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Journal Article
- Gut Microbiota Dysbiosis Facilitates Susceptibility to Bloodstream Infection
- Xiaomin Lin, Chun Lin, Xin Li, Fen Yao, Xiaoling Guo, Meimei Wang, Mi Zeng, Yumeng Yuan, Qingdong Xie, Xudong Huang, Xiaoyang Jiao
- J. Microbiol. 2024;62(12):1113-1124. Published online December 2, 2024
- DOI: https://doi.org/10.1007/s12275-024-00190-5
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Abstract
- To study the role of intestinal flora in the development of bloodstream infections (BSIs). 42 patients and 19 healthy controls (HCs) were screened into the study and their intestinal flora was measured by 16S rRNA gene sequencing. The bacterial diversity was significantly lower in the BSI group compared with that in the HCs (P < 0.001), and beta diversity was significantly differentiated between the two groups (PERMANOVA, P = 0.001). The four keystone species [Roseburia, Faecalibacterium, Prevotella, and Enterococcus (LDA > 4)] differed significantly between the two groups. Dysbiosis of fecal microbial ecology is a common condition present in patients with BSI. The proliferation of certain pathogens or reduction of SCFA-producing bacteria would cause susceptibility to BSI.
Review
- The Role of Extracellular Vesicles in Pandemic Viral Infections
- Woosung Shim, Anjae Lee, Jung-Hyun Lee
- J. Microbiol. 2024;62(6):419-427. Published online June 25, 2024
- DOI: https://doi.org/10.1007/s12275-024-00144-x
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- 2 Web of Science
- 1 Crossref
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Abstract
- Extracellular vesicles (EVs), of diverse origin and content, are membranous structures secreted by a broad range of cell types. Recent advances in molecular biology have highlighted the pivotal role of EVs in mediating intercellular communication, facilitated by their ability to transport a diverse range of biomolecules, including proteins, lipids, DNA, RNA and metabolites. A striking feature of EVs is their ability to exert dual effects during viral infections, involving both proviral and antiviral effects. This review explores the dual roles of EVs, particularly in the context of pandemic viruses such as HIV-1 and SARS-CoV-2. On the one hand, EVs can enhance viral replication and exacerbate pathogenesis by transferring viral components to susceptible cells. On the other hand, they have intrinsic antiviral properties, including activation of immune responses and direct inhibition of viral infection. By exploring these contrasting functions, our review emphasizes the complexity of EV-mediated interactions in viral pathogenesis and highlights their potential as targets for therapeutic intervention. The insights obtained from investigating EVs in the context of HIV-1 and SARS-CoV-2 provide a deeper understanding of viral mechanisms and pathologies, and offer a new perspective on managing and mitigating the impact of these global health challenges.
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Citations
Citations to this article as recorded by
- Differential Impact of Spike Protein Mutations on SARS-CoV-2 Infectivity and Immune Evasion: Insights from Delta and Kappa Variants
Tae-Hun Kim, Sojung Bae, Jinjong Myoung
Journal of Microbiology and Biotechnology.2024; 34(12): 2506. CrossRef
- Differential Impact of Spike Protein Mutations on SARS-CoV-2 Infectivity and Immune Evasion: Insights from Delta and Kappa Variants
Journal Articles
- The β‑Lactamase Activity at the Community Level Confers β‑Lactam Resistance to Bloom‑Forming Microcystis aeruginosa Ce
- Yerim Park , Wonjae Kim , Minkyung Kim , Woojun Park
- J. Microbiol. 2023;61(9):807-820. Published online October 18, 2023
- DOI: https://doi.org/10.1007/s12275-023-00082-0
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- 7 Web of Science
- 7 Crossref
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Abstract
- Many freshwater cyanobacteria, including Microcystis aeruginosa, lack several known antibiotic resistance genes; however, both axenic and xenic M. aeruginosa strains exhibited high antibiotic resistance against many antibiotics under our tested concentrations, including colistin, trimethoprim, and kanamycin. Interestingly, axenic PCC7806, although not the xenic NIBR18 and NIBR452 strains, displayed susceptibility to ampicillin and amoxicillin, indicating that the associated bacteria in the phycosphere could confer such antibiotic resistance to xenic strains. Fluorescence and scanning electron microscopic observations revealed their tight association, leading to possible community-level β-lactamase activity. Combinatory treatment of ampicillin with a β-lactamase inhibitor, sulbactam, abolished the ampicillin resistance in the xenic stains. The nitrocefin-based assay confirmed the presence of significant community-level β-lactamase activity. Our tested low ampicillin concentration and high β-lactamase activity could potentially balance the competitive advantage of these dominant species and provide opportunities for the less competitive species, thereby resulting in higher bacterial diversity under ampicillin treatment conditions. Non-PCR-based metagenome data from xenic NIBR18 cultures revealed the dominance of blaOXArelated antibiotic resistance genes followed by other class A β-lactamase genes (AST-1 and FAR-1). Alleviation of ampicillin toxicity could be observed only in axenic PCC7806, which had been cocultured with β-lactamase from other freshwater bacteria. Our study suggested M. aeruginosa develops resistance to old-class β-lactam antibiotics through altruism, where associated bacteria protect axenic M. aeruginosa cells.
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Citations
Citations to this article as recorded by- Sustainable control of Microcystis aeruginosa, a harmful cyanobacterium, using Selaginella tamariscina extracts
Wonjae Kim, Yerim Park, Minkyung Kim, Yeji Cha, Jaejoon Jung, Che Ok Jeon, Woojun Park
Ecotoxicology and Environmental Safety.2024; 277: 116375. CrossRef - Microcystis abundance is predictable through ambient bacterial communities: A data-oriented approach
Mingyeong Kang, Dong-Kyun Kim, Ve Van Le, So-Ra Ko, Jay Jung Lee, In-Chan Choi, Yuna Shin, Kyunghyun Kim, Chi-Yong Ahn
Journal of Environmental Management.2024; 368: 122128. CrossRef - Enhanced mechanical properties of living and regenerative building materials by filamentous Leptolyngbya boryana
Yongjun Son, Jihyeon Min, Indong Jang, Jiyoon Park, Chongku Yi, Woojun Park
Cell Reports Physical Science.2024; 5(8): 102098. CrossRef - Food Webs and Feedbacks: The Untold Ecological Relevance of Antimicrobial Resistance as Seen in Harmful Algal Blooms
Aabir Banerji, Nichole E. Brinkman, Benjamin Davis, Alison Franklin, Michael Jahne, Scott P. Keely
Microorganisms.2024; 12(11): 2121. CrossRef - Extensive Genomic Rearrangement of Catalase-Less Cyanobloom-Forming Microcystis aeruginosa in Freshwater Ecosystems
Minkyung Kim, Jaejoon Jung, Wonjae Kim, Yerim Park, Che Ok Jeon, Woojun Park
Journal of Microbiology.2024; 62(11): 933. CrossRef - Biological and Chemical Approaches for Controlling Harmful Microcystis Blooms
Wonjae Kim, Yerim Park, Jaejoon Jung, Che Ok Jeon, Masanori Toyofuku, Jiyoung Lee, Woojun Park
Journal of Microbiology.2024; 62(3): 249. CrossRef - Alleviation of H2O2 toxicity by extracellular catalases in the phycosphere of Microcystis aeruginosa
Yerim Park, Wonjae Kim, Yeji Cha, Minkyung Kim, Woojun Park
Harmful Algae.2024; 137: 102680. CrossRef
- Sustainable control of Microcystis aeruginosa, a harmful cyanobacterium, using Selaginella tamariscina extracts
- Chryseobacterium paludis sp. nov. and Chryseobacterium foetidum sp. nov. Isolated from the Aquatic Environment, South Korea
- Miryung Kim , Yong&# , Chang&#
- J. Microbiol. 2023;61(1):37-47. Published online February 1, 2023
- DOI: https://doi.org/10.1007/s12275-022-00008-2
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- 3 Crossref
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Abstract
- Two novel bacterial species CJ51T and CJ63T belonging to the genus Chryseobacterium were isolated from the Upo wetland and the Han River, South Korea, respectively. Cells of these strains were Gram-stain-negative, aerobic, non-motile, rodshaped, and catalase- and oxidase-positive. Both strains were shown to grow optimally at 30 °C and pH 7 in the absence of NaCl on tryptic soy agar. Phylogenetic analysis based on 16S rRNA gene sequences showed that strains CJ51T and CJ63T belonged to the genus Chryseobacterium and were most closely related to Chryseobacterium piperi CTMT and Chryseobacterium piscicola VQ-6316sT with 98.47% and 98.46% 16S rRNA sequence similarities, respectively. The average nucleotide identity values of strains CJ51T and CJ63T with its closely related type strains Chryseobacterium piperi CTMT and Chryseobacterium piscicola VQ-6316sT were 81.9% and 82.1%, respectively. The major fatty acids of strains CJ51T and CJ63T were iso-C15:0, iso-C17:0 3-OH and summed feature 9 ( C16:0 10-methyl and/or iso-C17:1ω9c). Menaquinone 6 (MK-6) was identified as the primary respiratory quinone in both strains. The major polar lipids of strains CJ51T and CJ63T were phosphatidylethanolamine and several unidentified amino lipids and lipids. Based on polyphasic taxonomy data, strains CJ51T and CJ63T represent novel species of the genus Chryseobacterium, for which names Chryseobacterium paludis sp. nov. and Chryseobacterium foetidum sp. nov. are proposed respectively. The type strains are CJ51T (= KACC 22749T = JCM 35632T) and CJ63T (= KACC 22750T = JCM 35633T).
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Citations
Citations to this article as recorded by-
Pilin regions that select for the small RNA phages in
Pseudomonas aeruginosa
type IV pilus
Hee-Won Bae, Hyeong-Jun Ki, Shin-Yae Choi, You-Hee Cho, Kristin N. Parent
Journal of Virology.2025;[Epub] CrossRef - Genomic insights into multidrug and heavy metal resistance in Chryseobacterium sp. BI5 isolated from sewage sludge
Mrinmoy Patra, Anand Kumar Pandey, Suresh Kumar Dubey
Total Environment Microbiology.2025; 1(1): 100005. CrossRef - Validation List no. 212. Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef
-
Pilin regions that select for the small RNA phages in
Pseudomonas aeruginosa
type IV pilus
- Diversity and Dynamics of Marine Arenicolous Fungi in Three Seasides of the Korean Peninsula
- Jun Won Lee , Chang Wan Seo , Wonjun Lee , Ji Seon Kim , Ki Hyeong Park , Yoonhee Cho , Young Woon Lim
- J. Microbiol. 2023;61(1):63-82. Published online January 30, 2023
- DOI: https://doi.org/10.1007/s12275-023-00011-1
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- 4 Web of Science
- 3 Crossref
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Abstract
- Various arenicolous fungal species have been detected from the beach sand in the coastal area. However, little has been revealed regarding their distribution and dynamics. To investigate the overall diversity of marine arenicolous fungi (MAFs) in Korea and whether the composition of MAFs is affected by ocean currents, we isolated and analyzed the fungal community from the western, southern, and eastern seasides of the Korean Peninsula. In total, 603 strains were isolated and identified as 259 species based on appropriate molecular markers for each genus (ITS, BenA, CaM, tef1, and act). The composition of MAFs showed differences among the seasides. Our results indicate that many MAFs inhabit the beach sand on the Korean Peninsula, and the composition of MAFs is also affected by ocean currents flowing along each coast.
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Citations
Citations to this article as recorded by- The genus Peniophora (Russulales, Basidiomycota) from Patagonia revisited
Mario Rajchenberg, Andrés de Errasti, Sergio Pérez Gorjón
Mycological Progress.2024;[Epub] CrossRef - Contributions to the Inocybe umbratica–paludinella (Agaricales) Group in China: Taxonomy, Species Diversity, and Molecular Phylogeny
Xin Chen, Wen-Jie Yu, Tolgor Bau, P. Brandon Matheny, Egon Horak, Yu Liu, Li-Wu Qin, Li-Ping Tang, Yu-Peng Ge, Tie-Zhi Liu, Yu-Guang Fan
Journal of Fungi.2024; 10(12): 893. CrossRef -
Long-Term Investigation of Marine-Derived
Aspergillus
Diversity in the Republic of Korea
Jun Won Lee, Wonjun Lee, Rekhani Hansika Perera, Young Woon Lim
Mycobiology.2023; 51(6): 436. CrossRef
- The genus Peniophora (Russulales, Basidiomycota) from Patagonia revisited
- Flaviflexus equikiangi sp. nov. isolated from faeces of Equus kiang (Tibetan wild ass) and carrying a class 1 integron gene cassette in its genome
- Caixin Yang , Xingxing Lian , Yanpeng Cheng , Yifan Jiao , Jing Yang , Kui Dong , Shan Lu , Xin-He Lai , Dong Jin , Han Zheng , Ji Pu , Suping Wang , Liyun Liu , Jianguo Xu
- J. Microbiol. 2022;60(6):585-593. Published online April 18, 2022
- DOI: https://doi.org/10.1007/s12275-022-1673-3
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Abstract
- Two Gram-stain-positive, catalase-negative, non-spore-forming, cocci-shaped strains (dk850T and JY899) were isolated from the feces of Equus kiang in the Qinghai-Tibet Plateau of China. 16S rRNA gene sequence-based phylogenetic analyses showed that strains dk850T and JY899 belong to the genus Flaviflexus, closest to F. salsibiostraticola KCTC 33148T, F. ciconiae KCTC 49253T and F. huanghaiensis H5T. The DNA G + C content of strain dk850T was 62.9%. The digital DNADNA hybridization values of strain dk850T with the closely related species were below the 70% threshold for species demarcation. The two strains grew best at 28°C on brain heart infusion (BHI) agar with 5% sheep blood. All strains had C18:1ω9c and C16:0 as the major cellular fatty acids. MK-9(H4) was the major menaquinone in strain dk850T. The major polar lipids included diphosphatidylglycerol and an unidentified phospholipid. Strains dk850T and JY899 were identified as carrying a class 1 integron containing the aminoglycoside resistance gene aadA11, both strains were resistant to spectinomycin and streptomycin. Based on several lines of evidence from phenotypic and phylogenetic analyses, strains dk850T and JY899 represent a novel species of the genus Flaviflexus, for which the name Flaviflexus equikiangi sp. nov. is proposed. The type strain is dk850T (= CGMCC 1.16593T = JCM 33598T).
Randomized Controlled Trial
- A split face study on the effect of an anti-acne product containing fermentation products of Enterococcus faecalis CBT SL-5 on skin microbiome modification and acne improvement
- Hye Sung Han , Sun Hye Shin , Bo-Yun Choi , Nayeon Koo , Sanghyun Lim , Dooheon Son , Myung Jun Chung , Kui Young Park , Woo Jun Sul
- J. Microbiol. 2022;60(5):488-495. Published online March 14, 2022
- DOI: https://doi.org/10.1007/s12275-022-1520-6
- 57 View
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- 10 Web of Science
- 5 Crossref
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Abstract
- Antibiotic-resistant Cutibacterium acnes and dysbiosis of the skin microbiome are of increasing concern in acne treatment. Enterococcus faecalis, a widely used probiotic, has shown benefits for acne treatment by exerting antimicrobial activity against C. acnes. Therefore, this study aimed to investigate the efficacy and safety of an E. faecalis CBT SL-5-extract-containing lotion in patients with mild-to-moderate acne. Twenty patients were enrolled in this randomized, placebo-controlled, split-face comparative study. Patients were treated with E. faecalis lotion on one side of the face and a vehicle lotion on the other side for 4 weeks. The efficacy outcome measures included improvement in the investigators’ assessment of acne severity, patient satisfaction, changes in skin parameters and diversity of the skin microbiome. The investigators’ assessment score was significantly improved on the test side compared to the control side, after 2 weeks (p = 0.009) and 6 weeks (p < 0.0005). However, TEWL and skin hydration were not significantly different between the two groups. The phylogenetic diversity of the skin microbiota decreased over time in the skin samples of test side. In conclusion, E. faecalis CBT SL-5 extract can be a feasible and well-tolerated option for improving acne severity and skin microbiome dysbiosis in mild-to-moderate acne patients.
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Citations
Citations to this article as recorded by- Efficacy of a Postbiotic Formulation Combined With Microneedling for Mild‐to‐Moderate Acne: A Self‐Control Study
Zhanhong Li, Peihui Li, Yu Xu, Changqing Yan, Xiufen Ma, Huiying Wang, Hong Cheng, Jing Zeng, Ting Li, Xinxian Li, Jia Zhou, Jie Zhang, Jianfeng Zhou, Rongya Yang, Yan Wu, Li Li, Wei Lai, Jiangyun Zhao, Zhe Liu, Qiong Meng
Journal of Cosmetic Dermatology.2024;[Epub] CrossRef - Using probiotics to treat acne vulgaris: systematic review
Aleena Boby, Grace Lee, Nicole Natarelli, Lilia Correa
Archives of Dermatological Research.2024;[Epub] CrossRef - Skin Deep: The Potential of Microbiome Cosmetics
Ju Hee Han, Hei Sung Kim
Journal of Microbiology.2024; 62(3): 181. CrossRef - The updates and implications of cutaneous microbiota in acne
Cong Huang, Fan Zhuo, Baoquan Han, Wenting Li, Bin Jiang, Kaoyuan Zhang, Xingling Jian, Zhenzhen Chen, Hui Li, Haiyan Huang, Xia Dou, Bo Yu
Cell & Bioscience.2023;[Epub] CrossRef - Cutibacterium acnes Dysbiosis: Alternative Therapeutics for Clinical Application
Sara Sá, Ruben Fernandes, Álvaro Gestoso, José Mário Macedo, Daniela Martins-Mendes, Ana Cláudia Pereira, Pilar Baylina
Applied Sciences.2023; 13(21): 12086. CrossRef
- Efficacy of a Postbiotic Formulation Combined With Microneedling for Mild‐to‐Moderate Acne: A Self‐Control Study
Journal Article
- Alterations of oral microbiota in Chinese children with viral encephalitis and/or viral meningitis
- Yijie Li , Jing Liu , Yimin Zhu , Chunying Peng , Yao Dong , Lili Liu , Yining He , Guoping Lu , Yingjie Zheng
- J. Microbiol. 2022;60(4):429-437. Published online February 14, 2022
- DOI: https://doi.org/10.1007/s12275-022-1560-y
- 55 View
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- 2 Web of Science
- 2 Crossref
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Abstract
- The role of oral microbiota in viral encephalitis and/or viral meningitis (VEVM) remains unclear. In this hospital-based, frequency-matched study, children with clinically diagnosed VEVM (n = 68) and those with other diseases (controls, n = 68) were recruited. Their oral swab samples were collected and the oral microbiota was profiled using 16S rRNA gene sequencing. The oral microbiota of children with VEVM exhibited different beta diversity metrics (unweighted UniFrac distance: P < 0.001, R2 = 0.025, Bray-curtis dissimilarity: P = 0.045, R2 = 0.011, and Jaccard dissimilarity: P < 0.001, R2 = 0.017) and higher relative abundances of taxa identified by Linear discriminant analysis (LDA) with effect size (Enterococcus, Pedobacter, Massilia, Prevotella_9, Psychrobacter, Butyricimonas, Bradyrhizobium, etc., LDA scores > 2.0) when compared with the control group. The higher pathway abundance of steroid hormone biosynthesis predicted by oral microbiota was suggested to be linked to VEVM (q = 0.020). Further, a model based on oral microbial traits showed good predictive performance for VEVM with an area under the receiver operating characteristic curve of 0.920 (95% confidence interval: 0.834–1.000). Similar results were also obtained between children with etiologically diagnosed VEVM (n = 43) and controls (n = 68). Our preliminary study identified VEVM-specific oral microbial traits among children, which can be effective in the diagnosis of VEVM.
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Citations
Citations to this article as recorded by- Metagenomic next-generation sequencing and proteomics analysis in pediatric viral encephalitis and meningitis
Yi-Long Wang, Xiao-Tong Guo, Meng-Ying Zhu, Yu-Chen Mao, Xue-Bin Xu, Yi Hua, Lu Xu, Li-Hua Jiang, Cong-Ying Zhao, Xin Zhang, Guo-Xia Sheng, Pei-Fang Jiang, Zhe-Feng Yuan, Feng Gao
Frontiers in Cellular and Infection Microbiology.2023;[Epub] CrossRef - Bacterial Biomarkers of the Oropharyngeal and Oral Cavity during SARS-CoV-2 Infection
William Bourumeau, Karine Tremblay, Guillaume Jourdan, Catherine Girard, Catherine Laprise
Microorganisms.2023; 11(11): 2703. CrossRef
- Metagenomic next-generation sequencing and proteomics analysis in pediatric viral encephalitis and meningitis
Randomized Controlled Trial
- Ulmus macrocarpa Hance extract modulates intestinal microbiota in healthy adults: a randomized, placebo-controlled clinical trial
- Kwangmin Kim , Karpagam Veerappan , Nahyun Woo , Bohyeon Park , Sathishkumar Natarajan , Hoyong Chung , Cheolmin Kim , Junhyung Park
- J. Microbiol. 2021;59(12):1150-1156. Published online October 26, 2021
- DOI: https://doi.org/10.1007/s12275-021-1329-8
- 50 View
- 0 Download
- 6 Web of Science
- 6 Crossref
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Abstract
- The stem and root bark of Ulmus macrocarpa Hance has been used as traditional pharmacological agent against inflammation related disorders. The objective of this study was to explore the impact of Ulmus macrocarpa Hance extract (UME) on human gut microbiota. A randomized placebo-controlled clinical study was conducted in healthy adults. The study subjects were given 500 mg/day of UME or placebo orally for 4 weeks. Eighty fecal samples were collected at baseline and 4 weeks of UME or placebo intervention. The gut microbiota variation was evaluated by 16S rRNA profiling. The microbial response was highly personalized, and no statistically significant differences was observed in both species richness and abundance. The number of bacterial species identified in study subjects ranged from 86 to 182 species. The analysis for taxonomical changes revealed an increase in Eubacterium ventriosum, Blautia faecis, Ruminococcus gnavus in the UME group. Functional enrichment of bacterial genes showed an increase in primary and secondary bile acid biosynthesis in UME group. Having known from previous studies Eubacterium regulated bile acid homeostasis in protecting gut microbial architecture and immunity, we suggest that UME supplementation might enhance host immunity by modulating gut microbiota. This is the first stage study and forthcoming clinical studies with larger participants are needed to confirm these findings.
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Citations
Citations to this article as recorded by- Catechin and flavonoid glycosides from the Ulmus genus: Exploring their nutritional pharmacology and therapeutic potential in osteoporosis and inflammatory conditions
Chanhyeok Jeong, Chang Hyung Lee, Jiwon Seo, Jung Han Yoon Park, Ki Won Lee
Fitoterapia.2024; 178: 106188. CrossRef - Comparative transcriptomes of four Elm species provide insights into the genetic features and adaptive evolution of Ulmus spp.
Shijie Wang, Lihui Zuo, Yichao Liu, Lianxiang Long, Jianghao Wu, Mengting Yuan, Jinmao Wang, Minsheng Yang
Forest Ecology and Management.2024; 553: 121560. CrossRef - Dietary Supplementation with Popped Amaranth Modulates the Gut Microbiota in Low Height-for-Age Children: A Nonrandomized Pilot Trial
Oscar de Jesús Calva-Cruz, Cesaré Ovando-Vázquez, Antonio De León-Rodríguez, Fabiola Veana, Eduardo Espitia-Rangel, Samuel Treviño, Ana Paulina Barba-de la Rosa
Foods.2023; 12(14): 2760. CrossRef - Potential lipid-lowering effects of Ulmus macrocarpa Hance extract in adults with untreated high low-density lipoprotein cholesterol concentrations: A randomized double-blind placebo-controlled trial
Ye Li Lee, Sang Yeoup Lee
Frontiers in Medicine.2022;[Epub] CrossRef - Research progress on the relationship between intestinal microecology and intestinal bowel disease
Qianhui Fu, Tianyuan Song, Xiaoqin Ma, Jian Cui
Animal Models and Experimental Medicine.2022; 5(4): 297. CrossRef - The current status of old traditional medicine introduced from Persia to China
Jinmin Shi, Yifan Yang, Xinxin Zhou, Lijun Zhao, Xiaohua Li, Abdullah Yusuf, Mohaddeseh S. M. Z. Hosseini, Fatemeh Sefidkon, Xuebo Hu
Frontiers in Pharmacology.2022;[Epub] CrossRef
- Catechin and flavonoid glycosides from the Ulmus genus: Exploring their nutritional pharmacology and therapeutic potential in osteoporosis and inflammatory conditions
Journal Article
- Description of Microbacterium luteum sp. nov., Microbacterium cremeum sp. nov., and Microbacterium atlanticum sp. nov., three novel C50 carotenoid producing bacteria
- Fuquan Xie , Siwen Niu , Xihuang Lin , Shengxiang Pei , Li Jiang , Yun Tian , Gaiyun Zhang
- J. Microbiol. 2021;59(10):886-897. Published online September 7, 2021
- DOI: https://doi.org/10.1007/s12275-021-1186-5
- 51 View
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- 12 Web of Science
- 13 Crossref
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Abstract
- We have identified three Microbacterium strains, A18JL200T, NY27T, and WY121T, that produce C50 carotenoids. Taxonomy shows they represent three novel species. These strains shared < 98.5% 16S rRNA gene sequence identity with each other and were closely related to Microbacterium aquimaris JCM 15625T, Microbacterium yannicii JCM 18959T, Microbacterium ureisolvens CFH S00084T, and Microbacterium hibisci CCTCC AB 2016180T. Digital DNA-DNA hybridization (dDDH) values and average nucleotide identity (ANI) showed differences among the three strains and from their closest relatives, with values ranging from 20.4% to 34.6% and 75.5% to 87.6%, respectively. These values are below the threshold for species discrimination. Both morphology and physiology also differed from those of phylogenetically related Microbacterium species, supporting that they are indeed novel species. These strains produce C50 carotenoids (mainly decaprenoxanthin). Among the three novel species, A18JL200T had the highest total yield in carotenoids (6.1 mg/L or 1.2 mg/g dry cell weight). Unusual dual isoprenoid biosynthetic pathways (methylerythritol phosphate and mevalonate pathways) were annotated for strain A18JL200T. In summary, we found strains of the genus Microbacterium that are potential producers of C50 carotenoids, but their genome has to be investigated further.
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Citations
Citations to this article as recorded by- Identification, evaluation, control of yellow-causing bacteria and their influence on the quality of high moisture rice-based food
Sijie Zhang, Lin Ou, Cuiping Yi, Qiutao Xie, Yang Shan
Food Control.2025; 168: 110887. CrossRef - Chlamydomonas reinhardtii and Microbacterium forte sp. nov., a mutualistic association that favors sustainable hydrogen production
Neda Fakhimi, María Jesus Torres, Emilio Fernández, Aurora Galván, Alexandra Dubini, David González-Ballester
Science of The Total Environment.2024; 913: 169559. CrossRef - Discovery of a new bacterium, Microbacterium betulae sp. nov., in birch wood associated with hypersensitivity pneumonitis in woodworkers
Mariola Paściak, Krzysztof J. Pawlik, Dariusz Martynowski, Łukasz Łaczmański, Jarosław Ciekot, Bogumiła Szponar, Angelina Wójcik‐Fatla, Barbara Mackiewicz, Ewelina Farian, Grażyna Cholewa, Alicja Cholewa, Jacek Dutkiewicz
Environmental Microbiology Reports.2024;[Epub] CrossRef - Microbacterium aquilitoris sp. nov. and Microbacterium gwkjiense sp. nov., isolated from beach
Soon Dong Lee, Hong Lim Yang, Ji-Sun Kim, In Seop Kim
Archives of Microbiology.2024;[Epub] CrossRef -
Microbacterium algihabitans sp. nov., Microbacterium phycohabitans sp. nov., and Microbacterium galbum sp. nov., isolated from dried beach seaweeds
Soon Dong Lee, Hong Lim Yang, In Seop Kim
International Journal of Systematic and Evolutionary Microbiology .2024;[Epub] CrossRef - Association between the gut microbiome and carotenoid plumage phenotype in an avian hybrid zone
Marcella D. Baiz, Andrew W. Wood, David P. L. Toews
Proceedings of the Royal Society B: Biological Sciences.2024;[Epub] CrossRef - Description of Microbacterium dauci sp. nov., a plant growth hormone indoleacetic acid-producing and nitrogen-fixing bacterium isolated from carrot rhizosphere soil
Jiawen Zheng, Yunyu Liao, Yang Li, Dongsheng Li, Yaping Sun, Zijun Xiao
Archives of Microbiology.2024;[Epub] CrossRef - Can Sugarcane Yield and Health Be Altered with Fully Mechanized Management?
Jian Xiao, Tian Liang, Shangdong Yang, Hongwei Tan
Agronomy.2023; 13(1): 153. CrossRef - Evaluation of Various Escherichia coli Strains for Enhanced Lycopene Production
Jun Ren, Junhao Shen, Thi Duc Thai, Min-gyun Kim, Seung Ho Lee, Wonseop Lim, Dokyun Na
Journal of Microbiology and Biotechnology.2023; 33(7): 973. CrossRef - Effects of flavonoids on membrane adaptation of food-associated bacteria
Maria Linden, Alexander Flegler, Michelle M. Feuereisen, Fabian Weber, André Lipski, Andreas Schieber
Biochimica et Biophysica Acta (BBA) - Biomembranes.2023; 1865(4): 184137. CrossRef - Four new Microbacterium species isolated from seaweeds and reclassification of five Microbacterium species with a proposal of Paramicrobacterium gen. nov. under a genome-based framework of the genus Microbacterium
Soon Dong Lee, Hong Lim Yang, In Seop Kim
Frontiers in Microbiology.2023;[Epub] CrossRef - Microbacterium Cluster EA Bacteriophages: Phylogenomic Relationships and Host Range Predictions
Mark Milhaven, Cyril J. Versoza, Aman Garg, Lindsey Cai, Sanjana Cherian, Kamalei Johnson, Kevin Salas Perez, Madison Blanco, Jackelyn Lobatos, Corinne Mitra, Maria Strasser, Susanne P. Pfeifer
Microorganisms.2023; 11(1): 170. CrossRef - Valid publication of new names and new combinations effectively published outside the IJSEM. Validation List no. 203
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
- Identification, evaluation, control of yellow-causing bacteria and their influence on the quality of high moisture rice-based food
Review
- [MINIREVIEW]The rapid adaptation of SARS-CoV-2–rise of the variants: transmission and resistance
- Sandrine M. Soh , Yeongjun Kim , Chanwoo Kim , Ui Soon Jang , Hye-Ra Lee
- J. Microbiol. 2021;59(9):807-818. Published online August 27, 2021
- DOI: https://doi.org/10.1007/s12275-021-1348-5
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- 16 Crossref
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Abstract
- The causative factor of COVID-19, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is continuously mutating. Interestingly, identified mutations mainly occur in the spike (S) protein which interacts with the ACE2 receptor and is cleaved via serine protease TMPRSS2. Some mutated strains are becoming dominant in various parts of the globe because of increased transmissibility as well as cell entry efficacy. Remarkably, the neutralizing activity of monoclonal antibodies, convalescent sera, and vaccines against the variants has been reported to be significantly reduced. Therefore, the efficacy of various monoclonal antibodies therapy and vaccines against these variants is becoming a great global concern. We herein summarize the current status of SARS-CoV- 2 with gears shifted towards the recent and most common genetic variants in relation to transmission, neutralizing activity, and vaccine efficacy.
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Citations
Citations to this article as recorded by- Understanding the Molecular Actions of Spike Glycoprotein in SARS-CoV-2 and Issues of a Novel Therapeutic Strategy for the COVID-19 Vaccine
Yasunari Matsuzaka, Ryu Yashiro
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Tae-Hun Kim, Sojung Bae, Sunggeun Goo, Jinjong Myoung
Journal of Microbiology and Biotechnology.2023; 33(12): 1587. CrossRef - Analysis of 3.5 million SARS-CoV-2 sequences reveals unique mutational trends with consistent nucleotide and codon frequencies
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Journal Articles
- Genetic diversity and population structure of the amylolytic yeast Saccharomycopsis fibuligera associated with Baijiu fermentation in China
- Ju-Wei Wang , Pei-Jie Han , Da-Yong Han , Sen Zhou , Kuan Li , Peng-Yu He , Pan Zhen , Hui-Xin Yu , Zhen-Rong Liang , Xue-Wei Wang , Feng-Yan Bai
- J. Microbiol. 2021;59(8):753-762. Published online July 5, 2021
- DOI: https://doi.org/10.1007/s12275-021-1115-7
- 44 View
- 0 Download
- 15 Web of Science
- 14 Crossref
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Abstract
- The amylolytic yeast Saccharomycopsis fibuligera is a predominant species in starters and the early fermentation stage of Chinese liquor (Baijiu). However, the genetic diversity of the species remains largely unknown. Here we sequenced the genomes of 97 S. fibuligera strains from different Chinese Baijiu companies. The genetic diversity and population structure of the strains were analyzed based on 1,133 orthologous genes and the whole genome single nucleotide polymorphisms (SNPs). Four main lineages were recognized. One lineage contains 60 Chinese strains which are exclusively homozygous with relatively small genome sizes (18.55–18.72 Mb) and low sequence diversity. The strains clustered in the other three lineages are heterozygous with larger genomes (21.85–23.72 Mb) and higher sequence diversity. The genomes of the homozygous strains showed nearly 100% coverage with the genome of the reference strain KPH12 and the sub-genome A of the hybrid strain KJJ81 at the above 98% sequence identity level. The genomes of the heterozygous strains showed nearly 80% coverage with both the sub-genome A and the whole genome of KJJ81, suggesting that the Chinese heterozygous strains are also hybrids with nearly 20% genomes from an unidentified source. Eighty-three genes were found to show significant copy number variation between different lineages. However, remarkable lineage specific variations in glucoamylase and α-amylase activities and growth profiles in different carbon sources and under different environmental conditions were not observed, though strains exhibiting relatively high glucoamylase activity were mainly found from the homozygous lineage.
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Citations
Citations to this article as recorded by- Isolation of Saccharomycopsis species from plant material
Carmen Dost, Florian Michling, Davies Kaimenyi, Mareike Rij, Jürgen Wendland
Microbiological Research.2024; 283: 127691. CrossRef - Microbial enzymes: the bridge between Daqu flavor and microbial communities
Zelong Zhong, Tianyi Liu, Kaiping He, Min Zhong, Xiaoxue Chen, Yansong Xue, Beizhong Han, Diqiang Wang, Jun Liu
Food Innovation and Advances.2024; 3(4): 426. CrossRef - Exploring the heterogeneity of community and function and correspondence of “species-enzymes” among three types of Daqu with different fermentation peak-temperature via high-throughput sequencing and metagenomics
Ying Huang, Dong Li, Yu Mu, Zhiyu Zhu, Yuzhang Wu, Qi Qi, Yingchun Mu, Wei Su
Food Research International.2024; 176: 113805. CrossRef - Deciphering the core microbes and their interactions in spontaneous Baijiu fermentation: A comprehensive review
Jiamu Kang, Xiaoning Huang, Rengshu Li, Yuandi Zhang, Xiao-Xue Chen, Bei-Zhong Han
Food Research International.2024; 188: 114497. CrossRef - Correlational analysis of physicochemical indexes, microbial communities, and volatile components in light-flavor Daqu from north and south regions of China
Qi Yu, Feiyan Mou, Junwen Xiao, Cheng Zhan, Liang Li, Xu Chang, Xiaoyuan Dong, Maobin Chen, Xinrui Wang, Mei Chen, Shangling Fang
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Food Bioscience.2024; 60: 104347. CrossRef - Exploring the Role of Active Functional Microbiota in Flavor Generation by Integrated Metatranscriptomics and Metabolomics during Niulanshan Baijiu Fermentation
Yuanyuan Pan, Ying Wang, Wenjun Hao, Sen Zhou, Chengbao Duan, Qiushi Li, Jinwang Wei, Gang Liu
Foods.2023; 12(22): 4140. CrossRef - Dynamic changes and correlations of microbial communities, physicochemical properties, and volatile metabolites during Daqu fermentation of Taorong-type Baijiu
Yanbo Liu, Haideng Li, Shumei Dong, Zhou Zhou, Zhenke Zhang, Runna Huang, Suna Han, Jianguang Hou, Chunmei Pan
LWT.2023; 173: 114290. CrossRef - The differences in carbohydrate utilization ability between six rounds of Sauce-flavor Daqu
Qi Zhu, Liangqiang Chen, Zheng Peng, Qiaoling Zhang, Wanqiu Huang, Fan Yang, Guocheng Du, Juan Zhang, Li Wang
Food Research International.2023; 163: 112184. CrossRef - Microbial Community Affects Daqu Quality and the Production of Ethanol and Flavor Compounds in Baijiu Fermentation
Pei-Jie Han, Lu-Jun Luo, Ying Han, Liang Song, Pan Zhen, Da-Yong Han, Yu-Hua Wei, Xin Zhou, Zhang Wen, Jun-Zhi Qiu, Feng-Yan Bai
Foods.2023; 12(15): 2936. CrossRef - Comparison of physicochemical characteristics and microbiome profiles of low-temperature Daqu with and without adding tartary buckwheat
Jiamu Kang, Liangliang Jia, Zhongxiao Zhang, Min Zhang, Xiaoning Huang, Xiaoxue Chen, Bei-Zhong Han
Food Bioscience.2022; 49: 101931. CrossRef - What Are the Main Factors That Affect the Flavor of Sauce-Aroma Baijiu
Jiao Niu, Shiqi Yang, Yi Shen, Wei Cheng, Hehe Li, Jinyuan Sun, Mingquan Huang, Baoguo Sun
Foods.2022; 11(21): 3534. CrossRef - Insights into the bacterial, fungal, and phage communities and volatile profiles in different types of Daqu
Jiamu Kang, Xiaoxue Chen, Bei-Zhong Han, Yansong Xue
Food Research International.2022; 158: 111488. CrossRef
- Isolation of Saccharomycopsis species from plant material
- UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis
- Jihyeon Kim , Seong-In Na , Dongwook Kim , Jongsik Chun
- J. Microbiol. 2021;59(6):609-615. Published online May 29, 2021
- DOI: https://doi.org/10.1007/s12275-021-1231-4
- 55 View
- 0 Download
- 135 Web of Science
- 138 Crossref
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Abstract
- Phylogenomic tree reconstruction has recently become a routine and critical task to elucidate the evolutionary relationships among bacterial species. The most widely used method utilizes the concatenated core genes, universally present in a single-copy throughout the bacterial domain. In our previous study, a bioinformatics pipeline termed Up-to-date Bacterial Core Genes (UBCG) was developed with a set of bacterial core genes selected from 1,429 species covering 28 phyla. In this study, we revised a new bacterial core gene set, named UBCG2, that was selected from the more extensive genome sequence set belonging to 3,508 species spanning 43 phyla. UBCG2 comprises 81 genes with nine Clusters of Orthologous Groups of proteins (COGs) functional categories. The new gene set and complete pipeline are available at http://leb.snu.ac.kr/ubcg2.
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European Journal of Clinical Microbiology & Infectious Diseases.2024;[Epub] CrossRef - Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota
Nancy O. Nou, Jonathan K. Covington, Dengxun Lai, Xavier Mayali, Cale O. Seymour, Juliet Johnston, Jian-Yu Jiao, Steffen Buessecker, Damon Mosier, Alise R. Muok, Nicole Torosian, Allison M. Cook, Ariane Briegel, Tanja Woyke, Emiley Eloe-Fadrosh, Nicole Sh
Nature Communications.2024;[Epub] CrossRef - Isolation of Sphingopyxis kveilinensis sp. nov., a Potential Antibiotic-Degrading Bacterium, from a Karst Wetland
Ying Chen, Jie Deng, Chengjian Yu
Current Microbiology.2024;[Epub] CrossRef - Transmission and Persistence of Infant Gut-Associated Bifidobacteria
Margaret A. Hilliard, David A. Sela
Microorganisms.2024; 12(5): 879. CrossRef - The Type Strain of Bifidobacterium indicum Scardovi and Trovatelli 1969 (Approved Lists 1980) is ATCC 25912, not DSM 20214, and Rejection to Reclassify Bifidobacterium coryneforme as Bifidobacterium indicum
Cheng-Shan Jiang, Chun Yan Li, Chun Tao Gu
Current Microbiology.2024;[Epub] CrossRef - Cultivation of deep-sea bacteria from the Northwest Pacific Ocean and characterization of Limnobacter profundi sp. nov., a phenol-degrading bacterium
Mirae Kim, Jaeho Song, Seung Yeol Shin, Kazuhiro Kogure, Ilnam Kang, Jang-Cheon Cho
Frontiers in Marine Science.2024;[Epub] CrossRef -
Faecalibacterium taiwanense sp. nov., isolated from human faeces
Jong-Shian Liou, Wei-Ling Zhang, Li-Wen Hsu, Chih-Chieh Chen, Yu-Ting Wang, Koji Mori, Kohei Hidaka, Moriyuki Hamada, Lina Huang, Koichi Watanabe, Chien-Hsun Huang
International Journal of Systematic and Evolutionary Microbiology .2024;[Epub] CrossRef -
Mesorhizobium retamae sp. nov., a novel non-nodulating and non-nitrogen-fixing species isolated from the root nodules of Retama raetam sampled in Tunisia
Roukaya Ben Gaied, Imed Sbissi, Mohamed Tarhouni, Katharina Huber, Jacqueline Wolf, Meina Neumann-Schaal, Imen Nouioui, Faten Ghodhbane-Gtari, Maher Gtari
International Journal of Systematic and Evolutionary Microbiology .2024;[Epub] CrossRef - Genomic and phenotypic characterization of 26 novel marine bacterial strains with relevant biogeochemical roles and widespread presence across the global ocean
Xavier Rey-Velasco, Teresa Lucena, Ana Belda, Josep M. Gasol, Olga Sánchez, David R. Arahal, María J. Pujalte
Frontiers in Microbiology.2024;[Epub] CrossRef - Lacticaseibacillus jixiensis sp. nov., Isolated from Traditional Chinese Pickle
Si-Tong Song, Chun Yan Li, Chun Tao Gu
Current Microbiology.2024;[Epub] CrossRef -
Paracoccus spongiarum sp. nov., isolated from the marine sponge, Phakellia elegans
Soo-Bin Kim, Kyung Hyun Kim, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology .2024;[Epub] CrossRef - Taxonomic and genomic characterization of a siderophore-producing bacterium, Rhodoligotrophos ferricapiens sp. nov isolated from lettuce cultivation soil
Yu-Jin Kim, Yong-Seok Kim, Chang-Jun Cha
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Saccharopolyspora mangrovi sp. nov., a novel mangrove soil actinobacterium with distinct metabolic potential revealed by comparative genomic analysis
Yi-Ting Lu, Yi-Yi Wu, Ya-Nan Li, Wei-Yi Zheng, Wen-Zheng Liu
Archives of Microbiology.2024;[Epub] CrossRef - The Genome of a New Halorubrum distributum Strain ICIS4 Isolated from the Culture of a Microalga Dunaliella salina
E. A. Selivanova, A. S. Balkin, Yu. A. Khlopko, V. Ya. Kataev, A. O. Plotnikov
Microbiology.2024; 93(4): 482. CrossRef - Luteibacter sahnii sp. nov., A Novel Yellow-Colored Xanthomonadin Pigment Producing Probiotic Bacterium from Healthy Rice Seed Microbiome
Gagandeep Jaiswal, Rekha Rana, Praveen Kumar Nayak, Rekha Chouhan, Sumit G. Gandhi, Hitendra K. Patel, Prabhu B. Patil
Current Microbiology.2024;[Epub] CrossRef - Genomic analysis of the class Phycisphaerae reveals a versatile group of complex carbon-degrading bacteria
Wouter B. Lenferink, Theo A. van Alen, Mike S. M. Jetten, Huub J. M. Op den Camp, Maartje A. H. J. van Kessel, Sebastian Lücker
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Analysis of Whole-Genome for Identification of Seven Penicillium Species with Significant Economic Value
Yuanhao Huang, Lianguo Fu, Yutong Gan, Guihong Qi, Lijun Hao, Tianyi Xin, Wenjie Xu, Jingyuan Song
International Journal of Molecular Sciences.2024; 25(15): 8172. CrossRef - Jatrophihabitans cynanchi sp. nov., isolated from rhizosphere soil of Cynanchum wilfordii
Min Kuk Suh, Ji-Sun Kim, Mi Kyung Eom, Han Sol Kim, Hyo Eun Do, Yong Kook Shin, Jung- Sook Lee
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Proposal of Crystallibacter gen. nov., Crystallibacter permensis sp. nov. and Crystallibacter degradans sp. nov. for the salt-tolerant and aromatics degrading actinobacteria, and reclassification of Arthrobacter crystallopoietes as Crystallibacter crystal
Elena G. Plotnikova, Elena V. Ariskina, Olga V. Yastrebova, Natalia V. Potekhina, Alexander N. Avtukh, Sergey V. Tarlachkov, Irina P. Starodumova, Lyubov V. Dorofeeva, Lyudmila I. Evtushenko
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Helicovermis profundi gen. nov., sp. nov., a novel mesophilic, asporogenous bacterium within the Clostridia isolated from a deep-sea hydrothermal vent chimney
Urara Miyazaki, Daiki Mizutani, Yurina Hashimoto, Akihiro Tame, Shigeki Sawayama, Junichi Miyazaki, Ken Takai, Satoshi Nakagawa
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Patterns of Change in Nucleotide Diversity Over Gene Length
Farhan Ali, Brian Golding
Genome Biology and Evolution.2024;[Epub] CrossRef - SeqCode facilitates naming of South African rhizobia left in limbo
Melandré van Lill, Stephanus N. Venter, Esther K. Muema, Marike Palmer, Wai Y. Chan, Chrizelle W. Beukes, Emma T. Steenkamp
Systematic and Applied Microbiology.2024; 47(2-3): 126504. CrossRef - Bifidobacterium apicola sp. nov., isolated from the gut of honeybee (Apis mellifera)
Ting-Yu Wang, Hao Wang, Chun Tao Gu
International Journal of Systematic and Evolutionary Microbiology .2024;[Epub] CrossRef - Detecting horizontal gene transfer among microbiota: an innovative pipeline for identifying co-shared genes within the mobilome through advanced comparative analysis
Jana Schwarzerova, Michal Zeman, Vladimir Babak, Katerina Jureckova, Marketa Nykrynova, Margaret Varga, Wolfram Weckwerth, Monika Dolejska, Valentine Provaznik, Ivan Rychlik, Darina Cejkova, Feng Gao, Johannes Wöstemeyer, Shay Tal, Alejandro Piña-Iturbe,
Microbiology Spectrum.2024;[Epub] CrossRef - Host genetic regulation of human gut microbial structural variation
Daria V. Zhernakova, Daoming Wang, Lei Liu, Sergio Andreu-Sánchez, Yue Zhang, Angel J. Ruiz-Moreno, Haoran Peng, Niels Plomp, Ángela Del Castillo-Izquierdo, Ranko Gacesa, Esteban A. Lopera-Maya, Godfrey S. Temba, Vesla I. Kullaya, Sander S. van Leeuwen, R
Nature.2024; 625(7996): 813. CrossRef - Uncovering the lignin-degrading potential of Serratia quinivorans AORB19: insights from genomic analyses and alkaline lignin degradation
Nadia Sufdar Ali, Subarna Thakur, Mengwei Ye, Fanny Monteil-Rivera, Youlian Pan, Wensheng Qin, Trent Chunzhong Yang
BMC Microbiology.2024;[Epub] CrossRef - Taxonomic note on Kocuria and Rothia: taxogenomic insights for addressing misidentifications and proposing new combinations and new subspecies
Faten Ghodhbane-Gtari, Mohamed Aziz Haj Nasr, Rafik Gatri, Maher Gtari
International Journal of Systematic and Evolutionary Microbiology .2024;[Epub] CrossRef - Chengkuizengella axinellae sp. nov., a symbiotic bacterium isolated from a marine sponge of the genus Axinella
Yea-Lin Moon, Kyung Hyun Kim, Jin-Sook Park
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Adlercreutzia faecimuris sp. nov., producing propionate and acetate isolated from mouse feces
Min Kuk Suh, Jong- Sik Jin, Hyo Eun Do, Ji-Sun Kim, Mi Kyung Eom, Han Sol Kim, Jung- Sook Lee
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Xanthomonas chitinilytica sp. nov., a novel chitinolytic bacterium isolated from a microbial fermentation bed material
Xiaodong Liu, Xin Liu, Zhenshan Deng, Xiaolong He, Yingying Jiang
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Kribbella caucasensis sp. nov. from the Soil of the North Caucasus Mountains
A. N. Avtukh, E. V. Ariskina, L. M. Baryshnikova, N. V. Prisyazhnaya, L. V. Dorofeeva, L. I. Evtushenko
Microbiology.2024; 93(6): 730. CrossRef -
Peptostreptococcus equinus sp. nov., isolated from horse faeces
Hye Su Jung, Jeong Ui Yun, Mi-Ja Jung, Hye Seon Song, Yeon Bee Kim, Yujin Kim, Min Ji Lee, Jisu Lee, Che Ok Jeon, Seong Woon Roh, Tae Woong Whon, Joon-Gyu Kim, Se Hee Lee
International Journal of Systematic and Evolutionary Microbiology .2024;[Epub] CrossRef - Aurantiacibacter poecillastricola sp. nov., Isolated from the Marine Sponge, Poecillastra wondoensis, and Reclassification of Erythrobacter alti as Aurantiacibacter alti comb. nov.
Soo-Bin Kim, Kyung Hyun Kim, Jin-Sook Park
Journal of Microbiology and Biotechnology.2024;[Epub] CrossRef - Philodulcilactobacillus myokoensis gen. nov., sp. nov., a fructophilic, acidophilic, and agar-phobic lactic acid bacterium isolated from fermented vegetable extracts
Tomoaki Kouya, Yohei Ishiyama, Shota Ohashi, Ryota Kumakubo, Takeshi Yamazaki, Toshiki Otaki, Guadalupe Virginia Nevárez-Moorillón
PLOS ONE.2023; 18(6): e0286677. CrossRef - Comparative Genomic Analysis and BTEX Degradation Pathways of a Thermotolerant Cupriavidus cauae PHS1
Chandran Sathesh-Prabu, Jihoon Woo, Yuchan Kim, Suk Min Kim, Sun Bok Lee, Che Ok Jeon, Donghyuk Kim, Sung Kuk Lee
Journal of Microbiology and Biotechnology.2023; 33(7): 875. CrossRef -
Complete genome sequence of the emerging pathogen
Cysteiniphilum
spp. and comparative genomic analysis with genus
Francisella
: Insights into its genetic diversity and potential virulence traits
Changrui Qian, Mengxin Xu, Zeyu Huang, Miran Tan, Cheng Fu, Tieli Zhou, Jianming Cao, Cui Zhou
Virulence.2023;[Epub] CrossRef -
Psychroserpens ponticola sp. nov. and Marinomonas maritima sp. nov., isolated from seawater
Sylvia Kristyanto, Jaejoon Jung, Jeong Min Kim, Byeong Jun Choi, Dong Min Han, Sung Chul Lee, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef - Atopomonas sediminilitoris sp. nov., isolated from beach sediment of Zhairuo Island, China
Kejing Li, Zhenbo Ye, Gen Chen, Kaiwen Zheng, Jun Yin, Sanjit Chandra Debnath, Cen Yan, Yi Hong, Zhen Guo, Pinmei Wang, Fabai Wu, Daoqiong Zheng
Antonie van Leeuwenhoek.2023; 116(2): 97. CrossRef - Chryseobacterium paludis sp. nov. and Chryseobacterium foetidum sp. nov. Isolated from the Aquatic Environment, South Korea
Miryung Kim, Yong-Seok Kim, Chang-Jun Cha
Journal of Microbiology.2023; 61(1): 37. CrossRef -
Paenibacillus soyae sp. nov., isolated from the rhizosphere of soya bean
Hui Zhao, Yue Su, Qihui Gu, Jumei Zhang, Xinqiang Xie, Qingping Wu
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef - Geothrix oryzisoli sp. nov., a ferric iron-reducing bacterium isolated from paddy soil
Shuang Han, Rong Tang, Shang Yang, Cheng-Jie Xie, Manik Prabhu Narsing Rao, Christopher Rensing, Guo-Hong Liu, Shun-Gui Zhou
Antonie van Leeuwenhoek.2023; 116(5): 477. CrossRef - Description of Luteibacter aegosomatis sp. nov., Luteibacter aegosomaticola sp. nov., and Luteibacter aegosomatissinici sp. nov. isolated from the Intestines of Aegosoma sinicum Larvae
Hae-In Joe, Jee-Won Choi, June-Young Lee, Hojun Sung, Su-Won Jeong, Yun-Seok Jeong, Jae-Yun Lee, Jin-Woo Bae
Journal of Microbiology.2023; 61(6): 603. CrossRef -
Hoeflea algicola sp. nov. and Hoeflea ulvae sp. nov., isolated from phycosphere of marine algae
Ju Hye Baek, Sylvia Kristyanto, Jeong Min Kim, Dong Min Han, Zhe-Xue Quan, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef -
Muricauda myxillae sp. nov., isolated from a marine sponge (Myxilla rosacea), and reclassification of Flagellimonas hymeniacidonis as Muricauda symbiotica nom. nov.
Yea-Lin Moon, Kyung-Hyun Kim, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef - Description and Genomic Characteristics of Weissella fermenti sp. nov., Isolated from Kimchi
Jae Kyeong Lee, Ju Hye Baek, Dong Min Han, Se Hee Lee, So Young Kim, Che Ok Jeon
Journal of Microbiology and Biotechnology.2023; 33(11): 1448. CrossRef -
Dyadobacter pollutisoli sp. nov., isolated from plastic waste landfill soil
Kyeong Ryeol Kim, Jeong Min Kim, Jae Kyeong Lee, Dong Min Han, Lujiang Hao, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef - UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi
Dongwook Kim, Cameron L M Gilchrist, Jongsik Chun, Martin Steinegger
Nucleic Acids Research.2023; 51(D1): D777. CrossRef - Ancient Rapid Radiation Explains Most Conflicts Among Gene Trees and Well-Supported Phylogenomic Trees of Nostocalean Cyanobacteria
Carlos J Pardo-De la Hoz, Nicolas Magain, Bryan Piatkowski, Luc Cornet, Manuela Dal Forno, Ignazio Carbone, Jolanta Miadlikowska, François Lutzoni, Claudia Lemus-Solis
Systematic Biology.2023; 72(3): 694. CrossRef - Zwartia vadi sp. nov., a Novel Species of the GKS98 Cluster Isolated from a Stream, and the Reclassification of ‘Achromobacter Panacis’ as Zwartia panacis comb. nov
Miri S. Park, Ilnam Kang, Jang-Cheon Cho
Microorganisms.2023; 11(9): 2150. CrossRef - Comparative genomics reveals environmental adaptability and antimicrobial activity of a novel Streptomyces isolated from soil under black Gobi rocks
Ying Wen, Binglin Zhang, Gaosen Zhang, Minghui Wu, Ximing Chen, Tuo Chen, Guangxiu Liu, Wei Zhang
Antonie van Leeuwenhoek.2023; 116(12): 1407. CrossRef - Phylogenomic Insights on the Xanthomonas translucens Complex, and Development of a TaqMan Real-Time Assay for Specific Detection of pv. translucens on Barley
James T. Tambong, Renlin Xu, Maria Constanza Fleitas, Lipu Wang, Keith Hubbard, Randy Kutcher
Phytopathology®.2023; 113(11): 2091. CrossRef - Microvirga terrae sp. nov., Isolated from Soil
Kyung Hyun Kim, Ju Hye Baek, Sang Eun Jeong, Lujiang Hao, Che Ok Jeon
Current Microbiology.2023;[Epub] CrossRef - Incidence, genetic diversity, and antimicrobial resistance profiles of Vibrio parahaemolyticus in seafood in Bangkok and eastern Thailand
Chartchai Changsen, Somsak Likhitrattanapisal, Kamonwan Lunha, Wiyada Chumpol, Surasak Jiemsup, Anuphap Prachumwat, Darin Kongkasuriyachai, Supawadee Ingsriswang, Soraya Chaturongakul, Aekarin Lamalee, Suganya Yongkiettrakul, Sureemas Buates
PeerJ.2023; 11: e15283. CrossRef - Streptomonospora mangrovi sp. nov., isolated from mangrove soil showing similar metabolic capabilities, but distinct secondary metabolites profiles
Cheng Zhen, Xin-Kai Chen, Xian-Feng Ge, Wen-Zheng Liu
Archives of Microbiology.2023;[Epub] CrossRef -
Alkalicoccobacillus porphyridii sp. nov., isolated from a marine red alga, reclassification of Shouchella plakortidis and Shouchella gibsonii as Alkalicoccobacillus plakortidis comb. nov. and Alkalicoccobacillus gibsonii comb. nov., and emend
Kyung Hyun Kim, Dong Min Han, Jae Kyeong Lee, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef - UACG: Up-to-Date Archaeal Core Genes and Software for Phylogenomic Tree Reconstruction
Seong-In Na, Michael James Bailey, Mauricio Chalita, Jae Hyoung Cho, Jongsik Chun
Journal of Microbiology.2023; 61(7): 683. CrossRef -
Alishewanella maricola sp. nov., isolated from seawater of the Yellow Sea
Kyung Hyun Kim, Jeong Min Kim, Hyun Mi Jin, Lujiang Hao, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef -
Cutibacterium equinum sp. nov., isolated from horse faeces
Jeong Ui Yun, Hye Su Jung, Mi-Ja Jung, Hye Seon Song, Yeon Bee Kim, Yujin Kim, Joon-Gyu Kim, Seong Woon Roh, Se Hee Lee, Jun Sik Lee, Tae Woong Whon
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef - Sugar Concentration, Nitrogen Availability, and Phylogenetic Factors Determine the Ability of Acinetobacter spp. and Rosenbergiella spp. to Grow in Floral Nectar
José R. Morales-Poole, Clara de Vega, Kaoru Tsuji, Hans Jacquemyn, Robert R. Junker, Carlos M. Herrera, Chris Michiels, Bart Lievens, Sergio Álvarez-Pérez
Microbial Ecology.2023; 86(1): 377. CrossRef -
Silvimonas soli sp. nov., a new member of Chromobacteriaceae isolated from soil in Norrbyskär island, Sweden
Martina Jerabkova, Tereza Smrhova, Eglantina Lopez-Echartea, Jiri Dresler, Jachym Suman, Gabriela Kapinusova, Tomas Cajthaml, Zdena Skrob, Robin Kyclt, Jonas Fagerman, Michal Strejcek, Ondrej Uhlik
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef -
Actinophytocola gossypii sp. nov. and Streptomyces gossypii sp. nov., two novel actinomycetes isolated from rhizosphere soil of cotton
Xianfeng Ge, Shenrong Yang, Cheng Zhen, Wenzheng Liu
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef - Phylogenomic analysis of the genus Rosenbergiella and description of Rosenbergiella gaditana sp. nov., Rosenbergiella metrosideri sp. nov., Rosenbergiella epipactidis subsp. epipactidis subsp. nov., Rosenbergiella epipactidis subsp. californiensis subsp.
Sergio Álvarez-Pérez, Clara de Vega, Kristof Vanoirbeek, Kaoru Tsuji, Hans Jacquemyn, Tadashi Fukami, Chris Michiels, Bart Lievens
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef -
Thermomonas mangrovi sp. nov., isolated from soil of a mangrove nature reserve
Shanshan Xu, Junpeng Chen, Si Chen, Qiliang Lai, Zengzhi Liu, Ying Xu
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef -
Tahibacter soli sp. nov., isolated from soil and Tahibacter amnicola sp. nov., isolated from freshwater
Ju Hye Baek, Dong Min Han, Jeong Min Kim, Baolei Jia, Ji Young Jung, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef - Phylogenomic reappraisal of the family Rhizobiaceae at the genus and species levels, including the description of Ectorhizobium quercum gen. nov., sp. nov.
Tengfei Ma, Han Xue, Chungen Piao, Ning Jiang, Yong Li
Frontiers in Microbiology.2023;[Epub] CrossRef -
Antarcticirhabdus aurantiaca gen. nov., sp. nov., isolated from Antarctic gravel soil
Jie Du, Ying Zhang, Di Xin, Yuhua Xin, Jianli Zhang
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef - Caldimonas mangrovi sp. nov., Isolated from Mangrove Soil
S. R. Yang, Y. Y. Liu, X. F. Ge, W. Z. Liu
Microbiology.2023; 92(4): 500. CrossRef - Chitinophaga horti sp. nov., Isolated from Garden Soil
Dong Min Han, Ju Hye Baek, Dae Gyu Choi, Myeong Seo Jin, Che Ok Jeon
Current Microbiology.2023;[Epub] CrossRef - Streptomyces pacificus sp. nov., a novel spongiicolazolicin-producing actinomycete isolated from a coastal sediment
Miku Takahashi, Shoya Shinohara, Moriyuki Hamada, Tomohiko Tamura, Hideo Dohra, Shinya Kodani, Youji Nakagawa, Susumu Kokubo, Masayuki Hayakawa, Hideki Yamamura
The Journal of Antibiotics.2023; 76(2): 93. CrossRef - MALDI-TOF MS analysis of Burkholderia pseudomallei and closely related species isolated from soils and water in Khon Kaen, Thailand
Nut Nithimongkolchai, Yothin Hinwan, Benjawan Kaewseekhao, Pisit Chareonsudjai, Pipat Reungsang, Ratthaphol Kraiklang, Sorujsiri Chareonsudjai, Lumyai Wonglakorn, Ploenchan Chetchotisakd, Auttawit Sirichoat, Arnone Nithichanon, Kiatichai Faksri
Infection, Genetics and Evolution.2023; 116: 105532. CrossRef - Flavobacterium psychrotrophum sp. nov. and Flavobacterium panacagri sp. nov., Isolated from Freshwater and Soil
Yong-Seok Kim, Eun-Mi Hwang, Chang-Myeong Jeong, Chang-Jun Cha
Journal of Microbiology.2023; 61(10): 891. CrossRef - VBCG: 20 validated bacterial core genes for phylogenomic analysis with high fidelity and resolution
Renmao Tian, Behzad Imanian
Microbiome.2023;[Epub] CrossRef - tilS and rpoB: New Molecular Markers for Phylogenetic and Biodiversity Studies of the Genus Thiothrix
Nikolai V. Ravin, Dmitry D. Smolyakov, Nikita D. Markov, Alexey V. Beletsky, Andrey V. Mardanov, Tatyana S. Rudenko, Margarita Yu. Grabovich
Microorganisms.2023; 11(10): 2521. CrossRef -
Thermomonas paludicola sp. nov., isolated from a lotus wetland
Mirae Kim, Miri S. Park, Ilnam Kang, Jang-Cheon Cho
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef -
Octadecabacter algicola sp. nov. and Octadecabacter dasysiphoniae sp. nov., isolated from a marine red alga and emended description of the genus Octadecabacter
Myeong Seo Jin, Kyung Hyun Kim, Ju Hye Baek, Jeong Min Kim, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef - Flavihumibacter fluminis sp. nov. and Flavihumibacter rivuli sp. nov., isolated from a freshwater stream
Miri S. Park, Hyeonuk Sa, Ilnam Kang, Jang-Cheon Cho
Journal of Microbiology.2022; 60(8): 806. CrossRef - Exploring the genome of Lactobacillaceae spp. Sy-1 isolated from Heterotrigona itama honey
Syariffah Nuratiqah Syed Yaacob, Fahrul Huyop, Mailin Misson, Roswanira Abdul Wahab, Nurul Huda
PeerJ.2022; 10: e13053. CrossRef - Micrococcus porci sp. nov., Isolated from Feces of Black Pig (Sus scrofa)
Ai-Yun Lee, Chia-Hsuan Chen, Jong-Shian Liou, Yu-Chun Lin, Moriyuki Hamada, Yu-Ting Wang, Lin-Liang Peng, Shen-Chang Chang, Chih-Chieh Chen, Chuen-Fu Lin, Lina Huang, Chien-Hsun Huang
Life.2022; 12(11): 1749. CrossRef - Pseudonocardia humida sp. nov., an Actinomycete Isolated from Mangrove Soil Showing Distinct Distribution Pattern of Biosynthetic Gene Clusters
Zhen-Yu Zan, Xian-Feng Ge, Rui-Rui Huang, Wen-Zheng Liu
Current Microbiology.2022;[Epub] CrossRef -
Occultella gossypii sp. nov., an alkali-resistant isolate from soil sampled in a cotton field
Xianfeng Ge, Ruirui Huang, Wenzheng Liu
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef - Rhodococcus oxybenzonivorans sp. nov., a benzophenone-3-degrading bacterium, isolated from stream sediment
Ju Hye Baek, Woonhee Baek, Sang Eun Jeong, Sung Chul Lee, Hyun Mi Jin, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology.2022;[Epub] CrossRef - Pedobacter aquae sp. nov., a multi-drug resistant bacterium isolated from fresh water
Le Tran Tien Chau, Yong-Seok Kim, Chang-Jun Cha
Antonie van Leeuwenhoek.2022; 115(3): 445. CrossRef - Amsterdam urban canals contain novel niches for methane‐cycling microorganisms
Koen A. J. Pelsma, Michiel H. in 't Zandt, Huub J. M. Op den Camp, Mike S. M. Jetten, Joshua F. Dean, Cornelia U. Welte
Environmental Microbiology.2022; 24(1): 82. CrossRef -
Roseovarius carneus sp. nov., a novel bacterium isolated from a coastal phytoplankton bloom in Xiamen
Xueqiong Sun, Dan Lin, Yu Han, Jia Sun, Jianing Ye, Beihan Chen, Kai Tang
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef -
Tenacibaculum aquimarinum sp. nov., isolated from a marine alga and seawater
Sylvia Kristyanto, Kyeong Ryeol Kim, Jaejoon Jung, Hyung Min Kim, Keunpil Kim, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef -
Rheinheimera maricola sp. nov., isolated from seawater of the Yellow Sea
Kyung Hyun Kim, Ju Hye Baek, Ruan Wenting, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef -
Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov. sp. nov., Bombilactobacillus folatiphilus sp. nov. and Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid bacterial isolates from stingless bees Tetragonula ca
Scott A. Oliphant, Nathan S. Watson-Haigh, Krista M. Sumby, Jennifer Gardner, Scott Groom, Vladimir Jiranek
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef - Description of Polaribacter batillariae sp. nov., Polaribacter cellanae sp. nov., and Polaribacter pectinis sp. nov., novel bacteria isolated from the gut of three types of South Korean shellfish
Su-Won Jeong, Jeong Eun Han, June-Young Lee, Ji-Ho Yoo, Do-Yeon Kim, In Chul Jeong, Jee-Won Choi, Yun-Seok Jeong, Jae-Yun Lee, So-Yeon Lee, Euon Jung Tak, Hojun Sung, Hyun Sik Kim, Pil Soo Kim, Dong-Wook Hyun, Jin-Woo Bae
Journal of Microbiology.2022; 60(6): 576. CrossRef -
Neokomagataea anthophila sp. nov., an osmotolerant acetic acid bacterium isolated in Thailand and emended description of the genus Neokomagataea
Piyanat Charoenyingcharoen, Pattaraporn Yukphan, Sukunphat Malimas, Somsak Likhitrattanapisal, Somboon Tanasupawat, Yuzo Yamada
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef -
Massilia soli sp. nov., isolated from soil
Ju Hye Baek, Woonhee Baek, Wenting Ruan, Hye Su Jung, Sung Chul Lee, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef -
Parasphingorhabdus cellanae sp. nov., isolated from the gut of a Korean limpet, Cellana toreuma
Ji-Ho Yoo, Jeong Eun Han, June-Young Lee, Su-Won Jeong, Yun-Seok Jeong, Jae-Yun Lee, So-Yeon Lee, Hojun Sung, Euon Jung Tak, Hyun Sik Kim, Pil Soo Kim, Jee-Won Choi, Do-Yeon Kim, In Chul Jeong, Do-Hun Gim, Seo Min Kang, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef -
Actinotalea soli sp. nov., isolated from Kubuqi Desert soil
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International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef -
Arsenicicoccus cauae sp. nov., isolated from the blood of a pediatric gastroenteritis patient
Oh Joo Kweon, Kyung Hyun Kim, Hyung Min Kim, Shehzad Abid Khan, Ji Hun Jeong, Yong Kwan Lim, Hye Ryoun Kim, Che Ok Jeon, Mi-Kyung Lee
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef - Ramlibacter terrae sp. nov. and Ramlibacter montanisoli sp. nov., Isolated from Soil
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Journal of Microbiology and Biotechnology.2021; 31(9): 1210. CrossRef -
Ramlibacter algicola sp. nov., isolated from a freshwater alga Cryptomonas obovoidea
Hyung Min Kim, Dong Min Han, Byung Hee Chun, Hye Su Jung, Kyung Hyun Kim, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef
- Proposal of Lactococcus intestinalis Sun et al. 2024 as a Later Heterotypic Synonym of Lactococcus muris Afrizal et al. 2023
- Effects of multi-species probiotic supplementation on alcohol metabolism in rats
- Tae-Joong Lim , Sanghyun Lim , Jong Hyun Yoon , Myung Jun Chung
- J. Microbiol. 2021;59(4):417-425. Published online March 29, 2021
- DOI: https://doi.org/10.1007/s12275-021-0573-2
- 49 View
- 0 Download
- 11 Web of Science
- 12 Crossref
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Abstract
- Probiotics are known to protect against liver damage induced by the alcohol and acetaldehyde accumulation associated with alcohol intake. However, there have been few studies of the direct effect of probiotics on alcohol metabolism, and the types of probiotics that were previously analyzed were few in number. Here, we investigated the effects of 19 probiotic species on alcohol and acetaldehyde metabolism. Four probiotic species that had a relatively high tolerance to alcohol and metabolized alcohol and acetaldehyde effectively were identified: Lactobacillus gasseri CBT LGA1, Lactobacillus casei CBT LC5, Bifidobacterium lactis CBT BL3, and Bifidobacterium breve CBT BR3. These species also demonstrated high mRNA expression of alcohol and acetaldehyde dehydrogenases. Pro- AP4, a mixture of these four probiotics species and excipient, was then administered to rats for 2 weeks in advance of acute alcohol administration. The serum alcohol and acetaldehyde concentrations were significantly lower in the ProAP4-administered group than in the control and excipient groups. Thus, the administration of ProAP4, containing four probiotic species, quickly lowers blood alcohol and acetaldehyde concentrations in an alcohol and acetaldehyde dehydrogenasedependent manner. Furthermore, the serum alanine aminotransferase activity, which is indicative of liver damage, was significantly lower in the ProAP4 group than in the control group. The present findings suggest that ProAP4 may be an effective means of limiting alcohol-induced liver damage.
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Citations
Citations to this article as recorded by- Degradation effects and mechanisms of Limosilactobacillus fermentum on ethanol
Lingling Zhang, Yuhong Zhang, Shijian Liu, Jiajia Song, Huayi Suo
Food & Function.2024; 15(20): 10283. CrossRef - Reduction of Insulin Resistance by Momordica Charantia with Lactobacillus Acidophilus CBT-LA1 or Lactiplantibacillus Plantarum CBT-LP3 Improves Hepatosteatosis
Dong-Jin Kim, Ju Sung Lee, Seungwoo Kim, Sang Kyun Park, Yeo-Sang Yoon, Yougku Ryu, Myung Jun Chung
Microbiology and Biotechnology Letters.2024; 52(3): 275. CrossRef - Investigation of volatile compounds during fermentation of Elaeagnus moorcroftii Wall.ex schlecht. juice by Bifidobacterium animalis subsp. lactis HN-3 and Lacticaseibacillus paracasei YL-29
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Food Chemistry: X.2024; 21: 101171. CrossRef - Gut microbiome in alcohol use disorder: Implications for health outcomes and therapeutic strategies-a literature review
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World Journal of Methodology.2024;[Epub] CrossRef - Oral Administration of Bifidobacterium lactis Ameliorates Cognitive Deficits in Mice Intracerebroventricularly Administered Amyloid Beta via Regulation the Activation of Mitogen-activated Protein Kinases
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Su-Jin Jung, Ji-Hyun Hwang, Eun-Ock Park, Seung-Ok Lee, Yun-Jo Chung, Myung-Jun Chung, Sanghyun Lim, Tae-Joong Lim, Yunhi Ha, Byung-Hyun Park, Soo-Wan Chae
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- Degradation effects and mechanisms of Limosilactobacillus fermentum on ethanol
- Instruction of microbiome taxonomic profiling based on 16S rRNA sequencing
- Hyojung Kim , Sora Kim , Sungwon Jung
- J. Microbiol. 2020;58(3):193-205. Published online February 27, 2020
- DOI: https://doi.org/10.1007/s12275-020-9556-y
- 47 View
- 0 Download
- 23 Web of Science
- 24 Crossref
-
Abstract
- Recent studies on microbiome highlighted their importance in various environments including human, where they are involved in multiple biological contexts such as immune mechanism, drug response, and metabolism. The rapid increase of new findings in microbiome research is partly due to the technological advances in microbiome identification, including the next-generation sequencing technologies. Several applications of different next-generation sequencing platforms exist for microbiome identification, but the most popular method is using short-read sequencing technology to profile targeted regions of 16S rRNA genes of microbiome because of its low-cost and generally reliable performance of identifying overall microbiome compositions. The analysis of targeted 16S rRNA sequencing data requires multiple steps of data processing and systematic analysis, and many software tools have been proposed for such procedures. However, properly organizing and using such software tools still require certain level of expertise with computational environments. The purpose of this article is introducing the concept of computational analysis of 16S rRNA sequencing data to microbiologists and providing easy-to-follow and step-by-step instructions of using recent software tools of microbiome analysis. This instruction may be used as a quick guideline for general next-generation sequencing-based microbiome studies or a template of constructing own software pipelines for customized analysis.
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Citations
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