments. Here,
we analyzed samples from different marine microbial communities,
revealed by the Tara Oceans project, to characterize
the Se utilization traits. We found that the selenophosphate
synthetase gene, which defines the overall Se utilization, and
Se utilization traits are present in all samples. Regions with
samples rich and poor in Se utilization traits were categorized.
From the analysis of environmental factors, the mesopelagic
zone and high temperature (> 15°C) of water are favorable,
while geographical location has little influence on
Se utilization. All Se utilization traits showed a relatively independent
occurrence. The taxonomic classification of Se
traits shows that most of the sequences corresponding to Se
utilization traits belong to the phylum Proteobacteria. Overall,
our study provides useful insights into the general features of
Se utilization in ocean samples and may help to understand
the evolutionary dynamics of Se utilization in different marine
environments.
-
Citations
Citations to this article as recorded by

- The selenophosphate synthetase family: A review
Bruno Manta, Nadezhda E Makarova, Marco Mariotti
Free Radical Biology and Medicine.2022; 192: 63. CrossRef - Selenium Metabolism and Selenoproteins in Prokaryotes: A Bioinformatics Perspective
Yan Zhang, Jiao Jin, Biyan Huang, Huimin Ying, Jie He, Liang Jiang
Biomolecules.2022; 12(7): 917. CrossRef - Uses of Selenium Nanoparticles in the Plant Production
Iqra Bano, Sylvie Skalickova, Hira Sajjad, Jiri Skladanka, Pavel Horky
Agronomy.2021; 11(11): 2229. CrossRef
- Novosphingobium sp. PP1Y as a novel source of outer membrane vesicles
-
Federica De Lise , Francesca Mensitieri , Giulia Rusciano , Fabrizio Dal Piaz , Giovanni Forte , Flaviana Di Lorenzo , Antonio Molinaro , Armando Zarrelli , Valeria Romanucci , Valeria Cafaro , Antonio Sasso , Amelia Filippelli , Alberto Di Donato , Viviana Izzo
-
J. Microbiol. 2019;57(6):498-508. Published online May 27, 2019
-
DOI: https://doi.org/10.1007/s12275-019-8483-2
-
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375
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0
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5
Web of Science
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5
Crossref
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Abstract
PDF
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Outer membrane vesicles (OMVs) are nanostructures of 20–
200 nm diameter deriving from the surface of several Gramnegative
bacteria. OMVs are emerging as shuttles involved in
several mechanisms of communication and environmental
adaptation. In this work, OMVs were isolated and characterized
from Novosphingobium sp. PP1Y, a Gram-negative
non-pathogenic microorganism lacking LPS on the outer
membrane surface and whose genome was sequenced and
annotated. Scanning electron microscopy performed on samples
obtained from a culture in minimal medium highlighted
the presence of PP1Y cells embedded in an extracellular matrix
rich in vesicular structures. OMVs were collected from
the exhausted growth medium during the mid-exponential
phase, and purified by ultracentrifugation on a sucrose gradient.
Atomic force microscopy, dynamic light scattering and
nanoparticle tracking analysis showed that purified PP1Y
OMVs had a spherical morphology with a diameter of ca. 150
nm and were homogenous in size and shape. Moreover, proteomic
and fatty acid analysis of purified OMVs revealed a
specific biochemical “fingerprint”, suggesting interesting details
concerning their biogenesis and physiological role. Moreover,
these extracellular nanostructures do not appear to be
cytotoxic on HaCaT cell line, thus paving the way to their
future use as novel drug delivery systems.
-
Citations
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- Outer membrane vesicles from Escherichia coli as a presentation platform for AR-23 antiviral peptide
Francesca Mensitieri, Federica Dell’Annunziata, Giulia Gaudino, Veronica Folliero, Gianluigi Franci, Fabrizio Dal Piaz, Viviana Izzo
Frontiers in Molecular Biosciences.2025;[Epub] CrossRef -
Proteomic analysis of meropenem-induced outer membrane vesicles released by carbapenem-resistant
Klebsiella pneumoniae
Fangfang Fan, Guangzhang Chen, Siqian Deng, Li Wei, Mariola J. Ferraro
Microbiology Spectrum.2024;[Epub] CrossRef - LuxR402 of Novosphingobium sp. HR1a regulates the correct configuration of cell envelopes
Ana Segura, Lázaro Molina
Frontiers in Microbiology.2023;[Epub] CrossRef - Genomic and physiological characterization of Novosphingobium terrae sp. nov., an alphaproteobacterium isolated from Cerrado soil containing a mega-sized chromid
Aline Belmok, Felipe Marques de Almeida, Rodrigo Theodoro Rocha, Carla Simone Vizzotto, Marcos Rogério Tótola, Marcelo Henrique Soller Ramada, Ricardo Henrique Krüger, Cynthia Maria Kyaw, Georgios J. Pappas
Brazilian Journal of Microbiology.2023; 54(1): 239. CrossRef - Outer Membrane Vesicles Derived from Klebsiella pneumoniae Are a Driving Force for Horizontal Gene Transfer
Federica Dell’Annunziata, Carmela Dell’Aversana, Nunzianna Doti, Giuliana Donadio, Fabrizio Dal Piaz, Viviana Izzo, Anna De Filippis, Marilena Galdiero, Lucia Altucci, Giovanni Boccia, Massimiliano Galdiero, Veronica Folliero, Gianluigi Franci
International Journal of Molecular Sciences.2021; 22(16): 8732. CrossRef
- Proteome analysis reveals global response to deletion of mrflbA in Monascus ruber
-
Qingqing Yan , Zhouwei Zhang , Yishan Yang , Fusheng Chen , Yanchun Shao
-
J. Microbiol. 2018;56(4):255-263. Published online February 28, 2018
-
DOI: https://doi.org/10.1007/s12275-018-7425-8
-
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322
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0
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4
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-
Abstract
PDF
-
Monascus spp. are commonly used for a wide variety of applications
in the food and pharmaceutical industries. In previous
studies, the knock-out of mrflbA (a putative regulator
of the G protein α subunit) in M. ruber led to autolysis of
the mycelia, decreased pigmentation and lowered mycotoxin
production. Therefore, we aimed to obtain a comprehensive
overview of the underlying mechanism of mrflbA deletion
at the proteome level. A two-dimensional gel electrophoresis
analysis of mycelial proteins indicated that the abundance
of 178 proteins was altered in the ΔmrflbA strain, 33 of which
were identified with high confidence. The identified proteins
are involved in a range of activities, including carbohydrate
and amino acid metabolism, hyphal development and the oxidative
stress response, protein modification, and the regulation
of cell signaling. Consistent with these findings, the activity
of antioxidative enzymes and chitinase was elevated in
the supernatant of the ΔmrflbA strain. Furthermore, deletion
of mrflbA resulted in the transcriptional reduction of secondary
metabolites (pigment and mycotoxin). In short, the
mutant phenotypes induced by the deletion of mrflbA were
consistent with changes in the expression levels of associated
proteins, providing direct evidence of the regulatory functions
mediated by mrflbA in M. ruber.
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Qianrui Liu, Yunfan Zheng, Baixue Liu, Fufang Tang, Yanchun Shao
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Food Bioscience.2022; 50: 102153. CrossRef - Quantitative Proteomics Analysis by Sequential Window Acquisition of All Theoretical Mass Spectra–Mass Spectrometry Reveals Inhibition Mechanism of Pigments and Citrinin Production of Monascus Response to High Ammonium Chloride Concentration
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Journal of Agricultural and Food Chemistry.2020; 68(3): 808. CrossRef
- Variations in bacterial and fungal communities through soil depth profiles in a Betula albosinensis forest
-
Can Du , Zengchao Geng , Qiang Wang , Tongtong Zhang , Wenxiang He , Lin Hou , Yueling Wang
-
J. Microbiol. 2017;55(9):684-693. Published online September 2, 2017
-
DOI: https://doi.org/10.1007/s12275-017-6466-8
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326
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37
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Abstract
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Microbial communities in subsurface soil are specialized for
their environment, which is distinct from that of the surface
communities. However, little is known about the microbial
communities (bacteria and fungi) that exist in the deeper
soil horizons. Vertical changes in microbial alpha-diversity
(Chao1 and Shannon indices) and community composition
were investigated at four soil depths (0–10, 10–20, 20–40,
and 40–60 cm) in a natural secondary forest of Betula albosinensis
by high-throughput sequencing of the 16S and internal
transcribed spacer rDNA regions. The numbers of operational
taxonomic units (OTUs), and the Chao1 and Shannon
indices decreased in the deeper soil layers. Each soil layer
contained both mutual and specific OTUs. In the 40–60 cm
soil layer, 175 and 235 specific bacterial and fungal OTUs
were identified, respectively. Acidobacteria was the most dominant
bacterial group in all four soil layers, but reached its
maximum at 40–60 cm (62.88%). In particular, the 40–60 cm
soil layer typically showed the highest abundance of the fungal
genus Inocybe (47.46%). The Chao1 and Shannon indices
were significantly correlated with the soil organic carbon content.
Redundancy analysis indicated that the bacterial communities
were closely correlated with soil organic carbon
content (P = 0.001). Collectively, these results indicate that
soil nutrients alter the microbial diversity and relative abundance
and affect the microbial composition.
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Frontiers in Microbiology.2021;[Epub] CrossRef - Root associated fungi respond more strongly than rhizosphere soil fungi to N fertilization in a boreal forest
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- Comparative and bioinformatics analyses of pathogenic bacterial secretomes identified by mass spectrometry in Burkholderia species
-
Thao Thi Nguyen , Tae-Soo Chon , Jaehan Kim , Young-Su Seo , Muyoung Heo
-
J. Microbiol. 2017;55(7):568-582. Published online June 30, 2017
-
DOI: https://doi.org/10.1007/s12275-017-7085-0
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314
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3
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Abstract
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Secreted proteins (secretomes) play crucial roles during
bacterial pathogenesis in both plant and human hosts. The
identification and characterization of secretomes in the two
plant pathogens Burkholderia glumae BGR1 and B. gladioli
BSR3, which cause diseases in rice such as seedling blight,
panicle blight, and grain rot, are important steps to not only
understand the disease-causing mechanisms but also find
remedies for the diseases. Here, we identified two datasets of
secretomes in B. glumae BGR1 and B. gladioli BSR3, which
consist of 118 and 111 proteins, respectively, using mass spectrometry
approach and literature curation. Next, we characterized
the functional properties, potential secretion pathways
and sequence information properties of secretomes of
two plant pathogens in a comparative analysis by various computational
approaches. The ratio of potential non-classically
secreted proteins (NCSPs) to classically secreted proteins
(CSPs) in B. glumae BGR1 was greater than that in B. gladioli
BSR3. For CSPs, the putative hydrophobic regions (PHRs)
which are essential for secretion process of CSPs were screened
in detail at their N-terminal sequences using hidden Markov
model (HMM) – based method. Total 31 pairs of homologous
proteins in two bacterial secretomes were indicated
based on the global alignment (identity ≥ 70%). Our results
may facilitate the understanding of the species-specific features
of secretomes in two plant pathogenic Burkholderia
species.
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Frontiers in Veterinary Science.2022;[Epub] CrossRef - Characterisation of Pythium aristosporum Oomycete—A Novel Pathogen Causing Rice Seedling Blight in China
Jinxin Liu, Ruisi Zhang, Chuzhen Xu, Chunlai Liu, Yanyan Zheng, Xue Zhang, Shasha Liu, Yonggang Li
Journal of Fungi.2022; 8(9): 890. CrossRef - Bacterial Panicle Blight and Burkholderia glumae: From Pathogen Biology to Disease Control
Laura Ortega, Clemencia M. Rojas
Phytopathology®.2021; 111(5): 772. CrossRef
- ZntR positively regulates T6SS4 expression in Yersinia pseudotuberculosis
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Tietao Wang , Keqi Chen , Fen Gao , Yiwen Kang , Muhammad Tausif Chaudhry , Zhuo Wang , Yao Wang , Xihui Shen
-
J. Microbiol. 2017;55(6):448-456. Published online March 10, 2017
-
DOI: https://doi.org/10.1007/s12275-017-6540-2
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357
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21
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Abstract
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The type VI secretion system (T6SS) is a widespread and versatile protein secretion system found in most Gram- negative bacteria. Studies of T6SS have mainly focused on its role in virulence toward host cells and inter-bacterial inter-actions, but studies have also shown that T6SS4 in Yersinia pseudotuberculosis participates in the acquisition of zinc ions to alleviate the accumulation of hydroxyl radicals induced by multiple stressors. Here, by comparing the gene expression patterns of wild-type and zntR mutant Y. pseudotubercu-losis cells using RNA-seq analysis, T6SS4 and 17 other bio-logical processes were found to be regulated by ZntR. T6SS4 was positively regulated by ZntR in Y. pseudotuberculosis, and further investigation demonstrated that ZntR regulates T6SS4 by directly binding to its promoter region. T6SS4 ex-pression is regulated by zinc via ZntR, which maintains in-tracellular zinc homeostasis and controls the concentration of reactive oxygen species to prevent bacterial death under oxidative stress. This study provides new insights into the regulation of T6SS4 by a zinc-dependent transcriptional regu-lator, and it provides a foundation for further investigation of the mechanism of zinc transport by T6SS.
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International Journal of Molecular Sciences.2025; 26(4): 1472. CrossRef -
ZntR is a critical regulator for zinc homeostasis and involved in pathogenicity in
Riemerella anatipestifer
Hongmeng Ma, Mengying Wang, Yizhou Yao, Shutong Zhang, Mingshu Wang, Dekang Zhu, Renyong Jia, Shun Chen, Xinxin Zhao, Qiao Yang, Ying Wu, Shaqiu Zhang, Juan Huang, Bin Tian, Xumin Ou, Di Sun, Yu He, Zhen Wu, Ling Zhang, Yanling Yu, Anchun Cheng, Mafeng Li
Microbiology Spectrum.2025;[Epub] CrossRef - Two-Component Signaling System RegAB Represses Pseudomonas syringae pv. actinidiae T3SS by Directly Binding to the promoter of hrpRS1
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Journal of Integrative Agriculture.2024;[Epub] CrossRef - Pb2+ biosorption by Serratia marcescens CCMA 1010 and its relation with zntR gene expression and ZntA efflux pump regulation
Jorge Dias Carlier, Gustavo Magno dos Reis Ferreira, Rosane Freitas Schwan, Cristina Ferreira da Silva, Maria Clara Costa
Environmental Advances.2024; 15: 100479. CrossRef - OxyR-regulated T6SS functions in coordination with siderophore to resist oxidative stress
Changfu Li, Zhiyan Wei, Xinquan He, Haiyang He, Yuqi Liu, Yuxin Zuo, He Xiao, Yao Wang, Xihui Shen, Lingfang Zhu, Olaya Rendueles
Microbiology Spectrum.2024;[Epub] CrossRef - A σE-mediated temperature gauge orchestrates type VI secretion system, biofilm formation and cell invasion in pathogen Pseudomonas plecoglossicida
Yibei Zhang, Yuping Huang, Haoyuan Ding, Jiabao Ma, Xinyu Tong, Yuanxing Zhang, Zhen Tao, Qiyao Wang
Microbiological Research.2023; 266: 127220. CrossRef - Impact of lead (Pb2+) on the growth and biological activity of Serratia marcescens selected for wastewater treatment and identification of its zntR gene—a metal efflux regulator
Gustavo Magno dos Reis Ferreira, Josiane Ferreira Pires, Luciana Silva Ribeiro, Jorge Dias Carlier, Maria Clara Costa, Rosane Freitas Schwan, Cristina Ferreira Silva
World Journal of Microbiology and Biotechnology.2023;[Epub] CrossRef -
MlrA, a MerR family regulator in
Vibrio cholerae
, senses the anaerobic signal in the small intestine of the host to promote bacterial intestinal colonization
Jialin Wu, Yutao Liu, Wendi Li, Fan Li, Ruiying Liu, Hao Sun, Jingliang Qin, Xiaohui Feng, Di Huang, Bin Liu
Gut Microbes.2022;[Epub] CrossRef - Nutritional immunity: the battle for nutrient metals at the host–pathogen interface
Caitlin C. Murdoch, Eric P. Skaar
Nature Reviews Microbiology.2022; 20(11): 657. CrossRef - The transcriptional regulator Zur regulates the expression of ZnuABC and T6SS4 in response to stresses in Yersinia pseudotuberculosis
Ran Cai, Fen Gao, Junfeng Pan, Xinwei Hao, Zonglan Yu, Yichen Qu, Jialin Li, Dandan Wang, Yao Wang, Xihui Shen, Xingyu Liu, Yantao Yang
Microbiological Research.2021; 249: 126787. CrossRef - T6SS Mediated Stress Responses for Bacterial Environmental Survival and Host Adaptation
Kai-Wei Yu, Peng Xue, Yang Fu, Liang Yang
International Journal of Molecular Sciences.2021; 22(2): 478. CrossRef -
Yersiniabactin contributes to overcoming zinc restriction during
Yersinia pestis
infection of mammalian and insect hosts
Sarah L. Price, Viveka Vadyvaloo, Jennifer K. DeMarco, Amanda Brady, Phoenix A. Gray, Thomas E. Kehl-Fie, Sylvie Garneau-Tsodikova, Robert D. Perry, Matthew B. Lawrenz
Proceedings of the National Academy of Sciences.2021;[Epub] CrossRef - Roles of Type VI Secretion System in Transport of Metal Ions
Xiaobing Yang, Hai Liu, Yanxiong Zhang, Xihui Shen
Frontiers in Microbiology.2021;[Epub] CrossRef - Beyond dueling: roles of the type VI secretion system in microbiome modulation, pathogenesis and stress resistance
Jinshui Lin, Lei Xu, Jianshe Yang, Zhuo Wang, Xihui Shen
Stress Biology.2021;[Epub] CrossRef - Coordinated regulation of anthranilate metabolism and bacterial virulence by the GntR family regulator MpaR in Pseudomonas aeruginosa
Tietao Wang, Yihang Qi, Zhihan Wang, Jingru Zhao, Linxuan Ji, Jun Li, Zhao Cai, Liang Yang, Min Wu, Haihua Liang
Molecular Microbiology.2020; 114(5): 857. CrossRef - RovC - a novel type of hexameric transcriptional activator promoting type VI secretion gene expression
Vanessa Knittel, Pooja Sadana, Stephanie Seekircher, Anne-Sophie Stolle, Britta Körner, Marcel Volk, Cy M. Jeffries, Dmitri I. Svergun, Ann Kathrin Heroven, Andrea Scrima, Petra Dersch, Joan Mecsas
PLOS Pathogens.2020; 16(9): e1008552. CrossRef - The type VI secretion system protein AsaA in Acinetobacter baumannii is a periplasmic protein physically interacting with TssM and required for T6SS assembly
Lei Li, Yi-Nuo Wang, Hong-Bing Jia, Ping Wang, Jun-Fang Dong, Juan Deng, Feng-Min Lu, Qing-Hua Zou
Scientific Reports.2019;[Epub] CrossRef - Confirmed and Potential Roles of Bacterial T6SSs in the Intestinal Ecosystem
Can Chen, Xiaobing Yang, Xihui Shen
Frontiers in Microbiology.2019;[Epub] CrossRef - The stringent response factor, RelA, positively regulates T6SS4 expression through the RovM/RovA pathway in Yersinia pseudotuberculosis
Xiaobing Yang, Yunhong Song, Qingyun Dai, Hongyun Zhang, Li Song, Zhuo Wang, Junfeng Pan, Yao Wang
Microbiological Research.2019; 220: 32. CrossRef - Type VI Secretion Systems Present New Insights on Pathogenic Yersinia
Xiaobing Yang, Junfeng Pan, Yao Wang, Xihui Shen
Frontiers in Cellular and Infection Microbiology.2018;[Epub] CrossRef
- Identification of essential genes of Pseudomonas aeruginosa for its growth in airway mucus
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Mohammed Abd Alrahman , Sang Sun Yoon
-
J. Microbiol. 2017;55(1):68-74. Published online December 30, 2016
-
DOI: https://doi.org/10.1007/s12275-017-6515-3
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325
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8
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Abstract
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Pseudomonas aeruginosa has been identified as an important
causative agent of airway infection, mainly in cystic fibrosis.
This disease is characterized by defective mucociliary clearance
induced in part by mucus hyper-production. Mucin is
a major component of airway mucus and is heavily O-glycosylated,
with a protein backbone. Airway infection is known
to be established with bacterial adhesion to mucin. However,
the genes involved in mucin degradation or utilization remain
elusive. In this study, we sought to provide a genetic basis of
P. aeruginosa airway growth by identifying those genes. First,
using RNASeq analyses, we compared genome-wide expression
profiles of PAO1, a prototype P. aeruginosa laboratory
strain, grown in M9-mucin (M9M) and M9-glucose (M9G)
media. Additionally, a PAO1 transposon (Tn) insertion mutants
library was screened for mutants defective in growth
in M9M medium. One mutant with a Tn insertion in the
xcpU gene (PA3100) was determined to exhibit faulty growth
in M9M medium. This gene contributes to the type II secretion
system, suggesting that P. aeruginosa uses this secretion
system to produce a number of proteins to break down and
assimilate the mucin molecule. Furthermore, we screened
the PAO1 genome for genes with protease activity. Of 13 mutants,
one with mutation in PA3247 gene exhibited defective
growth in M9M, suggesting that the PA3247-encoded protease
plays a role in mucin utilization. Further mechanistic
dissection of this particular process will reveal new drug targets,
the inhibition of which could control recalcitrant P. aeruginosa
infections.
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Citrobacter rodentium
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Yuki Fukaya, Miho Takemura, Takashi Koyanagi, Takashi Maoka, Kazutoshi Shindo, Norihiko Misawa
Bioscience, Biotechnology, and Biochemistry.2018; 82(6): 1043. CrossRef - Evolutionary conservation of the antimicrobial function of mucus: a first defence against infection
Cassie R Bakshani, Ana L Morales-Garcia, Mike Althaus, Matthew D Wilcox, Jeffrey P Pearson, John C Bythell, J Grant Burgess
npj Biofilms and Microbiomes.2018;[Epub] CrossRef - Expanding Role of Type II Secretion in Bacterial Pathogenesis and Beyond
Nicholas P. Cianciotto, Richard C. White, Anthony T. Maurelli
Infection and Immunity.2017;[Epub] CrossRef
- A computationally simplistic poly-phasic approach to explore microbial communities from the Yucatan aquifer as a potential sources of novel natural products
-
Marfil-Santana Miguel David , O’Connor-Sánchez Aileen , Ramírez-Prado Jorge Humberto , De los Santos-Briones Cesar , López- Aguiar , Lluvia Korynthia , Rojas-Herrera Rafael , Lago-Lestón Asunción , Prieto-Davó Alejandra
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J. Microbiol. 2016;54(11):774-781. Published online October 29, 2016
-
DOI: https://doi.org/10.1007/s12275-016-6092-x
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319
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3
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Abstract
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The need for new antibiotics has sparked a search for the
microbes that might potentially produce them. Current sequencing
technologies allow us to explore the biotechnological
potential of microbial communities in diverse environments
without the need for cultivation, benefitting natural
product discovery in diverse ways. A relatively recent method
to search for the possible production of novel compounds
includes studying the diverse genes belonging to polyketide
synthase pathways (PKS), as these complex enzymes are an
important source of novel therapeutics. In order to explore
the biotechnological potential of the microbial community
from the largest underground aquifer in the world located
in the Yucatan, we used a polyphasic approach in which a
simple, non-computationally intensive method was coupled
with direct amplification of environmental DNA to assess
the diversity and novelty of PKS type I ketosynthase (KS)
domains. Our results suggest that the bioinformatic method
proposed can indeed be used to assess the novelty of KS enzymes;
nevertheless, this in silico study did not identify some
of the KS diversity due to primer bias and stringency criteria
outlined by the metagenomics pipeline. Therefore, additionally
implementing a method involving the direct cloning of
KS domains enhanced our results. Compared to other freshwater environments, the aquifer was characterized by considerably
less diversity in relation to known ketosynthase domains;
however, the metagenome included a family of KS
type I domains phylogenetically related, but not identical, to
those found in the curamycin pathway, as well as an outstanding
number of thiolases. Over all, this first look into the microbial
community found in this large Yucatan aquifer and
other fresh water free living microbial communities highlights
the potential of these previously overlooked environments
as a source of novel natural products.
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Citations
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- Biosynthetic potential of the sediment microbial subcommunities of an unexplored karst ecosystem and its ecological implications
Pablo Suárez‐Moo, Alejandra Prieto‐Davó
MicrobiologyOpen.2024;[Epub] CrossRef - Changes in the sediment microbial community structure of coastal and inland sinkholes of a karst ecosystem from the Yucatan peninsula
Pablo Suárez-Moo, Claudia A. Remes-Rodríguez, Norma A. Márquez-Velázquez, Luisa I. Falcón, José Q. García-Maldonado, Alejandra Prieto-Davó
Scientific Reports.2022;[Epub] CrossRef - Insights into the Chemical Diversity of Selected Fungi from the Tza Itzá Cenote of the Yucatan Peninsula
Carlos A. Fajardo-Hernández, Firoz Shah Tuglak Khan, Laura Flores-Bocanegra, Alejandra Prieto-Davó, Baojie Wan, Rui Ma, Mallique Qader, Rodrigo Villanueva-Silva, Anahí Martínez-Cárdenas, Marian A. López-Lobato, Shabnam Hematian, Scott G. Franzblau, Huzefa
ACS Omega.2022; 7(14): 12171. CrossRef
Research Support, Non-U.S. Gov'ts
- In silico analysis and experimental validation of lipoprotein and novel Tat signal peptides processing in Anabaena sp. PCC7120
-
Sonika Kumari , Akhilesh Kumar Chaurasia
-
J. Microbiol. 2015;53(12):837-846. Published online December 2, 2015
-
DOI: https://doi.org/10.1007/s12275-015-5281-3
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344
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3
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Abstract
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Signal peptide (SP) plays a pivotal role in protein translocation.
Lipoprotein- and twin arginine translocase (Tat) dependent
signal peptides were studied in All3087, a homolog of
competence protein of Synechocystis PCC6803 and in two
putative alkaline phosphatases (ALPs, Alr2234 and Alr4976),
respectively. In silico analysis of All3087 is shown to possess
the characteristics feature of competence proteins such as
helix-hairpin-helix, N and C-terminal HKD endonuclease
domain, calcium binding domain and N-terminal lipoprotein
signal peptide. The SP recognition-cleavage site in All3087
was predicted (AIA-AC) using SignalP while further in-depth
analysis using Pred-Lipo and WebLogo analysis for consensus
sequence showed it as IAA-C. Activities of putative
ALPs were confirmed by heterologous overexpression, activity
assessment and zymogram analysis. ALP activity in
Anabaena remains cell bound in log-phase, but during late
log/stationary phase, an enhanced ALP activity was detected
in extracellular milieu. The enhancement of ALP activity
during stationary phase was not only due to inorganic phosphate
limitation but also contributed by the presence of novel
bipartite Tat-SP. The Tat signal transported the folded active
ALPs to the membrane, followed by anchoring into the
membrane and successive cleavage enabling transportation
of the ALPs to the extracellular milieu, because of bipartite
architecture and processing of transit Tat-SP.
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Citations
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- The wide world of non-mammalian phospholipase D enzymes
Y. Wang, M.J.O. Wakelam, V.A. Bankaitis, M.I. McDermott
Advances in Biological Regulation.2024; 91: 101000. CrossRef - In silico Analysis of Different Signal Peptides for the Excretory Production of Recombinant NS3-GP96 Fusion Protein in Escherichia coli
Shiva Mohammadi, Zohreh Mostafavi-Pour, Younes Ghasemi, Mahdi Barazesh, Soudabeh Kavousi Pour, Amir Atapour, Pooneh Mokarram, Mohammad Hossein Morowvat
International Journal of Peptide Research and Therapeutics.2019; 25(4): 1279. CrossRef - Signal Peptide Sequence Analysis of Selected Protein Sequences from Cryptosporidium parvum
Mohd Aiman Baru, Muhammad Lokman Md , Afzan Mat Yusof
Trends in Bioinformatics.2018; 11(1): 33. CrossRef
- Soil fungal communities of montane natural secondary forest types in China
-
Fei Cheng , Xin Wei , Lin Hou , Zhengchun Shang , Xiaobang Peng , Peng Zhao , Zhaoxue Fei , Shuoxin Zhang
-
J. Microbiol. 2015;53(6):379-389. Published online May 30, 2015
-
DOI: https://doi.org/10.1007/s12275-015-4722-3
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323
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11
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Abstract
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Distinctive plant communities may provide specific physical
and chemical properties with soils by specific litters and root
exudates to exert effects on soil microorganisms. Past logging
activities in the Qinling Mountains induced diverse
natural secondary forest types (NSFTs). How these recovered
NSFTs regulate patterns of soil microbial communities remain
limited. In the study, we used terminal-restriction fragment
length polymorphism (T-RFLP) to precisely determine
forest type-specific soil fungal diversity and composition in
five NSFTs. Our results indicated that NSFTs had significant
impacts on the soil fungal communities. The most diverse
fungal species were found in the Armand pine (Pinus armandi)
and Chinese pine (Pinus tabulaeformis) forest soils,
followed by sharptooth oak (Quercus aliena var. acuteserrata)
and Chinese pine-sharptooth oak forest soils, the wilson
spruce (Picea wilsonii) forests had the lowest soil fungal diversity.
The analyses of community composition suggested
that the fungal communities of Armand pine forest soils were
similar to those of Chinese pine forest soils, while other communities
prominently differed from each other. Stepwise
multiple regression analysis revealed that soil silt, clay, pH,
and ammonium nitrogen had intimate linkages with soil fungal
diversity. Furthermore, the patterns of soil fungal communites
were strongly governed by the specific soil environments
of the tested NSFTs, as described by canonical correspondence
analysis (CCA). Finally, our study showed that
soil fungal communities may be mediated by NSFTs via
specific soil edaphic status. Hence, such a comparable study
may provide fundamental information for fungal diversity
and community structure of natural forests and assist with
better prediction and understanding how soil fungal composition
and function alter with forest type transformation.
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Freddy Villanueva-Cotrina, Guillermo García-Effron, Soledad Gamarra, Julieta Mariana Rojas, Heli Barron-Pastor, Melina Lorenzini, Gustavo Giusiano
Medical Mycology.2025;[Epub] CrossRef - The microbial network exhibits higher complexity in the rhizosphere than in bulk soils along elevational gradients in the alpine forests
Dungang Wang, Shaojun Deng, Han Yang, Na Li, Qiuhong Feng, Jia Liu, Huajun Yin
Applied Soil Ecology.2025; 213: 106264. CrossRef - Soil Fungal Community Characteristics at Timberlines of Sejila Mountain in Southeast Tibet, China
Fei Cheng, Mingman Li, Yihua Ren, Lei Hou, Tan Gao, Peng He, Xiangsheng Deng, Jie Lu
Journal of Fungi.2023; 9(5): 596. CrossRef - Soil characteristics and microbial community structure on along elevation gradient in a Pinus armandii forest of the Qinling Mountains, China
Yonghua Zhao, Yujie Zhou, Xia Jia, Lei Han, Li Liu, Kun Ren, Xuan Ye, Zhi Qu, Yuanjie Pei
Forest Ecology and Management.2022; 503: 119793. CrossRef - Spatial characteristics of the dominant fungi and their driving factors in forest soils in the Qinling Mountains, China
Yujie Zhou, Xia Jia, Lei Han, Ge Tian, Shuaizhi Kang, Yonghua Zhao
CATENA.2021; 206: 105504. CrossRef - Short-Term Effects of Different Forest Management Methods on Soil Microbial Communities of a Natural Quercus aliena var. acuteserrata Forest in Xiaolongshan, China
Pan Wan, Gongqiao Zhang, Zhonghua Zhao, Yanbo Hu, Wenzhen Liu, Gangying Hui
Forests.2019; 10(2): 161. CrossRef - Influence of seasonality and management practices on diversity and composition of fungal communities in vineyard soils
Maria M. Hernandez, Cristina M. Menéndez
Applied Soil Ecology.2019; 135: 113. CrossRef - Seasonal dynamics of bacterial communities in a Betula albosinensis forest
C. Du, C.‐Y. Xu, J.‐S. Jian, W.‐X. He, L. Hou, Z.‐C. Geng
European Journal of Soil Science.2018; 69(4): 666. CrossRef - Rhododendron aureum Georgi formed a special soil microbial community and competed with above‐ground plants on the tundra of the Changbai Mountain, China
Xiaolong Wang, Lin Li, Wei Zhao, Jiaxin Zhao, Xia Chen
Ecology and Evolution.2017; 7(18): 7503. CrossRef - Variations in bacterial and fungal communities through soil depth profiles in a Betula albosinensis forest
Can Du, Zengchao Geng, Qiang Wang, Tongtong Zhang, Wenxiang He, Lin Hou, Yueling Wang
Journal of Microbiology.2017; 55(9): 684. CrossRef - A comparison of species composition and community assemblage of secondary forests between the birch and pine-oak belts in the mid-altitude zone of the Qinling Mountains, China
Zongzheng Chai, Dexiang Wang
PeerJ.2016; 4: e1900. CrossRef
- New record and enzyme activity of four species in Penicillium section Citrina from marine environments in Korea
-
Myung Soo Park , Ji Eun Eom , Jonathan J. Fong , Young Woon Lim
-
J. Microbiol. 2015;53(4):219-225. Published online April 8, 2015
-
DOI: https://doi.org/10.1007/s12275-015-4700-9
-
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378
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0
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15
Crossref
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Abstract
PDF
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Several strains of Penicillium section Citrina were isolated
during a survey of fungi from marine environments along
the southern coast of Korea. Based on multigene phylogenetic
analyses (?tubulin and calmodulin) and morphological
characteristics, the 11 strains were identified as P. citrinum,
P. hetheringtonii, P. paxilli, P. sumatrense, P. terrigenum, and
P. westlingii. To understand the ecological role of these species,
we tested all strains for extracellular enzyme activity;
six strains representing four species showed ?glucosidase
activity. Four of the identified species ?P. hetheringtonii, P.
paxilli, P. terrigenum, and P. westlingii ?are new records
for Korea. For these new species records, we describe morphological
characteristics of the strains and compare results
to published data of type strains.
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Expanding the Inventory of Seven Unrecorded Marine
Penicillium
with Morphological Descriptions and Phenotypic Variability
Wonjun Lee, Ji Seon Kim, Sumin Jo, Young Woon Lim
Mycobiology.2025; 53(5): 648. CrossRef - Antiproliferative Activity Compounds Isolated from the Marine Fungus Penicillium terrigenum
Fan-ying Wu, Si-yuan Liu, Jie Feng
Pharmaceutical Chemistry Journal.2024; 58(5): 759. CrossRef - New Bioactive β-Resorcylic Acid Derivatives from the Alga-Derived Fungus Penicillium antarcticum KMM 4685
Elena V. Leshchenko, Alexandr S. Antonov, Gleb V. Borkunov, Jessica Hauschild, Olesya I. Zhuravleva, Yuliya V. Khudyakova, Alexander S. Menshov, Roman S. Popov, Natalya Yu Kim, Markus Graefen, Carsten Bokemeyer, Gunhild von Amsberg, Anton N. Yurchenko, Se
Marine Drugs.2023; 21(3): 178. CrossRef - Species Diversity of Penicillium in Southwest China with Discovery of Forty-Three New Species
Xin-Cun Wang, Zhi-Kang Zhang, Wen-Ying Zhuang
Journal of Fungi.2023; 9(12): 1150. CrossRef - Diversity and Dynamics of Marine Arenicolous Fungi in Three Seasides of the Korean Peninsula
Jun Won Lee, Chang Wan Seo, Wonjun Lee, Ji Seon Kim, Ki Hyeong Park, Yoonhee Cho, Young Woon Lim
Journal of Microbiology.2023; 61(1): 63. CrossRef - Titanium-based photocatalytic coatings for bacterial disinfection: The shift from suspended powders to catalytic interfaces
Farnaz Hosseini, Aymen Amine Assadi, Phuong Nguyen-Tri, Imran Ali, Sami Rtimi
Surfaces and Interfaces.2022; 32: 102078. CrossRef - Plastic-inhabiting fungi in marine environments and PCL degradation activity
Sung Hyun Kim, Jun Won Lee, Ji Seon Kim, Wonjun Lee, Myung Soo Park, Young Woon Lim
Antonie van Leeuwenhoek.2022; 115(12): 1379. CrossRef - Penicillium from Rhizosphere Soil in Terrestrial and Coastal Environments in South Korea
Myung Soo Park, Jun Won Lee, Sung Hyun Kim, Ji-Hyun Park, Young-Hyun You, Young Woon Lim
Mycobiology.2020; 48(6): 431. CrossRef - Biodiversity of Penicillium species from marine environments in Portugal and description of Penicillium lusitanum sp. nov., a novel species isolated from sea water
Micael F. M. Gonçalves, Liliana Santos, Bruno M. V. Silva, Alberto C. Abreu, Tânia F. L. Vicente, Ana C. Esteves, Artur Alves
International Journal of Systematic and Evolutionary Microbiology.2019; 69(10): 3014. CrossRef - Fungal Diversity and Enzyme Activity Associated with the Macroalgae, Agarum clathratum
Seobihn Lee, Myung Soo Park, Hanbyul Lee, Jae-Jin Kim, John A. Eimes, Young Woon Lim
Mycobiology.2019; 47(1): 50. CrossRef - New Records of Four Species Belonging to Eurotiales from Soil and Freshwater in Korea
Monmi Pangging, Thuong T. T. Nguyen, Hyang Burm Lee
Mycobiology.2019; 47(2): 154. CrossRef - Three Unrecorded Species Belonging toPenicilliumSectionSclerotiorafrom Marine Environments in Korea
Myung Soo Park, Dawoon Chung, Kyunghwa Baek, Young Woon Lim
Mycobiology.2019; 47(2): 165. CrossRef - A New record of four Penicillium species isolated from Agarum clathratum in Korea
Myung Soo Park, Seobihn Lee, Young Woon Lim
Journal of Microbiology.2017; 55(4): 237. CrossRef - Diversity and enzyme activity of Penicillium species associated with macroalgae in Jeju Island
Myung Soo Park, Seobihn Lee, Seung-Yoon Oh, Ga Youn Cho, Young Woon Lim
Journal of Microbiology.2016; 54(10): 646. CrossRef - Castles fall from inside: Evidence for dominant internal photo-catalytic mechanisms during treatment of Saccharomyces cerevisiae by photo-Fenton at near-neutral pH
Stefanos Giannakis, Cristina Ruales-Lonfat, Sami Rtimi, Sana Thabet, Pascale Cotton, César Pulgarin
Applied Catalysis B: Environmental.2016; 185: 150. CrossRef
Review
- Against friend and foe: Type 6 effectors in plant-associated bacteria
-
Choong-Min Ryu
-
J. Microbiol. 2015;53(3):201-208. Published online March 3, 2015
-
DOI: https://doi.org/10.1007/s12275-015-5055-y
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429
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32
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Abstract
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Bacterial secretion systems play critical roles in communication
with neighboring bacteria and in the modulation of
host immune responses via the secretion of small proteins
called effectors. Several secretion systems have been identified
and these are denoted types I-II. Of these, the type VI
secretion system (T6SS) and its effectors were only recently
elucidated. Most studies on the role and significance of the
T6SS and its effectors have focused on human pathogens.
In this review, type 6 effectors from plant-associated beneficial
and pathogenic bacteria are discussed, including effectors
from Agrobacterium tumefaciens, Dickeya dadanti, Rhizobium
leguminosarum, Pectobacterium atroseptium, Ralstonia
solanacearum, Pseudomonas syringae, Pseudomonas
fluorescens, and Pseudomonas protegens. Type 6 effectors act
in symbiosis, biofilm formation, virulence, and interbacterial
competition. Understanding the impact of type 6 effectors
on pathogenesis will contribute to the management of bacterial
pathogens in crop plants by allowing the manipulation
of intra and inter-specific interactions.
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Seonmi Yu, Jihee Kang, Eui-Hwan Chung, Yunho Lee
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High-resolution spatial and genomic characterization of coral-associated microbial aggregates in the coral
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L. A. Lomovatskaya, A. S. Romanenko
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Alvaro Salinero-Lanzarote, Alba Pacheco-Moreno, Lucía Domingo-Serrano, David Durán, Ernesto Ormeño-Orrillo, Esperanza Martínez-Romero, Marta Albareda, José Manuel Palacios, Luis Rey
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Anne-Kathrin Dietel, Martin Kaltenpoth, Christian Kost
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Thao Thi Nguyen, Hyun-Hee Lee, Inmyoung Park, Young-Su Seo
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Research Support, U.S. Gov't, Non-P.H.S.
- Multiple cellular roles of Neurospora crassa plc-1, splA2, and cpe-1 in regulation of cytosolic free calcium, carotenoid accumulation, stress responses, and acquisition of thermotolerance§
-
Ananya Barman , Ranjan Tamuli
-
J. Microbiol. 2015;53(4):226-235. Published online January 31, 2015
-
DOI: https://doi.org/10.1007/s12275-015-4465-1
-
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365
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21
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Abstract
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Phospholipase C1 (PLC1), secretory phospholipase A2 (sPLA2)
and Ca2+/H+ exchanger proteins regulate calcium signaling
and homeostasis in eukaryotes. In this study, we investigate
functions for phospholipase C1 (plc-1), sPLA2 (splA2) and a
Ca2+/H+ exchanger (cpe-1) in the filamentous fungus Neurospora
crassa. The Δplc-1, ΔsplA2, and Δcpe-1 mutants exhibited
a growth defect on medium supplemented with the
divalent ionophore A23187, suggesting that these genes might
play a role in regulation of cytosolic free Ca2+ concentration
([Ca2+]c) in N. crassa. The strains lacking plc-1, splA2, and
cpe-1 possessed higher carotenoid content than wild type at
8°C, 22°C, and 30°C, and showed increased ultraviolet (UV)-
survival under conditions that induced carotenoid accumulation.
Moreover, Δplc-1, ΔsplA2, and Δcpe-1 mutants showed
reduced survival rate under hydrogen peroxide-induced oxidative
stress and induced thermotolerance after exposure
to heat shock temperatures. Thus, this study revealed multiple
cellular roles for plc-1, splA2, and cpe-1 genes in regulation
of [Ca2+]c, carotenoid accumulation, survival under
stress conditions, and acquisition of thermotolerance induced
by heat shock.
-
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Research Support, Non-U.S. Gov'ts
- Benzaldehyde as an insecticidal, antimicrobial, and antioxidant compound produced by Photorhabdus temperata M1021
-
Ihsan Ullah , Abdul Latif Khan , Liaqat Ali , Abdur Rahim Khan , Muhammad Waqas , Javid Hussain , In-Jung Lee , Jae-Ho Shin
-
J. Microbiol. 2015;53(2):127-133. Published online January 28, 2015
-
DOI: https://doi.org/10.1007/s12275-015-4632-4
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Abstract
-
The Photorhabdus temperata M1021 secretes toxic compounds
that kill their insect hosts by arresting immune
responses. Present study was aimed to purify the insecticidal
and antimicrobial compound(s) from the culture extract of
P. temperata M1021 through bioassay guided fractionation.
An ethyl acetate (EtOAc) extract of the P. temperata M1021
exhibited 100% mortality in Galleria mellonella larvae within
72 h. In addition, EtOAc extract and bioactive compound 1
purified form the extract through to column chromatography,
showed phenol oxidase inhibition up to 60% and
80% respectively. The analysis of 1H and 13C NMR spectra
revealed the identity of pure compound as "benzaldehyde".
The benzaldehyde showed insecticidal activity against G.
mellonella in a dose-dependent manner and 100% insect
mortality was observed at 108 h after injection of 8 mM
benzaldehyde. In a PO inhibition assay, 4, 6, and 8 mM concentrations
of benzaldehyde were found to inhibit PO activity
about 15%, 42%, and 80% respectively. In addition,
nodule formation was significantly (P < 0.05) inhibited by 4,
6, and 8 mM of benzaldehyde as compare to control. Moreover,
benzaldehyde was found to have great antioxidant activity
and maximum antioxidant activity was 52.9% at 8 mM
benzaldehyde as compare to control. Antimicrobial activity
was assessed by MIC values ranged from 6 mM 10 mM for
bacterial strains and 8 mM to 10 mM for fungal strains. The
results
suggest that benzaldehyde could be applicable for
developing novel insecticide for agriculture use.
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- Crystal structure of the bacterial type VI secretion system component TssL from Vibrio cholerae
-
Jeong Ho Chang , Yeon-Gil Kim
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J. Microbiol. 2015;53(1):32-37. Published online December 4, 2014
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DOI: https://doi.org/10.1007/s12275-015-4539-0
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334
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0
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10
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Abstract
PDF
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The type VI secretion system (T6SS), commonly found in
Gram-negative bacteria, is responsible for exporting effector
proteins. The T6SS has been reported to be cytotoxic to host
cells. While the components and assembly of the T6SS complex
have been largely assessed, structural data on T6SS components
from virulent bacteria is remarkably insufficient.
Here, we report the crystal structure of Vibrio cholerae TssL
(VcTssL), a core component of T6SS. In spite of a relatively
low sequence identity, the overall structure of VcTssL is largely
similar to those from other bacterial homologs except
for several differences found in local structural elements. A
unique feature attributed to the C-terminal fragment of Vc-
TssL is a crystallographic artifact. This incidental feature of
VcTssL may provide insights into screening of molecular
partners for the cytoplasmic domain of TssL. Additionally,
our results may help in the design of molecular probes for a
detailed understanding of the functional relationship between
TssL and other T6SS components.
-
Citations
Citations to this article as recorded by

- Structural Characterization of TssL from Acinetobacter baumannii: a Key Component of the Type VI Secretion System
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Hui Zhang , Junxi Zheng , Li Yi , Yue Li , Zhe Ma , Hongjie Fan , Chengping Lu
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J. Microbiol. 2014;52(11):963-969. Published online October 31, 2014
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DOI: https://doi.org/10.1007/s12275-014-4311-x
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339
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0
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12
Crossref
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Abstract
PDF
-
Streptococcus suis, a major swine pathogen, is an emerging zoonotic agent that causes meningitis and septic shock. Bacterial cell wall and secreted proteins are often involved in interactions with extracellular matrix proteins (ECMs), which play important roles in the initial steps of pathogenesis. In this study, 2D SDS-PAGE, western blotting-based binding affinity measurements, and microtiter plate binding assays were used to identify cell wall and secreted proteins from S. suis that interact with fibronectin and collagen type І. We identified six proteins from S. suis, including three proteins (translation elongation factor G, oligopeptide-binding protein
OppA precursor, and phosphoglycerate mutase) that show both fibronectin and collagen type І binding activity. To the best of our knowledge, these three newly identified proteins had no previously reported fibronectin or collagen type І binding activity. Overall, the aim in this study was to identify proteins with ECM binding activity from S. suis and it represents the first report of six new proteins from S. suis
that interact with fibronectin or collagen type І.
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Citations
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Yao Lin , Li Fengling , Wang Lianzhu , Zhai Yuxiu , Jiang Yanhua
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J. Microbiol. 2014;52(11):970-975. Published online October 3, 2014
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DOI: https://doi.org/10.1007/s12275-014-4323-6
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384
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32
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Abstract
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VP2 is the minor structural protein of noroviruses (NoV) and may function in NoV particle stability. To determine the function of VP2 in the stability of the NoV particle, we constructed and purified two kinds of virus-like particles (VLPs), namely, VLPs (VP1) and VLPs (VP1+VP2), from Sf9 cells infected with recombinant baculoviruses by using a Bac-to-Bac? baculovirus expression system. The two kinds of VLPs were treated with different phosphate buffers (pH 2 to pH 8); the secondary structure was then analyzed by far UV circular dichroism (CD) spectroscopy. Results showed
that significant disruptions of the secondary structure of proteins were not observed at pH 2 to pH 7. At pH 8, the percentages of α-helix, β-sheet, and β-turn in VLPs (VP1) were decreased from 11% to 8%, from 37% to 32%, and from 20% to 16%, respectively. The percentage of coil was increased from 32% to 44%. By contrast, the percentages of α-helix, β-sheet, and β-turn in VLPs (VP1+VP2) were decreased
from 11% to 10%, from 37% to 35%, and from 20% to 19%, respectively. The percentage of coil was increased from 32% to 36%. VLPs (VP1+VP2) was likely more stable than VLPs (VP1), as indicated by the percentage of the secondary
structures analyzed by CD. These results suggested that VP2 could stabilize the secondary structure of VLPs under alkaline pH conditions. This study provided novel
insights into the molecular mechanism of the function of VP2 in the stability of NoV particles.
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Journal Article
- Aeration Effects on Metabolic Events during Sporulation of Bacillus thuringiensis
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Mohammad H. Sarrafzadeh , Sabine Schorr-Galindo , Hyun-Joon La , Hee-Mock Oh
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J. Microbiol. 2014;52(7):597-603. Published online June 28, 2014
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DOI: https://doi.org/10.1007/s12275-014-3547-9
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Abstract
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The metabolism of Bacillus thuringiensis during its sporulation process was investigated under different concentrations of oxygen. At the beginning of sporulation, the aeration conditions were regulated to obtain different oxygen transfer rates (OTR) in four separate fermentations, representing interrupted, limited, non-limited, and saturated oxygenation, respectively. A higher OTR resulted in a higher pH, up to about 9 in the case of saturated oxygenation, while the interrupted oxygenation resulted in a significantly acidic culture. In contrast, the absence of oxygen resulted in rapid sporangia lysis and caused acidification of the medium, indicating a distinctly different sporangia composition and different metabolism. The bacterium also showed different CO2 production rates during sporulation, although amaximum point was observed in every case.With a higher OTR, the maximal value was observed after a longer time and at a lower value (40, 26, and 13 mmol/L/h for limited, non-limited, and saturated cases, respectively). Despite the exhaustion of glucose prior to the sporulation phase, the interrupted oxygenation resulted in acetate, lactate, and citrate in the medium with a maximum concentration of 4.8, 1.3, and 5.0 g/L, respectively. Notwithstanding, while the metabolic events differed visibly in the absence of oxygen, once sporulation was triggered, it was completed, even in the case of an interrupted oxygen supply.
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- The Sporulation Process of Bacillus thuringiensis as an Adaptive Response in Different Culture Systems: Analysis of the Respiratory Activity, spoIIA/cry1Ac Expression and Cell Aggregation
J. Lima-Pérez, M. López-Pérez, D. G. Pérez-Solís, J. G. Rocha-Estrada, G. Viniegra-González, O. Loera
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Research Support, Non-U.S. Gov'ts
- Comparative Phylogenetic Relationships and Genetic Structure of the Caterpillar Fungus Ophiocordyceps sinensis and Its Host Insects Inferred from Multiple Gene Sequences
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Qing-Mei Quan , Qing-Xia Wang , Xue-Li Zhou , Shan Li , Xiao-Ling Yang , Yun-Guo Zhu , Zhou Cheng
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J. Microbiol. 2014;52(2):99-105. Published online February 1, 2014
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DOI: https://doi.org/10.1007/s12275-014-3391-y
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Ophiocordyceps sinensis (Ascomycota: Ophiocordycipitaceae) is a native fungal parasite of Hepialidae caterpillars and one of the most economically important medicinal caterpillar fungi in China. However, little is known about the phylogenetic and evolutionary relationships between O. sinensis and its host insects. In this study, nuclear ITS and β-tubulin sequences from O. sinensis and mitochondrial COI, COII, and Cytb sequences from its hosts were analyzed across 33 populations sampled from five regions in China. Phylogenetically, both O. sinensis and its hosts were divided into three geographically correlated clades, and their phylogenies were congruent. Analysis of molecular variance and calculated coefficients of genetic differentiation revealed significant genetic divergence among the clades within both O. sinensis (FST=0.878, NST=0.842) and its hosts (FST=0.861, NST=0.816). Estimated gene flow was very low for O. sinensis (Nm=0.04) and the host insects (Nm=0.04) among these three clades. Mantel tests demonstrated a significant correlation (P<0.01) between the genetic distances for O. sinensis and its hosts, as well as a significant association (P<0.05) between geographic and genetic distances in both. The similar phylogenetic relationships, geographic distributions, and genetic structure and differentiation between O. sinensis and its hosts imply that they have coevolved.
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- Sequential Immunosuppressive Activities of Bacterial Secondary Metabolites from the Entomopahogenic Bacterium Xenorhabdus nematophila
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Seonghyeon Eom , Youngjin Park , Yonggyun Kim
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J. Microbiol. 2014;52(2):161-168. Published online February 1, 2014
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DOI: https://doi.org/10.1007/s12275-014-3251-9
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360
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The entomopathogenic bacterium Xenorhabdus nematophila secretes at least eight bacterial metabolites that play crucial roles suppressing target insect immune responses by inhibiting eicosanoid biosynthesis. We analyzed sequential changes in bacterial metabolite production during bacterial growth and analyzed their individual immunosuppressive activities against the insect host, Spodoptera exigua. X. nematophila exhibited a typical bacterial growth pattern in both insect host and culture medium, and eight metabolites were secreted at different time points. At the early growth phase (6–12 h), Ac-FGV and PHPP were detected in significant amounts in the culture broth. At this early phase, both Ac-FGV (18 μg/ml) and oxindole (110 μg/ml) levels significantly inhibited phenoloxidase and phospholipase A2 activities in S. exigua hemolymph. At the late growth phase (12–36 h), all eight metabolites were detected at significant levels (10–140 μg/ml) in the culture broth and were sufficient to induce hemocyte toxicity. These results suggest that X. nematophila sequentially produces immunosuppressive metabolites that might sequentially and cooperatively inhibit different steps of insect immune responses.
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Archives of Insect Biochemistry and Physiology.2018;[Epub] CrossRef - Identification and bacterial characteristics of Xenorhabdus hominickii ANU101 from an entomopathogenic nematode, Steinernema monticolum
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Applied and Environmental Microbiology.2017;[Epub] CrossRef - Effects of an entomopathogen nematode on the immune response of the insect pest red palm weevil: Focus on the host antimicrobial response
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Youngjin Park, Jin Kyo Jung, Yonggyun Kim
Journal of Economic Entomology.2016; 109(3): 1086. CrossRef - Microbiology of sugar‐rich environments: diversity, ecology and system constraints
Bart Lievens, John E. Hallsworth, Maria I. Pozo, Zouhaier Ben Belgacem, Andrew Stevenson, Kris A. Willems, Hans Jacquemyn
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Youngjin Park
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Seonghyeon Eom, Youngjin Park, Yonggyun Kim
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Susana Ramos, Ana Custódio, Henrique Silveira
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- Characterization of Streptococcus pneumoniae N-Acetylglucosamine-6-Phosphate Deacetylase as a Novel Diagnostic Marker
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Chi-Won Choi , Hee-Young An , Yong Ju Lee , Yeol Gyun Lee , Sung Ho Yun , Edmond Changkyun Park , Yeonhee Hong , Gun-Hwa Kim , Jae-Eun Park , Sun Jong Baek , Hyun Sik Kim , Seung Il Kim
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J. Microbiol. 2013;51(5):659-664. Published online October 31, 2013
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DOI: https://doi.org/10.1007/s12275-013-3451-8
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Abstract
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The identification of novel diagnostic markers of pathogenic bacteria is essential for improving the accuracy of diagnoses and for developing targeted vaccines. Streptococcus pneumoniae is a significant human pathogenic bacterium that causes pneumonia. N-acetylglucosamine-6-phosphate deacetylase (NagA) was identified in a protein mixture secreted by S. pneumoniae and its strong immunogenicity was confirmed in an immuno-proteomic assay against the anti-serum of the secreted protein mixture. In this study, recombinant S. pneumoniae NagA protein was expressed and purified to analyze its protein characteristics, immunospecificity, and immunogenicity, thereby facilitating its evaluation as a novel diagnostic marker for S. pneumoniae. Mass spectrometry analysis showed that S. pneumoniae NagA contains four internal disulfide bonds and that it does not undergo posttranslational modification. S. pneumoniae NagA antibodies successfully detected NagA from different S. pneumoniae strains, whereas NagA from other pathogenic bacteria species was not detected. In addition, mice infected with S. pneumoniae generated NagA antibodies in an effective manner. These results suggest that NagA has potential as a novel diagnostic marker for S. pneumoniae because of its high immunogenicity and immunospecificity.
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- Multi-omic profiling to assess the effect of iron starvation inStreptococcus pneumoniaeTIGR4
Irene Jiménez-Munguía, Mónica Calderón-Santiago, Antonio Rodríguez-Franco, Feliciano Priego-Capote, Manuel J. Rodríguez-Ortega
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- NOTE] Comparative Assessment of the Intracellular Survival of the Burkholderia pseudomallei bopC Mutant
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Varintip Srinon , Sunsiree Muangman , Nithima Imyaem , Veerachat Muangsombut , Natalie R. Lazar Adler , Edouard E. Galyov , Sunee Korbsrisate
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J. Microbiol. 2013;51(4):522-526. Published online August 30, 2013
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DOI: https://doi.org/10.1007/s12275-013-2557-3
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233
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Abstract
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Burkholderia pseudomallei, the causative agent of melioidosis, is a Gram-negative saprophytic bacterium capable of surviving within phagocytic cells. To assess the role of BopC (a type III secreted effector protein) in the pathogenesis of B. pseudomallei, a B. pseudomallei bopC mutant was used to infect J774A.1 macrophage-like cells. The bopC mutant showed significantly reduced intracellular survival in infected macrophages compared to wild-type B. pseudomallei. In addition, the bopC mutant displayed delayed escape from endocytic vesicles compared with the wild-type strain. This indicates that BopC is important, and at least in part, needed for intracellular survival of B. pseudomallei.
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- Inhibition of macrophage infectivity potentiator in Burkholderia pseudomallei suppresses pro-inflammatory responses in murine macrophages
Jua Iwasaki, Nicole M. Bzdyl, Dion J. M. Lin-Sullivan, Nicolas J. Scheuplein, Maria Emilia Dueñas, Emma de Jong, Nicholas J. Harmer, Ulrike Holzgrabe, Mitali Sarkar-Tyson
Frontiers in Cellular and Infection Microbiology.2024;[Epub] CrossRef - Transitioning from Soil to Host: Comparative Transcriptome Analysis Reveals the Burkholderia pseudomallei Response to Different Niches
Ahmad-Kamal Ghazali, Mohd Firdaus-Raih, Asqwin Uthaya Kumar, Wei-Kang Lee, Chee-Choong Hoh, Sheila Nathan, Fernando Navarro-Garcia
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Nicole M. Bzdyl, Clare L. Moran, Justine Bendo, Mitali Sarkar-Tyson
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Natnaree Saiprom, Tanes Sangsri, Sarunporn Tandhavanant, Sineenart Sengyee, Rungnapa Phunpang, Anucha Preechanukul, Uriwan Surin, Apichai Tuanyok, Ganjana Lertmemongkolchai, Wasun Chantratita, T. Eoin West, Narisara Chantratita, Alfredo G. Torres
PLOS Neglected Tropical Diseases.2020; 14(9): e0008590. CrossRef -
Burkholderia pseudomallei pathogenesis and survival in different niches
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Varintip Srinon, Patoo Withatanung, Somjit Chaiwattanarungruengpaisan, Metawee Thongdee, Chatruthai Meethai, Joanne M. Stevens, Richard W. Titball, Sunee Korbsrisate
Scientific Reports.2020;[Epub] CrossRef - Role of Toll-Like Receptor 5 (TLR5) in Experimental Melioidosis
Emma Birnie, Tassili A. F. Weehuizen, Jacqueline M. Lankelma, Hanna K. de Jong, Gavin C. K. W. Koh, Miriam H. P. van Lieshout, Joris J. T. H. Roelofs, Andries E. Budding, Alex F. de Vos, Tom van der Poll, W. Joost Wiersinga, Vincent B. Young
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Charles W. Vander Broek, Joanne M. Stevens
Frontiers in Cellular and Infection Microbiology.2017;[Epub] CrossRef - Quantitative Proteomic Analysis of Burkholderia pseudomallei Bsa Type III Secretion System Effectors Using Hypersecreting Mutants
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Yahua Chen, Imke Schröder, Christopher T French, Artur Jaroszewicz, Xiao Jie Yee, Boon-Eng Teh, Isabelle J Toesca, Jeff F Miller, Yunn-Hwen Gan
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- Saccharomyces cerevisiae Can Secrete Sapp1p Proteinase of Candida parapsilosis But Cannot Use It for Efficient Nitrogen Acquisition
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Zuzana Vinterová , Václava Bauerová , Ji , Hana Sychrová , Olga Hru , Iva Pichová
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J. Microbiol. 2013;51(3):336-344. Published online June 28, 2013
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DOI: https://doi.org/10.1007/s12275-013-2422-4
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274
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Secreted aspartic proteinase Sapp1p of Candida parapsilosis represents one of the factors contributing to the pathogenicity of the fungus. The proteinase is synthesized as an inactive pre-pro-enzyme, but only processed Sapp1p is secreted into extracellular space. We constructed a plasmid containing the SAPP1 coding sequence under control of the ScGAL1 promoter and used it for proteinase expression in a Saccharomyces cerevisiae kex2Δ mutant. Because Sapp1p maturation depends on cleavage by Kex2p proteinase, the kex2Δ mutant secreted only the pro-form of Sapp1p. Characterization of this secreted proteinase form revealed that the Sapp1p signal peptide consists of 23 amino acids. Additionally, we prepared a plasmid with the SAPP1 coding sequence under control of its authentic CpSAPP1 promoter, which contains two GATAA motifs. While in C. parapsilosis SAPP1 expression is repressed by good low molecular weight nitrogen sources (e.g., ammonium ions), S. cerevisiae cells harboring this plasmid secreted a low concentration of active proteinase regardless of the type of nitrogen source used. Quantitative real-time PCR analysis of a set of genes related to nitrogen metabolism and uptake (GAT1, GLN3, STP2, GAP1, OPT1, and PTR2) obtained from S. cerevisiae cells transformed with either plasmid encoding SAPP1 under control of its own promoter or empty vector and cultivated in media containing various nitrogen sources also suggested that SAPP1 expression can be connected with the S. cerevisiae regulatory network. However, this regulation occurs in a different manner than in C. parapsilosis.
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- Advances in recombinant protease production: current state and perspectives
Xiufang Liu, Mulin Lian, Mouming Zhao, Mingtao Huang
World Journal of Microbiology and Biotechnology.2024;[Epub] CrossRef - Pathogenic Candida species differ in the ability to grow at limiting potassium concentrations
B. Hušeková, H. Elicharová, H. Sychrová
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- The α-Barrel Tip Region of Escherichia coli TolC Homologs of Vibrio vulnificus Interacts with the MacA Protein to Form the Functional Macrolide-Specific Efflux Pump MacAB-TolC
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Minho Lee , Hyun-Lee Kim , Saemee Song , Minju Joo , Seunghwa Lee , Daeyoung Kim , Yoonsoo Hahn , Nam-Chul Ha , Kangseok Lee
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J. Microbiol. 2013;51(2):154-159. Published online April 27, 2013
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DOI: https://doi.org/10.1007/s12275-013-2699-3
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231
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20
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Abstract
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TolC and its homologous family of proteins are outer membrane factors that are essential for exporting small molecules and toxins across the outer membrane in Gram-negative bacteria. Two open reading frames in the Vibrio vulnificus genome that encode proteins homologous to Escherichia coli TolC, designated TolCV1 and TolCV2, have 51.3% and 29.6% amino acid identity to TolC, respectively. In this study, we show that TolCV1 and TolCV2 functionally and physically interacted with the membrane fusion protein, MacA, a component of the macrolide-specific MacAB-TolC pump of E. coli. We further show that the conserved residues located at the aperture tip region of the α-hairpin of TolCV1 and TolCV2 played an essential role in the formation of the functional MacAB-TolC pump using site-directed mutational analyses. Our findings suggest that these outer membrane factors have
conserved tip-to-tip interaction with the MacA membrane fusion protein for action of the drug efflux pump in Gramnegative bacteria.
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Citations
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- Functions and Regulation of the Outer Membrane Protein TolC in Vibrio Species
Yue Gong, Chunxia Liu, Xin Tian, Young Ran Kim
ACS Infectious Diseases.2025; 11(7): 1756. CrossRef - ATP-binding cassette (ABC) transporters: structures and roles in bacterial pathogenesis
Shu Sian How, Sheila Nathan, Su Datt Lam, Sylvia Chieng
Journal of Zhejiang University-SCIENCE B.2025; 26(1): 58. CrossRef -
TolCV1 inhibition by NPPB renders
Vibrio vulnificus
less virulent and more susceptible to antibiotics
Yue Gong, Rui Jiang, Rui Hong Guo, Se Jin Jo, Hyeongju Jeong, Kyuho Moon, Joon Haeng Rhee, Young Ran Kim, Anne-Catrin Uhlemann
Antimicrobial Agents and Chemotherapy.2025;[Epub] CrossRef - Bacterial efflux pump OMPs as vaccine candidates against multidrug-resistant Gram-negative bacteria
Thaynara O Silva, Ana Carolina S Bulla, Bárbara A Teixeira, Vinnicius Machado Schelk Gomes, Thiago Raposo, Luiza S Barbosa, Manuela Leal da Silva, Lilian O Moreira, Priscilla C Olsen
Journal of Leukocyte Biology.2024; 116(6): 1237. CrossRef - ABC Transporters in Bacterial Nanomachineries
Florestan L. Bilsing, Manuel T. Anlauf, Eymen Hachani, Sakshi Khosa, Lutz Schmitt
International Journal of Molecular Sciences.2023; 24(7): 6227. CrossRef - CarRS Two-Component System Essential for Polymyxin B Resistance of Vibrio vulnificus Responds to Multiple Host Environmental Signals
Duhyun Ko, Dayoung Sung, Tae Young Kim, Garam Choi, Ye-Ji Bang, Sang Ho Choi, Sandeep Tamber
Microbiology Spectrum.2023;[Epub] CrossRef - Structural Insights into Transporter-Mediated Drug Resistance in Infectious Diseases
Jonathan Kim, Rosemary J. Cater, Brendon C. Choy, Filippo Mancia
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Ilyas Alav, Jessica Kobylka, Miriam S. Kuth, Klaas M. Pos, Martin Picard, Jessica M. A. Blair, Vassiliy N. Bavro
Chemical Reviews.2021; 121(9): 5479. CrossRef - TolCV1 Has Multifaceted Roles During Vibrio vulnificus Infection
Yue Gong, Rui Hong Guo, Joon Haeng Rhee, Young Ran Kim
Frontiers in Cellular and Infection Microbiology.2021;[Epub] CrossRef - DIDS inhibits Vibrio vulnificus cytotoxicity by interfering with TolC-mediated RtxA1 toxin secretion
Rui Hong Guo, Yue Gong, Soo Young Kim, Joon Haeng Rhee, Young Ran Kim
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Inseong Jo, Jin-Sik Kim, Yongbin Xu, Jaekyung Hyun, Kangseok Lee, Nam-Chul Ha
Journal of Microbiology.2019; 57(3): 185. CrossRef - Structure of the MacAB–TolC ABC-type tripartite multidrug efflux pump
Anthony W. P. Fitzpatrick, Salomé Llabrés, Arthur Neuberger, James N. Blaza, Xiao-Chen Bai, Ui Okada, Satoshi Murakami, Hendrik W. van Veen, Ulrich Zachariae, Sjors H. W. Scheres, Ben F. Luisi, Dijun Du
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Dijun Du, Hendrik W. van Veen, Ben F. Luisi
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Saemee Song, Jin-Sik Kim, Kangseok Lee, Nam-Chul Ha
Journal of Microbiology.2015; 53(6): 355. CrossRef - Functional analysis of Vibrio vulnificus RND efflux pumps homologous to Vibrio cholerae VexAB and VexCD, and to Escherichia coli AcrAB
Seunghwa Lee, Ji-Hyun Yeom, Sojin Seo, Minho Lee, Sarang Kim, Jeehyeon Bae, Kangseok Lee, Jihwan Hwang
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Hye-Jee Park, Sang-Won Lee, Sang-Wook Han
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Seunghwa Lee, Saemee Song, Kangseok Lee
Current Microbiology.2014; 68(6): 729. CrossRef - Interaction between the α-barrel tip of Vibrio vulnificus TolC homologs and AcrA implies the adapter bridging model
Seunghwa Lee, Saemee Song, Minho Lee, Soonhye Hwang, Ji-Sun Kim, Nam-Chul Ha, Kangseok Lee
Journal of Microbiology.2014; 52(2): 148. CrossRef - Interaction Mediated by the Putative Tip Regions of MdsA and MdsC in the Formation of a Salmonella-Specific Tripartite Efflux Pump
Saemee Song, Soonhye Hwang, Seunghwa Lee, Nam-Chul Ha, Kangseok Lee, Eric Cascales
PLoS ONE.2014; 9(6): e100881. CrossRef
- Secretion of Truncated Recombinant Rabies Virus Glycoprotein with Preserved Antigenic Properties Using a Co-Expression System in Hansenula polymorpha
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Weidong Qian , Frank Aguilar , Ting Wang , Bingsheng Qiu
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J. Microbiol. 2013;51(2):234-240. Published online April 27, 2013
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DOI: https://doi.org/10.1007/s12275-013-2337-0
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291
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8
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Rabies virus infection remains a serious public health threat in the developing world, where cost-concerns make widescale public health interventions impractical. The development of novel and inexpensive ELISA diagnostic antigens is critical in early detection and prevention of complications. The transmembrane glycoprotein (G) of rabies virus (RV) contains an external domain capable of inducing the synthesis of anti-rabies, virus-neutralizing antibodies, in infected or immunized hosts. In our study, the external G domain was synthesized and fused in-frame with a polyhistidine-tag coding sequence present in the expression plasmid. Soluble
truncated recombinant G was secreted in Hansenula polymorpha (H. polymorpha) using H. polymorpha-derived calnexin (HpCNE1) overproduction and found to be correctly N-glycosylated. The truncated recombinant G was purified from cell culture supernatant by Ni-agarose affinity chromatography and when compared with the full-length glycoprotein, found to be similarly immunogenic in vaccinated rabbits. These results subsequently led us to explore the potential of truncated recombinant G as a diagnostic antigen in ELISA. Our results show that the truncated recombinant G
can detect antibodies directed to both whole virion and native glycoprotein. More sophisticated applications of truncated recombinant G would profit from the correctly N-glycosylated and soluble monomer.
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Review
- REVIEW] The Role of Type III Secretion System 2 in Vibrio parahaemolyticus Pathogenicity
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Hyeilin Ham , Kim Orth
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J. Microbiol. 2012;50(5):719-725. Published online November 4, 2012
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DOI: https://doi.org/10.1007/s12275-012-2550-2
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188
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Abstract
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Vibrio parahaemolyticus, a Gram-negative marine bacterial pathogen, is emerging as a major cause of food-borne illnesses worldwide due to the consumption of raw seafood leading to diseases including gastroenteritis, wound infection, and septicemia. The bacteria utilize toxins and type III secretion system (T3SS) to trigger virulence. T3SS is a multi-subunit needle-like apparatus used to deliver bacterial proteins, termed effectors, into the host cytoplasm which then target various eukaryotic signaling pathways. V. parahaemolyticus carries two T3SSs in each of its two chromosomes, named T3SS1 and T3SS2, both of which play crucial yet distinct roles during infection: T3SS1 causes cytotoxicity whereas T3SS2 is mainly associated with enterotoxicity. Each T3SS secretes a unique set of effectors that contribute to virulence by acting on different host targets and serving different functions. Emerging studies on T3SS2 of V. parahaemolyticus, reveal its regulation, translocation, discovery, characterization of its effectors, and development of animal models to understand the enterotoxicity. This review on recent findings for T3SS2 of V. parahaemolyticus highlights a novel mechanism of invasion that appears to be conserved by other marine bacteria.
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Nurbaya, Ince Ayu K. Kadriah, Muharijadi Atmomarsono, Muliani, Hilal Anshary
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Frontiers in Cellular and Infection Microbiology.2021;[Epub] CrossRef - Secretion Systems in Gram-Negative Bacterial Fish Pathogens
Sophanit Mekasha, Dirk Linke
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Food Microbiology.2019; 84: 103270. CrossRef - Piper betel Compounds Piperidine, Eugenyl Acetate, and Chlorogenic Acid Are Broad-Spectrum Anti-Vibrio Compounds that Are Also Effective on MDR Strains of the Pathogen
Erika Acosta-Smith, Nidia Leon-Sicairos, Sandeep Tiwari, Hector Flores-Villaseñor, Adrian Canizalez-Roman, Ranjith Kumavath, Preetam Ghosh, Vasco Azevedo, Debmalya Barh
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Fitua Al-Saedi, Suhad Faisal Hatem Al-Mugdadi, Mayssaa E Abdalah
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Siqi Wang, Zhaohuan Zhang, Pradeep K. Malakar, Yingjie Pan, Yong Zhao
Frontiers in Microbiology.2019;[Epub] CrossRef - The extracellular proteases produced by Vibrio parahaemolyticus
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Nicholas Petronella, Jennifer Ronholm
Microbial Genomics
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Reshma Silvester, Ajin Madhavan, Ally Antony, Deborah Alexander, Sudha Santha, Bini Francis, Mohamed Hatha
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Applied and Environmental Microbiology.2016; 82(4): 1102. CrossRef - Complete genome of Vibrio parahaemolyticus FORC014 isolated from the toothfish
Sojin Ahn, Han Young Chung, Sooyeon Lim, Kwondo Kim, Suyeon Kim, Eun Jung Na, Kelsey Caetano-Anolles, Ju-Hoon Lee, Sangryeol Ryu, Sang Ho Choi, Heebal Kim
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Lei Gao, Yi qin Deng, Chang Chen, Chang wen Ke, Bo sheng Li, Yun ying Long, Zhu hong Liu, Lu Wei
Foodborne Pathogens and Disease.2016; 13(6): 333. CrossRef - Genomic evidence of adaptive evolution in emergent Vibrio parahaemolyticus ecotypes
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Tomotaka Tanabe, Katsushiro Miyamoto, Hiroshi Tsujibo, Shigeo Yamamoto, Tatsuya Funahashi, Olga Ozoline
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Hyeon Jin Noh, Sara Nagami, Min Jung Kim, Juri Kim, Na Kyung Lee, Kyu-Ho Lee, Soon-Jung Park
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Rongzhi Wang, Yanfang Zhong, Xiaosong Gu, Jun Yuan, Abdullah F. Saeed, Shihua Wang
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Mi-Ae Lee, Jeong-A Kim, Yu Jin Yang, Mee-Young Shin, Soon-Jung Park, Kyu-Ho Lee
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Marcela de Souza Santos, Kim Orth, Jeff F. Miller
mBio.2014;[Epub] CrossRef - Effectors of animal and plant pathogens use a common domain to bind host phosphoinositides
Dor Salomon, Yirui Guo, Lisa N. Kinch, Nick V. Grishin, Kevin H. Gardner, Kim Orth
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Guiming Xiang, Xiaoyun Pu, Dongneng Jiang, Linlin Liu, Chang Liu, Xiaobo Liu, Richard C. Willson
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Research Support, Non-U.S. Gov't
- NOTE] Construction and Characterisation of an Antifungal Recombinant Bacillus thuringiensis with an Expanded Host Spectrum
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Qin Liu , Jong Yul Roh , Yong Wang , Jae Young Choi , Xue Ying Tao , Jae Su Kim , Yeon Ho Je
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J. Microbiol. 2012;50(5):874-877. Published online November 4, 2012
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DOI: https://doi.org/10.1007/s12275-012-2201-7
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185
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6
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Abstract
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A novel antifungal Bacillus thuringiensis strain 19–22, ssp. kurstaki (H3a3b3c), was characterised. This strain included cry1Aa, cry1Ab, cry1Ac, and cry1D, which have high insecticidal activities against lepidopteran larvae other than Spodoptera exigua. To expand the host spectrum, a cry1E gene whose product is active against S. exigua was introduced into the isolate. The transformant successfully expressed the Cry1E protein without any loss of its original antifungal activities. These results indicate that this recombinant strain exhibits dual activities and may be used as an integrated control agent to control plant diseases and insect pests.
Journal Article
- Disruption of SCO5461 Gene Coding for a Mono-ADP-Ribosyltransferase Enzyme Produces a Conditional Pleiotropic Phenotype Affecting Morphological Differentiation and Antibiotic Production in Streptomyces coelicolor
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Krisztina Szirák , Judit Keser , Sándor Biró , Iván Schmelczer , György Barabás , András Penyige
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J. Microbiol. 2012;50(3):409-418. Published online June 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-1440-y
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182
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9
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The SCO5461 gene of Streptomyces coelicolor A3(2) codes for an ADP-ribosyltransferase enzyme that is predicted to be a transmembrane protein with an extracellular catalytic domain. PCR-targeted disruption of the gene resulted in a mutant that differentiated normally on complex SFM medium; however, morphological differentiation in minimal medium was significantly delayed and this phenotype was even more pronounced on osmotically enhanced minimal medium. The mutant did not sporulate when it was grown on R5 medium, however the normal morphological differentiation was restored when the strain was cultivated beside the wild-type S. coelicolor M145 strain. Comparison of the pattern of ADP-ribosylated proteins showed a difference between the mutant and the wild type, fewer modified proteins were present in the cellular crude extract of the mutant strain. These results support our previous suggestions that protein ADP-ribosylation is involved in the regulation of differentiation and antibiotic production and secretion in Streptomyces.
Review
- REVIEW] Recent Findings about the Yersinia enterocolitica Phage Shock Protein Response
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Saori Yamaguchi , Andrew J. Darwin
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J. Microbiol. 2012;50(1):1-7. Published online February 27, 2012
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DOI: https://doi.org/10.1007/s12275-012-1578-7
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221
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22
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The phage shock protein (Psp) system is a conserved extracytoplasmic
stress response in bacteria that is essential
for virulence of the human pathogen Yersinia enterocolitica.
This article summarizes some recent findings about Y. enterocolitica
Psp system function. Increased psp gene expression
requires the transcription factor PspF, but under
non-inducing conditions PspF is inhibited by an interaction
with another protein, PspA, in the cytoplasm. A Psp-inducing
stimulus causes PspA to relocate to the cytoplasmic
membrane, freeing PspF to induce psp gene expression.
This PspA relocation requires the integral cytoplasmic
membrane proteins, PspB and PspC, which might sense an
inducing trigger and sequester PspA by direct interaction.
The subsequent induction of psp gene expression increases
the PspA concentration, which also allows it to contact the
membrane directly, perhaps for its physiological function.
Mutational analysis of the PspB and PspC proteins has revealed
that they both positively and negatively regulate psp
gene expression and has also identified PspC domains associated
with each function. We also compare the contrasting
physiological roles of the Psp system in the virulence of Y.
enterocolitica and Salmonella enterica sv. Typhimurium (S.
Typhimurium). In S. Typhimurium, PspA maintains the
proton motive force, which provides the energy needed to
drive ion importers required for survival within macrophages.
In contrast, in the extracellular pathogen Y. enterocolitica,
PspB and PspC, but not PspA, are the Psp components
needed for virulence. PspBC protect Y. enterocolitica from
damage caused by the secretin component of its type 3 secretion
system, an essential virulence factor.
Research Support, Non-U.S. Gov'ts
- Evaluation of Insecticidal Activity of a Bacterial Strain, Serratia sp. EML-SE1 against Diamondback Moth
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Hyung Uk Jeong , Hye Yeon Mun , Hyung Keun Oh , Seung Bum Kim , Kwang Yeol Yang , Iksoo Kim , Hyang Burm Lee
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J. Microbiol. 2010;48(4):541-545. Published online August 20, 2010
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DOI: https://doi.org/10.1007/s12275-010-0221-9
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194
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21
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Abstract
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To identify novel bioinsecticidal agents, a bacterial strain, Serratia sp. EML-SE1, was isolated from a dead larva of the lepidopteran diamondback moth (Plutella xylostella) collected from a cabbage field in Korea. In this study, the insecticidal activity of liquid cultures in Luria-Bertani broth (LBB) and nutrient broth (NB) of a bacterial strain, Serratia sp. EML-SE1 against thirty 3rd and 4th instar larvae of the diamondback moth was investigated on a Chinese cabbage leaf housed in a round plastic cage (Ø 10×6 cm). 72 h after spraying the cabbage leaf with LBB and NB cultures containing the bacterial strain, the mortalities of the larvae were determined to be 91.7% and 88.3%, respectively. In addition, the insecticidal activity on potted cabbage containing 14 leaves in a growth cage (165×83×124 cm) was found to be similar to that of the plastic cage experiment. The results of this study provided valuable information on the insecticidal activity of the liquid culture of a Serratia species against the diamondback moth.
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Citations
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- Pathogenicity of Serratia marcescens strains as biological control agent: Implications for sustainable pest management
Muhammad Rehan Akhtar, Muhammad Younas, Xiaofeng Xia
Insect Science.2025;[Epub] CrossRef - Comparison of Gold Extraction from Silicate Ores using Two-Step Bioleaching and Spent Medium of Co-Culture/Mixing Cell-Free Suspensions of Amino Acid-Producing Bacteria
Natrawee Khetwunchai, Saengchai Akeprathumchai, Paitip Thiravetyan
Journal of Sustainable Metallurgy.2025; 11(2): 1319. CrossRef - Microbial Community Structure and Metabolic Function in the Venom Glands of the Predatory Stink Bug, Picromerus lewisi (Hemiptera: Pentatomidae)
Jinmeng Li, Xu Tian, Tom Hsiang, Yuting Yang, Caihua Shi, Hancheng Wang, Wenhong Li
Insects.2024; 15(9): 727. CrossRef - Bacterial biopesticides: Biodiversity, role in pest management and beneficial impact on agricultural and environmental sustainability
Preety Tomar, Neelam Thakur, Samiksha Jhamta, Sohini Chowdhury, Monit Kapoor, Sangram Singh, Sheikh Shreaz, Sarvesh Rustagi, Pankaj Kumar Rai, Ashutosh Kumar Rai, Ajar Nath Yadav
Heliyon.2024; 10(11): e31550. CrossRef - Isolation, identification and pathogenicity of local entomopathogenic bacteria as biological control agents against the wild cochineal Dactylopius opuntiae (Cockerell) on cactus pear in Morocco
Karim El Fakhouri, Chaimae Ramdani, Abderrahim Aasfar, Rachid Boulamtat, Badreddine Sijilmassi, Mustapha El Bouhssini, Issam Meftah Kadmiri
Scientific Reports.2023;[Epub] CrossRef - Diversity of Gut Microbes in Adult Vespa velutina (Asian Hornet) Carcasses Killed by Natural Causes
Meiling Pang, Ji Luo, Zhende Yang, Xuejian Jiang
Diversity.2023; 15(12): 1162. CrossRef - Isolation and characterization of gut bacteria associated with the degradation of host-specific terpenoids in Pagiophloeus tsushimanus (Coleoptera: Curculionidae) larvae
Heng Qiao, Han Zhu, Hui Li, Hongjian Chen, Shouyin Li, Cong Chen, Dejun Hao, Xiao-Qiang Yu
Journal of Insect Science.2023;[Epub] CrossRef - Biological control of arthropod pests in protected cropping by employing entomopathogens: Efficiency, production and safety
Fanny Smagghe, Robert Spooner-Hart, Zhong-Hua Chen, Michelle Donovan-Mak
Biological Control.2023; 186: 105337. CrossRef - Comparison of the Antagonistic Potential of the Entomopathogenic Bacterium Serratia nematodiphila GCSR38 with other Effective Microorganisms for the Control of Rice Bacterial Leaf Blight
Waraporn Sutthisa
Journal of Pure and Applied Microbiology.2022; 16(1): 557. CrossRef - Histometric and morphological damage caused by Serratia marcescens to the tick Rhipicephalus microplus (Acari: Ixodidae)
Edgar Castro-Saines, Guadalupe Peña-Chora, Claudia Hallal-Calleros, Rodolfo Lagunes-Quintanilla, Ivan Flores-Perez, Ruben Hernandez-Ortiz
Archives of Microbiology.2022;[Epub] CrossRef - Characterization of a strain of Serratia sp. with ixodicide activity against the cattle tick Rhipicephalus microplus
Edgar Castro-Saines, Ruben Hernandez-Ortiz, Rodolfo Lagunes-Quintanilla, Guadalupe Peña-Chora
Experimental and Applied Acarology.2021; 85(1): 101. CrossRef - Evaluation of The Pathogenic Potential of Insecticidal Serratia marcescens Strains to Humans
EDYTA KONECKA, JOANNA MOKRACKA, SYLWIA KRZYMIŃSKA, ADAM KAZNOWSKI
Polish Journal of Microbiology.2019; 68(2): 185. CrossRef - Culturable symbionts associated with the reproductive and digestive tissues of the Neotropical brown stinkbug Euschistus heros
Wanessa Scopel, Fernando Luis Cônsoli
Antonie van Leeuwenhoek.2018; 111(12): 2413. CrossRef - Recent trends of modern bacterial insecticides for pest control practice in integrated crop management system
Pritam Chattopadhyay, Goutam Banerjee, Sayantan Mukherjee
3 Biotech.2017;[Epub] CrossRef - Bacteria abundance and diversity of different life stages of Plutella xylostella (Lepidoptera: Plutellidae), revealed by bacteria culture‐dependent and PCR‐DGGE methods
Xiao‐Li Lin, Qin‐Jian Pan, Hong‐Gang Tian, Angela E. Douglas, Tong‐Xian Liu
Insect Science.2015; 22(3): 375. CrossRef - Nematicidal activity of microbial pigment fromSerratia marcescens
Suryawanshi Rahul, Patil Chandrashekhar, Borase Hemant, Narkhede Chandrakant, Shinde Laxmikant, Patil Satish
Natural Product Research.2014; 28(17): 1399. CrossRef - Common Virulence Factors and Tissue Targets of Entomopathogenic Bacteria for Biological Control of Lepidopteran Pests
Anaïs Castagnola, S. Stock
Insects.2014; 5(1): 139. CrossRef - Effect of wax degrading bacteria on life cycle of the pink hibiscus mealybug, Maconellicoccus hirsutus (Green) (Hemiptera: Pseudococcidae)
Rahul B. Salunkhe, Chandrashekhar D. Patil, Bipinchandra K. Salunke, Ninfa M. Rosas-García, Satish V. Patil
BioControl.2013; 58(4): 535. CrossRef - Insecticidal potency of bacterial species Bacillus thuringiensis SV2 and Serratia nematodiphila SV6 against larvae of mosquito species Aedes aegypti, Anopheles stephensi, and Culex quinquefasciatus
Chandrashekhar D. Patil, Satish V. Patil, Bipinchandra K. Salunke, Rahul B. Salunkhe
Parasitology Research.2012; 110(5): 1841. CrossRef - Prodigiosin produced by Serratia marcescens NMCC46 as a mosquito larvicidal agent against Aedes aegypti and Anopheles stephensi
Chandrashekhar D. Patil, Satish V. Patil, Bipinchandra K. Salunke, Rahul B. Salunkhe
Parasitology Research.2011; 109(4): 1179. CrossRef - Entomopathogenicity of endophytic Serratia marcescens strain SRM against larvae of Helicoverpa armigera (Noctuidae: Lepidoptera)
Muthugounder Mohan, Govindan Selvakumar, Satya Nand Sushil, Jagdish Chandra Bhatt, Hari Shankar Gupta
World Journal of Microbiology and Biotechnology.2011; 27(11): 2545. CrossRef
- Effect of Acidic pH on the Invasion Efficiency and the Type III Secretion System of Burkholderia thailandensis
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Siroj Jitprasutwit , Wisansanee Thaewpia , Veerachat Muangsombut , Aroonlug Lulitanond , Chanvit Leelayuwat , Ganjana Lertmemongkolchai , Sunee Korbsrisate
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J. Microbiol. 2010;48(4):526-532. Published online August 20, 2010
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DOI: https://doi.org/10.1007/s12275-010-0078-x
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203
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9
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Burkholderia thailandensis is a close relative of Burkholderia pseudomallei. These organisms are very similar, but B. thailandensis is far less virulent than B. pseudomallei. Nucleotide sequencing and analysis of 14 B. thailandensis isolates revealed variation in the regions coding for the type III secreted BipD protein. The degree of B. thailandensis BipD sequence variation was greater than that found in B. pseudomallei. Western blot analysis indicated that, unlike B. pseudomallei, B. thailandensis type III secreted proteins including BipD and BopE could not be detected in the supernatant of culture medium unless induced by acidic conditions. In addition, culturing B. thailandensis under acidic growth conditions (pH 4.5) can induce the ability of this bacterium to invade human respiratory epithelial cells A549. The identification of an environmental stimulus that increases the invasion capability of B. thailandensis invasion is of value for those who would like to use this bacterium as a model to study B. pseudomallei virulence.
- NOTE] Biosynthesis of Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) Copolyesters with a High Molar Fraction of 3-Hydroxyvalerate by an Insect-Symbiotic Burkholderia sp. IS-01
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Do Young Kim , Doo-Sang Park , Soon Bum Kwon , Moon Gyu Chung , Kyung Sook Bae , Ho-Yong Park , Young Ha Rhee
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J. Microbiol. 2009;47(5):651-656. Published online October 24, 2009
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DOI: https://doi.org/10.1007/s12275-009-0109-7
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190
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18
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Burkholderia sp. IS-01 capable of biosynthesizing poly(3-hydroxybutyrate-co-3-hydroxyvalerate) [poly(3HB- co-3HV)] copolyesters with a high molar fraction of 3HV was isolated from the gut of the adult longicorn beetle, Moechotypa diphysis. The strain IS-01 was relatively tolerant to high concentrations of levulinic acid and accumulated a poly(13.5 mol% 3HB-co-86.5 mol% 3HV) copolyester when cultivated on a mixture of gluconate (20 g/L) and levulinic acid (12.5 g/L). In this case, the content of the copolyester in the cells was approximately 60.0%. The compositions of the copolyesters were easily regulated by altering the molar ratio of gluconate and levulinic acid in the medium. The organism was found to possess a class I PHA synthase (PhaC) gene (1,881 bp) that encodes a protein with a deduced molecular mass of 68,538 Da that consists of 626 amino acids. The PhaC of this organism was most similar to that of B. cenocepacia PC184 (92% similarity).
- Gene Expression Analysis of Phanerochaete chrysosporium During the Transition Time from Primary Growth to Secondary Metabolism
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Mingfeng Jiang , Xiao Li , Liang Zhang , Hong Feng , Yizheng Zhang
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J. Microbiol. 2009;47(3):308-318. Published online June 26, 2009
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DOI: https://doi.org/10.1007/s12275-008-0275-z
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300
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8
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In order to identify the secondary metabolism-related genes of Phanerochaete chrysosporium growing under pure O2 and nitrogen-limited conditions, 2322 ESTs fragments originated from two suppression-subtractive libraries were analyzed using the cDNA microarray technique. Ten significantly upregulated and 22 significantly downregulated genes were identified in the 72 h cultured mycelia RNA samples (secondary metabolism). According to qPCR, 16 out of the 32 genes were expressed differently in secondary metabolism. Transcripts of secondary metabolism up-regulation genes exhibited homologies to aryl-alcohol dehydrogenase (SSh1554), ABC transporter gene (SSH624), chitinase (SSH963), heat shock protein (SSH1193), catalase (SSH317), cytochrome P450 (SSH331), glucosamine-6-phosphate isomerase (SSH611), and alkyl hydroperoxide reductase (SSH362) genes. Ninety-three genes could be classified by Eukaryotic Orthologous Groups (KOG). Among the genes assigned a function, gene expression patterns were different in both secondary metabolism and primary metabolism. In the group of “Cellular Processes and Signaling,” most of the genes were from the primary metabolism library. On the other hand, genes from the secondary metabolism library were found mainly in the “Information Storage” and “Processing and Poorly Characterized” groups. Based on the KOG functional assignments, six genes belong to the ubiquitin system, and all of them were from primary metabolism phase. The presence of the H2O2-relevant genes suggested that parts of the genes expressed in 72 h might be involved in the ligninolytic process during secondary metabolism of P. chrysosporium.
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- Basidiomycota Fungi and ROS: Genomic Perspective on Key Enzymes Involved in Generation and Mitigation of Reactive Oxygen Species
Hans Mattila, Janina Österman-Udd, Tuulia Mali, Taina Lundell
Frontiers in Fungal Biology.2022;[Epub] CrossRef - Gene expression metadata analysis reveals molecular mechanisms employed by Phanerochaete chrysosporium during lignin degradation and detoxification of plant extractives
Ayyappa Kumar Sista Kameshwar, Wensheng Qin
Current Genetics.2017; 63(5): 877. CrossRef - Studies on the Molecular Docking and Amino Acid Residues Involving in Recognition of Substrate in Proline Iminopeptidase by Site-Directed Mutagenesis
Zhixin Jing, Hong Feng
The Protein Journal.2015; 34(3): 173. CrossRef - Transcriptome characteristics of filamentous fungi deduced using high-throughput analytical technologies
M. L. Meijueiro, F. Santoyo, L. Ramirez, A. G. Pisabarro
Briefings in Functional Genomics.2014; 13(6): 440. CrossRef - An oligopeptide transporter gene family in Phanerochaete chrysosporium
Quanju Xiang, Zhongshan Wang, Yizheng Zhang, Haiyan Wang
Gene.2013; 522(2): 133. CrossRef - Comparative Transcriptome and Secretome Analysis of Wood Decay FungiPostia placentaandPhanerochaete chrysosporium
Amber Vanden Wymelenberg, Jill Gaskell, Michael Mozuch, Grzegorz Sabat, John Ralph, Oleksandr Skyba, Shawn D. Mansfield, Robert A. Blanchette, Diego Martinez, Igor Grigoriev, Philip J. Kersten, Dan Cullen
Applied and Environmental Microbiology.2010; 76(11): 3599. CrossRef - Gene Expression in Secondary Metabolism and Metabolic Switching Phase of Phanerochaete chrysosporium
Jin-Ming Wu, Yi-zheng Zhang
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- Stable Expression and Secretion of Polyhydroxybutyrate Depolymerase of Paucimonas lemoignei in Escherichia coli
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Se Whan Park , Moon Gyu Chung , Hwa Young Lee , Jeong Yoon Kim , Young Ha Rhee
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J. Microbiol. 2008;46(6):662-669. Published online December 24, 2008
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DOI: https://doi.org/10.1007/s12275-008-0283-z
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An efficient strategy for the expression and secretion of extracellular polyhydroxybutyrate depolymerase (PhaZ1) of Paucimonas lemoignei in Escherichia coli was developed by employing the signal peptide of PhaZ1 and a truncated ice nucleation protein anchoring motif (INPNC). Directly synthesized mature form of PhaZ1 was present in the cytoplasm of host cells as inclusion bodies, while a construct containing PhaZ1 and its own N-terminal signal peptide (PrePhaZ1) enabled the secretion of active PhaZ1 into the extracellular medium. However, the PrePhaZ1 construct was harmful to the host cell and resulted in atypical growth and instability of the plasmid during the cultivation. In contrast, INPNC-PhaZ1 and INPNCPrePhaZ1 fusion constructs did not affect growth of host cells. INPNC-PhaZ1 was successfully displayed on the cell surface with its fusion form, but did not retain PhaZ1 activity. In the case of INPNC-PrePhaZ1, the initially synthesized fusion form was separated by precise cleavage of the signal peptide, and active PhaZ1 was consequently released into the culture medium. The amount of PhaZ1 derived from E. coli (INPNC-PrePhaZ1) was almost twice as great as that directly expressed from E. coli (PrePhaZ1), and was predominantly (approximately 85%) located in the periplasm when cultivated at 22°C but was efficiently secreted into the extracellular medium when cultivated at 37°C.
- Taxonomic Revision of the Nematode-Trapping Fungus Arthrobotrys multisecundaria
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Juan Li , Jinkui Yang , Lianming Liang , Ke-Qin Zhang
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J. Microbiol. 2008;46(5):513-518. Published online October 31, 2008
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DOI: https://doi.org/10.1007/s12275-007-0115-6
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225
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The gene encoding an extracellular serine protease was cloned from Arthrobotrys multisecundaria using degenerate primers. The gene was highly similar (99.26%) to protease Mlx from Monacrosporium microscaphoides. To clarify the taxonomic relationship between these species, genes encoding the internal transcribed spacer (ITS) and β-tubulin were also cloned and sequenced from A. multisecundaria and M. microscaphoides, respectively. Homologous analysis of the nuclear (ITS) and protein (β-tubulin) encoding genes showed that the two species of nematode-trapping fungi also shared extensive identity (99.82 and 99.63%, respectively), although they exhibited obvious differences in secondary conidia morphology. Accordingly, a taxonomic revision is recommended, with A. multisecundaria being revised as A. microscaphoides var. multisecundaria. In addition, the identified mutation may better facilitate the study of the sporulation of nematode-trapping fungi.
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Felix B. Rosumek, Nico Blüthgen, Adrian Brückner, Florian Menzel, Gerhard Gebauer, Michael Heethoff
PeerJ.2018; 6: e5467. CrossRef - Relationship between environmental conditions,TRI5 gene expression and deoxynivalenol production in storedLentinula edodes infected withFusarium graminearum
Z. Han, Y. Shen, J. Diana Di Mavungu, D. Zhang, D. Nie, K. Jiang, S. De Saeger, Z. Zhao
World Mycotoxin Journal.2018; 11(2): 177. CrossRef - Notes for genera: Ascomycota
Nalin N. Wijayawardene, Kevin D. Hyde, Kunhiraman C. Rajeshkumar, David L. Hawksworth, Hugo Madrid, Paul M. Kirk, Uwe Braun, Rajshree V. Singh, Pedro W. Crous, Martin Kukwa, Robert Lücking, Cletus P. Kurtzman, Andrey Yurkov, Danny Haelewaters, André Aptro
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- Two Forms of Vibrio vulnificus Metalloprotease VvpE are Secreted via the Type II General Secretion System
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Jong Park , So-Yeon Ryu , Choon-Mee Kim , Sung-Heui Shin
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J. Microbiol. 2008;46(3):338-343. Published online July 5, 2008
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DOI: https://doi.org/10.1007/s12275-008-0058-6
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248
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Vibrio vulnificus has been known to secrete one form of metalloprotease VvpE (45 kDa) that is cleaved to 34 kDa-VvpE and 11 kDa-C-terminal propeptide via extracellular autoproteolysis. However, we found that extracellular secretion of both the 34 and 45 kDa forms of VvpE began in the early growth phase; moreover, 34 kDa-VvpE existed as the major form in V. vulnificus cell lysates and culture supernatants. In addition, extracellular secretion of both 34 and 45 kDa-VvpE was blocked by mutation of the pilD gene, which encodes for the type IV leader peptidase/N-methyltransferase of the type II general secretion system, and the blocked VvpE secretion was recovered by in trans-complementation of the wild-type pilD gene. These results indicate that 34 kDa-VvpE is the major form secreted along with 45 kDa-VvpE from the early growth phase via the PilD-mediated type II general secretion system.
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Citations
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- Structure and assembly of pilotin-dependent and -independent secretins of the type II secretion system
S. Peter Howard, Leandro F. Estrozi, Quentin Bertrand, Carlos Contreras-Martel, Timothy Strozen, Viviana Job, Alexandre Martins, Daphna Fenel, Guy Schoehn, Andréa Dessen, Tomoko Kubori
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Annals of Microbiology.2013; 63(1): 403. CrossRef - SmcR, the Quorum-sensing Master Regulator, Is Partially Involved in Temperature/Salinity-mediated Changes in MetalloproteasevvpEExpression inVibrio vulnificus
Choon-Mee Kim, Sung-Heui Shin
Journal of Bacteriology and Virology.2012; 42(1): 29. CrossRef - Change ofVibrio vulnificusMetalloprotease VvpE Production by Temperature and Salinity
Choon-Mee Kim, Sung-Heui Shin
Journal of Bacteriology and Virology.2011; 41(3): 147. CrossRef - Functional Characterization of EpsC, a Component of the Type II Secretion System, in the Pathogenicity of Vibrio vulnificus
Won Hwang, Na Yeon Lee, Juri Kim, Mi-Ae Lee, Kun-Soo Kim, Kyu-Ho Lee, Soon-Jung Park, S. R. Blanke
Infection and Immunity.2011; 79(10): 4068. CrossRef - Genomic and proteomic analyses of the coral pathogen Vibrio coralliilyticus reveal a diverse virulence repertoire
Eidy de O Santos, Nelson Alves, Graciela M Dias, Ana Maria Mazotto, Alane Vermelho, Gary J Vora, Bryan Wilson, Victor H Beltran, David G Bourne, Frédérique Le Roux, Fabiano L Thompson
The ISME Journal.2011; 5(9): 1471. CrossRef - Proteases Produced by Vibrios
SUMIO SHINODA, SHIN-ICHI MIYOSHI
Biocontrol Science.2011; 16(1): 1. CrossRef - A recombinant metalloprotease antigen ofVibrio vulnificuselicits protective antibodies in a murine model
Y.-C. Chen, C.-C. Chang, S.-Y. Chang, J.-H. Su
Letters in Applied Microbiology.2010; 50(2): 168. CrossRef - Current status and future prospects in a pathogenic study of Vibrio vulnificus
Takashige KASHIMOTO
Nippon Saikingaku Zasshi.2010; 65(3): 369. CrossRef
- Characterization of an Extracellular Lipase in Burkholderia sp. HY-10 Isolated from a Longicorn Beetle
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Doo-Sang Park , Hyun-Woo Oh , Sun-Yeon Heo , Woo-Jin Jeong , Dong Ha Shin , Kyung Sook Bae , Ho-Young Park
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J. Microbiol. 2007;45(5):409-417.
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DOI: https://doi.org/2596 [pii]
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Abstract
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Burkholderia sp. HY-10 isolated from the digestive tracts of the longicorn beetle, Prionus insularis, produced an extracellular lipase with a molecular weight of 33.5 kDa estimated by SDS-PAGE. The lipase was purified from the culture supernatant to near electrophoretic homogenity by a one-step adsorption-desorption procedure using a polypropylene matrix followed by a concentration step. The purified lipase exhibited highest activities at pH 8.5 and 60°C. A broad range of lipase substrates, from C4 to C18 ρ-nitrophenyl esters, were hydrolyzed efficiently by the lipase. The most efficient substrate was ρ-nitrophenyl caproate (C6). A 2485 bp DNA fragment was isolated by PCR amplification and chromosomal walking which encoded two polypeptides of 364 and 346 amino acids, identified as a lipase and a lipase foldase, respectively. The N-terminal amino acid sequence of the purified lipase and nucleotide sequence analysis predicted that the precursor lipase was proteolytically modified through the secretion step and produced a catalytically active 33.5 kDa protein. The deduced amino acid sequence for the lipase shared extensive similarity with those of the lipase family I.2 of lipases from other bacteria. The deduced amino acid sequence contained two Cystein residues forming a disulfide bond in the molecule and three, well-conserved amino acid residues, Ser131, His330, and Asp308, which composed the catalytic triad of the enzyme.