Characterization of bacterial diversity associated with deep sea ferromanganese nodules from the South China Sea

De-Chao Zhang; Yan-Xia Liu; Xin-Zheng Li

doi:10.1007/s12275-015-5217-y

Articles

Page Path: HOME > J. Microbiol > Volume 53(9); 2015 > Article

Research Support, Non-U.S. Gov't
Characterization of bacterial diversity associated with deep sea ferromanganese nodules from the South China Sea: De-Chao Zhang , Yan-Xia Liu , Xin-Zheng Li; Journal of Microbiology 2015;53(9):598-605.
DOI: https://doi.org/10.1007/s12275-015-5217-y
Published online: August 27, 2015

Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, P. R. ChinaInstitute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, P. R. China

Corresponding author: Xin-Zheng Li , Tel: .,

Received: 28 April 2015 • Revised: 24 June 2015 • Accepted: 9 July 2015

prev next

68 Views
0 Download
15 Crossref
14 Scopus

Full Article

Abstract

Deep sea ferromanganese (FeMn) nodules contain metallic mineral resources and have great economic potential. In this study, a combination of culture-dependent and culture-independent (16S rRNA genes clone library and pyrosequencing)
methods
was used to investigate the bacterial diversity in FeMn nodules from Jiaolong Seamount, the South China Sea. Eleven bacterial strains including some moderate thermophiles were isolated. The majority of strains belonged to the phylum Proteobacteria; one isolate belonged to the phylum Firmicutes. A total of 259 near full-length bacterial 16S rRNA gene sequences in a clone library and 67,079 valid reads obtained using pyrosequencing indicated that members of the Gammaproteobacteria dominated, with the most abundant bacterial genera being Pseudomonas and Alteromonas. Sequence analysis indicated the presence of many organisms whose closest relatives are known manganese oxidizers, iron reducers, hydrogen-oxidizing bacteria and methylotrophs. This is the first reported investigation of bacterial diversity associated with deep sea FeMn nodules from the South China Sea.

Keywords: deep sea;ferromanganese;bacterial diversity

Figure & Data

References

Citations

Citations to this article as recorded by

Advances in Research on Bacterial Oxidation of Mn(II): A Visualized Bibliometric Analysis Based on CiteSpace
Wentao Mo, Hang Wang, Jianghan Wang, Yue Wang, Yunfei Liu, Yi Luo, Minghui He, Shuang Cheng, Huiting Mei, Jin He, Jianmei Su
Microorganisms.2024; 12(8): 1611. CrossRef
Spatial patterns of microbial diversity in Fe-Mn deposits and associated sediments in the Atlantic and Pacific oceans
Natascha Menezes Bergo, Adriana Torres-Ballesteros, Camila Negrão Signori, Mariana Benites, Luigi Jovane, Bramley J. Murton, Ulisses Nunes da Rocha, Vivian Helena Pellizari
Science of The Total Environment.2022; 837: 155792. CrossRef
Spatial Variability of Abyssal Nitrifying Microbes in the North-Eastern Clarion-Clipperton Zone
Anita L. Hollingsworth, Daniel O. B. Jones, C. Robert Young
Frontiers in Marine Science.2021;[Epub] CrossRef
Bacterial and Fungal Diversity in Sediment and Water Column From the Abyssal Regions of the Indian Ocean
Natasha Maria Barnes, Samir R. Damare, Belle Damodara Shenoy
Frontiers in Marine Science.2021;[Epub] CrossRef
Methyl‐compounds driven benthic carbon cycling in the sulfate‐reducing sediments of South China Sea
Lei Xu, Guang‐Chao Zhuang, Andrew Montgomery, Qianyong Liang, Samantha B. Joye, Fengping Wang
Environmental Microbiology.2021; 23(2): 641. CrossRef
Apparent oxygen utilization rates based on tritium-helium dating in the South China Sea: Implications for export production
Tengxiang Xie, Robert Newton, Peter Schlosser, Liguo Guo, Lifang Wang, Tao Huang, Yan Li, Zhe Wang, Minhan Dai
Deep Sea Research Part I: Oceanographic Research Papers.2021; 177: 103620. CrossRef
Bacterial and Archaeal Communities in Polymetallic Nodules, Sediments, and Bottom Waters of the Abyssal Clarion-Clipperton Zone: Emerging Patterns and Future Monitoring Considerations
Emma K. Wear, Matthew J. Church, Beth N. Orcutt, Christine N. Shulse, Markus V. Lindh, Craig R. Smith
Frontiers in Marine Science.2021;[Epub] CrossRef
An interdependent relationship between microbial ecosystems and ferromanganese nodules from the Western Pacific Ocean
Xiao-Dong Jiang, Jun-Li Gong, Jiang-Bo Ren, Qing-Song Liu, Jian Zhang, Yu-Min Chou
Sedimentary Geology.2020; 398: 105588. CrossRef
Biogeochemistry, microbial activity, and diversity in surface and subsurface deep‐sea sediments of South China Sea
Guang‐Chao Zhuang, Lei Xu, Qianyong Liang, Xibei Fan, Zhen Xia, Samantha B. Joye, Fengping Wang
Limnology and Oceanography.2019; 64(5): 2252. CrossRef
Deep-sea mining on the Rio Grande Rise (Southwestern Atlantic): A review on environmental baseline, ecosystem services and potential impacts
Francesc Montserrat, Maila Guilhon, Paulo Vinicius Ferraz Corrêa, Natascha Menezes Bergo, Camila Negrão Signori, Pedro Marone Tura, Mascimiliano de los Santos Maly, Denise Moura, Luigi Jovane, Vivian Pellizari, Paulo Yukio Gomes Sumida, Frederico Pereira
Deep Sea Research Part I: Oceanographic Research Papers.2019; 145: 31. CrossRef
Heavy-Metal-Resistant Microorganisms in Deep-Sea Sediments Disturbed by Mining Activity: An Application Toward the Development of Experimental in vitro Systems
Benjamin Gillard, Damianos Chatzievangelou, Laurenz Thomsen, Matthias S. Ullrich
Frontiers in Marine Science.2019;[Epub] CrossRef
Microbial Community of Umkhei Thermal Lake (Baikal Rift Zone) in the Groundwater Discharge Zone
E. V. Lavrentyeva, T. G. Banzaraktsaeva, A. A. Radnagurueva, S. P. Buryukhaev, V. B. Dambaev, O. A. Baturina, L. P. Kozyreva, D. D. Barkhutova
Contemporary Problems of Ecology.2019; 12(6): 584. CrossRef
Biogenic mineralization in the ferromanganese nodules and crusts from the South China Sea
Xiao-Dong Jiang, Xiao-Ming Sun, Yao Guan
Journal of Asian Earth Sciences.2019; 171: 46. CrossRef
Macro and Microelements Drive Diversity and Composition of Prokaryotic and Fungal Communities in Hypersaline Sediments and Saline–Alkaline Soils
Kaihui Liu, Xiaowei Ding, Xiaofei Tang, Jianjun Wang, Wenjun Li, Qingyun Yan, Zhenghua Liu
Frontiers in Microbiology.2018;[Epub] CrossRef
Rare earth elements and yttrium in ferromanganese deposits from the South China Sea: distribution, composition and resource considerations
Yi Zhong, Zhong Chen, Francisco Javier Gonzalez, Xufeng Zheng, Gang Li, Yun Luo, Aibin Mo, Antao Xu, Shuhong Wang
Acta Oceanologica Sinica.2018; 37(7): 41. CrossRef

Cite this Article

Cite this Article: export Copy Download Format; Close

Download Citation

Download a citation file in RIS format that can be imported by all major citation management software, including EndNote, ProCite, RefWorks, and Reference Manager.

Format:

RIS — For EndNote, ProCite, RefWorks, and most other reference management software
BibTeX — For JabRef, BibDesk, and other BibTeX-specific software

Include:

Citation for the content below
Citation and abstract for the content below

Characterization of bacterial diversity associated with deep sea ferromanganese nodules from the South China Sea

J. Microbiol. 2015;53(9):598-605. Published online August 27, 2015

DOI: https://doi.org/10.1007/s12275-015-5217-y

Related articles