- Volume 51(6); December 2013
-
Reviews
- MINIREVIEW] Overview: Replication of Porcine Reproductive and Respiratory Syndrome Virus
-
Sang-Im Yun , Young-Min Lee
-
J. Microbiol. 2013;51(6):711-723. Published online December 19, 2013
-
DOI: https://doi.org/10.1007/s12275-013-3431-z
-
-
40
View
-
0
Download
-
47
Crossref
-
Abstract
-
Porcine reproductive and respiratory syndrome virus (PRRSV),
an arterivirus that causes significant losses in the pig industry,
is one of the most important animal pathogens of global
significance. Since the discovery of the virus, significant progress
has been made in understanding its epidemiology and
transmission, but no adequate control measures are yet available
to eliminate infection with this pathogen. The genome
replication of PRRSV is required to reproduce, within a few
hours of infection, the millions of progeny virions that establish,
disseminate, and maintain infection. Replication of the
viral RNA genome is a multistep process involving a replication
complex that is formed not only from components
of viral and cellular origin but also from the viral genomic
RNA template; this replication complex is embedded within
particular virus-induced membrane vesicles. PRRSV RNA
replication is directed by at least 14 replicase proteins that
have both common enzymatic activities, including viral RNA
polymerase, and also unusual and poorly understood RNAprocessing
functions. In this review, we summarize our
current understanding of PRRSV replication, which is important
for developing a successful strategy for the prevention
and control of this pathogen.
-
Citations
Citations to this article as recorded by

- Mechanism of PRRSV infection and antiviral role of polyphenols
Fructueux Modeste Amona, Yipeng Pang, Xingyu Gong, Yanhong Wang, Xingtang Fang, Chunlei Zhang, Xi Chen
Virulence.2024;[Epub] CrossRef - Unveiling Shared Immune Responses in Porcine Alveolar Macrophages during ASFV and PRRSV Infection Using Single-Cell RNA-seq
Bo Jiang, Lu Li, Yu Wu, Xiaoying Wang, Ning Gao, Zhichao Xu, Chunhe Guo, Sheng He, Guihong Zhang, Yaosheng Chen, Xiaohong Liu, Zhengcao Li
Microorganisms.2024; 12(3): 563. CrossRef - A Comprehensive Review on Porcine Reproductive and Respiratory Syndrome Virus with Emphasis on Immunity
Jorian Fiers, Ann Brigitte Cay, Dominiek Maes, Marylène Tignon
Vaccines.2024; 12(8): 942. CrossRef - Development of a Real-Time TaqMan RT-PCR Assay for the Detection of NADC34-like Porcine Reproductive and Respiratory Syndrome Virus
Teng Tu, Maonan Pang, Dike Jiang, You Zhou, Xulong Wu, Xueping Yao, Yan Luo, Zexiao Yang, Meishen Ren, Aiping Lu, Ge Zhang, Yuanyuan Yu, Yin Wang
Veterinary Sciences.2023; 10(4): 279. CrossRef - Research Progress of Porcine Reproductive and Respiratory Syndrome Virus NSP2 Protein
Benjin Liu, Lingzhi Luo, Ziqi Shi, Houbin Ju, Lingxue Yu, Guoxin Li, Jin Cui
Viruses.2023; 15(12): 2310. CrossRef - Development of Polycistronic Baculovirus Surface Display Vectors to Simultaneously Express Viral Proteins of Porcine Reproductive and Respiratory Syndrome and Analysis of Their Immunogenicity in Swine
Chao-Yu Hsu, Yun Jang, Wei-Ru Huang, Chi-Young Wang, Hsiao-Wei Wen, Pei-Chien Tsai, Cheng-Yao Yang, Muhammad Munir, Hung-Jen Liu
Vaccines.2023; 11(11): 1666. CrossRef - Bergamottin Inhibits PRRSV Replication by Blocking Viral Non-Structural Proteins Expression and Viral RNA Synthesis
Zhenbang Zhu, Yuqian Xu, Lulu Chen, Meng Zhang, Xiangdong Li
Viruses.2023; 15(6): 1367. CrossRef - Pathogenicity Studies of NADC34-like Porcine Reproductive and Respiratory Syndrome Virus LNSY-GY and NADC30-like Porcine Reproductive and Respiratory Syndrome Virus GXGG-8011 in Piglets
Hechao Zhu, Liuqing Wei, Xiangzu Liu, Shudan Liu, Huanchun Chen, Pin Chen, Xiangmin Li, Ping Qian
Viruses.2023; 15(11): 2247. CrossRef - Growth kinetics of an Indian isolate of highly pathogenic porcine reproductive and respiratory syndrome virus in MARC-145 cells
Subbiah Kombiah, Dhanapal Senthilkumar, Manoj Kumar, Panickan Sivasankar, Vijendra P. Singh, Katherukamem Rajukumar
VirusDisease.2022; 33(2): 208. CrossRef - Host Cells Actively Resist Porcine Reproductive and Respiratory Syndrome Virus Infection via the IRF8-MicroRNA-10a-SRP14 Regulatory Pathway
Zifang Zheng, Xiali Fu, Xue Ling, Huanhuan Sun, Yang Li, Zhiqian Ma, Bingjie Wei, Haixue Zheng, Shuqi Xiao, Bryan R.G. Williams
Journal of Virology.2022;[Epub] CrossRef - Genome-wide CRISPR/Cas9 screen identifies host factors important for porcine reproductive and respiratory syndrome virus replication
Jinhe Jiang, Yumei Sun, Yunlong Wang, Ahmed Sabek, Aishao Shangguan, Kai Wang, Shuhong Zhao, Guoliang Li, Ao Zhou, Shujun Zhang
Virus Research.2022; 314: 198738. CrossRef - cGAS Restricts PRRSV Replication by Sensing the mtDNA to Increase the cGAMP Activity
Xiao-Na Liu, Li-Wei Li, Fei Gao, Yi-Feng Jiang, Wan-Zhe Yuan, Guo-Xin Li, Ling-Xue Yu, Yan-Jun Zhou, Guang-Zhi Tong, Kuan Zhao
Frontiers in Immunology.2022;[Epub] CrossRef - Porcine reproductive and respiratory syndrome virus genetic variability a management and diagnostic dilemma
Jessica Risser, Matthew Ackerman, Robert Evelsizer, Stephen Wu, Byungjoon Kwon, James Mark Hammer
Virology Journal.2021;[Epub] CrossRef - Activation of Fc gamma receptor IIb up-regulates the production of interferon-alpha and interferon-gamma in porcine alveolar macrophages during PRRSV infection
Liujun Zhang, Yuhao Xia, Wen Li, Yangyang Sun, Linghao Kong, Pengli Xu, Pingan Xia, Junming Yue
Developmental & Comparative Immunology.2020; 109: 103696. CrossRef - Screening of PRRSV- and ASFV-encoded proteins involved in the inflammatory response using a porcine iGLuc reporter
Jie Song, Kang Li, Ting Li, Gaihong Zhao, Shijun Zhou, Huang Li, Jiangnan Li, Changjiang Weng
Journal of Virological Methods.2020; 285: 113958. CrossRef - Porcine reproductive and respiratory syndrome virus Nsp4 cleaves ZAP to antagonize its antiviral activity
Yongxiang Zhao, Zhongbao Song, Juan Bai, Xuewei Liu, Hans Nauwynck, Ping Jiang
Veterinary Microbiology.2020; 250: 108863. CrossRef - Early infection of Streptococcus suis serotype 2 increases the virulence of highly pathogenic porcine reproductive and respiratory syndrome MLV-like virus in pigs
Ying-Feng Sun, Xuan Jiang, Ao Zhang, Ji-Fei Ma, Xiao-Xue Yu, Liu-An Li, Hai Yu
Research in Veterinary Science.2020; 130: 68. CrossRef - Simultaneous detection of classical PRRSV, highly pathogenic PRRSV and NADC30-like PRRSV by TaqMan probe real-time PCR
Wenbin Qiu, Kai Meng, Yanyan Liu, Yuyu Zhang, Zhao Wang, Zhi Chen, Jie Yang, Wenbo Sun, Lihui Guo, Sufang Ren, Lei Chen, Guiwen Yang, Fan Zhang, Jianli Shi, Jun Li, Yijun Du, Jiang Yu, Jiaqiang Wu
Journal of Virological Methods.2020; 282: 113774. CrossRef - Porcine reproductive and respiratory syndrome virus infection promotes C1QBP secretion to enhance inflammatory responses
Yang Li, Ying Wei, Wanjun Hao, Wenkai Zhao, Yanrong Zhou, Dang Wang, Shaobo Xiao, Liurong Fang
Veterinary Microbiology.2020; 241: 108563. CrossRef - GSH-ZnS Nanoparticles Exhibit High-Efficiency and Broad-Spectrum Antiviral Activities via Multistep Inhibition Mechanisms
Yanrong Zhou, Ting Tong, Xiaohan Jiang, Liurong Fang, Yuan Wu, Jiangong Liang, Shaobo Xiao
ACS Applied Bio Materials.2020; 3(8): 4809. CrossRef - A Field Recombinant Strain Derived from Two Type 1 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV-1) Modified Live Vaccines Shows Increased Viremia and Transmission in SPF Pigs
Julie Eclercy, Patricia Renson, Arnaud Lebret, Edouard Hirchaud, Valérie Normand, Mathieu Andraud, Frédéric Paboeuf, Yannick Blanchard, Nicolas Rose, Olivier Bourry
Viruses.2019; 11(3): 296. CrossRef - Involvement of PRRSV NSP3 and NSP5 in the autophagy process
Wei Zhang, Keren Chen, Yang Guo, Yaosheng Chen, Xiaohong Liu
Virology Journal.2019;[Epub] CrossRef - Chlorine dioxide inhibits the replication of porcine reproductive and respiratory syndrome virus by blocking viral attachment
Zhenbang Zhu, Yang Guo, Piao Yu, Xiaoying Wang, Xiaoxiao Zhang, Wenjuan Dong, Xiaohong Liu, Chunhe Guo
Infection, Genetics and Evolution.2019; 67: 78. CrossRef - Key Gaps in the Knowledge of the Porcine Respiratory Reproductive Syndrome Virus (PRRSV)
Sergio Montaner-Tarbes, Hernando A. del Portillo, María Montoya, Lorenzo Fraile
Frontiers in Veterinary Science.2019;[Epub] CrossRef - DDX5 RNA Helicases: Emerging Roles in Viral Infection
Wenyu Cheng, Guohua Chen, Huaijie Jia, Xiaobing He, Zhizhong Jing
International Journal of Molecular Sciences.2018; 19(4): 1122. CrossRef - Spatiotemporal immunofluorescent evaluation of porcine reproductive and respiratory syndrome virus transmission across the maternal-fetal interface
M Suleman, P Novakovic, C M Malgarin, S E Detmer, J C S Harding, D J MacPhee
Pathogens and Disease.2018;[Epub] CrossRef - Curcumin is a promising inhibitor of genotype 2 porcine reproductive and respiratory syndrome virus infection
Taofeng Du, Yunpeng Shi, Shuqi Xiao, Na Li, Qin Zhao, Angke Zhang, Yuchen Nan, Yang Mu, Yani Sun, Chunyan Wu, Hongtao Zhang, En-Min Zhou
BMC Veterinary Research.2017;[Epub] CrossRef - Porcine reproductive and respiratory syndrome virus (PRRSV) up-regulates IL-8 expression through TAK-1/JNK/AP-1 pathways
Yihao Liu, Yinping Du, Honglei Wang, Li Du, Wen-hai Feng
Virology.2017; 506: 64. CrossRef - Cellular DEAD-box RNA helicase 18 (DDX18) Promotes the PRRSV Replication via Interaction with Virus nsp2 and nsp10
Huan Jin, Lei Zhou, Xinna Ge, Han Zhang, Ruimin Zhang, Cong Wang, Li Wang, Zhibang Zhang, Hanchun Yang, Xin Guo
Virus Research.2017; 238: 204. CrossRef - ORF1a of highly pathogenic PRRS attenuated vaccine virus plays a key role in neutralizing antibody induction in piglets and virus neutralization in vitro
Chaoliang Leng, Wuchao Zhang, Hongliang Zhang, Yunchao Kan, Lunguang Yao, Hongyue Zhai, Mingliang Li, Zhen Li, Chunxiao Liu, Tongqing An, Jinmei Peng, Qian Wang, Yumin Leng, Xuehui Cai, Zhijun Tian, Guangzhi Tong
Virology Journal.2017;[Epub] CrossRef - Secondary Haemophilus parasuis infection enhances highly pathogenic porcine reproductive and respiratory syndrome virus (HP-PRRSV) infection-mediated inflammatory responses
Jiangnan Li, Shengnan Wang, Changyao Li, Chunlai Wang, Yonggang Liu, Gang Wang, Xijun He, Liang Hu, Yuanyuan Liu, Mengmeng Cui, Caihong Bi, Zengyu Shao, Xiaojie Wang, Tao Xiong, Xuehui Cai, Li Huang, Changjiang Weng
Veterinary Microbiology.2017; 204: 35. CrossRef - Identification of a linear B-cell epitope on non-structural protein 12 of porcine reproductive and respiratory syndrome virus, using a monoclonal antibody
Caihong Bi, Zengyu Shao, Yuanfeng Zhang, Liang Hu, Jiangnan Li, Li Huang, Changjiang Weng
Archives of Virology.2017; 162(8): 2239. CrossRef - Pyrithione inhibits porcine reproductive and respiratory syndrome virus replication through interfering with NF-κB and heparanase
Chunhe Guo, Zhenbang Zhu, Xiaoying Wang, Yaosheng Chen, Xiaohong Liu
Veterinary Microbiology.2017; 201: 231. CrossRef - Influence of the amino acid residues at 70 in M protein of porcine reproductive and respiratory syndrome virus on viral neutralization susceptibility to the serum antibody
Baochao Fan, Xing Liu, Juan Bai, Tingjie Zhang, Qiaoya Zhang, Ping Jiang
Virology Journal.2016;[Epub] CrossRef - The Attenuation Phenotype of a Ribavirin-Resistant Porcine Reproductive and Respiratory Syndrome Virus Is Maintained during Sequential Passages in Pigs
Amina Khatun, Nadeem Shabir, Byoung-Joo Seo, Bum-Seok Kim, Kyoung-Jin Yoon, Won-Il Kim, S. Perlman
Journal of Virology.2016; 90(9): 4454. CrossRef - Matrine displayed antiviral activity in porcine alveolar macrophages co-infected by porcine reproductive and respiratory syndrome virus and porcine circovirus type 2
Na Sun, Panpan Sun, Haipeng Lv, Yaogui Sun, Jianhua Guo, Zhirui Wang, Tiantian Luo, Shaoyu Wang, Hongquan Li
Scientific Reports.2016;[Epub] CrossRef - Monkey Viperin Restricts Porcine Reproductive and Respiratory Syndrome Virus Replication
Jianyu Fang, Haiyan Wang, Juan Bai, Qiaoya Zhang, Yufeng Li, Fei Liu, Ping Jiang, Kui Li
PLOS ONE.2016; 11(5): e0156513. CrossRef - Preliminary Study on Prevalence, Risk Factor and Genetic Homogeneity of Porcine Reproductive and Respiratory Syndrome Virus in Registered Pig Farms in Heilongjiang, China
J. Wang, H. Wen, S. Wang, W. Sun, N. Shen, Z. Liu, Y. Liu, Y. Liu, C. Jiang, G. Sun, F. Goutard, X. Cai
Transboundary and Emerging Diseases.2016; 63(5): e369. CrossRef - PRRSV structure, replication and recombination: Origin of phenotype and genotype diversity
Matthew A. Kappes, Kay S. Faaberg
Virology.2015; 479-480: 475. CrossRef - Generation of porcine reproductive and respiratory syndrome virus by in vitro assembly of viral genomic cDNA fragments
Maman Suhardiman, Jarin Kramyu, Jaraspim Narkpuk, Anan Jongkaewwattana, Nanchaya Wanasen
Virus Research.2015; 195: 1. CrossRef - Regulation and evasion of antiviral immune responses by porcine reproductive and respiratory syndrome virus
Chen Huang, Qiong Zhang, Wen-hai Feng
Virus Research.2015; 202: 101. CrossRef - Lipid rafts both in cellular membrane and viral envelope are critical for PRRSV efficient infection
Qian Yang, Qiong Zhang, Jun Tang, Wen-hai Feng
Virology.2015; 484: 170. CrossRef - DRACO inhibits porcine reproductive and respiratory syndrome virus replication in vitro
Chunhe Guo, Luxi Chen, Delin Mo, Yaosheng Chen, Xiaohong Liu
Archives of Virology.2015; 160(5): 1239. CrossRef - DDX19A Senses Viral RNA and Mediates NLRP3-Dependent Inflammasome Activation
Jiangnan Li, Liang Hu, Yuanyuan Liu, Li Huang, Yang Mu, Xuehui Cai, Changjiang Weng
The Journal of Immunology.2015; 195(12): 5732. CrossRef - Effect of Nonstructural Protein 2 Hypervariable Regions in the Replication of Porcine Reproductive and Respiratory Syndrome Virus in Marc-145 Cells
Ying Liu, Feng-Xue Wang, Yong-Jun Wen, Zhen-Guang Li, Xing Liu, Na Sun, Yong Yang, Shu-Qin Zhang, Hong-Wei Zhu, Shi-Peng Cheng, Hua Wu
Intervirology.2015; 58(5): 288. CrossRef - Different clinical, virological, serological and tissue tropism outcomes of two new and one old Belgian type 1 subtype 1 porcine reproductive and respiratory virus (PRRSV) isolates
Ilias S Frydas, Ivan Trus, Lise K Kvisgaard, Caroline Bonckaert, Vishwanatha RAP Reddy, Yewei Li, Lars E Larsen, Hans J Nauwynck
Veterinary Research.2015;[Epub] CrossRef - Threonine and tryptophan supplementation enhance porcine respiratory and reproductive syndrome (PRRS) vaccine‐induced immune responses of growing pigs
Shengyu Xu, Yingfei Zhao, Jie Shen, Yan Lin, Zhengfeng Fang, Lianqiang Che, De Wu
Animal Science Journal.2015; 86(3): 294. CrossRef
- MINIREVIEW] Shiga Toxins Expressed by Human Pathogenic Bacteria Induce Immune Responses in Host Cells
-
Moo-Seung Lee , Myung Hee Kim , Vernon L. Tesh
-
J. Microbiol. 2013;51(6):724-730. Published online December 19, 2013
-
DOI: https://doi.org/10.1007/s12275-013-3429-6
-
-
50
View
-
0
Download
-
21
Crossref
-
Abstract
-
Shiga toxins are a family of genetically and structurally related
toxins that are the primary virulence factors produced
by the bacterial pathogens Shigella dysenteriae serotype 1
and certain Escherichia coli strains. The toxins are multifunctional
proteins inducing protein biosynthesis inhibition,
ribotoxic and ER stress responses, apoptosis, autophagy, and
inflammatory cytokine and chemokine production. The regulated
induction of inflammatory responses is key to minimizing
damage upon injury or pathogen-mediated infections,
requiring the concerted activation of multiple signaling pathways
to control cytokine/chemokine expression. Activation
of host cell signaling cascades is essential for Shiga toxinmediated
proinflammatory responses and the contribution
of the toxins to virulence. Many studies have been reported
defining the inflammatory response to Shiga toxins in vivo
and in vitro, including production and secretion of tumor
necrosis factor alpha (TNF-α), interleukin-1β (IL-1β), macrophage
inflammatory protein-1α/β (MIP-1α/β), macrophage
chemoattractant monocyte chemoattractant protein
1 (MCP-1), interleukin 8 (IL-8), interleukin 6 (IL-6), and
Groβ. These cytokines and chemokines may contribute to
damage in the colon and development of life threatening
conditions such as acute renal failure (hemolytic uremic
syndrome) and neurological abnormalities. In this review,
we summarize recent findings in Shiga toxin-mediated inflammatory
responses by different types of cells in vitro and
in animal models. Signaling pathways involved in the inflammatory
responses are briefly reviewed.
-
Citations
Citations to this article as recorded by

- Involvement of aquaporins in Shiga toxin-induced swelling and water transport dysfunction in human renal microvascular endothelial cells
Fernando D. Gomez, Julieta Reppetti, Romina S. Alvarez, Daniel C. Girón Reyes, Flavia Sacerdoti, Alejandro Balestracci, Alicia E. Damiano, Nora A. Martínez, Gisela Di Giusto, María M. Amaral
Biochimica et Biophysica Acta (BBA) - Molecular Cell Research.2025; 1872(1): 119866. CrossRef - Distribution characteristics of antibiotic resistance in direct-eating food and analysis of Citrobacter freundii genome and pathogenicity
Qing Wang, Xuening Wang, Shaojing Sun, Litao Wang, Yan Sun, Xinyan Guo, Na Wang, Bin Chen
World Journal of Engineering.2024; 21(6): 1095. CrossRef - Significance of Pulmonary Endothelial Injury and the Role of Cyclooxygenase-2 and Prostanoid Signaling
Rosa Nickl, Sandra Hauser, Jens Pietzsch, Torsten Richter
Bioengineering.2023; 10(1): 117. CrossRef - The predominance of Shiga toxin-producing E. coli in the Southeast Coast of India
Kannan Kamala, Shanmugam Rajeshkumar, Pitchiah Sivaperumal
Marine Pollution Bulletin.2022; 174: 113188. CrossRef - Gene expression profile and injury sites in mice treated with Shiga toxin 2 and lipopolysaccharide as a Shiga toxin-associated hemolytic uremic syndrome model
Yohei Kume, Hayato Go, Ryo Maeda, Kazuhide Suyama, Tsutomu Mori, Yukihiko Kawasaki, Koichi Hashimoto, Mitsuaki Hosoya
Physiological Genomics.2022; 54(5): 153. CrossRef - SARS-CoV-2 and Emerging Foodborne Pathogens: Intriguing Commonalities and Obvious Differences
Ahmed G. Abdelhamid, Julia N. Faraone, John P. Evans, Shan-Lu Liu, Ahmed E. Yousef
Pathogens.2022; 11(8): 837. CrossRef - Combined Action of Shiga Toxin Type 2 and Subtilase Cytotoxin in the Pathogenesis of Hemolytic Uremic Syndrome
Romina S. Álvarez, Fernando D. Gómez, Elsa Zotta, Adrienne W. Paton, James C. Paton, Cristina Ibarra, Flavia Sacerdoti, María M. Amaral
Toxins.2021; 13(8): 536. CrossRef - Shiga toxin remodels the intestinal epithelial transcriptional response to Enterohemorrhagic Escherichia coli
Alyson R. Warr, Carole J. Kuehl, Matthew K. Waldor, Igor Eric Brodsky
PLOS Pathogens.2021; 17(2): e1009290. CrossRef - Comparative Transcriptomics of Shiga Toxin-Producing and Commensal Escherichia coli and Cytokine Responses in Colonic Epithelial Cell Culture Infections
Lisa M. Harrison, David W. Lacher, Mark K. Mammel, Susan R. Leonard
Frontiers in Cellular and Infection Microbiology.2020;[Epub] CrossRef - Lactobacillus acidophilus attenuates toxin production by Vibrio cholerae and shigella dysenteriae following intestinal epithelial cells infection
Shabnam Zeighamy Alamdary, Bita Bakhshi
Microbial Pathogenesis.2020; 149: 104543. CrossRef - Roles of Shiga Toxins in Immunopathology
Moo-Seung Lee, Vernon L. Tesh
Toxins.2019; 11(4): 212. CrossRef - Nucleolar fibrillarin is an evolutionarily conserved regulator of bacterial pathogen resistance
Varnesh Tiku, Chun Kew, Parul Mehrotra, Raja Ganesan, Nirmal Robinson, Adam Antebi
Nature Communications.2018;[Epub] CrossRef - Simulation Study of cDNA Dataset to Investigate Possible Association of Differentially Expressed Genes of Human THP1-Monocytic Cells in Cancer Progression Affected by Bacterial Shiga Toxins
Syed A. Muhammad, Jinlei Guo, Thanh M. Nguyen, Xiaogang Wu, Baogang Bai, X. Frank Yang, Jake Y. Chen
Frontiers in Microbiology.2018;[Epub] CrossRef - Anti-inflammatory agents reduce microglial response, demyelinating process and neuronal toxin uptake in a model of encephalopathy produced by Shiga Toxin 2
Alipio Pinto, Clara Berdasco, David Arenas-Mosquera, Adriana Cangelosi, Patricia A. Geoghegan, Myriam C. Nuñez, Jorge Goldstein
International Journal of Medical Microbiology.2018; 308(8): 1036. CrossRef - Shiga Toxins as Multi-Functional Proteins: Induction of Host Cellular Stress Responses, Role in Pathogenesis and Therapeutic Applications
Moo-Seung Lee, Sunwoo Koo, Dae Jeong, Vernon Tesh
Toxins.2016; 8(3): 77. CrossRef - Shiga Toxins Activate the NLRP3 Inflammasome Pathway To Promote Both Production of the Proinflammatory Cytokine Interleukin-1β and Apoptotic Cell Death
Moo-Seung Lee, Haenaem Kwon, Eun-Young Lee, Dong-Jae Kim, Jong-Hwan Park, Vernon L. Tesh, Tae-Kwang Oh, Myung Hee Kim, B. A. McCormick
Infection and Immunity.2016; 84(1): 172. CrossRef - Angiotensin-(1–7) protects from brain damage induced by shiga toxin 2-producing enterohemorrhagicEscherichia coli
Jorge Goldstein, Tomás R. Carden, María J. Perez, Carlos A. Taira, Christian Höcht, Mariela M. Gironacci
American Journal of Physiology-Regulatory, Integrative and Comparative Physiology.2016; 311(6): R1173. CrossRef - Bacteria, the endoplasmic reticulum and the unfolded protein response: friends or foes?
Jean Celli, Renée M. Tsolis
Nature Reviews Microbiology.2015; 13(2): 71. CrossRef - The roles of the virulence factor IpaB in Shigella spp. in the escape from immune cells and invasion of epithelial cells
Shih-Chun Yang, Chi-Feng Hung, Ibrahim A. Aljuffali, Jia-You Fang
Microbiological Research.2015; 181: 43. CrossRef - Update on molecular epidemiology of Shigella infection
Ila F.N. Lima, Alexandre Havt, Aldo A.M. Lima
Current Opinion in Gastroenterology.2015; 31(1): 30. CrossRef - Shiga Toxin (Stx) Classification, Structure, and Function
Angela R. Melton-Celsa, Vanessa Sperandio, Carolyn J. Hovde
Microbiology Spectrum.2014;[Epub] CrossRef
Research Support, Non-U.S. Gov'ts
- Niabella terrae sp. nov. Isolated from Greenhouse Soil
-
Jae-Hyung Ahn , Eun-Hye Jo , Byung-Yong Kim , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
-
J. Microbiol. 2013;51(6):731-735. Published online December 19, 2013
-
DOI: https://doi.org/10.1007/s12275-013-3507-9
-
-
49
View
-
0
Download
-
6
Crossref
-
Abstract
-
An orange-colored bacterial strain, ICM 1-15T, was isolated
from greenhouse soil. The 16S rRNA gene sequence of this
strain showed the highest sequence similarity with Niabella
ginsengisoli GR10-1T (95.2%) and Niabella yanshanensis
CCBAU 05354T (95.0%) among the type strains. The strain
ICM 1-15T was a strictly aerobic, Gram-negative, non-sporeforming,
non-motile, flexirubin pigment-producing, short
rod-shaped bacterium. The strain grew at 15–35°C (optimum,
25°C), at a pH of 5.0–8.5 (optimum, pH 6.5), and in
the presence of 0–3% NaCl (optimum, 1%). The DNA G+C
content of strain ICM 1-15T was 43.6 mol%. It contained
MK-7 as the major isoprenoid quinone and iso-C15:0 (38.9%),
iso-C15:1 G (20.3%), and iso-C17:0 3-OH (12.9%) as the major
fatty acids. On the basis of evidence from our polyphasic
taxonomic study, we concluded that strain ICM 1-15T should
be classified within a novel species of the genus Niabella,
for which the name Niabella terrae sp. nov. is proposed.
The type strain is ICM 1-15T (=KACC 17443T =JCM 19502T).
-
Citations
Citations to this article as recorded by

- Niabella digestorum sp. nov., a High Cell-Surface Hydrophobic Bacterium Isolated from Waste Digestion System
Ling Zhang, Chuansheng Geng, Xingjuan Chen, Letian Chen, Tongchu Deng, Meiying Xu
Current Microbiology.2024;[Epub] CrossRef -
Niabella defluvii sp. nov., isolated from influent water of a wastewater treatment plant
Jihyeon Min, Yongjun Son, Yerim Park, Woojun Park
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Niabella beijingensis sp. nov. and Thermomonas beijingensis sp. nov., two bacteria from constructed wetland
Sheng-Zhi Guo, Tong Wu, Hai-Zhen Zhu, Lei Yan, Zhi-Pei Liu, De-Feng Li, Cheng-Ying Jiang, Shuang-Jiang Liu, Xi-Hui Shen
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Niabella hibiscisoli sp. nov., isolated from soil of a Rose of Sharon garden
Hien T. T. Ngo, Huan Trinh, Zheng-Fei Yan, Gabriela Moya, MooChang Kook, Tae-Hoo Yi
International Journal of Systematic and Evolutionary Microbiology.2017; 67(4): 784. CrossRef - Niabella ginsenosidivorans sp. nov., isolated from compost
Kwon-Jung Yi, Wan-Taek Im, Dong-Woon Kim, Qing Mei Liu, Soo-Ki Kim
Journal of Microbiology.2015; 53(11): 762. CrossRef - Effects of fluoroquinolone antibiotics on reactor performance and microbial community structure of a membrane bioreactor
Fangang Meng, Guihe Gao, Tao-Tao Yang, Xi Chen, Yuanqing Chao, Guangshui Na, Linke Ge, Li-Nan Huang
Chemical Engineering Journal.2015; 280: 448. CrossRef
- Aestuariibaculum scopimerae sp. nov., Isolated from the Globular Ghost Crab, Scopimera globosa
-
Jae-Bong Lee , Byung-Chun Kim , Hyangmi Kim , Kyung Sook Bae , Jae-Hyeong Yang , Young-Yull Chun , Seong-Joon Park , Doo-Sang Park
-
J. Microbiol. 2013;51(6):736-740. Published online December 19, 2013
-
DOI: https://doi.org/10.1007/s12275-013-3499-5
-
-
58
View
-
0
Download
-
4
Crossref
-
Abstract
-
A Gram-staining-negative, non-motile, catalase- and oxidasepositive
bacterium, designated strain I-15T, was isolated
from a crab of the Yellow Sea, Korea. On the basis of a 16S
rRNA gene sequence analysis, strain I-15T was shown to
belong to Bacteroidetes, related to the genus Aestuariibaculum.
Sequence similarity between strain I-15T and the only type
strain of the genus Aestuariibaculum, Aestuariibaculum suncheonense
SC17T, was 96.7%. Strain I-15T grew at 0.5–6.0%
(w/v) NaCl, at 10–42°C and at pH 4.5–8.0. It could hydrolyze
starch and Tweens 80. Menaquinone-6 was the only respiratory
quinone, and summed features 3 (C16:1 ω7c/C16:1 ω6c)
(16.4%), iso-C15:0 (15.6%), and iso-C15:1 G (12.6%) were the
major cellular fatty acids. The major polar lipids were phosphatidylethanolamine,
two unidentified aminolipids and two
unidentified lipids. The DNA G+C content was 39.0 mol%.
Polyphasic data allowed genotypic and phenotypic distinction
of strain I-15T from the only validly published Aestuariibaculum
species. Therefore, the organism is considered a
novel species of the genus Aestuariibaculum, for which the
name Aestuariibaculum scopimerae sp. nov. is proposed.
The type strain is I-15T (=KCTC 32459T =JCM 19486T).
-
Citations
Citations to this article as recorded by

- Aestuariibaculum lutulentum sp. nov., a marine bacterium isolated from coastal sediment in Beihai
Jia-Wei Gao, Dong-Yan He, Wen-Wu Zhang, Yu-Ruo Wang, Yue Su, Jun-Jie Ying, Zhi-Cheng Wu, Wu Qu, Lin Xu, Cong Sun
Archives of Microbiology.2023;[Epub] CrossRef - Complete genome sequence of carotenoid-producing Aestuariibaculum lutulentum L182T isolated from the tidal sediment
Wen-Jia Liu, Jia-Wei Gao, Yu Zhang, Cong Sun, Lin Xu
Marine Genomics.2023; 72: 101074. CrossRef - Aestuariibaculum sediminum sp. nov., a marine bacterium isolated from a tidal flat in Zhoushan
Zhi-Cheng Wu, Xin-Yin Zhang, Cong Sun, Lin Xu, Ge-Yi Fu, Xue-Wei Xu
Archives of Microbiology.2021; 203(6): 2953. CrossRef - List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef
- Sunxiuqinia dokdonensis sp. nov., Isolated from Deep Sub-Seafloor Sediment
-
Dong-Ho Chang , Jae-Bong Lee , Geun-Hye Lee , Moon-Soo Rhee , Haewon Lee , Kyung Sook Bae , Doo-Sang Park , Byoung-Chan Kim
-
J. Microbiol. 2013;51(6):741-746. Published online December 19, 2013
-
DOI: https://doi.org/10.1007/s12275-013-3492-z
-
-
49
View
-
0
Download
-
9
Crossref
-
Abstract
-
A novel facultatively anaerobic strain DH1T was isolated
from deep sub-seafloor sediment at a depth of 900 m below
the seafloor off Seo-do (the west part of Dokdo Island) in
the East Sea of the Republic of Korea. The new strain was
characterized using polyphasic approaches. The isolate was
Gram-stain-negative, motile by gliding, non-spore-forming
rods, oxidase-negative, and catalase-positive; and formed
colonies of orange-red color. The NaCl range for growth
was 0.5–7.0% (w/v) and no growth was observed in the absence
of NaCl. The isolate grew optimally at 30°C, with 2%
(w/v) NaCl and at pH 7. The cell-wall hydrolysates contained
ribose as a major sugar. The DNA G+C content was 40.8
mol%. The closest related strains are Sunxiuqinia faeciviva
JAM-BA0302T and Sunxiuqinia elliptica DQHS-4T (97.9 and
96.3% sequence similarity, respectively). The level of DNADNA
relatedness between strain DH1T and S. faeciviva JAMBA0302T
was around 41% (but only 6% between DH1T and
S. elliptica DQHS-4T). The major cellular fatty acids of the
isolate were contained iso-C15:0 (25.9%), anteiso-C15:0 (16.7%),
and summed feature 9 (comprising C16:0 3-OH and/or unknown
fatty acid of dimethylacetal ECL 17.157; 13.2%).
The predominant menaquinone was MK-7. On the basis of
polyphasic evidence from this study, the isolate was considered
to represent a novel species of the genus Sunxiuqinia,
for which the name Sunxiuqinia dokdonensis sp. nov. is
proposed; the type strain is DH1T (=KCTC 32503T =CGMCC
1.12676T =JCM 19380T).
-
Citations
Citations to this article as recorded by

- Deltaproteobacterium Strain KaireiS1, a Mesophilic, Hydrogen-Oxidizing and Sulfate-Reducing Bacterium From an Inactive Deep-Sea Hydrothermal Chimney
Nicole Adam, Yuchen Han, Katja Laufer-Meiser, Rebecca Bährle, Ulrich Schwarz-Schampera, Axel Schippers, Mirjam Perner
Frontiers in Microbiology.2021;[Epub] CrossRef -
Sunxiuqinia indica sp. nov., isolated from deep sea
Jianyang Li, Mingming Qi, Qiliang Lai, Guangyi Wang, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(7): 4186. CrossRef - Description of Maribellus sediminis sp. nov., a marine nitrogen-fixing bacterium isolated from sediment of cordgrass and mangrove
Zhaobin Huang, Yuzhong Hu, Qiliang Lai, Yu Guo
Systematic and Applied Microbiology.2020; 43(4): 126099. CrossRef - Simulated reactive zone with emulsified vegetable oil for the long-term remediation of Cr(VI)-contaminated aquifer: dynamic evolution of geological parameters and groundwater microbial community
Jun Dong, Jinqiu Yu, Qiburi Bao
Environmental Science and Pollution Research.2018; 25(34): 34392. CrossRef - Whole-genome sequence of Sunxiuqinia dokdonensis DH1 T , isolated from deep sub-seafloor sediment in Dokdo Island
Sooyeon Lim, Dong-Ho Chang, Byoung-Chan Kim
Genomics Data.2016; 9: 95. CrossRef - The composition, localization and function of low-temperature-adapted microbial communities involved in methanogenic degradations of cellulose and chitin from Qinghai-Tibetan Plateau wetland soils
Y. Dai, Z. Yan, L. Jia, S. Zhang, L. Gao, X. Wei, Z. Mei, X. Liu
Journal of Applied Microbiology.2016; 121(1): 163. CrossRef -
Roseimarinus sediminis gen. nov., sp. nov., a facultatively anaerobic bacterium isolated from coastal sediment
Wen-Jie Wu, Qian-Qian Liu, Guan-Jun Chen, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_7): 2260. CrossRef - Erysipelothrix larvae sp. nov., isolated from the larval gut of the rhinoceros beetle, Trypoxylus dichotomus (Coleoptera: Scarabaeidae)
Byung-Ho Bang, Moon-Soo Rhee, Dong-Ho Chang, Doo-Sang Park, Byoung-Chan Kim
Antonie van Leeuwenhoek.2015; 107(2): 443. CrossRef - Bacterial colonization of a fumigated alkaline saline soil
Juan M. Bello-López, Cristina A. Domínguez-Mendoza, Arit S. de León-Lorenzana, Laura Delgado-Balbuena, Yendi E. Navarro-Noya, Selene Gómez-Acata, Analine Rodríguez-Valentín, Victor M. Ruíz-Valdiviezo, Marco Luna-Guido, Nele Verhulst, Bram Govaerts, Luc De
Extremophiles.2014; 18(4): 733. CrossRef
- Diversity of the Bacterial Community in the Rice Rhizosphere Managed Under Conventional and No-tillage Practices
-
Zubair Aslam , Muhammad Yasir , Hwan Sik Yoon , Che Ok Jeon , Young Ryun Chung
-
J. Microbiol. 2013;51(6):747-756. Published online December 19, 2013
-
DOI: https://doi.org/10.1007/s12275-013-2528-8
-
-
45
View
-
0
Download
-
24
Crossref
-
Abstract
-
Bacterial diversity in the rice rhizosphere at different rice
growth stages, managed under conventional and no-tillage
practices, was explored using a culture-based approach.
Actinobacteria are among the bacterial phyla abundant in
the rice rhizosphere. Their diversity was further examined by
constructing metagenomic libraries based on the 16S rRNA
gene, using actinobacterial- and streptomycete-specific polymerase
chain reaction (PCR) primers. The study included
132 culturable strains and 125 clones from the 16S rRNA gene
libraries. In conventional tillage, there were 38% Proteobacteria,
22% Actinobacteria, 33% Firmicutes, 5% Bacteroidetes,
and 2% Acidobacteria, whereas with no-tillage management
there were 63% Proteobacteria, 24% Actinobacteria, 6% Firmicutes,
and 8% Bacteroidetes as estimated using the culturedependent
method
during the four stages of rice cultivation.
Principal coordinates analysis was used to cluster the bacterial
communities along axes of maximal variance. The different
growth stages of rice appeared to influence the rhizosphere
bacterial profile for both cultivation practices. Novel
clones with low similarities (89–97%) to Actinobacteria and
Streptomyces were retrieved from both rice fields by screening
the 16S rRNA gene libraries using actinobacterial- and
streptomycete-specific primers. By comparing the actinobacterial
community retrieved by culture-dependent and
molecular methods, it was clear that a more comprehensive
assessment of microbial diversity in the rice rhizosphere can
be obtained using a combination of both techniques than
by using either method alone. We also succeeded in culturing
a number of bacteria that were previously described as
unculturable. These were in a phylogenetically deep lineage when compared with related cultivable genera.
-
Citations
Citations to this article as recorded by

- Impact of Rhizospheric Microbiome on Rice Cultivation
Md Majharul Islam, Santosh Kumar Jana, Subhadipa Sengupta, Sukhendu Mandal
Current Microbiology.2024;[Epub] CrossRef - Profiling of rhizosphere bacterial community associated with sugarcane and banana rotation system
Ziting Yao, Abdullah Khan, Yuzhi Xu, Kaiyuan Pan, Muqing Zhang
Chemical and Biological Technologies in Agriculture.2024;[Epub] CrossRef - Soil and Phytomicrobiome for Plant Disease Suppression and Management under Climate Change: A Review
Wen Chen, Dixi Modi, Adeline Picot
Plants.2023; 12(14): 2736. CrossRef - Microbial Community Shifts with Soil Properties and Enzyme Activities in Inter-/Mono-Cropping Systems in Response to Tillage
Peina Lu, Cai Zhao, Wen Yin, Falong Hu, Zhilong Fan, Aizhong Yu, Hong Fan
Agronomy.2023; 13(11): 2707. CrossRef - Long-term agro-management strategies shape soil bacterial community structure in dryland wheat systems
Shikha Singh, Surendra Singh, Scott B. Lukas, Stephen Machado, Amin Nouri, Francisco Calderon, Elizabeth R. Rieke, Shannon B. Cappellazzi
Scientific Reports.2023;[Epub] CrossRef - Microbial Inoculations Promoted the Rice Plant Growth by Regulating the Root-Zone Bacterial Community Composition and Potential Function
Yifeng Gui, Caihong Gu, Xian Xiao, Yuexiang Gao, Yuan Zhao
Journal of Soil Science and Plant Nutrition.2023; 23(4): 5222. CrossRef - Study of Rhizosphere Microbial Community Structures of Asian Wild and Cultivated Rice Showed That Cultivated Rice Had Decreased and Enriched Some Functional Microorganisms in the Process of Domestication
Jianfeng Zhang, Zongmu Yao, Yalin Chen, Jiafan Zhang, Shouyang Luo, Chunjie Tian, Lei Tian
Diversity.2022; 14(2): 67. CrossRef - Diversity of rice rhizosphere microorganisms under different fertilization modes of slow-release fertilizer
Yulin Chen, Panfeng Tu, Yibin Yang, Xinhai Xue, Zihui Feng, Chenxin Dan, Fengxian Cheng, Yifan Yang, Lansheng Deng
Scientific Reports.2022;[Epub] CrossRef - Dynamic change in bacterial communities in the integrated rice–fish farming system in Sleman, Yogyakarta, Indonesia
Afri Herlambang, Murwantoko Murwantoko, Indah Istiqomah
Aquaculture Research.2021; 52(11): 5566. CrossRef - No tillage and residue mulching method on bacterial community diversity regulation in a black soil region of Northeastern China
Lijun Cai, Zhenhua Guo, Jingtao Zhang, Zhijia Gai, Jingqi Liu, Qingying Meng, Xiaohu Liu, Dafeng Hui
PLOS ONE.2021; 16(9): e0256970. CrossRef - Soil Bacterial Diversity and Potential Functions Are Regulated by Long-Term Conservation Tillage and Straw Mulching
Chang Liu, Lingling Li, Junhong Xie, Jeffrey A. Coulter, Renzhi Zhang, Zhuzhu Luo, Liqun Cai, Linlin Wang, Subramaniam Gopalakrishnan
Microorganisms.2020; 8(6): 836. CrossRef - Conservation tillage increased soil bacterial diversity and improved soil nutrient status on the Loess Plateau in China
Hao Wang, Shulan Wang, Rui Wang, Xiaoli Wang, Jun Li
Archives of Agronomy and Soil Science.2020; 66(11): 1509. CrossRef - Changes in soil organic carbon fractions and bacterial community composition under different tillage and organic fertiliser application in a maize−wheat rotation system
Daijing Zhang, Xueqian Yang, Yanjie Wang, Jiejing Zong, Jianhui Ma, Chunxi Li
Acta Agriculturae Scandinavica, Section B — Soil & Plant Science.2020; 70(6): 457. CrossRef - Effects of tillage practices on soil microbiome and agricultural parameters
Judith Kraut-Cohen, Avihai Zolti, Liora Shaltiel-Harpaz, Eli Argaman, Rachel Rabinovich, Stefan J. Green, Dror Minz
Science of The Total Environment.2020; 705: 135791. CrossRef - Cultivated rice rhizomicrobiome is more sensitive to environmental shifts than that of wild rice in natural environments
Shangqi Xu, Lei Tian, Chunling Chang, Xiujun Li, Chunjie Tian
Applied Soil Ecology.2019; 140: 68. CrossRef - Differences in rice rhizosphere bacterial community structure by application of lignocellulolytic plant-probiotic bacteria with rapid composting traits
Thounaojam Nevita, G.D. Sharma, Piyush Pandey
Ecological Engineering.2018; 120: 209. CrossRef - Bacterial diversity of the rhizosphere and nearby surface soil of rice (Oryza sativa) growing in the Camargue (France)
Jorge R. Osman, Gustavo Fernandes, Michael S. DuBow
Rhizosphere.2017; 3: 112. CrossRef - Seasonal and Interannual Fluctuation of the Microbial Soil Community in a Maize Field under Long-Term Conservation Agriculture Management
Manuel Ramírez, Antonio López-Piñeiro, David Peña, José Rato Nunes, Ángel Albarrán, Ana Muñoz, José Gama, Luis Loures
Sustainability.2017; 9(5): 778. CrossRef - Microbiotes et métagénomique
Jean Weissenbach, Abdelghani Sghir
médecine/sciences.2016; 32(11): 937. CrossRef - Distribution and activity of the anaerobic methanotrophic community in a nitrogen-fertilized Italian paddy soil
A. Vaksmaa, C. Lüke, T. van Alen, G. Valè, E. Lupotto, M. S. M Jetten, K. F. Ettwig, Gary King
FEMS Microbiology Ecology.2016; 92(12): fiw181. CrossRef - Biological Control of Rice Bakanae by an Endophytic Bacillus oryzicola YC7007
Mohammad Tofajjal Hossain, Ajmal Khan, Eu Jin Chung, Md. Harun-Or Rashid, Young Ryun Chung
The Plant Pathology Journal.2016; 32(3): 228. CrossRef - Roseomonas oryzicola sp. nov., isolated from the rhizosphere of rice (Oryza sativa L.)
Eu Jin Chung, Hwan Sik Yoon, Kyung Hyun Kim, Che Ok Jeon, Young Ryun Chung
International Journal of Systematic and Evolutionary Microbiology.2015; 65(Pt_12): 4839. CrossRef - Role of root microbiota in plant productivity
A. Tkacz, P. Poole
Journal of Experimental Botany.2015; 66(8): 2167. CrossRef - Impact of plant development on the rhizobacterial population of Arachis hypogaea: a multifactorial analysis
Shyamalina Haldar, Sanghamitra Sengupta
Journal of Basic Microbiology.2015; 55(7): 922. CrossRef
- Diversity of Cyanobacterial Species and Phylotypes in Biofilms from the Littoral Zone of Lake Baikal
-
Ekaterina G. Sorokovikova , Olga I. Belykh , Anna S. Gladkikh , Oleg V. Kotsar , Irina V. Tikhonova , Oleg A. Timoshkin , Valentina V. Parfenova
-
J. Microbiol. 2013;51(6):757-765. Published online December 19, 2013
-
DOI: https://doi.org/10.1007/s12275-013-3240-4
-
-
43
View
-
0
Download
-
12
Crossref
-
Abstract
-
The majority of naturally occurring biofilms contain numerous
microorganisms that have not yet been cultured.
Additionally, there is little information available regarding
the genetic structure and species diversity of these communities.
Therefore, we characterised the species diversity, structure
and metagenome of biofilms grown on stones and
steel plates in the littoral zone of Lake Baikal (East Siberia,
Russia) by applying three different approaches. First, light
microscopy enabled identification of the species diversity of
biofilm-forming cyanobacteria on different substrates with
the dominance of Rivularia rufescens, Tolypothrix limbata,
Chamaesiphon fuscus, Сh. subglobosus, and Heteroleibleinia
pusilla. Additionally, scanning electron microscopy was used
to show the spatial structure of biofilms. Finally, sequence
analysis of 30,660 16S rRNA clones indicated a high diversity
within the biofilm communities, with the majority of the
microbes being closely related to Cyanobacteria (8–46% sequences),
Proteobacteria (14–43%), and Bacteroidetes (10–
41%). Rivularia sp., Pseudanabaena sp., and Chamaesiphon
spp. were the dominant cyanobacterial phylotypes.
-
Citations
Citations to this article as recorded by

- Genomic Insights into the Bactericidal and Fungicidal Potential of Bacillus mycoides b12.3 Isolated in the Soil of Olkhon Island in Lake Baikal, Russia
Maria N. Romanenko, Anton E. Shikov, Iuliia A. Savina, Fedor M. Shmatov, Anton A. Nizhnikov, Kirill S. Antonets
Microorganisms.2024; 12(12): 2450. CrossRef - Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake
Arianna I. Krinos, Robert M. Bowers, Robin R. Rohwer, Katherine D. McMahon, Tanja Woyke, Frederik Schulz
Microbiome.2024;[Epub] CrossRef - Impact of meltwater flow intensity on the spatiotemporal heterogeneity of microbial mats in the McMurdo Dry Valleys, Antarctica
A Zoumplis, B Kolody, D Kaul, H Zheng, P Venepally, D M McKnight, C Takacs-Vesbach, A DeVries, A E Allen
ISME Communications.2023;[Epub] CrossRef - Water Quality, Toxicity and Diversity of Planktonic and Benthic Cyanobacteria in Pristine Ancient Lake Khubsugul (Hövsgöl), Mongolia
Olga I. Belykh, Ekaterina G. Sorokovikova, Irina V. Tomberg, Galina A. Fedorova, Anton V. Kuzmin, Andrey Yu. Krasnopeev, Maria Yu. Suslova, Sergey A. Potapov, Tatiana I. Belykh, Jadambaa Norovsuren, Agnia D. Galachyants, Irina V. Tikhonova
Toxins.2023; 15(3): 213. CrossRef - Diversity of Aerobic Anoxygenic Phototrophs and Rhodopsin-Containing Bacteria in the Surface Microlayer, Water Column and Epilithic Biofilms of Lake Baikal
Agnia Dmitrievna Galachyants, Andrey Yurjevich Krasnopeev, Galina Vladimirovna Podlesnaya, Sergey Anatoljevich Potapov, Elena Viktorovna Sukhanova, Irina Vasiljevna Tikhonova, Ekaterina Andreevna Zimens, Marsel Rasimovich Kabilov, Natalia Albertovna Zhuch
Microorganisms.2021; 9(4): 842. CrossRef - First data on cyanobacterial biodiversity in benthic biofilms during mass mortality of endemic sponges in Lake Baikal
Ekaterina Sorokovikova, Olga Belykh, Andrey Krasnopeev, Sergey Potapov, Irina Tikhonova, Igor Khanaev, Marsel Kabilov, Olga Baturina, Galina Podlesnaya, Oleg Timoshkin
Journal of Great Lakes Research.2020; 46(1): 75. CrossRef - Microbial bloom formation in a high pH spent nuclear fuel pond
Lynn Foster, Christopher Boothman, Sharon Ruiz-Lopez, Genevieve Boshoff, Peter Jenkinson, David Sigee, Jon K. Pittman, Katherine Morris, Jonathan R. Lloyd
Science of The Total Environment.2020; 720: 137515. CrossRef - Variation of sponge-inhabiting infauna with the state of health of the sponge Lubomirskia baikalensis (Pallas, 1776) in Lake Baikal
Yulia Zvereva, Olga Medvezhonkova, Tatyana Naumova, Natalia Sheveleva, Anton Lukhnev, Ekaterina Sorokovikova, Taisia Evstigneeva, Oleg Timoshkin
Limnology.2019; 20(3): 267. CrossRef - Diazotrophic cyanobacteria signatures and their relationship to hydrographic conditions in the Gulf of Gabes, Tunisia
Zaher Drira, Dorra Chaari, Asma Hamza, Malika Bel Hassen, Marc Pagano, Habib Ayadi
Journal of the Marine Biological Association of the United Kingdom.2017; 97(1): 69. CrossRef - Patterns of bacterial biodiversity in the glacial meltwater streams of the McMurdo Dry Valleys, Antarctica
David J. Van Horn, Caitlin R. Wolf, Daniel R. Colman, Xiaoben Jiang, Tyler J. Kohler, Diane M. McKnight, Lee F. Stanish, Terrill Yazzie, Cristina D. Takacs-Vesbach, Max Häggblom
FEMS Microbiology Ecology.2016; 92(10): fiw148. CrossRef - Taxonomic study of the genus Chamaesiphon (Chroococcales: Cyanoprokaryota) reported from India with two new distributional records
Sudipta Kumar Das
Feddes Repertorium.2015; 126(1-2): 22. CrossRef - Distribution and Ecology of Cyanobacteria in the Rocky Littoral of an English Lake District Water Body, Devoke Water
Allan Pentecost
Life.2014; 4(4): 1026. CrossRef
- The Proportion of Non-Aflatoxigenic Strains of the Aspergillus flavus/oryzae Complex from Meju by Analyses of the Aflatoxin Biosynthetic Genes
-
Seung-Beom Hong , Mina Lee , Dae-Ho Kim , Soo-Hyun Chung , Hyeon-Dong Shin , Robert A. Samson
-
J. Microbiol. 2013;51(6):766-772. Published online December 19, 2013
-
DOI: https://doi.org/10.1007/s12275-013-3128-3
-
-
43
View
-
0
Download
-
13
Crossref
-
Abstract
-
Strains of the Aspergillus flavus/oryzae complex are frequently
isolated from meju, a fermented soybean product, that is used
as the starting material for ganjang (soy sauce) and doenjang
(soybean paste) production. In this study, we examined the
aflatoxin producing capacity of A. flavus/oryzae strains isolated
from meju. 192 strains of A. flavus/oryzae were isolated
from more than 100 meju samples collected from diverse
regions of Korea from 2008 to 2011, and the norB-cypA,
omtA, and aflR genes in the aflatoxin biosynthesis gene
cluster were analyzed. We found that 178 strains (92.7%)
belonged to non-aflatoxigenic group (Type I of norB-cypA,
IB-L-B-, IC-AO, or IA-L-B- of omtA, and AO type of aflR),
and 14 strains (7.3%) belonged to aflatoxin-producible group
(Type II of norB-cypA, IC-L-B+/B- or IC-L-B+ of omtA, and
AF type of aflR). Only 7 strains (3.6%) in the aflatoxin-producible
group produced aflatoxins on Czapek yeast-extract
medium. The aflatoxin-producing capability of A. flavus/
oryzae strains from other sources in Korea were also investigated,
and 92.9% (52/56) strains from air, 93.9% (31/33)
strains from rice straw, 91.7% (11/12) strains from soybean,
81.3% (13/16) strains from corn, 82% (41/50) strains from
peanut, and 73.2% (41/56) strains from arable soil were included
in the non-aflatoxigenic group. The proportion of
non-aflatoxigenicity of meju strains was similar to that of
strains from soybean, air and rice straw, all of which have
an effect on the fermentation of meju. The data suggest that
meju does not have a preference for non-aflatoxigenic or aflatoxin-producible strains of A. flavus/oryzae from the
environment of meju. The non-aflatoxigenic meju strains
are proposed to be named A. oryzae, while the meju strains
that can produce aflatoxins should be referred to A. flavus
in this study.
-
Citations
Citations to this article as recorded by

- Inhibitory Effects of Bacillus subtilis Isolated from Meju (Fermented Soybean Brick) on the Growth of Aspergillus parasiticus
Jong-Gyu Kim, Jeong-Yeong Park
Applied Microbiology.2024; 4(1): 354. CrossRef - Analysis of microbial community and the characterization of Aspergillus flavus in Liuyang Douchi during fermentation
Yi Chen, Pao Li, Weiwei He, Luyan Liao, Bo Xia, Liwen Jiang, Yang Liu
LWT.2022; 154: 112567. CrossRef - Effect of allyl isothiocyanate on transcriptional profile, aflatoxin synthesis, and Aspergillus flavus growth
Tiago de Melo Nazareth, Manuel Alonso-Garrido, Oana Stanciu, Jordi Mañes, Lara Manyes, Giuseppe Meca
Food Research International.2020; 128: 108786. CrossRef - Safety of the fungal workhorses of industrial biotechnology: update on the mycotoxin and secondary metabolite potential of Aspergillus niger, Aspergillus oryzae, and Trichoderma reesei
Jens C. Frisvad, Lars L. H. Møller, Thomas O. Larsen, Ravi Kumar, José Arnau
Applied Microbiology and Biotechnology.2018; 102(22): 9481. CrossRef - A comparative secretome analysis of industrial Aspergillus oryzae and its spontaneous mutant ZJGS-LZ-21
Yuanyuan Zhu, Xinle Liang, Hong Zhang, Wei Feng, Ye Liu, Fuming Zhang, Robert J Linhardt
International Journal of Food Microbiology.2017; 248: 1. CrossRef - Mold and Human Health: a Reality Check
Andrea T. Borchers, Christopher Chang, M. Eric Gershwin
Clinical Reviews in Allergy & Immunology.2017; 52(3): 305. CrossRef - Addition of Carbon to the Culture Medium Improves the Detection Efficiency of Aflatoxin Synthetic Fungi
Tadahiro Suzuki, Yumiko Iwahashi
Toxins.2016; 8(11): 338. CrossRef - Mycobiota of ground red pepper and their aflatoxigenic potential
Hyeonheui Ham, Sosoo Kim, Min-Hee Kim, Soohyung Lee, Sung Kee Hong, Jae-Gee Ryu, Theresa Lee
Journal of Microbiology.2016; 54(12): 832. CrossRef - Species List of Aspergillus, Penicillium and Talaromyces in Korea, Based on ‘One Fungus One Name’ System
The Korean Journal of Mycology.2016;[Epub] CrossRef - Taxonomic Characterization and Safety of Nuruk Molds Used Industrially in Korea
The Korean Journal of Mycology.2015;[Epub] CrossRef - High sequence variations in the region containing genes encoding a cellular morphogenesis protein and the repressor of sexual development help to reveal origins of Aspergillus oryzae
Perng-Kuang Chang, Leslie L. Scharfenstein, Cesar D. Solorzano, Hamed K. Abbas, Sui-Sheng T. Hua, Walker A. Jones, Robert M. Zablotowicz
International Journal of Food Microbiology.2015; 200: 66. CrossRef - The potential hazards of Aspergillus sp. in foods and feeds, and the role of biological treatment: A review
Sheikh Imranudin Sheikh-Ali, Akil Ahmad, Siti-Hamidah Mohd-Setapar, Zainul Akmal Zakaria, Norfahana Abdul-Talib, Aidee Kamal Khamis, Md Enamul Hoque
Journal of Microbiology.2014; 52(10): 807. CrossRef - Diversity, Saccharification Capacity, and Toxigenicity Analyses of Fungal Isolates in Nuruk
Min Sik Kim, Sinil Kim, Byeong-Seok Ha, Hye-Young Park, Seong-Yeol BaeK, Soo-Hwan Yeo, Hyeon-Su Ro
The Korean Journal of Mycology.2014; 42(3): 191. CrossRef
- Enhanced Production of Biomass and Lipids by Supplying CO2 in Marine Microalga Dunaliella sp.
-
Hancheol Jeon , Yew Lee , Kwang Suk Chang , Choul-Gyun Lee , EonSeon Jin
-
J. Microbiol. 2013;51(6):773-776. Published online December 19, 2013
-
DOI: https://doi.org/10.1007/s12275-013-3256-9
-
-
43
View
-
0
Download
-
6
Crossref
-
Abstract
-
Non-food-based biofuel feedstocks are in high demand
worldwide. Among the various feedstocks, microalgae are
the most promising feedstock for mitigating atmospheric
CO2 and producing biodiesel. In this study, various concentrations
of CO2, from 0.03 to 12%, were used to investigate
their effect on the cell growth, biomass and lipid production
and fatty acid composition of Dunaliella sp. in a
closed photobioreactor. The results showed that the highest
biomass and total lipids, 521 mg/L/d and 40 mg/L/d, respectively,
were produced with 5% CO2 aeration during the
logarithmic growth phase. The oleic acid (18:1n9c) and elaidic
acid (18:1n9t) contents were increased approximately
two fold. The physiological responses of Dunaliella sp. at
10% CO2 were similar to those at 5% CO2. Therefore, the
present results suggest that 5–10% is a suitable CO2 concentration
range for Dunaliella sp. growth to mitigate atmospheric
CO2 and increase biofuel production.
-
Citations
Citations to this article as recorded by

- Stabilized and Immobilized Carbonic Anhydrase on Electrospun Nanofibers for Enzymatic CO2 Conversion and Utilization in Expedited Microalgal Growth
Seung-Hyun Jun, Jusang Yang, Hancheol Jeon, Han Sol Kim, Seung Pil Pack, EonSeon Jin, Jungbae Kim
Environmental Science & Technology.2020; 54(2): 1223. CrossRef - CO2 biofixation and fatty acid composition of two indigenous Dunaliella sp. isolates (ABRIINW-CH2 and ABRIINW-SH33) in response to extremely high CO2 levels
Roya Moghimifam, Vahid Niknam, Hassan Ebrahimzadeh, Mohammad Amin Hejazi
Bioprocess and Biosystems Engineering.2020; 43(9): 1587. CrossRef - In situ biological CO2 fixation and wastewater nutrient removal with Neochloris oleoabundans in batch photobioreactor
S. A. Razzak
Bioprocess and Biosystems Engineering.2019; 42(1): 93. CrossRef - Lipid Production by Arctic Microalga Chlamydomonas sp. KNF0008 at Low Temperatures
Eun Jae Kim, Woongsic Jung, Suyoun Lim, Sanghee Kim, Han-Gu Choi, Se Jong Han
Applied Biochemistry and Biotechnology.2019; 188(2): 326. CrossRef - Microalgal Cultivation in Secondary Effluent: Recent Developments and Future Work
Junping Lv, Jia Feng, Qi Liu, Shulian Xie
International Journal of Molecular Sciences.2017; 18(1): 79. CrossRef - Effect of Pulsed Electric Field Treatments on Permeabilization and Extraction of Pigments from Chlorella vulgaris
Elisa Luengo, Santiago Condón-Abanto, Ignacio Álvarez, Javier Raso
The Journal of Membrane Biology.2014; 247(12): 1269. CrossRef
- Lactobacillus paracasei subsp. paracasei LC01 Positively Modulates Intestinal Microflora in Healthy Young Adults
-
Hao Zhang , Jing Sun , Xianting Liu , Chuan Hong , Yuanbo Zhu , Aiping Liu , Siqi Li , Huiyuan Guo , Fazheng Ren
-
J. Microbiol. 2013;51(6):777-782. Published online December 19, 2013
-
DOI: https://doi.org/10.1007/s12275-013-3279-2
-
-
46
View
-
0
Download
-
21
Crossref
-
Abstract
-
Lactobacillus paracasei subsp. paracasei LC01 (LC01) can
tolerate intestinal stresses and has antioxidant activity. To
evaluate the effect of the bacterium on human intestinal microflora,
a randomized, double-blind, placebo-controlled
human trial was carried out. Fifty-two healthy adult volunteers
were randomized equally to two groups. One group
consumed 12% (wt/vol) skimmed milk supplemented with
1010 CFU of LC01 each day for the 4-week treatment period,
and then consumed placebo in the next treatment period,
separated by a 2-week washout. The other group followed
the reverse order. Group-specific real-time PCR and biochemical
analyses was used to determine the intestinal bacterial
composition of fecal samples collected at the end of
every period, and the concentration of short-chain fatty acids
and ammonia. A significant inhibition in fecal Escherichia
coli and increase in Lactobacillus, Bifidobacterium, and Roseburia
intestinalis were observed after consumption of LC01.
Acetic acid and butyric acid were significantly higher in the
probiotic stage and fecal ammonia was significantly lower.
The results indicated a modulation effect of LC01 on the
intestinal microflora of young adults, suggesting a beneficial
effect on bowel health. LC01 may have potential value as a
probiotic.
-
Citations
Citations to this article as recorded by

- Targeting maternal gut microbiome to improve mental health outcomes—a pilot feasibility trial
Faith Gallant, Kieran Cooley, Sophie Grigoriadis, Neda Ebrahimi
Frontiers in Psychiatry.2024;[Epub] CrossRef - Ameliorative effects of pine nut peptide-zinc chelate (Korean pine) on a mouse model of Alzheimer's disease
Zhi Zhang, Jiajia Sun, Yanxia Li, Kexin Yang, Gang Wei, Shenglong Zhang
Experimental Gerontology.2023; 183: 112308. CrossRef - Dietary Lactobacillus fermentum and Lactobacillus paracasei improve the intestinal health of broilers challenged with coccidia and Clostridium perfringens
Peng Li, Liyun Zheng, Ya Qi, Zhipeng Liu, Encun Du, Jintao Wei, Zhengfan Zhang, Shuangshuang Guo, Binying Ding
Frontiers in Veterinary Science.2022;[Epub] CrossRef - Chemical composition and sensory properties of fermented citrus juice using probiotic lactic acid bacteria
Masahiro Yuasa, Ami Shimada, Ayumi Matsuzaki, Ayaka Eguchi, Mihoko Tominaga
Food Bioscience.2021; 39: 100810. CrossRef - The role of short-chain fatty acids in the interplay between gut microbiota and diet in cardio-metabolic health
Ana Nogal, Ana M. Valdes, Cristina Menni
Gut Microbes.2021;[Epub] CrossRef - Differences in Manifestations and Gut Microbiota Composition Between Patients With Different Henoch-Schonlein Purpura Phenotypes
Yuanzhen Zhang, Guizhi Xia, Xiaojing Nie, Yugui Zeng, Yi Chen, Yifang Qian, Guangming Chen, Jun Huang, Chengfeng Wang, Chuanyin Zhang, Xiaoli Huang, Yuen Yang, Xiaojian Qiu, Fang Yang, Jie Chen, Jun Hu
Frontiers in Cellular and Infection Microbiology.2021;[Epub] CrossRef - Lactobacillus casei LC01 Regulates Intestinal Epithelial Permeability through miR-144 Targeting of OCLN and ZO1
Qiuke Hou, Yongquan Huang, Yan Wang, Liu Liao, Zhaoyang Zhu, Wenjie Zhang, Yongshang Liu, Peiwu Li, Xinlin Chen, Fengbin Liu
Journal of Microbiology and Biotechnology.2020; 30(10): 1480. CrossRef - Gut microbiota is associated with adiposity markers and probiotics may impact specific genera
Aline Corado Gomes, Christian Hoffmann, João Felipe Mota
European Journal of Nutrition.2020; 59(4): 1751. CrossRef - Microbiota and Lifestyle: A Special Focus on Diet
Noemí Redondo-Useros, Esther Nova, Natalia González-Zancada, Ligia E. Díaz, Sonia Gómez-Martínez, Ascensión Marcos
Nutrients.2020; 12(6): 1776. CrossRef - Hematobiochemical and Immunological Responses of Rats Treated with Multi-strain Probiotics and Infected with Trypanosoma brucei
Chukwuemeka Calistus Okolo, Nwakaego Ernestina Nweze, Ifeanyi James Eze
Probiotics and Antimicrobial Proteins.2020; 12(3): 952. CrossRef - Effects of Regular Kefir Consumption on Gut Microbiota in Patients with Metabolic Syndrome: A Parallel-Group, Randomized, Controlled Study
Ezgi BELLIKCI-KOYU, Banu Pınar SARER-YUREKLI, Yakut AKYON, Fadime AYDIN-KOSE, Cem KARAGOZLU, Ahmet Gokhan OZGEN, Annika BRINKMANN, Andreas NITSCHE, Koray ERGUNAY, Engin YILMAZ, Zehra BUYUKTUNCER
Nutrients.2019; 11(9): 2089. CrossRef - “Physicochemical, immunomodulatory and safety aspects of milks fermented with Lactobacillus paracasei isolated from kefir”
Ana A. Bengoa, Carolina Iraporda, Leonardo B. Acurcio, Sávio H. de Cicco Sandes, Karen Costa, Gabriele Moreira Guimarães, Rosa M. Esteves Arantes, Elisabeth Neumann, Álvaro Cantini Nunes, Jaques R. Nicoli, Graciela L. Garrote, Analía G. Abraham
Food Research International.2019; 123: 48. CrossRef - Use of Gas Chromatography to Quantify Short Chain Fatty Acids in the Serum, Colonic Luminal Content and Feces of Mice
Willian Ribeiro, Marco Vinolo, Leandro Calixto, Caroline Ferreira
BIO-PROTOCOL.2018;[Epub] CrossRef -
Roseburia
Spp.: A Marker of Health?
Zohreh Tamanai-Shacoori, Imen Smida, Latifa Bousarghin, Olivier Loreal, Vincent Meuric, Shao Bing Fong, Martine Bonnaure-Mallet, Anne Jolivet-Gougeon
Future Microbiology.2017; 12(2): 157. CrossRef - An overview of advanced technologies for selection of probiotics and their expediency: A review
Ruby Yadav, Pratyoosh Shukla
Critical Reviews in Food Science and Nutrition.2017; 57(15): 3233. CrossRef - RNA and a cell wall component of Enterococcus faecalis IC-1 are required for phagocytosis and interleukin 12 production by the mouse macrophage cell line J774.1
Junpei Nakase, Yuuichi Ukawa, Syoji Takemoto, Takayoshi Kubo, Yuko M Sagesaka, Ayako Aoki-Yoshida, Mamoru Totsuka
Bioscience, Biotechnology, and Biochemistry.2017; 81(6): 1099. CrossRef - The Role of Probiotics on the Microbiota
Esther Nova, Fátima Pérez de Heredia, Sonia Gómez‐Martínez, Ascensión Marcos
Nutrition in Clinical Practice.2016; 31(3): 387. CrossRef - The growth potential for dairy probiotics
Gregor Reid
International Dairy Journal.2015; 49: 16. CrossRef - Fate, activity, and impact of ingested bacteria within the human gut microbiota
Muriel Derrien, Johan E.T. van Hylckama Vlieg
Trends in Microbiology.2015; 23(6): 354. CrossRef - Cellular model to assess the antioxidant activity of lactobacilli
Jiali Xing, Gang Wang, Zhennan Gu, Xiaoming Liu, Qiuxiang Zhang, Jianxin Zhao, Hao Zhang, Yong Q. Chen, Wei Chen
RSC Advances.2015; 5(47): 37626. CrossRef - Antiviral effects of Lactobacillus ruminis SPM0211 and Bifidobacterium longum SPM1205 and SPM1206 on rotavirus-infected Caco-2 cells and a neonatal mouse model
Joo Yeon Kang, Do Kyung Lee, Nam Joo Ha, Hea Soon Shin
Journal of Microbiology.2015; 53(11): 796. CrossRef
- Influence of Acetobacter pasteurianus SKU1108 aspS Gene Expression on Escherichia coli Morphology
-
Kannipa Tasanapak , Uraiwan Masud-Tippayasak , Kazunobu Matsushita , Wichien Yongmanitchai , Gunjana Theeragool
-
J. Microbiol. 2013;51(6):783-790. Published online December 19, 2013
-
DOI: https://doi.org/10.1007/s12275-013-2619-6
-
-
46
View
-
0
Download
-
3
Crossref
-
Abstract
-
The aspS gene encoding Aspartyl-tRNA synthetase (AspRS)
from a thermotolerant acetic acid bacterium, Acetobacter
pasteurianus SKU1108, has been cloned and characterized.
The open reading frame (ORF) of the aspS gene consists of
1,788 bp, encoding 595 amino acid residues. The highly
conserved Gly-Val-Asp-Arg ATP binding motif (motif 3) is
located at the position 537-540 in the C-terminus. Deletion
analysis of the aspS gene upstream region suggested that
the promoter is around 173 bp upstream from the ATG initiation
codon. Interestingly, transformation with the plasmids
pGEM-T138, pUC138, and pCM138 synthesizing 138
amino acid C-terminal fragments of AspRS, that carry the
ATP binding domain, caused E. coli cell lengthening at 37 and
42°C. Moreover, E. coli harboring pUC595 (synthesizing all
595 amino acids) and a disordered aspS gene in pGEM-T138
had normal rod shapes. The normal rod shape was observed
in E. coli harboring pD539V following site-directed mutagenesis
of the ATP binding domain. We propose that overproduction
of truncated C-terminal peptides of AspRS may
cause sequestration of intracellular ATP in E. coli, leaving
less ATP for cell division or shaping cell morphology.
-
Citations
Citations to this article as recorded by

- Response of the microbiome–gut–brain axis in Drosophila to amino acid deficit
Boram Kim, Makoto I. Kanai, Yangkyun Oh, Minsoo Kyung, Eun-Kyoung Kim, In-Hwan Jang, Ji-Hoon Lee, Sang-Gyu Kim, Greg S. B. Suh, Won-Jae Lee
Nature.2021; 593(7860): 570. CrossRef - Genome-Wide Identification of Small RNAs in Bifidobacterium animalis subsp. lactis KLDS 2.0603 and Their Regulation Role in the Adaption to Gastrointestinal Environment
De-Quan Zhu, Fei Liu, Yu Sun, Li-Mei Yang, Li Xin, Xiang-Chen Meng, Yung-Fu Chang
PLOS ONE.2015; 10(2): e0117373. CrossRef - Acetic acid bacteria: A group of bacteria with versatile biotechnological applications
Natsaran Saichana, Kazunobu Matsushita, Osao Adachi, Ivo Frébort, Jitka Frebortova
Biotechnology Advances.2015; 33(6): 1260. CrossRef
- Trans-Membrane Transport of n-Octadecane by Pseudomonas sp. DG17
-
Fei Hua , Hong Qi Wang , Yi Li , Yi Cun Zhao
-
J. Microbiol. 2013;51(6):791-799. Published online December 19, 2013
-
DOI: https://doi.org/10.1007/s12275-013-3259-6
-
-
45
View
-
0
Download
-
17
Crossref
-
Abstract
-
The trans-membrane transport of hydrocarbons is an important
and complex aspect of the process of biodegradation
of hydrocarbons by microorganisms. The mechanism of
transport of 14C n-octadecane by Pseudomonas sp. DG17,
an alkane-degrading bacterium, was studied by the addition
of ATP inhibitors and different substrate concentrations.
When the concentration of n-octadecane was higher than
4.54 μmol/L, the transport of 14C n-octadecane was driven
by a facilitated passive mechanism following the intra/extra
substrate concentration gradient. However, when the cells
were grown with a low concentration of the substrate, the
cellular accumulation of n-octadecane, an energy-dependent
process, was dramatically decreased by the presence of ATP
inhibitors, and n-octadecane accumulation continually increased
against its concentration gradient. Furthermore, the
presence of non-labeled alkanes blocked 14C n-octadecane
transport only in the induced cells, and the trans-membrane
transport of n-octadecane was specific with an apparent
dissociation constant Kt of 11.27 μmol/L and Vmax of 0.96
μmol/min/mg protein. The results indicated that the transmembrane
transport of n-octadecane by Pseudomonas sp.
DG17 was related to the substrate concentration and ATP.
-
Citations
Citations to this article as recorded by

- Combined thermochemical-biotechnological approach for the valorization of polyolefins into polyhydroxyalkanoates: Development of an integrated bioconversion process by microbial consortia
Passanun Lomwongsopon, Tanja Narancic, Reinhard Wimmer, Cristiano Varrone
Chemosphere.2024; 367: 143671. CrossRef - Current paradigms and future challenges in harnessing gut bacterial symbionts of insects for biodegradation of plastic wastes
Mudasir A. Dar, Rongrong Xie, Hossain M. Zabed, Kiran D. Pawar, Neeraja P. Dhole, Jianzhong Sun
Insect Science.2024;[Epub] CrossRef - Recent advances in biodegradation of emerging contaminants - microplastics (MPs): Feasibility, mechanism, and future prospects
Shuo Li, Yalun Yang, Shanshan Yang, Heshan Zheng, Yongjie Zheng, Jun M, Dillirani Nagarajan, Sunita Varjani, Jo-Shu Chang
Chemosphere.2023; 331: 138776. CrossRef - Sorption of petroleum hydrocarbons before transmembrane transport and the structure, mechanisms and functional regulation of microbial membrane transport systems
Jieting Wu, Ruofan Zhao, Lei Zhao, Qi Xu, Jin Lv, Fang Ma
Journal of Hazardous Materials.2023; 441: 129963. CrossRef - Bioaugmentation of diesel-contaminated soil with Pseudomonas sp. DTF1
H. Yang, G. Kim, K.-S. Cho
International Journal of Environmental Science and Technology.2023; 20(11): 12499. CrossRef - Potential Egyptian bacterial consortium for oil spill treatment: A laboratory simulation
Aya Elkemary, Samia S. Abouelkheir, Mostafa AbdelHakim, Soraya A. Sabry, Hanan A. Ghozlan
Case Studies in Chemical and Environmental Engineering.2023; 7: 100278. CrossRef - A review on biosurfactant producing bacteria for remediation of petroleum contaminated soils
Diksha Sah, J. P. N. Rai, Ankita Ghosh, Moumita Chakraborty
3 Biotech.2022;[Epub] CrossRef - Atlas of the microbial degradation of fluorinated pesticides
Diogo A. M. Alexandrino, Ana P. Mucha, C. Marisa R. Almeida, Maria F. Carvalho
Critical Reviews in Biotechnology.2022; 42(7): 991. CrossRef - Biological Process of Alkane Degradation by Gordonia sihwaniensis
Yinsong Liu, Jingchun Wu, Yikun Liu, Xiaolin Wu
ACS Omega.2022; 7(1): 55. CrossRef - Efficient biodesulfurization of diesel oil by Gordonia sp. SC-10 with highly hydrophobic cell surfaces
Shuiquan Chen, Meng Zang, Lin Li, Juntao Chen, Qiyou Liu, Xiwen Feng, Shuo Sun, Chuanwei Zang, Chaocheng Zhao
Biochemical Engineering Journal.2021; 174: 108094. CrossRef - Plastic biodegradation: Frontline microbes and their enzymes
Ayodeji Amobonye, Prashant Bhagwat, Suren Singh, Santhosh Pillai
Science of The Total Environment.2021; 759: 143536. CrossRef - Substrate regulation on co-metabolic degradation of β-cypermethrin by Bacillus licheniformis B-1
Jiayuan Zhao, Dongying Jia, Juan Du, Yuanlong Chi, Kai Yao
AMB Express.2019;[Epub] CrossRef - Biodegradation of marine oil spills in the Arctic with a Greenland perspective
Leendert Vergeynst, Susse Wegeberg, Jens Aamand, Pia Lassen, Ulrich Gosewinkel, Janne Fritt-Rasmussen, Kim Gustavson, Anders Mosbech
Science of The Total Environment.2018; 626: 1243. CrossRef - Bacterial community succession and degradation patterns of hydrocarbons in seawater at low temperature
Leendert Vergeynst, Kasper U. Kjeldsen, Pia Lassen, Søren Rysgaard
Journal of Hazardous Materials.2018; 353: 127. CrossRef - Biodegradation of endocrine‐disrupting compounds by ligninolytic fungi: mechanisms involved in the degradation
Tomáš Cajthaml
Environmental Microbiology.2015; 17(12): 4822. CrossRef - A Comprehensive Review of Aliphatic Hydrocarbon Biodegradation by Bacteria
Firouz Abbasian, Robin Lockington, Megharaj Mallavarapu, Ravi Naidu
Applied Biochemistry and Biotechnology.2015; 176(3): 670. CrossRef - Uptake and trans-membrane transport of petroleum hydrocarbons by microorganisms
Fei Hua, Hong Qi Wang
Biotechnology & Biotechnological Equipment.2014; 28(2): 165. CrossRef
- A Putative APSES Transcription Factor Is Necessary for Normal Growth and Development of Aspergillus nidulans
-
Ji-Yeon Lee , Lee-Han Kim , Ha-Eun Kim , Jae-Sin Park , Kap-Hoon Han , Dong-Min Han
-
J. Microbiol. 2013;51(6):800-806. Published online December 19, 2013
-
DOI: https://doi.org/10.1007/s12275-013-3100-2
-
-
46
View
-
0
Download
-
13
Crossref
-
Abstract
-
The nsdD gene encoding a GATA type transcription factor
positively controls sexual development in Aspergillus nidulans.
According to microarray data, 20 genes that were upregulated
by deleting nsdD during various life cycle stages were
randomly selected and deleted for functional analysis. None
of the mutants showed apparent changes in growth or development
compared with those of the wild-type except the
AN3154 gene that encodes a putative APSES transcription
factor and is an ortholog of Saccharomyces cerevisiae swi4.
Deleting AN3154 resulted in retarded growth and development,
and the gene was named rgdA (retared growth and
development). The rgdA deletion mutant developed a reduced
number of conidia even under favorable conditions for asexual
development. The retarded growth and development was
partially suppressed by the veA1 mutation. The conidial heads
of the mutant aborted, showing reduced and irregular shaped
phialides. Fruiting body development was delayed compared
with that in the wild-type. The mutant did not respond to
various nutritional or environmental factors that affected the
development patterns. The rgdA gene was expressed at low
levels throughout the life cycle and was not significantly affected
by several regulators of sexual and asexual development
such as nsdD, veA, stuA, or brlA. However, the rgdA gene
affected brlA and abaA expression, which function as key
regulators of asexual sporulation, suggesting that rgdA functions
upstream of those genes.
-
Citations
Citations to this article as recorded by

- Putative APSES family transcription factor mbp1 plays an essential role in regulating cell wall synthesis in the agaricomycete Pleurotus ostreatus
Hayase Kojima, Moriyuki Kawauchi, Yuitsu Otsuka, Kim Schiphof, Kenya Tsuji, Akira Yoshimi, Chihiro Tanaka, Shigekazu Yano, Takehito Nakazawa, Yoichi Honda
Fungal Genetics and Biology.2024; 175: 103936. CrossRef - Regulators of the Asexual Life Cycle of Aspergillus nidulans
Ye-Eun Son, Jae-Hyuk Yu, Hee-Soo Park
Cells.2023; 12(11): 1544. CrossRef - Characterization of the mbsA Gene Encoding a Putative APSES Transcription Factor in Aspergillus fumigatus
Yong-Ho Choi, Sang-Cheol Jun, Min-Woo Lee, Jae-Hyuk Yu, Kwang-Soo Shin
International Journal of Molecular Sciences.2021; 22(7): 3777. CrossRef - The Putative APSES Transcription Factor RgdA Governs Growth, Development, Toxigenesis, and Virulence in Aspergillus fumigatus
Sang-Cheol Jun, Yong-Ho Choi, Min-Woo Lee, Jae-Hyuk Yu, Kwang-Soo Shin, Aaron P. Mitchell
mSphere.2020;[Epub] CrossRef - Analogous and Diverse Functions of APSES-Type Transcription Factors in the Morphogenesis of the Entomopathogenic Fungus Metarhizium rileyi
Caiyan Xin, Jinping Zhang, Siji Nian, Guangxi Wang, Zhongkang Wang, Zhangyong Song, Guangwei Ren, Ning-Yi Zhou
Applied and Environmental Microbiology.2020;[Epub] CrossRef - Distribution, evolution and expression ofGATA-TFsprovide new insights into their functions in light response and fruiting body development ofTolypocladium guangdongense
Chenghua Zhang, Gangzheng Wang, Wangqiu Deng, Taihui Li
PeerJ.2020; 8: e9784. CrossRef - Characterization of the APSES-family transcriptional regulators of Histoplasma capsulatum
Larissa V G Longo, Stephanie C Ray, Rosana Puccia, Chad A Rappleye
FEMS Yeast Research.2018;[Epub] CrossRef - Essential APSES Transcription Factors for Mycotoxin Synthesis, Fungal Development, and Pathogenicity in Aspergillus flavus
Guangshan Yao, Feng Zhang, Xinyi Nie, Xiuna Wang, Jun Yuan, Zhenhong Zhuang, Shihua Wang
Frontiers in Microbiology.2017;[Epub] CrossRef - Characterizing the nuclear proteome of Paracoccidioides spp.
Lucas Nojosa Oliveira, Luciana Casaletti, Sônia Nair Báo, Clayton Luiz Borges, Patrícia de Sousa Lima, Célia Maria de Almeida Soares
Fungal Biology.2016; 120(10): 1209. CrossRef - Isolation and Characterization of Two Methyltransferase Genes, AfuvipB and AfuvipC in Aspergillus fumigatus
Mohammed A. Abdo Elgabbar, Kap-Hoon Han
The Korean Journal of Mycology.2015; 43(1): 33. CrossRef - Depletion of ε-COP in the COPI Vesicular Coat Reduces Cleistothecium Production inAspergillus nidulans
Eun-Hye Kang, Eun-Jung Song, Jun Ho Kook, Hwan-Hee Lee, Bo-Ri Jeong, Hee-Moon Park
Mycobiology.2015; 43(1): 31. CrossRef - FgFlbD regulates hyphal differentiation required for sexual and asexual reproduction in the ascomycete fungus Fusarium graminearum
Hokyoung Son, Myung-Gu Kim, Suhn-Kee Chae, Yin-Won Lee
Journal of Microbiology.2014; 52(11): 930. CrossRef - Transcriptional regulation of fksA, a β-1,3-glucan synthase gene, by the APSES protein StuA during Aspergillus nidulans development
Bum-Chan Park, Yun-Hee Park, Soohyun Yi, Yu Kyung Choi, Eun-Hye Kang, Hee-Moon Park
Journal of Microbiology.2014; 52(11): 940. CrossRef
- Isolation and Functional Characterization of a Delta 6-Desaturase Gene from the Pike Eel (Muraenesox cinereus)
-
Sun Hee Kim , Kyung Hee Roh , Jung-Bong Kim , Kwang-Soo Kim , Nam Shin Kim , Hyun Uk Kim , Kyeong-Ryeol Lee , Jong-Sug Park , Jong-Bum Kim
-
J. Microbiol. 2013;51(6):807-813. Published online October 5, 2013
-
DOI: https://doi.org/10.1007/s12275-013-3144-3
-
-
47
View
-
0
Download
-
9
Crossref
-
Abstract
-
Stearidonic acid (STA; 18:4n-3) and γ-linolenic acid (GLA;
18:3n-6) are significant intermediates in the biosynthetic pathway
for the very-long-chain polyunsaturated fatty acids of
eicosapentaenoic acid (EPA; 20:5n-3) and arachidonic acid
(ARA; 20:4n-6), respectively. To develop a sustainable system
for the production of dietary polyunsaturated fatty acids,
we focused on the action of the enzyme delta 6-desaturase
(D6DES) on the essential acids, linoleic acid (LA; 18:2n-6)
and α-linolenic acid (ALA; 18:3n-3). A 1,335-bp full-length
cDNA encoding D6DES (McD6DES) was cloned from Muraenesox
cinereus using degenerate PCR and RACE-PCR
methods
. To investigate the enzymatic activity of McD6DES
in the production of n-6 and n-3 fatty acids, a recombinant
plasmid expressing McD6DES (pYES-McD6DES) was transformed
into and expressed in Saccharomyces cerevisiae. The
exogenously expressed McD6DES produced GLA and STA
at conversion rates of 14.2% and 45.9%, respectively, from
the exogenous LA and ALA substrates. These results indicate
that McD6DES is essentially a delta 6-desaturase involved
in very-long-chain polyunsaturated fatty acid synthesis.
-
Citations
Citations to this article as recorded by

- Regulation of long-chain polyunsaturated fatty acid biosynthesis in teleost fish
Dizhi Xie, Cuiying Chen, Yewei Dong, Cuihong You, Shuqi Wang, Óscar Monroig, Douglas R. Tocher, Yuanyou Li
Progress in Lipid Research.2021; 82: 101095. CrossRef - Comparative and functional analysis of desaturase FADS1 (∆5) and FADS2 (∆6) orthologues of marine organisms
Crisalejandra Rivera-Pérez, Fausto Valenzuela-Quiñonez, Javier Caraveo-Patiño
Comparative Biochemistry and Physiology Part D: Genomics and Proteomics.2020; 35: 100704. CrossRef - Δ6 fatty acid desaturases in polyunsaturated fatty acid biosynthesis: insights into the evolution, function with substrate specificities and biotechnological use
Jie Cui, Haiqin Chen, Xin Tang, Jianxin Zhao, Hao Zhang, Yong Q. Chen, Wei Chen
Applied Microbiology and Biotechnology.2020; 104(23): 9947. CrossRef - In Silico Structural Studies and Molecular Docking Analysis of Delta6-desaturase in HUFA Biosynthetic Pathway
Suvra Roy, Hirak jyoti Chakraborty, Vikash Kumar, B K Behera, R S Rana, Gireesh Babu
Animal Biotechnology.2018; 29(3): 161. CrossRef - Changes in Plasma and Tissue Long-Chain Polyunsaturated Fatty Acid (LC-PUFA) Content in the Eel Anguilla japonica After External and Internal Osmotic Stress
Qinghao Zhang, Marty K. S. Wong, Yiqi Li, Yuanyou Li, Yoshio Takei
Zoological Science.2017; 34(5): 429. CrossRef - Effect of low temperature on highly unsaturated fatty acid biosynthesis in activated sludge
Su He, Li-li Ding, Ke Xu, Jin-ju Geng, Hong-qiang Ren
Bioresource Technology.2016; 211: 494. CrossRef - Metabolic engineering to produce γ-linolenic acid in Brassica napus using a Δ6-desaturase from pike eel
Sun Hee Kim, Kyung Hee Roh, Kyeong-Ryeol Lee, Han-Chul Kang, Hyun Uk Kim, Jong Bum Kim
Plant Biotechnology Reports.2016; 10(6): 475. CrossRef - Heterologous Reconstitution of Omega-3 Polyunsaturated Fatty Acids inArabidopsis
Sun Hee Kim, Kyung Hee Roh, Jong-Sug Park, Kwang-Soo Kim, Hyun Uk Kim, Kyeong-Ryeol Lee, Han-Chul Kang, Jong-Bum Kim
BioMed Research International.2015; 2015: 1. CrossRef - Coexpression of multiple genes reconstitutes two pathways of very long-chain polyunsaturated fatty acid biosynthesis in Pichia pastoris
Sun Hee Kim, Kyung Hee Roh, Kwang-Soo Kim, Hyun Uk Kim, Kyeong-Ryeol Lee, Han-Chul Kang, Jong-Bum Kim
Biotechnology Letters.2014; 36(9): 1843. CrossRef
Research Support, U.S. Gov't, Non-P.H.S.
- Structure and Function of the Mating-type Locus in the Homothallic Ascomycete, Didymella zeae-maydis
-
Sung-Hwan Yun , Olen C. Yoder , B. Gillian Turgeon
-
J. Microbiol. 2013;51(6):814-820. Published online December 19, 2013
-
DOI: https://doi.org/10.1007/s12275-013-3465-2
-
-
47
View
-
0
Download
-
12
Crossref
-
Abstract
-
Homothallic Didymella zeae-maydis undergoes sexual reproduction
by selfing. Sequence analysis of the mating type
(MAT) locus from this fungus revealed that MAT carries
both MAT1-1-1 and MAT1-2-1 genes found in heterothallic
Dothideomycetes, separated by ~1.0 kb of noncoding DNA.
To understand the mechanistic basis of homothallism in D.
zeae-maydis, each of the MAT genes was deleted and the effects
on selfing and on ability to cross in a heterothallic manner
were determined. The strain carrying an intact MAT1-1-1
but defective MAT1-2-1 gene (MAT1-1-1;ΔMAT1-2-1) was
self-sterile, however strains carrying an intact MAT1-2-1 but
defective MAT1-1-1 gene (ΔMAT1-1-1;MAT1-2-1), when
selfed, showed delayed production of a few ascospores.
Attempts to cross the two MAT deletion strains yielded fewer
ΔMAT1-1-1;MAT1-2-1 than MAT1-1-1;ΔMAT1-2-1 progeny
and very few ascospores overall compared to WT selfs. This
study demonstrates that, as in the other homothallic Dothideomycetes,
both MAT genes are required for full fertility,
but that, in contrast to other cases, the presence of a single
MAT1-2-1 gene can induce homothallism, albeit inefficiently,
in D. zeae-maydis.
-
Citations
Citations to this article as recorded by

- Structure and number of mating pheromone genes is closely linked to sexual reproductive strategy in Huntiella
Andi M. Wilson, Michael J. Wingfield, Brenda D. Wingfield
BMC Genomics.2023;[Epub] CrossRef - The Role of Chromatin and Transcriptional Control in the Formation of Sexual Fruiting Bodies in Fungi
Minou Nowrousian
Microbiology and Molecular Biology Reviews.2022;[Epub] CrossRef - First Characterisation of the Phoma Species Complex on Maize Leaves in Central Europe
Lucia Ramos Romero, Dagmar Tacke, Birger Koopmann, Andreas von Tiedemann
Pathogens.2021; 10(9): 1216. CrossRef - Integrative Activity of Mating Loci, Environmentally Responsive Genes, and Secondary Metabolism Pathways during Sexual Development of Chaetomium globosum
Zheng Wang, Francesc López-Giráldez, Junrui Wang, Frances Trail, Jeffrey P. Townsend, Alexander Idnurm
mBio.2019;[Epub] CrossRef - Transition from heterothallism to homothallism is hypothesised to have facilitated speciation among emerging Botryosphaeriaceae wheat-pathogens
Elisha Thynne, Megan C. McDonald, Peter S. Solomon
Fungal Genetics and Biology.2017; 109: 36. CrossRef - Molecular manipulation of the mating-type system and development of a new approach for characterizing pathogen virulence in Pyrenophora tritici-repentis
Gazala Ameen, Gayan Kariyawasam, Gongjun Shi, Timothy L. Friesen, Justin D. Faris, Shaukat Ali, Jack B. Rasmussen, Zhaohui Liu
Fungal Genetics and Biology.2017; 109: 16. CrossRef - Genetic Dissection of Sexual Reproduction in a Primary Homothallic Basidiomycete
Márcia David-Palma, José Paulo Sampaio, Paula Gonçalves, Joseph Heitman
PLOS Genetics.2016; 12(6): e1006110. CrossRef - Mating-Type Gene Structure and Spatial Distribution ofDidymella tanacetiin Pyrethrum Fields
Tamieka L. Pearce, Jason B. Scott, Frank S. Hay, Sarah J. Pethybridge
Phytopathology®.2016; 106(12): 1521. CrossRef -
Fungal Sex: The
Ascomycota
Richard J. Bennett, B. Gillian Turgeon, Joseph Heitman
Microbiology Spectrum.2016;[Epub] CrossRef - Characterization and distribution of mating-type genes of the turfgrass pathogen Sclerotinia homoeocarpa on a global scale
Alexander I. Putman, Lane P. Tredway, Ignazio Carbone
Fungal Genetics and Biology.2015; 81: 25. CrossRef - Unisexual versus bisexual mating in Cryptococcus neoformans: Consequences and biological impacts
Ci Fu, Sheng Sun, R.B. Billmyre, Kevin C. Roach, Joseph Heitman
Fungal Genetics and Biology.2015; 78: 65. CrossRef - Pondering Mating: Pneumocystis jirovecii, the Human Lung Pathogen, Selfs without Mating Type Switching, in Contrast to Its Close Relative Schizosaccharomyces pombe
Patrik Inderbitzin, B. Gillian Turgeon
mBio.2015;[Epub] CrossRef