Journal of Microbiology

Review

SARS-CoV-2-mediated evasion strategies for antiviral interferon pathways: Soo-Jin Oh , Ok Sarah Shin; J. Microbiol. 2022;60(3):290-299. Published online February 5, 2022; DOI: https://doi.org/10.1007/s12275-022-1525-1

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With global expansion of the COVID-19 pandemic and the emergence of new variants, extensive efforts have been made to develop highly effective antiviral drugs and vaccines against SARS-CoV-2. The interactions of coronaviruses with host antiviral interferon pathways ultimately determine successful viral replication and SARS-CoV-2-induced pathogenesis. Innate immune receptors play an essential role in host defense against SARS-CoV-2 via the induction of IFN production and signaling. Here, we summarize the recent advances in innate immune sensing mechanisms of SARS-CoV-2 and various strategies by which SARS-CoV-2 antagonizes antiviral innate immune signaling pathways, with a particular focus on mechanisms utilized by multiple SARS-CoV-2 proteins to evade interferon induction and signaling in host cell. Understanding the underlying immune evasion mechanisms of SARS-CoV-2 is essential for the improvement of vaccines and therapeutic strategies.

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Does SARS-CoV-2 Induce IgG4 Synthesis to Evade the Immune System?
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Journal Articles

Regulator of ribonuclease activity modulates the pathogenicity of Vibrio vulnificus: Jaejin Lee , Eunkyoung Shin , Jaeyeong Park , Minho Lee , Kangseok Lee; J. Microbiol. 2021;59(12):1133-1141. Published online November 9, 2021; DOI: https://doi.org/10.1007/s12275-021-1518-5

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Abstract

RraA, a protein regulator of RNase E activity, plays a unique role in modulating the mRNA abundance in Escherichia coli. The marine pathogenic bacterium Vibrio vulnificus also possesses homologs of RNase E (VvRNase E) and RraA (VvRraA1 and VvRraA2). However, their physiological roles have not yet been investigated. In this study, we demonstrated that VvRraA1 expression levels affect the pathogenicity of V. vulnificus. Compared to the wild-type strain, the VvrraA1-deleted strain (ΔVvrraA1) showed decreased motility, invasiveness, biofilm formation ability as well as virulence in mice; these phenotypic changes of ΔVvrraA1 were restored by the exogenous expression of VvrraA1. Transcriptomic analysis indicated that VvRraA1 expression levels affect the abundance of a large number of mRNA species. Among them, the halflives of mRNA species encoding virulence factors (e.g., smcR and htpG) that have been previously shown to affect VvrraA1 expression-dependent phenotypes were positively correlated with VvrraA1 expression levels. These findings suggest that VvRraA1 modulates the pathogenicity of V. vulnificus by regulating the abundance of a subset of mRNA species.

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Identification of the global regulatory roles of RraA via the integrative transcriptome and proteome in Vibrio alginolyticus
Huizhen Chen, Qian Gao, Bing Liu, Ying Zhang, Jianxiang Fang, Songbiao Wang, Youqi Chen, Chang Chen, Nicolas E. Buchler
mSphere.2024;[Epub] CrossRef
Comparative Transcriptomic Analysis of Flagellar-Associated Genes in Salmonella Typhimurium and Its rnc Mutant
Seungmok Han, Ji-Won Byun, Minho Lee
Journal of Microbiology.2024; 62(1): 33. CrossRef
Eco-Evolutionary Drivers of Vibrio parahaemolyticus Sequence Type 3 Expansion: Retrospective Machine Learning Approach
Amy Marie Campbell, Chris Hauton, Ronny van Aerle, Jaime Martinez-Urtaza
JMIR Bioinformatics and Biotechnology.2024; 5: e62747. CrossRef
Relaxed Cleavage Specificity of Hyperactive Variants of Escherichia coli RNase E on RNA I
Dayeong Bae, Hana Hyeon, Eunkyoung Shin, Ji-Hyun Yeom, Kangseok Lee
Journal of Microbiology.2023; 61(2): 211. CrossRef
Regulator of RNase E activity modulates the pathogenicity of Salmonella Typhimurium
Jaejin Lee, Eunkyoung Shin, Ji-Hyun Yeom, Jaeyoung Park, Sunwoo Kim, Minho Lee, Kangseok Lee
Microbial Pathogenesis.2022; 165: 105460. CrossRef

The comparison of microbial communities in thyroid tissues from thyroid carcinoma patients: Chen-Jian Liu , Si-Qian Chen , Si-Yao Zhang , Jia-Lun Wang , Xiao-Dan Tang , Kun-Xian Yang , Xiao-Ran Li; J. Microbiol. 2021;59(11):988-1001. Published online October 6, 2021; DOI: https://doi.org/10.1007/s12275-021-1271-9

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Abstract

Thyroid carcinoma is a common endocrine organ cancer associated with abnormal hormone secretion, leading to the disorder of metabolism. The intestinal microbiota is vital to maintain digestive and immunologic homeostasis. The relevant information of the microbial community in the gut and thyroid, including composition, structure, and relationship, is unclear in thyroid carcinoma patients. A total of 93 samples from 25 patients were included in this study. The results showed that microbial communities existed in thyroid tissue; gut and thyroid had high abundance of facultative anaerobes from the Proteobacteria phyla. The microbial metabolism from the thyroid and gut may be affected by the thyroid carcinoma cells. The cooccurrence network showed that the margins of different thyroid tissues were unique areas with more competition; the stabilization of microcommunities from tissue and stool may be maintained by several clusters of species that may execute different vital metabolism processes dominantly that are attributed to the microenvironment of cancer.

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Modulation of Intestinal Flora: a Novel Immunotherapeutic Approach for Enhancing Thyroid Cancer Treatment
Weiqiang Huang, Tao Jiang, Jiaxuan He, Jing Ruan, Baihui Wu, Runchao Tao, Peiye Xu, Yongpan Wang, Rongbing Chen, Hanbing Wang, Qinsi Yang, Kun Zhang, Libo Jin, Da Sun, Jinfeng You
Probiotics and Antimicrobial Proteins.2025;[Epub] CrossRef
Recent advances in gut microbiota and thyroid disease: pathogenesis and therapeutics in autoimmune, neoplastic, and nodular conditions
Lihua Fang, Jie Ning
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Causal relationship of genetically predicted gut microbiota with thyroid cancer: a bidirectional two-sample mendelian randomization study
Xiaohe Sun, Shuai Chen, Shuoqi Zhao, Jingwen Wang, Haibo Cheng
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Hanieh Ataollahi, Mehdi Hedayati, Noosha Zia-Jahromi, Maryam Daneshpour, Seyed Davar Siadat
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Clinical potential of microbiota in thyroid cancer therapy
Zilan Xie, Jiating Zhou, Xuan Zhang, Zhi Li
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Shuang Yu, Yanqiang Ding, Xuejie Wang, Siu Kin Ng, Siting Cao, Weixin Liu, Zhuming Guo, Yubin Xie, Shubin Hong, Lixia Xu, Xiaoxing Li, Jie Li, Weiming Lv, Sui Peng, Yanbing Li, Joseph J.Y. Sung, Jun Yu, Haipeng Xiao
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Zheng Quan, Xiaoyu Zhang, Shilong Wang, Yong Meng
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Francesca Gorini, Alessandro Tonacci
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Human cytomegalovirus IE86 protein aa 136–289 mediates STING degradation and blocks the cGAS-STING pathway: Jun-Kyu Lee , Jung-Eun Kim , Bang Ju Park , Yoon-Jae Song; J. Microbiol. 2020;58(1):54-60. Published online January 2, 2020; DOI: https://doi.org/10.1007/s12275-020-9577-6

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Abstract

We previously reported that human cytomegalovirus (HCMV) 86 kDa immediate-early 2 gene product (IE86) promotes proteasome-dependent degradation of STING. In the present study, we determined the specific residues of IE86 responsible for STING degradation using a STING-firefly luciferase fusion protein expression system for quantitative measurement of STING protein levels. IE86 amino acids (aa) 136–289 were sufficient to promote STING degradation and further induced down-regulation of 2􍿁3􍿁-cyclic GMP-AMP (cGAMP)-mediated IFN-β promoter activation. Interestingly, transactivation domains (TAD) of the IE86 protein located at the N- and C-termini were required for down-regulation of Toll/interleukin-1 receptor (TIR) domain-containing adaptor- inducing interferon β (IFN-β) (TRIF)-mediated IFN-β- and p65/RelA-induced NF-κB-dependent promoter activation while amino acids (aa) 136–289 had no significant effects. Our collective data suggest that the IE86 protein utilizes the aa 136–289 region to promote STING degradation and inhibit the cGAS-STING pathway.

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Reviews

Minireview] The molecular mechanism of azole resistance in Aspergillus fumigatus: from bedside to bench and back: Xiaolei Wei , Yuanwei Zhang Zhang , Ling Lu; J. Microbiol. 2015;53(2):91-99. Published online January 28, 2015; DOI: https://doi.org/10.1007/s12275-015-5014-7

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Abstract

The growing use of immunosuppressive therapies has resulted in a dramatic increased incidence of invasive fungal infections (IFIs) caused by Aspergillus fumigatus, a common pathogen, and is also associated with a high mortality rate. Azoles are the primary guideline-recommended therapy agents for first-line treatment and prevention of IFIs. However, increased azole usage in medicinal and agricultural settings has caused azole-resistant isolates to repeatedly emerge in the environment, resulting in a significant threat to human health. In this review, we present and summarize current research on the resistance mechanisms of azoles in A. fumigatus as well as efficient susceptibility testing methods. Moreover, we analyze and discuss the putative clinical (bedside) indication of these findings from bench work.

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Minireview] Loop-mediated isothermal amplification (LAMP): principle, features, and future prospects: Tsugunori Notomi , Yasuyoshi Mori , Norihiro Tomita , Hidetoshi Kanda; J. Microbiol. 2015;53(1):1-5. Published online January 4, 2015; DOI: https://doi.org/10.1007/s12275-015-4656-9

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Abstract

Loop-mediated isothermal amplification (LAMP), a newly developed gene amplification method, combines rapidity, simplicity, and high specificity. Several tests have been developed based on this method, and simplicity is maintained throughout all steps, from extraction of nucleic acids to detection of amplification. In the LAMP reaction, samples are amplified at a fixed temperature through a repetition of two types of elongation reactions occurring at the loop regions: self-elongation of templates from the stem loop structure formed at the 3'-terminal and the binding and elongation of new primers to the loop region. The LAMP reaction has a wide range of possible applications, including point-of-care testing, genetic testing in resource-poor settings (such as in developing countries), and rapid testing of food products and environmental samples.

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Alzheimer's Disease: A Silent Pandemic - A Systematic Review on the Situation and Patent Landscape of the Diagnosis
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Preliminary establishment and validation of a loop-mediated isothermal amplification assay for convenient screening of 13 types of high-risk human papillomaviruses in cervical secretions
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Single- and Two-Stage, Closed-Tube, Point-of-Care, Molecular Detection of SARS-CoV-2
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Automated parasitological diagnosis in clinical microbiology laboratories
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Scientific Reports.2021;[Epub] CrossRef
Development of a simple and accurate molecular tool for Spodoptera frugiperda species identification using LAMP
Juil Kim, Hwa Y Nam, Min Kwon, Hyun J Kim, Hwi J Yi, Sabine Haenniger, Melanie Unbehend, David G Heckel
Pest Management Science.2021; 77(7): 3145. CrossRef
Loop-Mediated Isothermal Amplification vs. Guobiao Standards Method for Detection of Salmonella in Yoghurt and Yoghurt-Based Drinks
Jianwei Huo, Yan Huang, Raj Rajagopal
International Journal of Dairy Science.2021; 16(3): 90. CrossRef
Ultrastaging Using Ex Vivo Sentinel Lymph Node Mapping and One-Step Nucleic Acid Amplification (OSNA) in Gastric Cancer: Experiences of a European Center
Bruno Märkl, Bianca Grosser, Kerstin Bauer, Dmytro Vlasenko, Gerhard Schenkirsch, Andreas Probst, Bernadette Kriening
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Assessing the Use of DNA Detection Platforms Combined with Passive Wind-Powered Spore Traps for Early Surveillance of Potato and Tomato Late Blight in Canada
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Plant Disease.2021; 105(11): 3610. CrossRef
Evaluation of a commercial loop-mediated isothermal amplification assay, 3MTM Molecular Detection Assay 2 – Campylobacter, for the detection of Campylobacter from poultry matrices
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British Poultry Science.2021; 62(3): 404. CrossRef
Honey bee sHSP are responsive to diverse proteostatic stresses and potentially promising biomarkers of honey bee stress
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Scientific Reports.2021;[Epub] CrossRef
WarmStart colorimetric RT‐LAMP for the rapid, sensitive and specific detection of Enteroviruses A–D targeting the 5′UTR region
M. Daskou, T.G. Dimitriou, D.S. Alexopoulou, D. Tsakogiannis, G.D. Amoutzias, D. Mossialos, Z. Kyriakopoulou, P. Markoulatos
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Viral Respiratory Infections: New Tools for a Rapid Diagnosis
Luna Colagrossi, Giordana Mattana, Livia Piccioni, Valeria Cento, Carlo Federico Perno
Seminars in Respiratory and Critical Care Medicine.2021; 42(06): 747. CrossRef
Total microfluidic platform strategy for liquid biopsy
Hoyoon Lee, Wonhwi Na, Sehyun Shin
Journal of Cellular Biotechnology.2021; 6(2): 113. CrossRef
Virus recognition with terahertz radiation: drawbacks and potentialities
Marta Di Fabrizio, Stefano Lupi, Annalisa D’Arco
Journal of Physics: Photonics.2021; 3(3): 032001. CrossRef
CRISPR technology incorporating amplification strategies: molecular assays for nucleic acids, proteins, and small molecules
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Chemical Science.2021; 12(13): 4683. CrossRef
Utilizing loop‐mediated isothermal amplification to detect the presence of Escherichia coli: An inquiry‐driven undergraduate laboratory module
Brandon G. Roy, Eric Ryndock, Courtney M. Lappas
Biochemistry and Molecular Biology Education.2021; 49(3): 475. CrossRef
A colorimetric IsoPCR for the rapid and sensitive visual detection of high-risk HPV16 in clinical samples with hydroxynaphthol blue
M. Daskou, D. Tsakogiannis, D.S. Alexopoulou, T.G Dimitriou, D. Mossialos, G.D Amoutzias, C. Kottaridi, P. Markoulatos
Journal of Virological Methods.2021; 290: 114072. CrossRef
Hand-Powered Microfluidics for Parallel Droplet Digital Loop-Mediated Isothermal Amplification Assays
Hao Yuan, Jingxuan Tian, Youchuang Chao, Yuh-Shiuan Chien, Ren-Hao Luo, Jun-Yu Guo, Shanshan Li, Yi-Ju Chou, Ho Cheung Shum, Chien-Fu Chen
ACS Sensors.2021; 6(8): 2868. CrossRef
Loop‐mediated isothermal amplification for the detection of SARS‐CoV‐2 in saliva
Monika Janíková, Július Hodosy, Peter Boor, Boris Klempa, Peter Celec
Microbial Biotechnology.2021; 14(1): 307. CrossRef
Electrogenerated Chemiluminescence Biosensor Based on Functionalized Two-Dimensional Metal–Organic Frameworks for Bacterial Detection and Antimicrobial Susceptibility Assays
Lina Sun, Yu Chen, Yuhong Duan, Fen Ma
ACS Applied Materials & Interfaces.2021; 13(32): 38923. CrossRef
Nucleic Acid-Based Diagnostic Tests for the Detection SARS-CoV-2: An Update
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Diagnostics.2021; 11(1): 53. CrossRef
Use of some cost-effective technologies for a routine clinical pathology laboratory
Mercedes Vázquez, Laura Anfossi, Hadar Ben-Yoav, Lorena Diéguez, Thomas Karopka, Bartolomeo Della Ventura, Sara Abalde-Cela, Antonio Minopoli, Fabio Di Nardo, Vikas Kumar Shukla, Alexandra Teixeira, Asta Tvarijonaviciute, Lorena Franco-Martínez
Lab on a Chip.2021; 21(22): 4330. CrossRef
Microfluidic devices for multiplexed detection of foodborne pathogens
Xiaoying Han, Yuanhui Liu, Juxin Yin, Min Yue, Ying Mu
Food Research International.2021; 143: 110246. CrossRef
Rapid and Sensitive Detection of the Colistin Resistance Gene mcr-3 by Loop-Mediated Isothermal Amplification and Visual Inspection
Zhihai Liu, Changmei Guo, Yaru Zhang, Li Zhao, Zhihui Hao
Microbial Drug Resistance.2021; 27(10): 1328. CrossRef
Primers and visualization of LAMP: A rapid molecular identification method for Liposcelis entomophila (Enderlein) (Psocodea: Liposcelididae)
Lingyu Zeng, Yun Su, Vaclav Stejskal, George Opit, Radek Aulicky, Zhihong Li
Journal of Stored Products Research.2021; 93: 101855. CrossRef
Comparative evaluation of lateral flow immunoassays, LAMP, and quantitative PCR for diagnosis of fire blight in apple orchards
Jugpreet Singh, Della Cobb-Smith, Elizabeth Higgins, Awais Khan
Journal of Plant Pathology.2021; 103(S1): 131. CrossRef
Rapid detection ofmcyGgene of microcystins producing cyanobacteria in water samples by recombinase polymerase amplification combined with lateral flow strips
Jingjing Li, Mingbao Feng, Xin Yu
Journal of Water and Health.2021; 19(6): 907. CrossRef
Real-time fluorometric and end-point colorimetric isothermal assays for detection of equine pathogens C. psittaci and equine herpes virus 1: validation, comparison and application at the point of care
Martina Jelocnik, Sharon Nyari, Susan Anstey, Nicole Playford, Tamieka A. Fraser, Keith Mitchell, Anna Blishen, Nina M. Pollak, Joan Carrick, Catherine Chicken, Cheryl Jenkins
BMC Veterinary Research.2021;[Epub] CrossRef
Rapid and selective detection of macrocyclic trichothecene producing Stachybotrys chartarum strains by loop-mediated isothermal amplification (LAMP)
Johannes Köck, Christoph Gottschalk, Sebastian Ulrich, Karin Schwaiger, Manfred Gareis, Ludwig Niessen
Analytical and Bioanalytical Chemistry.2021; 413(19): 4801. CrossRef
Visual and Rapid Diagnosis of Neisseria gonorrhoeae Using Loop-Mediated Isothermal Amplification Combined With a Polymer Nanoparticle–Based Biosensor in Clinical Application
Xu Chen, Qingxue Zhou, Xueli Wu, Shuoshi Wang, Rui Liu, Shilei Dong, Wei Yuan
Frontiers in Molecular Biosciences.2021;[Epub] CrossRef
Electrochemical Strategy for Low-Cost Viral Detection
Marjon Zamani, James M. Robson, Andy Fan, Michael S. Bono, Ariel L. Furst, Catherine M. Klapperich
ACS Central Science.2021; 7(6): 963. CrossRef
Development of a loop-mediated isothermal amplification (LAMP) assay for the identification of the invasive wood borer Aromia bungii (Coleoptera: Cerambycidae) from frass
Domenico Rizzo, Nicola Luchi, Daniele Da Lio, Linda Bartolini, Francesco Nugnes, Giovanni Cappellini, Tommaso Bruscoli, Chiara Salemi, Raffaele V. Griffo, Antonio P. Garonna, Elisabetta Rossi
3 Biotech.2021;[Epub] CrossRef
Development of Three Molecular Diagnostic Tools for the Identification of the False Codling Moth (Lepidoptera: Tortricidae)
D Rizzo, D Da Lio, L Bartolini, G Cappellini, T Bruscoli, C Salemi, A Aronadio, D Del Nista, F Pennacchio, N Boersma, E Rossi, P Sacchetti, Brian Rector
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Use of LAMP for Assessing Botrytis cinerea Colonization of Bunch Trash and Latent Infection of Berries in Grapevines
Melissa Si Ammour, Eleonora Castaldo, Giorgia Fedele, Vittorio Rossi
Plants.2020; 9(11): 1538. CrossRef
Rapid detection of two emerging viruses associated with necrotic symptoms in Areca catechu L. by reverse transcription loop-mediated isothermal amplification (RT-LAMP)
Guangyuan Zhao, Wentao Shen, Decai Tuo, Hongguang Cui, Pu Yan, Qinghua Tang, Guopeng Zhu, Xiaoying Li, Peng Zhou, Yindong Zhang
Journal of Virological Methods.2020; 281: 113795. CrossRef
Rapid differentiation of PEDV wild-type strains and classical attenuated vaccine strains by fluorescent probe-based reverse transcription recombinase polymerase amplification assay
Zhilin Wang, Xuerui Li, Youjun Shang, Jinyan Wu, Zhen Dong, Xiaoan Cao, Yongsheng Liu, Xi Lan
BMC Veterinary Research.2020;[Epub] CrossRef
Molecular and Immunological Diagnostic Techniques of Medical Viruses
Daniel Hussien Reta, Tesfaye Sisay Tessema, Addis Simachew Ashenef, Adey Feleke Desta, Wajana Lako Labisso, Solomon Tebeje Gizaw, Solomon Mequanente Abay, Daniel Seifu Melka, Fisseha Alemu Reta
International Journal of Microbiology.2020; 2020: 1. CrossRef
Molecular Approaches for Low-Cost Point-of-Care Pathogen Detection in Agriculture and Forestry
Paolo Baldi, Nicola La Porta
Frontiers in Plant Science.2020;[Epub] CrossRef
Loop-Mediated Isothermal Amplification as Point-of-Care Diagnosis for Neglected Parasitic Infections
Catalina Avendaño, Manuel Alfonso Patarroyo
International Journal of Molecular Sciences.2020; 21(21): 7981. CrossRef
COVID‐19 Clinical Diagnostics and Testing Technology
Cindy H. Chau, Jonathan D. Strope, William D. Figg
Pharmacotherapy: The Journal of Human Pharmacology and Drug Therapy.2020; 40(8): 857. CrossRef
Rapid visualized isothermal nucleic acid testing of Vibrio parahaemolyticus by polymerase spiral reaction
Shiyu He, Hongbo Jang, Chao Zhao, Kun Xu, Juan Wang, Bo Pang, Xiaoxue Si, Minghua Jin, Xiuling Song, Juan Li
Analytical and Bioanalytical Chemistry.2020; 412(1): 93. CrossRef
Highly sensitive and fast Legionella spp. in situ detection based on a loop mediated isothermal amplification technique combined to an electrochemical transduction system
Garbiñe Olabarria, Unai Eletxigerra, Isabel Rodriguez, Ainhoa Bilbao, Jesus Berganza, Santos Merino
Talanta.2020; 217: 121061. CrossRef
LAMP-LFD Based on Isothermal Amplification of Multicopy Gene ORF160b: Applicability for Highly Sensitive Low-Tech Screening of Allergenic Soybean (Glycine max) in Food
Stefanie M. Allgöwer, Chris A. Hartmann, Clarissa Lipinski, Vera Mahler, Stefanie Randow, Elke Völker, Thomas Holzhauser
Foods.2020; 9(12): 1741. CrossRef
Safety, Quality and Analytical Authentication of ḥalāl Meat Products, with Particular Emphasis on Salami: A Review
Maria Martuscelli, Annalisa Serio, Oriana Capezio, Dino Mastrocola
Foods.2020; 9(8): 1111. CrossRef
Diagnostic Values of Multiplex Loop-Mediated Isothermal Amplification and Multiplex Polymerase Chain Reaction for Detection of Methicillin-Resistant Staphylococcus aureus
Sara Kashani, Amir Houshang Alvandi, Ramin Abiri
Jundishapur Journal of Microbiology.2020;[Epub] CrossRef
Graphene oxide-based molecular diagnostic biosensor for simultaneous detection of Zika and dengue viruses
Ji-Seon Lee, Jungho Kim, Hojeong Shin, Dal-Hee Min
2D Materials.2020; 7(4): 044001. CrossRef
Sowing seeds for the future: The need for on-site plant diagnostics
Arabelle Cassedy, Ewen Mullins, Richard O'Kennedy
Biotechnology Advances.2020; 39: 107358. CrossRef
Comparison of Loop-Mediated Isothermal Amplification, Microscopy, Culture, and PCR for Diagnosis of Pulmonary Tuberculosis
Benjawan Phetsuksiri, Janisara Rudeeaneksin, Sopa Srisungngam, Supranee Bunchoo, Wiphat Klayut, Chie Nakajima, Shigeyugi Hamada, Yasuhiko Suzuki
Japanese Journal of Infectious Diseases.2020; 73(4): 272. CrossRef
Development and Evaluation of a Loop-mediated Isothermal Amplification Assay for the Rapid Detection and Identification of Pectobacterium carotovorum on Celery in the Field
Yanxia Shi, Zhiwen Jin, Xianglong Meng, Lixue Wang, Xuewen Xie, Ali Chai, Baoju Li
Horticultural Plant Journal.2020; 6(5): 313. CrossRef
Combining the Sensitivity of LAMP and Simplicity of Primer Extension via a DNA-Modified Nucleotide
Moritz Welter, Andreas Marx
Chemistry.2020; 2(2): 490. CrossRef
Application of loop-mediated isothermal amplification combined with lateral flow dipstick to rapid and sensitive detection of Alexandrium catenella
Liang Wang, Guofu Chen, Chunyun Zhang, Yuanyuan Wang, Rui Sun
Environmental Science and Pollution Research.2020; 27(4): 4246. CrossRef
The Development of Highly Specific and Sensitive Primers for the Detection of Potentially Allergenic Soybean (Glycine max) Using Loop-Mediated Isothermal Amplification Combined with Lateral Flow Dipstick (LAMP-LFD)
Stefanie M. Allgöwer, Chris A. Hartmann, Thomas Holzhauser
Foods.2020; 9(4): 423. CrossRef
Multiplex Digital MicroRNA Detection Using Cross-Inhibitory DNA Circuits
Yannick Rondelez, Guillaume Gines
ACS Sensors.2020; 5(8): 2430. CrossRef
Target-Catalyzed Assembly of Pyrene-Labeled Hairpins for Exponentially Amplified Biosensing
Zhengqing He, Jie Wu, Bin Qiao, Hua Pei, Qianfeng Xia, Qiang Wu, Huangxian Ju
ACS Applied Bio Materials.2020; 3(8): 5342. CrossRef
Critical review of methods for isothermal amplification of nucleic acids for environmental analysis
Dana M. Nieuwkerk, Asja Korajkic, Erika L. Valdespino, Michael P. Herrmann, Valerie J. Harwood
Journal of Microbiological Methods.2020; 179: 106099. CrossRef
A Loop-Mediated Isothermal Amplification Assay for the Detection of Treponema pallidum subsp. pertenue
Laud Anthony W. Basing, Shirley Victoria Simpson, Yaw Adu-Sarkodie, Jacqueline C. Linnes
The American Journal of Tropical Medicine and Hygiene.2020; 103(1): 253. CrossRef
Visual detection of high-risk HPV16 and HPV18 based on loop-mediated isothermal amplification
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Talanta.2020; 217: 121015. CrossRef
A real-time isothermal amplification based portable microfluidic system for simple and reliable detection of Vibrio splendidus
Runtao Zhong, Shilin Liu, Xiaohui Wang, Guohao Zhang, Ning Gong, Mengyu Wang, Yeqing Sun
Analytical Methods.2020; 12(23): 2985. CrossRef
Nucleic acid detection aboard the International Space Station by colorimetric loop‐mediated isothermal amplification (LAMP)
Julian Rubinfien, Kutay D. Atabay, Nicole M. Nichols, Nathan A. Tanner, John A. Pezza, Michelle M. Gray, Brandon M. Wagner, Jayme N. Poppin, Jordan T. Aken, Emily J. Gleason, Kevin D. Foley, David Scott Copeland, Sebastian Kraves, Ezequiel Alvarez Saavedr
FASEB BioAdvances.2020; 2(3): 160. CrossRef
Dynamic Laser Speckle Imaging Meets Machine Learning to Enable Rapid Antibacterial Susceptibility Testing (DyRAST)
Keren Zhou, Chen Zhou, Anjali Sapre, Jared Henry Pavlock, Ashley Weaver, Ritvik Muralidharan, Josh Noble, Taejung Chung, Jasna Kovac, Zhiwen Liu, Aida Ebrahimi
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Detection of human papillomavirus in oropharyngeal squamous cell carcinoma
Fatin Hazwani Fauzi, Nurul Izzati Hamzan, Nurhayu Ab Rahman, Siti Suraiya, Suharni Mohamad
Journal of Zhejiang University-SCIENCE B.2020; 21(12): 961. CrossRef
Differential susceptibility of Onchocerca volvulus microfilaria to ivermectin in two areas of contrasting history of mass drug administration in Cameroon: relevance of microscopy and molecular techniques for the monitoring of skin microfilarial repopulati
Raphael Awah Abong, Glory N. Amambo, Patrick W. Chounna Ndongmo, Abdel Jelil Njouendou, Manuel Ritter, Amuam Andrew Beng, Mathias Eyong Esum, Kebede Deribe, Jerome Fru-Cho, Fanny F. Fombad, Theobald Mue Nji, Peter Ivo Enyong, Catherine B. Poole, Kenneth P
BMC Infectious Diseases.2020;[Epub] CrossRef
A LAMP at the end of the tunnel: A rapid, field deployable assay for the kauri dieback pathogen, Phytophthora agathidicida
Richard C. Winkworth, Briana C. W. Nelson, Stanley E. Bellgard, Chantal M. Probst, Patricia A. McLenachan, Peter J. Lockhart, Ruslan Kalendar
PLOS ONE.2020; 15(1): e0224007. CrossRef
Molecular Markers for Detecting Schistosoma Species by Loop-Mediated Isothermal Amplification
Pedro Fernández-Soto, Catalina Avendaño, Anna Sala-Vizcaíno, Beatriz Crego-Vicente, Begoña Febrer-Sendra, Juan García-Bernalt Diego, Ana Oleaga, Julio López-Abán, Belén Vicente, Manuel A. Patarroyo, Antonio Muro
Disease Markers.2020; 2020: 1. CrossRef
Molecular detection of Fusarium graminearum causing head blight of wheat by loop mediated isothermal amplification (LAMP) assay
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Indian Phytopathology.2020; 73(4): 667. CrossRef
Phytophthora agathidicida: research progress, cultural perspectives and knowledge gaps in the control and management of kauri dieback in New Zealand
R. E. Bradshaw, S. E. Bellgard, A. Black, B. R. Burns, M. L. Gerth, R. L. McDougal, P. M. Scott, N. W. Waipara, B. S. Weir, N. M. Williams, R. C. Winkworth, T. Ashcroft, E. L. Bradley, P. P. Dijkwel, Y. Guo, R. F. Lacey, C. H. Mesarich, P. Panda, I. J. Ho
Plant Pathology.2020; 69(1): 3. CrossRef
Development of a LAMP method for detecting the N75S mutant in SDHI-resistant Corynespora cassiicola
Jiamei Zhu, Lingyan Zhang, Hong Li, Yangyang Gao, Wei Mu, Feng Liu
Analytical Biochemistry.2020; 597: 113687. CrossRef
Comparative evaluation of loop-mediated isothermal amplification (LAMP) vs qPCR for detection of Toxoplasma gondii oocysts DNA in mussels
Loïc Durand, Stéphanie La Carbona, Alain Geffard, Alessia Possenti, Jitender P. Dubey, Marco Lalle
Experimental Parasitology.2020; 208: 107809. CrossRef
On-Site Detection of Tissues of Buffalo Origin by Loop-Mediated Isothermal Amplification (LAMP) Assay Targeting Mitochondrial Gene Sequences
Sarita Kumari, R. R. Kumar, S. K. Mendiratta, Deepak Kumar, Arun Kumar, Dhananjay Kumar, Preeti Rana, Jyoti Jawla
Food Analytical Methods.2020; 13(5): 1060. CrossRef
Rapid detection of pork using alkaline lysis- Loop Mediated Isothermal Amplification (AL-LAMP) technique
P.S. Girish, S.B. Barbuddhe, Aparana Kumari, Deepak B. Rawool, Nagappa S. Karabasanavar, M. Muthukumar, S. Vaithiyanathan
Food Control.2020; 110: 107015. CrossRef
Development of a reverse transcription loop-mediated isothermal amplification assay (RT-LAMP) that detects enteroviruses by targeting the highly conserved 5′-UTR region
M. Daskou, T. G. Dimitriou, G. Kouklamani-Giannouli, M. Nikolaidis, D. Mossialos, G. D. Amoutzias, P. Markoulatos
Virus Genes.2020; 56(2): 194. CrossRef
Cercospora beticola: The intoxicating lifestyle of the leaf spot pathogen of sugar beet
Lorena I. Rangel, Rebecca E. Spanner, Malaika K. Ebert, Sarah J. Pethybridge, Eva H. Stukenbrock, Ronnie de Jonge, Gary A. Secor, Melvin D. Bolton
Molecular Plant Pathology.2020; 21(8): 1020. CrossRef
Molecular Identification of Anoplophora glabripennis (Coleoptera: Cerambycidae) From Frass by Loop-Mediated Isothermal Amplification
Domenico Rizzo, Andrea Taddei, Daniele Da Lio, Tommaso Bruscoli, Giovanni Cappellini, Linda Bartolini, Chiara Salemi, Nicola Luchi, Fabrizio Pennacchio, Elisabetta Rossi, Brian Rector
Journal of Economic Entomology.2020; 113(6): 2911. CrossRef
Droplet and Microchamber‐Based Digital Loop‐Mediated Isothermal Amplification (dLAMP)
Hao Yuan, Youchuang Chao, Ho Cheung Shum
Small.2020;[Epub] CrossRef
Molecular Diagnosis of COVID-19: Challenges and Research Needs
Wei Feng, Ashley M. Newbigging, Connie Le, Bo Pang, Hanyong Peng, Yiren Cao, Jinjun Wu, Ghulam Abbas, Jin Song, Dian-Bing Wang, Mengmeng Cui, Jeffrey Tao, D. Lorne Tyrrell, Xian-En Zhang, Hongquan Zhang, X. Chris Le
Analytical Chemistry.2020; 92(15): 10196. CrossRef
Prospects For the Use of Loop Isothermal Amplification in the Diagnosis of Particularly Dangerous Infectious Diseases Caused by the Viruses of the Pathogenicity Group I
M. Yu. Kartashov, E. V. Chub, T. P. Mikryukova, E. V. Naidenova, V. A. Ternovoy
Problems of Particularly Dangerous Infections.2020; (2): 22. CrossRef
Effect of metal ions on isothermal amplification with Bst exo- DNA polymerase
Ravil R. Garafutdinov, Aidar R. Gilvanov, Olga Yu. Kupova, Assol R. Sakhabutdinova
International Journal of Biological Macromolecules.2020; 161: 1447. CrossRef
Advances in HIV diagnosis and monitoring
Md Alamgir Kabir, Hussein Zilouchian, Massimo Caputi, Waseem Asghar
Critical Reviews in Biotechnology.2020; 40(5): 623. CrossRef
A loop-mediated isothermal amplification (LAMP) assay for the consensus detection of human pathogenic Campylobacter species
Uma S. Babu, Lisa M. Harrison, Mark K. Mammel, Elmer C. Bigley, Kelli L. Hiett, Kannan V. Balan
Journal of Microbiological Methods.2020; 176: 106009. CrossRef
The Colorimetric Isothermal Multiple-Self-Matching-Initiated Amplification Using Cresol Red for Rapid and Sensitive Detection of Porcine Circovirus 3
Hongchao Gou, Zhibiao Bian, Rujian Cai, Zhiyong Jiang, Shuai Song, Yan Li, Pinpin Chu, Dongxia Yang, Ying-An Zang, Chunling Li
Frontiers in Veterinary Science.2020;[Epub] CrossRef
iso-μmGene: an isothermal amplification-based portable microfluidic system for simple, reliable and flexibly multiplexed genetic identification and quantification
Runtao Zhong, Shilin Liu, Guohao Zhang, Mengyu Wang, Yeqing Sun
The Analyst.2020; 145(13): 4627. CrossRef
Electrochemical Detection of Genomic DNA Utilizing Recombinase Polymerase Amplification and Stem-Loop Probe
Shirin Khaliliazar, Liangqi Ouyang, Andrew Piper, Georgios Chondrogiannis, Martin Hanze, Anna Herland, Mahiar Max Hamedi
ACS Omega.2020; 5(21): 12103. CrossRef
Use of real-time multiplex PCR, malaria rapid diagnostic test and microscopy to investigate the prevalence of Plasmodium species among febrile hospital patients in Sierra Leone
Tomasz A. Leski, Chris Rowe Taitt, Abdulai G. Swaray, Umaru Bangura, Nathanael D. Reynolds, Andrew Holtz, Chadwick Yasuda, Joseph Lahai, Joseph M. Lamin, Victoria Baio, Kathryn H. Jacobsen, Rashid Ansumana, David A. Stenger
Malaria Journal.2020;[Epub] CrossRef
Rapid detection of antibiotic resistance genes in lactic acid bacteria using PMMA-based microreactor arrays
Zengjun Jin, Guotao Ding, Guoxing Yang, Guiying Li, Wei Zhang, Lixin Yang, Weihao Li
Applied Microbiology and Biotechnology.2020; 104(14): 6375. CrossRef
Variplex™ test system fails to reliably detect SARS-CoV-2 directly from respiratory samples without RNA extraction
Florian Eckel, Franziska Küsters, Bernhard Drossel, Markus Konert, Hans Mattes, Stefan Schopf
European Journal of Clinical Microbiology & Infectious Diseases.2020; 39(12): 2373. CrossRef
Rapid detection of foodborne bacterial pathogens using visual high‐throughput microfluidic chip
Zengjun Jin, Guotao Ding, Guiying Li, Guoxing Yang, Yonghong Han, Ning Hao, Jian Deng, Yan Zhang, Wei Zhang, Weihao Li
Journal of Chemical Technology & Biotechnology.2020; 95(5): 1460. CrossRef
Development of a Species Diagnostic Molecular Tool for an Invasive Pest, Mythimna loreyi, Using LAMP
Hwa Yeun Nam, Min Kwon, Hyun Ju Kim, Juil Kim
Insects.2020; 11(11): 817. CrossRef
A Diagnostic Loop-Mediated Isothermal Amplification Method to Distinguish Helicoverpa armigera (Lepidoptera: Noctuidae) From Other Related Species in the New World
Takayuki Amano, Masashi Nomura, Jianxiu Yao
Journal of Insect Science.2020;[Epub] CrossRef
Simplified closed tube loop mediated isothermal amplification (LAMP) assay for visual diagnosis of Leishmania infection
Charanyarut Sukphattanaudomchoke, Suradej Siripattanapipong, Thanyapit Thita, Saovanee Leelayoova, Phunlerd Piyaraj, Mathirut Mungthin, Toon Ruang-areerate
Acta Tropica.2020; 212: 105651. CrossRef
Α 2-stage, nested-like nucleic acid amplification method (IsoPCR) for the highly sensitive detection of HPV16 and HPV18 DNA
M. Daskou, D. Tsakogiannis, T.G. Dimitriou, M. Manali, C. Apti, G.D. Amoutzias, D. Mossialos, C. Kottaridi, P. Markoulatos
Molecular and Cellular Probes.2019; 45: 1. CrossRef
Development of a loop-mediated isothermal amplification (LAMP) assay for the detection of Anaplasma marginale
Rodrigo Giglioti, César Cristiano Bassetto, Cintia Hiromi Okino, Henrique Nunes de Oliveira, Márcia Cristina de Sena Oliveira
Experimental and Applied Acarology.2019; 77(1): 65. CrossRef
Development of Three Loop-Mediated Isothermal Amplification (LAMP) Assays for the Rapid Detection of Calonectria ilicicola, Dactylonectria macrodidyma, and the Dactylonectria Genus in Avocado Roots
Louisamarie E. Parkinson, Duy P. Le, Elizabeth K. Dann
Plant Disease.2019; 103(8): 1865. CrossRef
Detection of Vibrio anguillarum and Vibrio alginolyticus by Singleplex and Duplex Loop-Mediated Isothermal Amplification (LAMP) Assays Targeted to groEL and fklB Genes
Mahbubul Pratik Siddique, Won Je Jang, Jong Min Lee, Md Tawheed Hasan, Chang-Hoon Kim, In-Soo Kong
International Microbiology.2019; 22(4): 501. CrossRef
A foldable isothermal amplification microdevice for fuchsin-based colorimetric detection of multiple foodborne pathogens
Thi Ngoc Diep Trinh, Nae Yoon Lee
Lab on a Chip.2019; 19(8): 1397. CrossRef
Rapid and semiquantitative detection of Staphylococcus epidermidis in humor samples by microfluidic platform
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Sensors and Actuators B: Chemical.2019; 278: 8. CrossRef
A Review on Equine Piroplasmosis: Epidemiology, Vector Ecology, Risk Factors, Host Immunity, Diagnosis and Control
ThankGod E. Onyiche, Keisuke Suganuma, Ikuo Igarashi, Naoaki Yokoyama, Xuenan Xuan, Oriel Thekisoe
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Simple Visualized Detection Method of Virulence-Associated Genes of Vibrio cholerae by Loop-Mediated Isothermal Amplification
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Sensors.2018; 18(10): 3423. CrossRef
Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP)
Chukwuemeka K. Nkere, Joshua O. Oyekanmi, Gonçalo Silva, Moritz Bömer, Gabriel I. Atiri, Joseph Onyeka, Norbert G. Maroya, Susan E. Seal, P. Lava Kumar
Archives of Virology.2018; 163(4): 1057. CrossRef
Sensitive and less invasive confirmatory diagnosis of visceral leishmaniasis in Sudan using loop-mediated isothermal amplification (LAMP)
Maowia Mukhtar, Sababil S. Ali, Salah A. Boshara, Audrey Albertini, Séverine Monnerat, Paul Bessell, Yasuyoshi Mori, Yutaka Kubota, Joseph M. Ndung’u, Israel Cruz, Anne-Laure Bañuls
PLOS Neglected Tropical Diseases.2018; 12(2): e0006264. CrossRef
Community-Acquired Pneumonia in Children: the Challenges of Microbiological Diagnosis
C. M. C. Rodrigues, H. Groves, Colleen Suzanne Kraft
Journal of Clinical Microbiology.2018;[Epub] CrossRef
Évaluation d’une technique LAMP pour le diagnostic de la prédisposition génétique à l’intolérance au lactose
Minh-Toàn Duong, Lise Hebert, Sébastien Courcelle, Franck Ceppa, Hervé Delacour
Revue Francophone des Laboratoires.2018; 2018(504): 20. CrossRef
Loop-mediated isothermal amplification for visual detection of Vibrio parahaemolyticus using gold nanoparticles
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Y.-P. Wong, S. Othman, Y.-L. Lau, S. Radu, H.-Y. Chee
Journal of Applied Microbiology.2018; 124(3): 626. CrossRef
Multiplex sample-to-answer detection of bacteria using a pipette-actuated capillary array comb with integrated DNA extraction, isothermal amplification, and smartphone detection
Junhou Hui, Yin Gu, Yuanshou Zhu, Yanjing Chen, Shu-juan Guo, Sheng-ce Tao, Yan Zhang, Peng Liu
Lab on a Chip.2018; 18(18): 2854. CrossRef
EFFICIENCY OF APPLICATION OF ISOTHERMAL AMPLIFICATION AT INSPECTION OF PATIENTS WITH WHOOPING COUGH
A. S. Pimenova, O. Yu. Borisova, M. S. Petrova, I. S. Voronina, A. B. Borisova, O. V. Shamsheva, S. S. Afanasiev, E. V. Vlasov, V. A. Aleshkin
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Rapid discriminative detection of dengue viruses via loop mediated isothermal amplification
Jong-Gil Kim, Seung Hoon Baek, Seungrok Kim, Hae In Kim, Seung Woo Lee, Le Minh Tu Phan, Suresh Kumar Kailasa, Tae Jung Park
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A multiplex microfluidic loop-mediated isothermal amplification array for detection of malaria-related parasites and vectors
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Acta Tropica.2018; 178: 86. CrossRef
Detection of HCV genotypes 1b and 2a by a reverse transcription loop‐mediated isothermal amplification assay
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Journal of Medical Virology.2017; 89(6): 1048. CrossRef
A smartphone-based diagnostic platform for rapid detection of Zika, chikungunya, and dengue viruses
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Scientific Reports.2017;[Epub] CrossRef
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Development of a Quantitative Loop-Mediated Isothermal Amplification Assay for the Rapid Detection of Novel Goose Parvovirus
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Frontiers in Microbiology.2017;[Epub] CrossRef
LAMPhimerus: A novel LAMP assay for detecting Amphimerus sp. DNA in human stool samples
William Cevallos, Pedro Fernández-Soto, Manuel Calvopiña, Cristina Fontecha-Cuenca, Hiromu Sugiyama, Megumi Sato, Julio López Abán, Belén Vicente, Antonio Muro, David Blair
PLOS Neglected Tropical Diseases.2017; 11(6): e0005672. CrossRef
Stem loop-mediated isothermal amplification test: comparative analysis with classical LAMP and PCR in detection of Entamoeba histolytica in Kenya
Fridah Mwendwa, Cecilia K. Mbae, Johnson Kinyua, Erastus Mulinge, Gitonga Nkanata Mburugu, Zablon K. Njiru
BMC Research Notes.2017;[Epub] CrossRef
Rapid pathogen-specific phenotypic antibiotic susceptibility testing using digital LAMP quantification in clinical samples
Nathan G. Schoepp, Travis S. Schlappi, Matthew S. Curtis, Slava S. Butkovich, Shelley Miller, Romney M. Humphries, Rustem F. Ismagilov
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Zhihan Zhao, Shixing Chen, Jianbang Wang, Jing Su, Jiaqiang Xu, Sanjay Mathur, Chunhai Fan, Shiping Song
Biosensors and Bioelectronics.2017; 94: 605. CrossRef
Identification of Methicillin-Resistant Staphylococcus aureus (MRSA) Using Simultaneous Detection of mecA, nuc, and femB by Loop-Mediated Isothermal Amplification (LAMP)
Changguo Chen, Qiangyuan Zhao, Jianwei Guo, Yanjun Li, Qiuyuan Chen
Current Microbiology.2017; 74(8): 965. CrossRef
Paper microchip with a graphene-modified silver nano-composite electrode for electrical sensing of microbial pathogens
Mohammadali Safavieh, Vivasvat Kaul, Sultan Khetani, Anupriya Singh, Karan Dhingra, Manoj Kumar Kanakasabapathy, Mohamed Shehata Draz, Adnan Memic, Daniel R. Kuritzkes, Hadi Shafiee
Nanoscale.2017; 9(5): 1852. CrossRef
Loop‐mediated isothermal amplification (LAMP) as an alternative to PCR: A rapid on‐site detection of gene doping
Olivier Salamin, Tiia Kuuranne, Martial Saugy, Nicolas Leuenberger
Drug Testing and Analysis.2017; 9(11-12): 1731. CrossRef
A loop-mediated, isothermal amplification-based method for visual detection of Vibrio parahaemolyticus within only 1 h, from shrimp sampling to results
Rui Wang, Xingning Xiao, Yuan Chen, Jun Wu, Wenjuan Qian, Liu Wang, Yuan Liu, Feng Ji, Jian Wu
Analytical Methods.2017; 9(11): 1695. CrossRef
Hands-free smartphone-based diagnostics for simultaneous detection of Zika, Chikungunya, and Dengue at point-of-care
A. Ganguli, A. Ornob, H. Yu, G. L. Damhorst, W. Chen, F. Sun, A. Bhuiya, B. T. Cunningham, R. Bashir
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Establishment and Evaluation of a Loop-Mediated Isothermal Amplification Assay for Detection of Raccoon Dog in Meat Mixtures
Jinhua Liu, Yanyu Shi, Siying Teng, Lianpeng Wu, Xinmin Zhang
Journal of Food Quality.2017; 2017: 1. CrossRef
Development of a recombinase polymerase amplification lateral flow dipstick (RPA-LFD) for the field diagnosis of caprine arthritis-encephalitis virus (CAEV) infection
Po-An Tu, Jia-Shian Shiu, Shu-Hwae Lee, Victor Fei Pang, De-Chi Wang, Pei-Hwa Wang
Journal of Virological Methods.2017; 243: 98. CrossRef
Loop-mediated isothermal amplification (LAMP) for detection of the red ring nematode, Bursaphelenchus cocophilus
Tatsuya Ide, Natsumi Kanzaki, Pedro Pablo Parra Giraldo, Robin M. Giblin-Davis
Nematology.2017; 19(5): 559. CrossRef
A smart sealed nucleic acid biosensor based on endogenous reference gene detection to screen and identify mammals on site
Yuancong Xu, Wenjin Xiang, Qin Wang, Nan Cheng, Li Zhang, Kunlun Huang, Wentao Xu
Scientific Reports.2017;[Epub] CrossRef
Development of a loop-mediated isothermal amplification technique and comparison with quantitative real-time PCR for the rapid visual detection of canine neosporosis
Aongart Mahittikorn, Nipa Thammasonthijarern, Amonrattana Roobthaisong, Ruenruetai Udonsom, Supaluk Popruk, Sukhontha Siri, Hirotake Mori, Yaowalark Sukthana
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Analytical sensitivity and specificity of a loop-mediated isothermal amplification (LAMP) kit prototype for detection of Trypanosoma cruzi DNA in human blood samples
Susana A. Besuschio, Mónica Llano Murcia, Alejandro F. Benatar, Severine Monnerat, Israel Cruz, Albert Picado, María de los Ángeles Curto, Yutaka Kubota, Diana P. Wehrendt, Paula Pavia, Yasuyoshi Mori, Concepción Puerta, Joseph M. Ndung'u, Alejandro G. Sc
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The development of loop-mediated isothermal amplification (LAMP) assays for the rapid authentication of five forbidden vegetables in strict vegetarian diets
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Development and evaluation of rapid novel isothermal amplification assays for important veterinary pathogens:Chlamydia psittaciandChlamydia pecorum
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Sequence-specific validation of LAMP amplicons in real-time optomagnetic detection of Dengue serotype 2 synthetic DNA
Gabriel Antonio S. Minero, Catarina Nogueira, Giovanni Rizzi, Bo Tian, Jeppe Fock, Marco Donolato, Mattias Strömberg, Mikkel F. Hansen
The Analyst.2017; 142(18): 3441. CrossRef
Detection of schistosomiasis applicable for primary health care facilities in endemic regions of Africa
Alžbeta Kaiglová, Pavol Beňo, Mwatasa J. S. Changoma
Biologia.2017; 72(10): 1113. CrossRef
A Digital Microfluidics Platform for Loop-Mediated Isothermal Amplification Detection
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Molecular detection of genotype II grass carp reovirus based on nucleic acid sequence-based amplification combined with enzyme-linked immunosorbent assay (NASBA-ELISA)
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Detection assay for HPV16 and HPV18 by loop-mediated isothermal amplification with lateral flow dipstick tests
Ratchanida Kumvongpin, Patcharee Jearanaikoon, Chotchana Wilailuckana, Nattaya Sae-Ung, Prinya Prasongdee, Sakda Daduang, Metee Wongsena, Patcharee Boonsiri, Wansika Kiatpathomchai, Sukumarn Sanersak Swangvaree, Alisa Sandee, Jureerut Daduang
Molecular Medicine Reports.2017; 15(5): 3203. CrossRef
Colorimetric tests for diagnosis of filarial infection and vector surveillance using non-instrumented nucleic acid loop-mediated isothermal amplification (NINA-LAMP)
Catherine B. Poole, Zhiru Li, Andy Alhassan, Dylan Guelig, Steven Diesburg, Nathan A. Tanner, Yinhua Zhang, Thomas C. Evans, Paul LaBarre, Samuel Wanji, Robert A. Burton, Clotilde K. S. Carlow, Matty Knight
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Mie Scatter and Interfacial Tension Based Real‐Time Quantification of Colloidal Emulsion Nucleic Acid Amplification
Ariana M. Nicolini, Tyler D. Toth, Samuel Y. Kim, M. Alejandra Mandel, David W. Galbraith, Jeong‐Yeol Yoon
Advanced Biosystems.2017;[Epub] CrossRef
Development and evaluation of a rapid molecular diagnostic test for Zika virus infection by reverse transcription loop-mediated isothermal amplification
Yohei Kurosaki, Danyelly Bruneska Gondim Martins, Mayuko Kimura, Andriu dos Santos Catena, Maria Amélia Carlos Souto Maior Borba, Sandra da Silva Mattos, Haruka Abe, Rokusuke Yoshikawa, José Luiz de Lima Filho, Jiro Yasuda
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Minsoo Kim, Dan Li, Okkyoung Choi, Byoung-In Sang, Pen Chi Chiang, Hyunook Kim
Korean Journal of Chemical Engineering.2017; 34(10): 2678. CrossRef
Rapid on-site evaluation of the development of resistance to quinone outside inhibitors in Botrytis cinerea
X. R. Hu, D. J. Dai, H. D. Wang, C. Q. Zhang
Scientific Reports.2017;[Epub] CrossRef
DNA amplification in the field: move over PCR, here comes LAMP
Patricia L. M. Lee
Molecular Ecology Resources.2017; 17(2): 138. CrossRef
Rapid and Sensitive Detection of sFAT-1 Transgenic Pigs by Visual Loop-Mediated Isothermal Amplification
Chenyu Tao, Yalan Yang, Xunbi Li, Xinmin Zheng, Hongyan Ren, Kui Li, Rong Zhou
Applied Biochemistry and Biotechnology.2016; 179(6): 938. CrossRef
Peste des petits ruminants diagnosis and diagnostic tools at a glance: perspectives on global control and eradication
Ramasamy Santhamani, Rabindra Prasad Singh, Felix Njeumi
Archives of Virology.2016; 161(11): 2953. CrossRef
Molecular Identification of an Invasive Wood-Boring InsectLyctus brunneus(Coleoptera: Bostrichidae: Lyctinae) Using Frass by Loop-Mediated Isothermal Amplification and Nested PCR Assays
Tatsuya Ide, Natsumi Kanzaki, Wakako Ohmura, Kimiko Okabe
Journal of Economic Entomology.2016; 109(3): 1410. CrossRef
Porcine epidemic diarrhea virus: An overview of current virological and serological diagnostic methods
D.G. Diel, S. Lawson, F. Okda, A. Singrey, T. Clement, M.H.V. Fernandes, J. Christopher-Hennings, E.A. Nelson
Virus Research.2016; 226: 60. CrossRef
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Bioorganic & Medicinal Chemistry Letters.2016; 26(3): 841. CrossRef
A field-deployable mobile molecular diagnostic system for malaria at the point of need
Gihoon Choi, Daniel Song, Sony Shrestha, Jun Miao, Liwang Cui, Weihua Guan
Lab on a Chip.2016; 16(22): 4341. CrossRef
What’s New in Point-of-Care Testing?
Rachel D. Le, Ida Bixho, Stacy E. F. Melanson
Point of Care: The Journal of Near-Patient Testing & Technology.2016; 15(4): 158. CrossRef
Strong-LAMP: A LAMP Assay for Strongyloides spp. Detection in Stool and Urine Samples. Towards the Diagnosis of Human Strongyloidiasis Starting from a Rodent Model
Pedro Fernández-Soto, Alicia Sánchez-Hernández, Javier Gandasegui, Cristina Bajo Santos, Julio López-Abán, José María Saugar, Esperanza Rodríguez, Belén Vicente, Antonio Muro, James S McCarthy
PLOS Neglected Tropical Diseases.2016; 10(7): e0004836. CrossRef
Comparison of a new visual isothermal nucleic acid amplification test with PCR and skin snip analysis for diagnosis of onchocerciasis in humans
Andy Alhassan, Mike Y. Osei-Atweneboana, Kwadwo F. Kyeremeh, Catherine B. Poole, Zhiru Li, Edward Tettevi, Nathan A. Tanner, Clotilde K.S. Carlow
Molecular and Biochemical Parasitology.2016; 210(1-2): 10. CrossRef
Rapid and specific detection of Tilletia indica using loop-mediated isothermal DNA amplification
Y. Gao, M. K. Tan, Y. G. Zhu
Australasian Plant Pathology.2016; 45(4): 361. CrossRef
Establishment and application of a real-time loop-mediated isothermal amplification system for the detection of CYP2C19 polymorphisms
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Scientific Reports.2016;[Epub] CrossRef
A Novel Loop-Mediated Isothermal Amplification Assay for Serogroup Identification of Neisseria meningitidis in Cerebrospinal Fluid
DoKyung Lee, Eun Jin Kim, Paul E. Kilgore, Hideyuki Takahashi, Makoto Ohnishi, Jun Tomono, Shigehiko Miyamoto, Daisuke Omagari, Dong Wook Kim, Mitsuko Seki
Frontiers in Microbiology.2016;[Epub] CrossRef
Molecular Identification of the Western Drywood Termite (Isoptera: Kalotermitidae) by Loop-Mediated Isothermal Amplification of DNA from Fecal Pellets
Tatsuya Ide, Natsumi Kanzaki, Wakako Ohmura, Kimiko Okabe
Journal of Economic Entomology.2016; 109(5): 2234. CrossRef
An Innovative Method for Rapid Identification and Detection of Vibrio alginolyticus in Different Infection Models
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Frontiers in Microbiology.2016;[Epub] CrossRef
Rapid authentication of the precious herb saffron by loop-mediated isothermal amplification (LAMP) based on internal transcribed spacer 2 (ITS2) sequence
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Direct loop mediated isothermal amplification on filters for quantification of Dehalobacter in groundwater
Robert D Stedtfeld, Tiffany M Stedtfeld, Farag Samhan, Yogendra H Kanitkar, Paul B. Hatzinger, Alison M Cupples, Syed A Hashsham
Journal of Microbiological Methods.2016; 131: 61. CrossRef
Centrifugal loop-mediated isothermal amplification microdevice for rapid, multiplex and colorimetric foodborne pathogen detection
Seung Jun Oh, Byung Hyun Park, Jae Hwan Jung, Goro Choi, Doh C. Lee, Do Hyun Kim, Tae Seok Seo
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Laboratory Diagnosis of Central Nervous System Infection
Taojun He, Samuel Kaplan, Mini Kamboj, Yi-Wei Tang
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Mohammadali Safavieh, Manoj K. Kanakasabapathy, Farhang Tarlan, Minhaz U. Ahmed, Mohammed Zourob, Waseem Asghar, Hadi Shafiee
ACS Biomaterials Science & Engineering.2016; 2(3): 278. CrossRef
An integrated paper-based sample-to-answer biosensor for nucleic acid testing at the point of care
Jane Ru Choi, Jie Hu, Ruihua Tang, Yan Gong, Shangsheng Feng, Hui Ren, Ting Wen, XiuJun Li, Wan Abu Bakar Wan Abas, Belinda Pingguan-Murphy, Feng Xu
Lab on a Chip.2016; 16(3): 611. CrossRef
Biompha-LAMP: A New Rapid Loop-Mediated Isothermal Amplification Assay for Detecting Schistosoma mansoni in Biomphalaria glabrata Snail Host
Javier Gandasegui, Pedro Fernández-Soto, Juan Hernández-Goenaga, Julio López-Abán, Belén Vicente, Antonio Muro, Matty Knight
PLOS Neglected Tropical Diseases.2016; 10(12): e0005225. CrossRef
Detection of Bar Transgenic Sugarcane with a Rapid and Visual Loop-Mediated Isothermal Amplification Assay
Dinggang Zhou, Chunfeng Wang, Zhu Li, Yun Chen, Shiwu Gao, Jinlong Guo, Wenying Lu, Yachun Su, Liping Xu, Youxiong Que
Frontiers in Plant Science.2016;[Epub] CrossRef
A novel microfluidic device that integrates nucleic acid extraction, amplification, and detection to identify an EGFR mutation in lung cancer tissues
Yuanbin Liu, Yang Zhao, Yongxin Qin, Xiaohui Du, Qi Wang, Jianxin Lyu
RSC Advances.2016; 6(16): 13399. CrossRef
High sensitivity, loop-mediated isothermal amplification combined with colorimetric gold-nanoparticle probes for visual detection of high risk human papillomavirus genotypes 16 and 18
Ratchanida Kumvongpin, Patcharee Jearanaikool, Chotechana Wilailuckana, Nattaya Sae-ung, Prinya Prasongdee, Sakda Daduang, Metee Wongsena, Patcharee Boonsiri, Wansika Kiatpathomchai, Sukumarn Sanersak Swangvaree, Alisa Sandee, Jureerut Daduang
Journal of Virological Methods.2016; 234: 90. CrossRef
An isothermal DNA amplification method for detection of Onchocerca volvulus infection in skin biopsies
Ole Lagatie, Michelle Merino, Linda Batsa Debrah, Alexander Y. Debrah, Lieven J. Stuyver
Parasites & Vectors.2016;[Epub] CrossRef
An Advanced Visual Qualitative and EVA Green‐Based Quantitative Isothermal Amplification Method to Detect Listeria Monocytogenes
Nan Cheng, Yuancong Xu, Xinghua Yan, Ying Shang, Pengyu Zhu, Wenying Tian, Zhihong Liang, Wentao Xu
Journal of Food Safety.2016; 36(2): 237. CrossRef
A Loop-Mediated Isothermal Amplification Assay and Sample Preparation Procedure for Sensitive Detection of Xanthomonas fragariae in Strawberry
Hehe Wang, William W. Turechek, Tzong-Yueh Chen
PLOS ONE.2016; 11(1): e0147122. CrossRef
Laboratory Diagnosis of Pertussis
Anneke van der Zee, Joop F. P. Schellekens, Frits R. Mooi
Clinical Microbiology Reviews.2015; 28(4): 1005. CrossRef
Isothermal Amplification of Nucleic Acids
Yongxi Zhao, Feng Chen, Qian Li, Lihua Wang, Chunhai Fan
Chemical Reviews.2015; 115(22): 12491. CrossRef
Adsorption and isolation of nucleic acids on cellulose magnetic beads using a three-dimensional printed microfluidic chip
Lei Zhang, Rachel N. Deraney, Anubhav Tripathi
Biomicrofluidics.2015;[Epub] CrossRef
The Novel Multiple Inner Primers-Loop-Mediated Isothermal Amplification (MIP-LAMP) for Rapid Detection and Differentiation of Listeria monocytogenes
Yi Wang, Yan Wang, Aijing Ma, Dongxun Li, Lijuan Luo, Dongxin Liu, Shoukui Hu, Dong Jin, Kai Liu, Changyun Ye
Molecules.2015; 20(12): 21515. CrossRef
Development of reverse transcription loop mediated isothermal amplification assay for rapid detection of bluetongue viruses
Sreekala S. Mohandas, Dhanavelu Muthuchelvan, Awadh Bihari Pandey, Sanchay Kumar Biswas, Karam Chand, Gnanavel Venkatesan, Dheeraj Choudhary, Muthannan Andavar Ramakrishnan, Bimalendu Mondal
Journal of Virological Methods.2015; 222: 103. CrossRef
The Rapid-Heat LAMPellet Method: A Potential Diagnostic Method for Human Urogenital Schistosomiasis
Javier Gandasegui, Pedro Fernández-Soto, Cristina Carranza-Rodríguez, José Luis Pérez-Arellano, Belén Vicente, Julio López-Abán, Antonio Muro, Jeffrey Michael Bethony
PLOS Neglected Tropical Diseases.2015; 9(7): e0003963. CrossRef
Expanding the MDx toolbox for filarial diagnosis and surveillance
Andy Alhassan, Zhiru Li, Catherine B. Poole, Clotilde K.S. Carlow
Trends in Parasitology.2015; 31(8): 391. CrossRef
Detection of Mycobacterium tuberculosis complex in sputum specimens using a loop-mediated isothermal amplification assay in Korea
Se Hoon Moon, Eun Jin Kim, Jun Tomono, Shigehiko Miyamoto, Satoshi Mitarai, Dong Wook Kim, Mitsuko Seki
Journal of Medical Microbiology .2015; 64(11): 1335. CrossRef
Genome Filtering for New DNA Biomarkers of Loa loa Infection Suitable for Loop-Mediated Isothermal Amplification
Catherine B. Poole, Laurence Ettwiller, Nathan A. Tanner, Thomas C. Evans, Samuel Wanji, Clotilde K. S. Carlow, Matty Knight
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