Journal of Microbiology

Research Article

Korean Red ginseng enhances ZBP1-mediated cell death to suppress viral protein expression in host defense against Influenza A virus: Jueun Oh, Hayeon Kim, Jihye Lee, Suhyun Kim, Seyun Shin, Young-Eui Kim, Sehee Park, SangJoon Lee; J. Microbiol. 2025;63(1):e.2409007. Published online January 24, 2025; DOI: https://doi.org/10.71150/jm.2409007

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Abstract PDF Supplementary Material: Korean Red ginseng has emerged as a potent candidate in the fight against various viral infections, demonstrating significant efficacy both in vitro and in vivo, particularly against influenza A viruses. Despite substantial evidence of its antiviral properties, the detailed molecular mechanisms through which it reduces viral lethality remain insufficiently understood. Our investigations have highlighted the superior effectiveness of Korean Red ginseng against influenza viruses, outperforming its effects on numerous other viral strains. We aim to uncover the specific mechanisms by which Korean Red ginseng exerts its antiviral effects, focusing on influenza A viruses. Our prior studies have identified the role of Z-DNA-binding protein 1 (ZBP1), a signaling complex involved in inducing programmed cell death in response to influenza virus infection. Given the critical role of ZBP1 as a sensor for viral nucleic acid, we hypothesize that Korean Red ginseng may modulate the ZBP1-derived cell death pathway. This interaction is anticipated to enhance cell death while concurrently suppressing viral protein expression, offering novel insights into the antiviral mechanism of Korean Red ginseng against influenza A viruses.

Reviews

Microbiome-Mucosal Immunity Nexus: Driving Forces in Respiratory Disease Progression: Young Chae Park, Soo Yeon Choi, Yunah Cha, Hyeong Won Yoon, Young Min Son; J. Microbiol. 2024;62(9):709-725. Published online September 6, 2024; DOI: https://doi.org/10.1007/s12275-024-00167-4

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The importance of the complex interplay between the microbiome and mucosal immunity, particularly within the respiratory tract, has gained significant attention due to its potential implications for the severity and progression of lung diseases. Therefore, this review summarizes the specific interactions through which the respiratory tract-specific microbiome influences mucosal immunity and ultimately impacts respiratory health. Furthermore, we discuss how the microbiome affects mucosal immunity, considering tissue-specific variations, and its capacity in respiratory diseases containing asthma, chronic obstructive pulmonary disease, and lung cancer. Additionally, we investigate the external factors which affect the relationship between respiratory microbiome and mucosal immune responses. By exploring these intricate interactions, this review provides valuable insights into the potential for microbiome-based interventions to modulate mucosal immunity and alleviate the severity of respiratory diseases.

Citations

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Bacteria and fungi of the lung: allies or enemies?
Enrico Garaci, Marilena Pariano, Emilia Nunzi, Claudio Costantini, Marina Maria Bellet, Cinzia Antognelli, Matteo Antonio Russo, Luigina Romani
Frontiers in Pharmacology.2024;[Epub] CrossRef

Role of Rab GTPases in Bacteria Escaping from Vesicle Trafficking of Host Cells: Huiling Xu, Shengnan Wang, Xiaozhou Wang, Pu Zhang, Qi Zheng, ChangXi Qi, Xiaoting Liu, Muzi Li, Yongxia Liu, Jianzhu Liu; J. Microbiol. 2024;62(8):581-590. Published online August 30, 2024; DOI: https://doi.org/10.1007/s12275-024-00162-9

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Abstract: Most bacteria will use their toxins to interact with the host cell, causing damage to the cell and then escaping from it. When bacteria enter the cell, they will be transported via the endosomal pathway. Rab GTPases are involved in bacterial transport as major components of endosomes that bind to their downstream effector proteins. The bacteria manipulate some Rab GTPases, escape the cell, and get to survive. In this review, we will focus on summarizing the many processes of how bacteria manipulate Rab GTPases to control their escape.

Meta-Analysis

Exploring COVID-19 Pandemic Disparities with Transcriptomic Meta-analysis from the Perspective of Personalized Medicine: Medi Kori, Ceyda Kasavi, Kazim Yalcin Arga; J. Microbiol. 2024;62(9):785-798. Published online July 9, 2024; DOI: https://doi.org/10.1007/s12275-024-00154-9

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Abstract: Infection with SARS-CoV2, which is responsible for COVID-19, can lead to differences in disease development, severity and mortality rates depending on gender, age or the presence of certain diseases. Considering that existing studies ignore these differences, this study aims to uncover potential differences attributable to gender, age and source of sampling as well as viral load using bioinformatics and multi-omics approaches. Differential gene expression analyses were used to analyse the phenotypic differences between SARS-CoV-2 patients and controls at the mRNA level. Pathway enrichment analyses were performed at the gene set level to identify the activated pathways corresponding to the differences in the samples. Drug repurposing analysis was performed at the protein level, focusing on host-mediated drug candidates to uncover potential therapeutic differences. Significant differences (i.e. the number of differentially expressed genes and their characteristics) were observed for COVID-19 at the mRNA level depending on the sample source, gender and age of the samples. The results of the pathway enrichment show that SARS-CoV-2 can be combated more effectively in the respiratory tract than in the blood samples. Taking into account the different sample sources and their characteristics, different drug candidates were identified. Evaluating disease prediction, prevention and/or treatment strategies from a personalised perspective is crucial. In this study, we not only evaluated the differences in COVID-19 from a personalised perspective, but also provided valuable data for further experimental and clinical efforts. Our findings could shed light on potential pandemics.

Reviews

Metabolic Interaction Between Host and the Gut Microbiota During High‑Fat Diet‑Induced Colorectal Cancer: Chaeeun Lee, Seungrin Lee, Woongjae Yoo; J. Microbiol. 2024;62(3):153-165. Published online April 16, 2024; DOI: https://doi.org/10.1007/s12275-024-00123-2

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Abstract

Colorectal cancer (CRC) is the second-highest cause of cancer-associated mortality among both men and women worldwide. One of the risk factors for CRC is obesity, which is correlated with a high-fat diet prevalent in Western dietary habits. The association between an obesogenic high-fat diet and CRC has been established for several decades; however, the mechanisms by which a high-fat diet increases the risk of CRC remain unclear. Recent studies indicate that gut microbiota strongly infuence the pathogenesis of both high-fat diet-induced obesity and CRC. The gut microbiota is composed of hundreds of bacterial species, some of which are implicated in CRC. In particular, the expansion of facultative anaerobic Enterobacteriaceae, which is considered a microbial signature of intestinal microbiota functional imbalance (dysbiosis), is associated with both high-fat diet-induced obesity and CRC. Here, we review the interaction between the gut microbiome and its metabolic byproducts in the context of colorectal cancer (CRC) during high-fat diet-induced obesity. In addition, we will cover how a high-fat diet can drive the expansion of genotoxin-producing Escherichia coli by altering intestinal epithelial cell metabolism during gut infammation conditions.

Citations

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Wheat β-glucan reduces obesity and hyperlipidemia in mice with high-fat and high-salt diet by regulating intestinal flora
Min Li, Qingshan Wang, Xiuwei Zhang, Kaikai Li, Meng Niu, Siming Zhao
International Journal of Biological Macromolecules.2025; 288: 138754. CrossRef
Microbial Metabolites-induced Epigenetic Modifications for Inhibition of Colorectal Cancer: Current Status and Future Perspectives
Vaibhav Singh, Ekta Shirbhate, Rakesh Kore, Subham Vishwakarma, Shadiya Parveen, Ravichandran Veerasamy, Amit K Tiwari, Harish Rajak
Mini-Reviews in Medicinal Chemistry.2025; 25(1): 76. CrossRef
Molecular Mechanisms of Skatole-Induced Inflammatory Responses in Intestinal Epithelial Caco-2 Cells: Implications for Colorectal Cancer and Inflammatory Bowel Disease
Katsunori Ishii, Kazuma Naito, Dai Tanaka, Yoshihito Koto, Koichi Kurata, Hidehisa Shimizu
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Research Progress on the Relationship between Intestinal Flora and Gastrointestinal Malignancy
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COVID-19 vaccine development based on recombinant viral and bacterial vector systems: combinatorial effect of adaptive and trained immunity: Mi-Hyun Lee , Bum-Joon Kim; J. Microbiol. 2022;60(3):321-334. Published online February 14, 2022; DOI: https://doi.org/10.1007/s12275-022-1621-2

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Abstract

Severe acute respiratory syndrome coronavirus 2 virus (SARSCoV- 2) infection, which causes coronavirus disease 2019 (COVID-19), has led to many cases and deaths worldwide. Therefore, a number of vaccine candidates have been developed to control the COVID-19 pandemic. Of these, to date, 21 vaccines have received emergency approval for human use in at least one country. However, the recent global emergence of SARS-CoV-2 variants has compromised the efficacy of the currently available vaccines. To protect against these variants, the use of vaccines that modulate T cell-mediated immune responses or innate immune cell memory function, termed trained immunity, is needed. The major advantage of a vaccine that uses bacteria or viral systems for the delivery of COVID-19 antigens is the ability to induce both T cell-mediated and humoral immune responses. In addition, such vaccine systems can also exert off-target effects via the vector itself, mediated partly through trained immunity; compared to other vaccine platforms, suggesting that this approach can provide better protection against even vaccine escape variants. This review presents the current status of the development of COVID-19 vaccines based on recombinant viral and bacterial delivery systems. We also discuss the current status of the use of licensed live vaccines for other infections, including BCG, oral polio and MMR vaccines, to prevent COVID-19 infections.

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Fernando Santos‐Beneit
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Susan Martins Pereira, Florisneide Rodrigues Barreto, Ramon Andrade de Souza, Carlos Antonio de Souza Teles Santos, Marcos Pereira, Enny Santos da Paixão, Carla Cristina Oliveira de Jesus Lima, Marcio Santos da Natividade, Ana Angélica Bulcão Portela Lind
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Areg A. Totolian, Viacheslav S. Smirnov, Alexei A. Krasnov, Edward S. Ramsay, Vladimir G. Dedkov, Anna Y. Popova
Viruses.2023; 15(11): 2181. CrossRef
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Cellular and Epigenetic Aspects of Trained Immunity and Prospects for Creation of Universal Vaccines in the Face of Increasingly Frequent Pandemics
I. V. Alekseenko, R. G. Vasilov, L. G. Kondratyeva, S. V. Kostrov, I. P. Chernov, E. D. Sverdlov
Генетика.2023; 59(9): 981. CrossRef
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Andrés Noé, Thanh D. Dang, Christine Axelrad, Emma Burrell, Susie Germano, Sonja Elia, David Burgner, Kirsten P. Perrett, Nigel Curtis, Nicole L. Messina
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Journal of Microbiology.2022; 60(3): 235. CrossRef

Journal Article

Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi: Young Joon Oh , Joon Yong Kim , Seul Ki Lim , Min-Sung Kwon , Hak-Jong Choi; J. Microbiol. 2021;59(5):460-466. Published online April 28, 2021; DOI: https://doi.org/10.1007/s12275-021-0513-1

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Abstract

To date, all species in the genus Salicibibacter have been isolated in Korean commercial kimchi. We aimed to describe the taxonomic characteristics of two strains, NKC5-3T and NKC21-4T, isolated from commercial kimchi collected from various regions in the Republic of Korea. Cells of these strains were rod-shaped, Gram-positive, aerobic, oxidase- and catalase- positive, non-motile, halophilic, and alkalitolerant. Both strains, unlike other species of the genus Salicibibacter, could not grow without NaCl. Strains NKC5-3T and NKC21-4T could tolerate up to 25.0% (w/v) NaCl (optimum 10%) and grow at pH 7.0–10.0 (optimum 8.5) and 8.0–9.0 (optimum 8.5), respectively; they showed 97.1% 16S rRNA gene sequence similarity to each other and were most closely related to S. kimchii NKC1-1T (97.0% and 96.8% similarity, respectively). The genome of strain NKC5-3T was nearly 4.6 Mb in size, with 4,456 protein-coding sequences (CDSs), whereas NKC21-4T genome was nearly 3.9 Mb in size, with 3,717 CDSs. OrthoANI values between the novel strains and S. kimchii NKC1-1T were far lower than the species demarcation threshold. NKC5-3T and NKC21-4T clustered together to form branches that were distinct from the other Salicibibacter species. The major fatty acids in these strains were anteiso-C15:0 and anteiso-C17:0, and the predominant menaquinone was menaquinone-7. The polar lipids of NKC5-3T included diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), and five unidentified phospholipids (PL), and those of NKC21-4T included DPG, PG, seven unidentified PLs, and an unidentified lipid. Both isolates had DPG, which is the first case in the genus Salicibibacter. The genomic G + C content of strains NKC5-3T and NKC21-4T was 44.7 and 44.9 mol%, respectively. Based on phenotypic, genomic, phylogenetic, and chemotaxonomic analyses, strains NKC5-3T (= KACC 22040T = DSM 111417T) and NKC21-4T (= KACC 22041T = DSM 111418T) represent two novel species of the genus Salicibibacter, for which the names Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov. are proposed.

Citations

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Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef

Review

Rediscovery of antimicrobial peptides as therapeutic agents: Minkyung Ryu , Jaeyeong Park , Ji-Hyun Yeom , Minju Joo , Kangseok Lee; J. Microbiol. 2021;59(2):113-123. Published online February 1, 2021; DOI: https://doi.org/10.1007/s12275-021-0649-z

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Abstract

In recent years, the occurrence of antibiotic-resistant pathogens is increasing rapidly. There is growing concern as the development of antibiotics is slower than the increase in the resistance of pathogenic bacteria. Antimicrobial peptides (AMPs) are promising alternatives to antibiotics. Despite their name, which implies their antimicrobial activity, AMPs have recently been rediscovered as compounds having antifungal, antiviral, anticancer, antioxidant, and insecticidal effects. Moreover, many AMPs are relatively safe from toxic side effects and the generation of resistant microorganisms due to their target specificity and complexity of the mechanisms underlying their action. In this review, we summarize the history, classification, and mechanisms of action of AMPs, and provide descriptions of AMPs undergoing clinical trials. We also discuss the obstacles associated with the development of AMPs as therapeutic agents and recent strategies formulated to circumvent these obstacles.

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International Journal of Molecular Sciences.2024; 25(19): 10788. CrossRef
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European Journal of Medicinal Chemistry.2024; 265: 116097. CrossRef
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Expert Opinion on Drug Discovery.2023; 18(3): 287. CrossRef
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International Journal of Molecular Sciences.2023; 24(8): 6901. CrossRef
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Journal of Materials Chemistry B.2022; 10(32): 6143. CrossRef
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Pharmacology & Therapeutics.2022; 233: 108021. CrossRef
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International Journal of Peptide Research and Therapeutics.2021; 27(4): 2199. CrossRef
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Molecules.2021; 26(21): 6480. CrossRef
Microfluidic Tools for Enhanced Characterization of Therapeutic Stem Cells and Prediction of Their Potential Antimicrobial Secretome
Pasquale Marrazzo, Valeria Pizzuti, Silvia Zia, Azzurra Sargenti, Daniele Gazzola, Barbara Roda, Laura Bonsi, Francesco Alviano
Antibiotics.2021; 10(7): 750. CrossRef
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Emerenziana Ottaviano, Elisa Borghi, Laura Giovati, Monica Falleni, Delfina Tosi, Walter Magliani, Giulia Morace, Stefania Conti, Tecla Ciociola
International Journal of Molecular Sciences.2021; 22(20): 10904. CrossRef

Journal Articles

Characterization of a novel dsRNA mycovirus of Trichoderma atroviride NFCF377 reveals a member of “Fusagraviridae” with changes in antifungal activity of the host fungus: Jeesun Chun , Byeonghak Na , Dae-Hyuk Kim; J. Microbiol. 2020;58(12):1046-1053. Published online October 23, 2020; DOI: https://doi.org/10.1007/s12275-020-0380-1

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Abstract

Trichoderma atroviride is a common fungus found in various ecosystems that shows mycoparasitic ability on other fungi. A novel dsRNA virus was isolated from T. atroviride NFCF377 strain and its molecular features were analyzed. The viral genome consists of a single segmented double-stranded RNA and is 9,584 bp in length, with two discontinuous open reading frames (ORF1 and ORF2). A mycoviral structural protein and an RNA-dependent RNA polymerase (RdRp) are encoded by ORF1 and ORF2, respectively, between which is found a canonical shifty heptameric signal motif (AAAAAAC) followed by an RNA pseudoknot. Analysis of sequence similarity and phylogeny showed that it is closely related to members of the proposed family “Fusagraviridae”, with a highest similarity to the Trichoderma atroviride mycovirus 1 (TaMV1). Although the sequence similarity of deduced amino acid to TaMV1 was evident, sequence deviations were distinctive at untranslated regions (UTRs) due to the extended size. Thus, we inferred this dsRNA to be a different strain of Trichoderma atroviride mycovirus 1 (TaMV1-NFCF377). Electron microscopy image exhibited an icosahedral viral particle of 40 nm diameter. Virus-cured isogenic isolates were generated and no differences in growth rate, colony morphology, or conidia production were observed between virus-infected and virus-cured strains. However, culture filtrates of TaMV1- NFCF377-infected strain showed enhanced antifungal activity against the plant pathogen Rhizoctonia solani but not to edible mushroom Pleurotus ostreatus. These results suggested that TaMV1-NFCF377 affected the metabolism of the fungal host to potentiate antifungal compounds against a plant pathogen, but this enhanced antifungal activity appeared to be species-specific.

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Co-infection with two novel mycoviruses affects the biocontrol activity of Trichoderma polysporum
Jeesun Chun, Hae-Ryeong Yoon, Sei-Jin Lee, Dae-Hyuk Kim
Biological Control.2024; 188: 105440. CrossRef
An Outstandingly Rare Occurrence of Mycoviruses in Soil Strains of the Plant-Beneficial Fungi from the Genus Trichoderma and a Novel Polymycoviridae Isolate
Chenchen Liu, Xiliang Jiang, Zhaoyan Tan, Rongqun Wang, Qiaoxia Shang, Hongrui Li, Shujin Xu, Miguel A. Aranda, Beilei Wu, Lea Atanasova
Microbiology Spectrum.2023;[Epub] CrossRef
Sixteen Novel Mycoviruses Containing Positive Single-Stranded RNA, Double-Stranded RNA, and Negative Single-Stranded RNA Genomes Co-Infect a Single Strain of Rhizoctonia zeae
Siwei Li, Zhihao Ma, Xinyi Zhang, Yibo Cai, Chenggui Han, Xuehong Wu
Journal of Fungi.2023; 10(1): 30. CrossRef
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Miriam Schalamun, Monika Schmoll
Frontiers in Fungal Biology.2022;[Epub] CrossRef
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Subha Das, Sakae Hisano, Ana Eusebio-Cope, Hideki Kondo, Nobuhiro Suzuki
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[PROTOCOL]A Signature-Tagged Mutagenesis (STM)-based murine-infectivity assay for Cryptococcus neoformans: Kwang-Woo Jung , Kyung-Tae Lee , Yong-Sun Bahn; J. Microbiol. 2020;58(10):823-831. Published online September 29, 2020; DOI: https://doi.org/10.1007/s12275-020-0341-8

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Abstract

Signature-tagged mutagenesis (STM) is a high-throughput genetic technique that can be used to investigate the function of genes by constructing a large number of mutant strains with unique DNA identification tags, pooling them, and screening them for a particular phenotypic trait. STM was first designed for the identification of genes that contribute to the virulence or infectivity of a pathogen in its host. Recently, this
method
has also been applied for the identification of mutants with specific phenotypes, such as antifungal drug resistance and proliferation. In the present study, we describe an STM
method
for the identification of genes contributing to the infectivity of Cryptococcus neoformans using a mutant library, in which each strain was tagged with a unique DNA sequence.

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Genome-wide phenotypic profiling of transcription factors and identification of novel targets to control the virulence of Vibrio vulnificus
Dayoung Sung, Garam Choi, Minji Ahn, Hokyung Byun, Tae Young Kim, Hojun Lee, Zee-Won Lee, Ji Yong Park, Young Hyun Jung, Ho Jae Han, Sang Ho Choi
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Zinc-binding domain mediates pleiotropic functions of Yvh1 in Cryptococcus neoformans
Jae-Hyung Jin, Myung Kyung Choi, Hyun-Soo Cho, Yong-Sun Bahn
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In vitro disinfection efficacy and clinical protective effects of common disinfectants against acute hepatopancreatic necrosis disease (AHPND)-causing Vibrio isolates in Pacific white shrimp Penaeus vannamei: Peizhuo Zou , Qian Yang , Hailiang Wang , Guosi Xie , Zhi Cao , Xing Chen , Wen Gao , Jie Huang; J. Microbiol. 2020;58(8):675-686. Published online July 27, 2020; DOI: https://doi.org/10.1007/s12275-020-9537-1

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Abstract

Acute hepatopancreatic necrosis disease (AHPND) is one of the most significant bacterial diseases in global shrimp culture, causing severe economic losses. In the present study, we carried out in vitro antimicrobial tests to investigate the disinfection efficacy of 14 common disinfectants toward different AHPND-causing Vibrio spp., including eight isolates of V. parahaemolyticus, four isolates of V. campbellii, and one isolate of V. owensii. Polyhexamethylene biguanidine hydrochloride (PHMB) was revealed to possess the strongest inhibitory activity. Through analyzing and evaluating the results of antimicrobial tests and acute toxicity test, we selected PHMB and hydrogen peroxide (H2O2) for further clinical protection test. Clinical manifestations indicated that both PHMB (2 mg/L and 4 mg/L) and H2O2 (12 mg/L) could effectively protect juvenile Penaeus vannamei from the infection of V. parahaemolyticus isolate Vp362 at 106 CFU/ml, and the survival rate was over 80%. When the bacterial concentration was reduced to 105 CFU/ml, 104 CFU/ml, and 103 CFU/ml, the survival rate after treated by 1 mg/L PHMB was 64.44%, 93.33%, and 100%, respectively. According to the results, PHMB and H2O2 showed a lower toxicity while a better protection activity, particularly against a lower concentration of the pathogens. Therefore, these two disinfectants are proved to be promising disinfectants that can be applied to prevent and control AHPND in shrimp culture. Moreover, the methods of this study also provided valuable information for the prevention of other important bacterial diseases and suggested a reliable means for screening potential drugs in aquaculture.

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Burkholderia thailandensis outer membrane vesicles exert antimicrobial activity against drug-resistant and competitor microbial species: Yihui Wang , Joseph P. Hoffmann , Chau-Wen Chou , Kerstin Höner zu Bentrup , Joseph A. Fuselier , Jacob P. Bitoun , William C. Wimley , Lisa A. Morici; J. Microbiol. 2020;58(7):550-562. Published online April 11, 2020; DOI: https://doi.org/10.1007/s12275-020-0028-1

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Abstract

Gram-negative bacteria secrete outer membrane vesicles (OMVs) that play critical roles in intraspecies, interspecies, and bacteria-environment interactions. Some OMVs, such as those produced by Pseudomonas aeruginosa, have previously been shown to possess antimicrobial activity against competitor species. In the current study, we demonstrate that OMVs from Burkholderia thailandensis inhibit the growth of drug-sensitive and drug-resistant bacteria and fungi. We show that a number of antimicrobial compounds, including peptidoglycan hydrolases, 4-hydroxy-3-methyl-2-(2-nonenyl)- quinoline (HMNQ) and long-chain rhamnolipid are present in or tightly associate with B. thailandensis OMVs. Furthermore, we demonstrate that HMNQ and rhamnolipid possess antimicrobial and antibiofilm properties against methicillin- resistant Staphylococcus aureus (MRSA). These findings indicate that B. thailandensis secretes antimicrobial OMVs that may impart a survival advantage by eliminating competition. In addition, bacterial OMVs may represent an untapped resource of novel therapeutics effective against biofilm- forming and multidrug-resistant organisms.

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Leila Pourtalebi Jahromi, Gregor Fuhrmann
Advanced Drug Delivery Reviews.2021; 173: 125. CrossRef
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Role of putative virulence traits of Campylobacter jejuni in regulating differential host immune responses: Ankita Singh , Amirul Islam Mallick; J. Microbiol. 2019;57(4):298-309. Published online February 22, 2019; DOI: https://doi.org/10.1007/s12275-019-8165-0

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Abstract

Among the major enteric pathogens, Campylobacter jejuni is considered an important source of diarrheal illness in humans. In contrast to the acute gastroenteritis in humans, C. jejuni exhibits prolonged cecal colonization at a high level with little or no pathology in chickens. Although several known virulence determinants of C. jejuni have been found to be associated with a higher degree of pathogenesis in humans, to date, little is known about their functions in the persistent colonization of chickens. The present study was undertaken to assess the role of C. jejuni in imparting differential host immune responses in human and chicken cells. Based on the abundance of major genes encoding virulence factors (GEVFs), we used a particular isolate that harbors the cadF, flaA, peb1, racR, ciaB, cdtB, and hcp genes. This study showed that hypervirulent C. jejuni isolate that encodes a functional type VI secretion system (T6SS) has a greater ability to invade and create characteristic “attaching and effacing” lesions in human INT407 compared to primary chicken embryo intestinal cells (CEICs). Furthermore, we demonstrated that the higher bacterial invasion in human INT407 triggered higher levels of expression of major proinflammatory cytokines, such as IL- 1β and IL-6, and significant downregulation of IL-17A gene expression (P ≤ 0.05). The findings of the present study suggest that the enhanced ability of C. jejuni to invade human cells is tightly regulated by proinflammatory cytokines in the gut and possibly holds the keys to the observed differences in pathogenesis between human and chicken cells.

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[PROTOCOL] Drosophila melanogaster as a polymicrobial infection model for Pseudomonas aeruginosa and Staphylococcus aureus: Young-Joon Lee , Hye-Jeong Jang , In-Young Chung , You-Hee Cho; J. Microbiol. 2018;56(8):534-541. Published online July 25, 2018; DOI: https://doi.org/10.1007/s12275-018-8331-9

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Abstract

Non-mammalian infection models have been developed over the last two decades, which is a historic milestone to understand the molecular basis of bacterial pathogenesis. They also provide small-scale research platforms for identification of virulence factors, screening for antibacterial hits, and evaluation of antibacterial efficacy. The fruit fly, Drosophila melanogaster is one of the model hosts for a variety of bacterial pathogens, in that the innate immunity pathways and tissue physiology are highly similar to those in mammals. We here present a relatively simple protocol to assess the key aspects of the polymicrobial interaction in vivo between the human opportunistic pathogens, Pseudomonas aeruginosa and Staphylococcus aureus, which is based on the systemic infection by needle pricking at the dorsal thorax of the flies. After infection, fly survival and bacteremia over time for both P. aeruginosa and S. aureus within the infected flies can be monitored as a measure of polymicrobial virulence potential. The infection takes ~24 h including bacterial cultivation. Fly survival and bacteremia are assessed using the infected flies that are monitored up to ~60 h post-infection. These methods can be used to identify presumable as well as unexpected phenotypes during polymicrobial interaction between P. aeruginosa and S. aureus mutants, regarding bacterial pathogenesis and host immunity.

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Review

REVIEW] The Ruminococci: key symbionts of the gut ecosystem: Alex J. La Reau , Garret Suen; J. Microbiol. 2018;56(3):199-208. Published online February 28, 2018; DOI: https://doi.org/10.1007/s12275-018-8024-4

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Abstract

Mammalian gut microbial communities form intricate mutualisms with their hosts, which have profound implications on overall health. One group of important gut microbial mutualists are bacteria in the genus Ruminococcus, which serve to degrade and convert complex polysaccharides into a variety of nutrients for their hosts. Isolated decades ago from the bovine rumen, ruminococci have since been cultured from other ruminant and non-ruminant sources, and next-generation sequencing has further shown their distribution to be widespread in a diversity of animal hosts. While most ruminococci that have been studied are those capable of degrading cellulose, much less is known about non-cellulolytic, nonruminant- associated species, such as those found in humans. Furthermore, a mechanistic understanding of the role of Ruminococcus spp. in their respective hosts is still a work in progress. This review highlights the broad work done on species within the genus Ruminococcus with respect to their physiology, phylogenetic relatedness, and their potential impact on host health.

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Renewable and Sustainable Energy Reviews.2025; 207: 114913. CrossRef
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European Journal of Pharmacology.2025; 987: 177172. CrossRef
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Pharmaceutical Biology.2024; 62(1): 423. CrossRef
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Animals.2024; 14(16): 2334. CrossRef
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mSystems.2024;[Epub] CrossRef
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mSystems.2024;[Epub] CrossRef
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Chunyan Hou, Lianjia Zhao, Muhua Ji, Jingjing Yu, Yan Di, Qian Liu, Zhengmao Zhang, Lijun Sun, Xuebo Liu, Yutang Wang
Food Chemistry.2024; 457: 140124. CrossRef
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Journal of Agricultural and Food Chemistry.2024; 72(3): 1592. CrossRef
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Animals.2024; 14(13): 1913. CrossRef
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Microorganisms.2024; 12(3): 463. CrossRef
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PLOS ONE.2024; 19(2): e0296407. CrossRef
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Poultry Science.2024; 103(4): 103562. CrossRef
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Environmental Research.2024; 263: 120040. CrossRef
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Environment International.2024; 190: 108805. CrossRef
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Journal of Applied Physiology.2024; 137(5): 1374. CrossRef
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Animals.2024; 14(17): 2614. CrossRef
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International Journal of Molecular Sciences.2023; 24(3): 2845. CrossRef
Ligularia virgaurea improved nutrient digestion, ruminal fermentation, and bacterial composition in Tibetan sheep grazing on the Qinghai–Tibetan plateau in winter
Xiongxiong Cui, Zhaofeng Wang, Qingshan Fan, Shenghua Chang, Tianhai Yan, Fujiang Hou
Animal Feed Science and Technology.2023; 299: 115628. CrossRef
Characterization of the Gut Microbiota in Urban Thai Individuals Reveals Enterotype-Specific Signature
Jiramaetha Sinsuebchuea, Prasobsook Paenkaew, Montree Wutthiin, Thatchawanon Nantanaranon, Kiattiyot Laeman, Weerayuth Kittichotirat, Songsak Wattanachaisaereekul, Sudarat Dulsawat, Montira Nopharatana, Namol Vorapreeda, Sakarindr Bhumiratana, Supapon Che
Microorganisms.2023; 11(1): 136. CrossRef
Lignocellulose degradation by rumen bacterial communities: New insights from metagenome analyses
Javad Gharechahi, Mohammad Farhad Vahidi, Golandam Sharifi, Shohreh Ariaeenejad, Xue-Zhi Ding, Jian-Lin Han, Ghasem Hosseini Salekdeh
Environmental Research.2023; 229: 115925. CrossRef
Associations between the Gut Microbiome and Migraines in Children Aged 7-18 Years: An Analysis of the American Gut Project Cohort
Jinbing Bai, Natalie Shen, Yanqun Liu
Pain Management Nursing.2023; 24(1): 35. CrossRef
Invited review: Rumen modifiers in today's dairy rations
J.L. Firkins, K.E. Mitchell
Journal of Dairy Science.2023; 106(5): 3053. CrossRef
Exploration of the Gut Microbiome in Thai Patients with Major Depressive Disorder Shows a Specific Bacterial Profile with Depletion of the Ruminococcus Genus as a Putative Biomarker
Michael Maes, Asara Vasupanrajit, Ketsupar Jirakran, Pavit Klomkliew, Prangwalai Chanchaem, Chavit Tunvirachaisakul, Sunchai Payungporn
Cells.2023; 12(9): 1240. CrossRef
Associations between Accelerometer-Measured Physical Activity and Fecal Microbiota in Adults with Overweight and Obesity
RILEY L. HUGHES, DOMINIKA M. PINDUS, NAIMAN A. KHAN, NICHOLAS A. BURD, HANNAH D. HOLSCHER
Medicine & Science in Sports & Exercise.2023; 55(4): 680. CrossRef
Revealing the developmental characterization of rumen microbiome and its host in newly received cattle during receiving period contributes to formulating precise nutritional strategies
Yanjiao Li, Kang Mao, Yitian Zang, Guwei Lu, Qinghua Qiu, Kehui Ouyang, Xianghui Zhao, Xiaozhen Song, Lanjiao Xu, Huan Liang, Mingren Qu
Microbiome.2023;[Epub] CrossRef
Analysis of microbial colonies from the first-pass meconium of healthy neonates: Comparison of vaginally and cesarean section born
Hueng-Chuen Fan, Ying-Ru Pan, Pei-Ling Lai, Win-Lin Yeh, Shu-Wei Hu, Ming-Yuan Hsu, Wei-Kian Chua
Tungs' Medical Journal.2023; 17(2): 76. CrossRef
Food desert residence has limited impact on veteran fecal microbiome composition: a U.S. Veteran Microbiome Project study
Diana P. Brostow, Meghan Donovan, Molly Penzenik, Christopher E. Stamper, Talia Spark, Christopher A. Lowry, Suzanne L. Ishaq, Andrew J. Hoisington, Lisa A. Brenner, Thomas J. Sharpton
mSystems.2023;[Epub] CrossRef
The gut microbiome dysbiosis is recovered by restoring a normal diet in hypercholesterolemic pigs
Leonie Schoch, Pablo Sutelman, Rosa Suades, Lina Badimon, Isabel Moreno‐Indias, Gemma Vilahur
European Journal of Clinical Investigation.2023;[Epub] CrossRef
Partially Alternative Feeding with Fermented Distillers’ Grains Modulates Gastrointestinal Flora and Metabolic Profile in Guanling Cattle
Guangxia He, Chao Chen, Shihui Mei, Ze Chen, Rong Zhang, Tiantian Zhang, Duhan Xu, Mingming Zhu, Xiaofen Luo, Chengrong Zeng, Bijun Zhou, Kaigong Wang, Erpeng Zhu, Zhentao Cheng
Animals.2023; 13(22): 3437. CrossRef
Dysbiosis in gastrointestinal pathophysiology: Role of the gut microbiome in Gulf War Illness
Elise Slevin, Sachiko Koyama, Kelly Harrison, Ying Wan, James E. Klaunig, Chaodong Wu, Ashok K. Shetty, Fanyin Meng
Journal of Cellular and Molecular Medicine.2023; 27(7): 891. CrossRef
Gastrointestinal Degradation and Toxicity of Disinfection Byproducts in Drinking Water Using In Vitro Models and the Roles of Gut Microbiota
Jinbao Yin, Dingxin Li, Tianming Zheng, Bin Hu, Peifang Wang
Environmental Science & Technology.2023; 57(43): 16219. CrossRef
Enhanced lupus progression in alcohol‐administered Fc gamma receptor‐IIb–deficiency lupus mice, partly through leaky gut‐induced inflammation
Wiwat Chancharoenthana, Supitcha Kamolratanakul, Phatcharapon Yiengwattananon, Pornpimol Phuengmaung, Kanyarat Udompornpitak, Wilasinee Saisorn, Pratsanee Hiengrach, Peerapat Visitchanakun, Marcus J Schultz, Asada Leelahavanichkul
Immunology & Cell Biology.2023; 101(8): 746. CrossRef
Deciphering salivary microbiome signature in Crohn’s disease patients with different factors contributing to dysbiosis
Hala Elzayat, Talha Malik, Haifa Al-Awadhi, Mazen Taha, Gehad Elghazali, Farah Al-Marzooq
Scientific Reports.2023;[Epub] CrossRef
Apolipoprotein E gene variants shape the association between dietary fibre intake and cognitive decline risk in community-dwelling older adults
Andrea Unión-Caballero, Tomás Meroño, Cristina Andrés-Lacueva, Nicole Hidalgo-Liberona, Montserrat Rabassa, Stefania Bandinelli, Luigi Ferrucci, Massimiliano Fedecostante, Raúl Zamora-Ros, Antonio Cherubini
Age and Ageing.2023;[Epub] CrossRef
Alfalfa hay substitution for wheat straw improves beef quality via rumen microflora alteration
Zimin Gao, Boshuai Liu, Shaokai La, Defeng Li, Xiaoyan Zhu, Hao Sun, Sen Ma, Yalei Cui, Yinghua Shi
Heliyon.2023; 9(10): e20803. CrossRef
Altered gut microbiota in older adults with mild cognitive impairment: a case-control study
Kang-Chen Fan, Chen-Ching Lin, Yi-Chien Liu, Yi-Ping Chao, Yen-Jun Lai, Yen-Ling Chiu, Yi-Fang Chuang
Frontiers in Aging Neuroscience.2023;[Epub] CrossRef
Changes of gut microbiota under different nutritional methods in elderly patients with severe COVID-19 and their relationship with prognosis
Jiawei Zhang, Jiaxin Deng, Juan Li, Yuping Su, Jiancong Hu, Dezheng Lin, Mingli Su, Yongcheng Chen, Sen Liao, Xuhao Bai, Miwei Lv, Tian Xu, Qinghua Zhong, Xuefeng Guo
Frontiers in Immunology.2023;[Epub] CrossRef
Stall-Feeding of Sheep on Restricted Grazing: Effects on Performance and Serum Metabolites, Ruminal Fermentation, and Fecal Microbiota
Mengyu Zhao, Xiaoan Zhang, Yao Chen, Chunhuan Ren, Yiming Sun, Penghui Wang, Xiao Cheng, Zijun Zhang, Jiahong Chen, Yafeng Huang
Animals.2023; 13(16): 2644. CrossRef
Causal Link between Gut Microbiota, Neurophysiological States, and Bone Diseases: A Comprehensive Mendelian Randomization Study
Shaoting Luo, Zhiyang Chen, Linfang Deng, Yufan Chen, Weizheng Zhou, Federico Canavese, Lianyong Li
Nutrients.2023; 15(18): 3934. CrossRef
Individual and combined effects of fluoride and arsenic on gut bacteria: a recent update
Sunanda Mukherjee, Olivia Sarkar, Ansuman Chattopadhyay
The Nucleus.2023;[Epub] CrossRef
Microbe-mineral interactions in the Plastisphere: Coastal biogeochemistry and consequences for degradation of plastics
Maya S. Dodhia, Kelsey L. Rogers, Victor Fernández-Juárez, Joan A. Carreres-Calabuig, Carolin R. Löscher, Amandine A. Tisserand, Nynke Keulen, Lasse Riemann, Yvonne Shashoua, Nicole R. Posth
Frontiers in Marine Science.2023;[Epub] CrossRef
Different roles of host and habitat in determining the microbial communities of plant-feeding true bugs
Zi-Wen Yang, Jiu-Yang Luo, Yu Men, Zhi-Hui Liu, Zi-Kai Zheng, Yan-Hui Wang, Qiang Xie
Microbiome.2023;[Epub] CrossRef
Gut Microbiome Transplants and Their Health Impacts across Species
Benjamin H. Levine, Jessica M. Hoffman
Microorganisms.2023; 11(6): 1488. CrossRef
Causal effects of gut microbiome on autoimmune liver disease: a two-sample Mendelian randomization study
Yugang Fu, Jiacheng Li, Yingying Zhu, Chong Chen, Jing Liu, Simin Gu, Yiyuan Zheng, Yong Li
BMC Medical Genomics.2023;[Epub] CrossRef
Targeting gut microbiota to alleviate neuroinflammation in Alzheimer’s disease
Vu Thu Thuy Nguyen, Kristina Endres
Advanced Drug Delivery Reviews.2022; 188: 114418. CrossRef
Host Species Affects Bacterial Evenness, but Not Diversity: Comparison of Fecal Bacteria of Cows and Goats Offered the Same Diet
Tiziana Maria Mahayri, Kateřina Olša Fliegerová, Silvana Mattiello, Stefania Celozzi, Jakub Mrázek, Chahrazed Mekadim, Hana Sechovcová, Simona Kvasnová, Elie Atallah, Giuseppe Moniello
Animals.2022; 12(16): 2011. CrossRef
Zinc Biofortified Cowpea (Vigna unguiculata L. Walp.) Soluble Extracts Modulate Assessed Cecal Bacterial Populations and Gut Morphology In Vivo (Gallus gallus)
Mariana Juste Contin Gomes, Hércia Stampini Duarte Martino, Nikolai Kolba, Jacquelyn Cheng, Nikita Agarwal, Maurisrael de Moura Rocha, Elad Tako
Frontiers in Bioscience-Landmark.2022;[Epub] CrossRef
Microbial gut evaluation in an angolan paediatric population with sickle cell disease
Mariana Delgadinho, Catarina Ginete, Brígida Santos, Joana Mendes, Armandina Miranda, Jocelyne Vasconcelos, Miguel Brito
Journal of Cellular and Molecular Medicine.2022; 26(21): 5360. CrossRef
Survival Strategies and Metabolic Interactions between Ruminococcus gauvreauii and Ruminococcoides bili , Isolated from Human Bile
Natalia Molinero, Elena Conti, Alan W. Walker, Abelardo Margolles, Sylvia H. Duncan, Susana Delgado, Jeffrey A. Gralnick
Microbiology Spectrum.2022;[Epub] CrossRef
Chlorogenic acid improves growth performance of weaned rabbits via modulating the intestinal epithelium functions and intestinal microbiota
Jiali Chen, Zhicheng Song, Rongmei Ji, Yongxu Liu, Hong Zhao, Lei Liu, Fuchang Li
Frontiers in Microbiology.2022;[Epub] CrossRef
Changes to the microbiome of alfalfa during the growing season and after ensiling with Lentilactobacillus buchneri and Lentilactobacillus hilgardii inoculant
Pascal Drouin, Julien Tremblay, Érica Benjamim da Silva, Emmanuelle Apper
Journal of Applied Microbiology.2022; 133(4): 2331. CrossRef
Evaluation of Antioxidant Capacity and Gut Microbiota Modulatory Effects of Different Kinds of Berries
Jiebiao Chen, Yichen Shu, Yanhong Chen, Zhiwei Ge, Changfeng Zhang, Jinping Cao, Xian Li, Yue Wang, Chongde Sun
Antioxidants.2022; 11(5): 1020. CrossRef
Altered Immunoglobulin Repertoire and Decreased IgA Somatic Hypermutation in the Gut during Chronic HIV-1 Infection
Sean T. Jones, Kejun Guo, Emily H. Cooper, Stephanie M. Dillon, Cheyret Wood, David H. Nguyen, Guannan Shen, Bradley S. Barrett, Daniel N. Frank, Miranda Kroehl, Edward N. Janoff, Katerina Kechris, Cara C. Wilson, Mario L. Santiago, Frank Kirchhoff
Journal of Virology.2022;[Epub] CrossRef
Effects of lactic acid-producing bacteria as direct-fed microbials on the ruminal microbiome
H.F. Monteiro, A.L.J. Lelis, P. Fan, B. Calvo Agustinho, R.R. Lobo, J.A. Arce-Cordero, X. Dai, K.C. Jeong, A.P. Faciola
Journal of Dairy Science.2022; 105(3): 2242. CrossRef
Saccharomyces cerevisiae boulardiiCNCM I-1079 supplementation in finishing male pigs helps to cope with heat stress through feeding behaviour and gut microbiota modulation
Etienne Labussière, Caroline Achard, Serge Dubois, Sylvie Combes, Mathieu Castex, David Renaudeau
British Journal of Nutrition.2022; 127(3): 353. CrossRef
Specific Alterations of Gut Microbiota in Chinese Patients with Hypertension: A Systematic Review and Meta-Analysis
Yunlong Qin, Jin Zhao, Yuwei Wang, Ming Bai, Shiren Sun
Kidney and Blood Pressure Research.2022; 47(7): 433. CrossRef
2-Hydroxy-4-(Methylthio) Butanoic Acid Isopropyl Ester Supplementation Altered Ruminal and Cecal Bacterial Composition and Improved Growth Performance of Finishing Beef Cattle
Xiaoli Qin, Depeng Zhang, Xinjun Qiu, Kai Zhao, Siyu Zhang, Chunlan Liu, Lianqiang Lu, Yafang Cui, Changxiao Shi, Zhiming Chen, Rikang Hao, Yingqi Li, Shunran Yang, Lina Wang, Huili Wang, Binghai Cao, Huawei Su
Frontiers in Nutrition.2022;[Epub] CrossRef
Heat Stress Affects Jejunal Immunity of Yellow-Feathered Broilers and Is Potentially Mediated by the Microbiome
Wen-Chao Liu, Meng-Yi Huang, Balamuralikrishnan Balasubramanian, Rajesh Jha
Frontiers in Physiology.2022;[Epub] CrossRef
Red Raspberry and Fructo-Oligosaccharide Supplementation, Metabolic Biomarkers, and the Gut Microbiota in Adults with Prediabetes: A Randomized Crossover Clinical Trial
Xuhuiqun Zhang, Anqi Zhao, Amandeep K Sandhu, Indika Edirisinghe, Britt M Burton-Freeman
The Journal of Nutrition.2022; 152(6): 1438. CrossRef
Effects of acetate, propionate, and pH on volatile fatty acid thermodynamics in continuous cultures of ruminal contents
Meng M. Li, S. Ghimire, B.A. Wenner, R.A. Kohn, J.L. Firkins, B. Gill, M.D. Hanigan
Journal of Dairy Science.2022; 105(11): 8879. CrossRef
Contribution of gut microbiomes and their metabolomes to the performance of Dorper and Tan sheep
Yuhao Ma, Xue Yang, Guoying Hua, Xiaotian Deng, Tianlan Xia, Xinhai Li, Dengzhen Feng, Xuemei Deng
Frontiers in Microbiology.2022;[Epub] CrossRef
Spotlight on the Gut Microbiome in Menopause: Current Insights
Brandilyn Peters, Nanette Santoro, Robert Kaplan, Qibin Qi
International Journal of Women's Health.2022; Volume 14: 1059. CrossRef
Combinations of bacterial cultures, exogenous enzymes, and yeast-based feed additives and their impact on ruminal microbiome
J A Arce-Cordero, S L Bennett, T Liu, A Ravelo, R R Lobo, K C Jeong, A P Faciola
Translational Animal Science.2022;[Epub] CrossRef
Ingestion of remediated lead-contaminated soils affects the fecal microbiome of mice
S. Elizabeth George, Joseph James, Richard Devereux, Yongshan Wan, Gary L. Diamond, Karen D. Bradham, Kirk G. Scheckel, David J. Thomas
Science of The Total Environment.2022; 837: 155797. CrossRef
Exposure to crop production alters cecal prokaryotic microbiota, inflates virulome and resistome in wild prairie grouse
Serguei V. Drovetski, Brian K. Schmidt, Jonas E. Lai, Michael S. Gross, Michelle L. Hladik, Kenan O. Matterson, Natalie K. Karouna-Renier
Environmental Pollution.2022; 306: 119418. CrossRef
Saccharomyces Boulardii Ameliorates Non-alcoholic Steatohepatitis in Mice Induced by a Methionine-Choline-Deficient Diet Through Gut-Liver Axis
An-Ming Yang, Chien-Yu Lin, Shih-Hao Liu, Guan-Da Syu, Hao-Jhe Sun, Kuei-Chuan Lee, Han-Chieh Lin, Ming-Chih Hou
Frontiers in Microbiology.2022;[Epub] CrossRef
Intestinal Dysbiosis in Patients with Histamine Intolerance
Sònia Sánchez-Pérez, Oriol Comas-Basté, Adriana Duelo, M. Teresa Veciana-Nogués, Mercedes Berlanga, M. Luz Latorre-Moratalla, M. Carmen Vidal-Carou
Nutrients.2022; 14(9): 1774. CrossRef
Cellulolytic bacteria in the large intestine of mammals
Alicia Froidurot, Véronique Julliand
Gut Microbes.2022;[Epub] CrossRef
Muskoxen homogenise soil microbial communities and affect the abundance of methanogens and methanotrophs
Marie Rønne Aggerbeck, Tue Kjærgaard Nielsen, Jesper Bruun Mosbacher, Niels Martin Schmidt, Lars Hestbjerg Hansen
Science of The Total Environment.2022; 827: 153877. CrossRef
Integrated Fecal Microbiome and Metabolomics Reveals a Novel Potential Biomarker for Predicting Tibial Dyschondroplasia in Chickens
Shucheng Huang, Chaodong Zhang, Tingting Xu, Aftab Shaukat, Yanfeng He, Pan Chen, Luxi Lin, Ke Yue, Qinqin Cao, Xishuai Tong
Frontiers in Physiology.2022;[Epub] CrossRef
Comparison of Metabolites and Gut Microbes between Patients with Ulcerative Colitis and Healthy Individuals for an Integrative Medicine Approach to Ulcerative Colitis—A Pilot Observational Clinical Study (STROBE Compliant)
Cheol-Hyun Kim, Young-Ung Lee, Kwang-Ho Kim, Sunny Kang, Geon-Hui Kang, Hongmin Chu, Sangkwan Lee
Diagnostics.2022; 12(8): 1969. CrossRef
The association of hyperketonemia with fecal and rumen microbiota at time of diagnosis in a case-control cohort of early lactation cows
Asha M. Miles, Jessica A. A. McArt, Svetlana F. Lima, Rafael C. Neves, Erika Ganda
BMC Veterinary Research.2022;[Epub] CrossRef
Gut metagenome profile of the Nunavik Inuit youth is distinct from industrial and non-industrial counterparts
Jehane Y. Abed, Thibaud Godon, Fadwa Mehdaoui, Pier-Luc Plante, Maurice Boissinot, Michel G. Bergeron, Richard E. Bélanger, Gina Muckle, Natalia Poliakova, Pierre Ayotte, Jacques Corbeil, Elsa Rousseau
Communications Biology.2022;[Epub] CrossRef
The influence of exercise training volume alterations on the gut microbiome in highly‐trained middle‐distance runners
Jonathan Craven, Amanda J. Cox, Phillip Bellinger, Ben Desbrow, Christopher Irwin, Jena Buchan, Danielle McCartney, Surendran Sabapathy
European Journal of Sport Science.2022; 22(8): 1222. CrossRef
Hypomagnetic Field Exposure Affecting Gut Microbiota, Reactive Oxygen Species Levels, and Colonic Cell Proliferation in Mice
Aisheng Zhan, Yukai Luo, Huafeng Qin, Wei Lin, Lanxiang Tian
Bioelectromagnetics.2022; 43(8): 462. CrossRef
Analysis of 16S rRNA gene sequencing data for the taxonomic characterization of the vaginal and the fecal microbial communities in Hanwoo
Soyoung Choi, Jihye Cha, Minji Song, JuHwan Son, Mi-Rim Park, Yeong-jo Lim, Tae-Hun Kim, Kyung-Tai Lee, Woncheoul Park
Animal Bioscience.2022; 35(11): 1808. CrossRef
Paeonia lactiflora Pallas extract alleviates antibiotics and DNCB-induced atopic dermatitis symptoms by suppressing inflammation and changing the gut microbiota composition in mice
Seo Yeon Lee, Se Hyang Hong, Hyo In Kim, Jin Mo Ku, Yu-Jeong Choi, Min-Jeong Kim, Seong-Gyu Ko
Biomedicine & Pharmacotherapy.2022; 154: 113574. CrossRef
Influence of free and immobilized chitosan on a defined human gut microbial ecosystem
María Ruiz-Rico, Simone Renwick, Sarah J. Vancuren, Avery V. Robinson, Connor Gianetto-Hill, Emma Allen-Vercoe, José M. Barat
Food Research International.2022; 161: 111890. CrossRef
How to Maintain a Healthy Gut Microbiome in Children with Cancer? Gut Microbiome Association with Diet in Children with Solid Tumors Postchemotherapy
Shuqi Zhou, Melissa Martin, Christie Powell, Kathryn S. Sutton, Bradley George, Thomas Olson, Konstantinos T. Konstantinidis, Deborah W. Bruner, Jinbing Bai
OMICS: A Journal of Integrative Biology.2022; 26(4): 236. CrossRef
Influence of Chlorella vulgaris on growth, digestibility and gut morphology and microbiota of weaned piglet
Cátia F. Martins, Paolo Trevisi, Diogo F. Coelho, Federico Correa, David M. Ribeiro, Cristina M. Alfaia, Mário Pinho, José M. Pestana, Miguel P. Mourato, André M. Almeida, Carlos M. G. A. Fontes, João P. B. Freire, José A. M. Prates
Scientific Reports.2022;[Epub] CrossRef
Comparative analysis of gut microbial composition and potential functions in captive forest and alpine musk deer
Feng Jiang, Pengfei Song, Haijing Wang, Jingjie Zhang, Daoxin Liu, Zhenyuan Cai, Hongmei Gao, Xiangwen Chi, Tongzuo Zhang
Applied Microbiology and Biotechnology.2022; 106(3): 1325. CrossRef
Seasonal and geographical differences in the ruminal microbial and chloroplast composition of sika deer (Cervus nippon) in Japan
Shinpei Kawarai, Kensuke Taira, Ayako Shimono, Tsuyoshi Takeshita, Shiro Takeda, Wataru Mizunoya, Yumiko Yamazaki, Shigeharu Moriya, Masato Minami
Scientific Reports.2022;[Epub] CrossRef
Consistent Alterations of Human Fecal Microbes After Transplantation into Germ-Free Mice
Yanze Li, Wenming Cao, Na L Gao, Xing-Ming Zhao, Wei-Hua Chen
Genomics, Proteomics & Bioinformatics.2022; 20(2): 382. CrossRef
Meconium Microbiota Composition and Association with Birth Delivery Mode
Ana K. Rocha-Viggiano, Saray Aranda-Romo, Mariana Salgado-Bustamante, Cesaré Ovando-Vázquez, Jian Wu
Advanced Gut & Microbiome Research.2022; 2022: 1. CrossRef
Characterization of presence and activity of microRNAs in the rumen of cattle hints at possible host-microbiota cross-talk mechanism
Sara Ricci, Renée M. Petri, Cátia Pacífico, Ezequias Castillo-Lopez, Raul Rivera-Chacon, Arife Sener-Aydemir, Nicole Reisinger, Qendrim Zebeli, Susanne Kreuzer-Redmer
Scientific Reports.2022;[Epub] CrossRef
Commensal Intestinal Protozoa—Underestimated Members of the Gut Microbial Community
Magdalena Dubik, Bartosz Pilecki, Jesper Bonnet Moeller
Biology.2022; 11(12): 1742. CrossRef
Fecal microbiome of horses transitioning between warm-season and cool-season grass pasture within integrated rotational grazing systems
Jennifer R. Weinert-Nelson, Amy S. Biddle, Carey A. Williams
Animal Microbiome.2022;[Epub] CrossRef
The gut microbiota as a target to improve health conditions in a confined environment
Zheng Chen, ZiYing Wang, Dan Li, Beiwei Zhu, Yongjun Xia, Guangqiang Wang, Lianzhong Ai, Chunhong Zhang, Chuan Wang
Frontiers in Microbiology.2022;[Epub] CrossRef
Characterization of rumen, fecal, and milk microbiota in lactating dairy cows
Jenna R. Williamson, Todd R. Callaway, Jeferson M. Lourenco, Valerie E. Ryman
Frontiers in Microbiology.2022;[Epub] CrossRef
Analysis of Faecal Microbiota and Small ncRNAs in Autism: Detection of miRNAs and piRNAs with Possible Implications in Host–Gut Microbiota Cross-Talk
Federica Chiappori, Francesca Anna Cupaioli, Arianna Consiglio, Noemi Di Nanni, Ettore Mosca, Vito Flavio Licciulli, Alessandra Mezzelani
Nutrients.2022; 14(7): 1340. CrossRef
Microbiota Composition of Mucosa and Interactions between the Microbes of the Different Gut Segments Could Be a Factor to Modulate the Growth Rate of Broiler Chickens
Valéria Farkas, Gábor Csitári, László Menyhárt, Nikoletta Such, László Pál, Ferenc Husvéth, Mohamed Ali Rawash, Ákos Mezőlaki, Károly Dublecz
Animals.2022; 12(10): 1296. CrossRef
Comparative Analysis of Gut Microbial Composition and Functions in Przewalski’s Gazelle (Procapra przewalskii) From Various Habitats
Jingjie Zhang, Hongmei Gao, Feng Jiang, Daoxin Liu, Yuansheng Hou, Xiangwen Chi, Wen Qin, Pengfei Song, Zhenyuan Cai, Tongzuo Zhang
Frontiers in Microbiology.2022;[Epub] CrossRef
The primate gut mycobiome-bacteriome interface is impacted by environmental and subsistence factors
Ashok K. Sharma, Sam Davison, Barbora Pafco, Jonathan B. Clayton, Jessica M. Rothman, Matthew R. McLennan, Marie Cibot, Terence Fuh, Roman Vodicka, Carolyn Jost Robinson, Klara Petrzelkova, Andres Gomez
npj Biofilms and Microbiomes.2022;[Epub] CrossRef
A high-risk gut microbiota configuration associates with fatal hyperinflammatory immune and metabolic responses to SARS-CoV-2
Werner C. Albrich, Tarini Shankar Ghosh, Sinead Ahearn-Ford, Flora Mikaeloff, Nonhlanhla Lunjani, Brian Forde, Noémie Suh, Gian-Reto Kleger, Urs Pietsch, Manuel Frischknecht, Christian Garzoni, Rossella Forlenza, Mary Horgan, Corinna Sadlier, Tommaso Roch
Gut Microbes.2022;[Epub] CrossRef
Gut Health and Microbiota in Out-of-Season Atlantic Salmon (Salmo salar L.) Smolts Before and After Seawater Transfer Under Commercial Arctic Conditions: Modulation by Functional Feed Ingredients
Jie Wang, Alexander Jaramillo-Torres, Yanxian Li, Øyvind Jakobsen Brevik, Jan Vidar Jakobsen, Trond M. Kortner, Åshild Krogdahl
Frontiers in Marine Science.2022;[Epub] CrossRef
Bacterial communities in the gastrointestinal tract segments of helminth-resistant and helminth-susceptible sheep
Erwin A. Paz, Eng Guan Chua, Shamshad Ul Hassan, Johan C. Greeff, Dieter G. Palmer, Shimin Liu, Binit Lamichhane, Néstor Sepúlveda, Junhua Liu, Chin Yen Tay, Graeme B. Martin
Animal Microbiome.2022;[Epub] CrossRef
Effects of spatially heterogeneous warming on gut microbiota, nutrition and gene flow of a heat-sensitive ungulate population
Shiyu Chen, Marcel Holyoak, Hui Liu, Heng Bao, Yingjie Ma, Hongliang Dou, Guangshun Jiang
Science of The Total Environment.2022; 806: 150537. CrossRef
Albuca Bracteate Polysaccharides Synergistically Enhance the Anti-Tumor Efficacy of 5-Fluorouracil Against Colorectal Cancer by Modulating β-Catenin Signaling and Intestinal Flora
Xinyu Yuan, Jiao Xue, Yingxia Tan, Qingguo Yang, Ziyan Qin, Xiaodong Bao, Shengkai Li, Liangliang Pan, Ziqing Jiang, Yu Wang, Yongliang Lou, Lei Jiang, Jimei Du
Frontiers in Pharmacology.2021;[Epub] CrossRef
The Impact of Enriched Resistant Starch Type‐2 Cookies on the Gut Microbiome in Hemodialysis Patients: A Randomized Controlled Trial
Julie Ann Kemp, Bruna Regis de Paiva, Henrique Fragoso dos Santos, Hugo Emiliano de Jesus, Hannah Craven, Umer Z. Ijaz, Natalia Alvarenga Borges, Paul G. Shiels, Denise Mafra
Molecular Nutrition & Food Research.2021;[Epub] CrossRef
Gut microbiota alterations are distinct for primary colorectal cancer and hepatocellular carcinoma
Wei Jia, Cynthia Rajani, Hongxi Xu, Xiaojiao Zheng
Protein & Cell.2021; 12(5): 374. CrossRef
Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets
Kasun H. Bodawatta, Inga Freiberga, Katerina Puzejova, Katerina Sam, Michael Poulsen, Knud A. Jønsson
Animal Microbiome.2021;[Epub] CrossRef
Ruminococcoides bili gen. nov., sp. nov., a bile-resistant bacterium from human bile with autolytic behavior
Natalia Molinero, Elena Conti, Borja Sánchez, Alan W. Walker, Abelardo Margolles, Sylvia H. Duncan, Susana Delgado
International Journal of Systematic and Evolutionary Microbiology.2021;[Epub] CrossRef
The potential of outdoor environments to supply beneficial butyrate-producing bacteria to humans
Joel E. Brame, Craig Liddicoat, Catherine A. Abbott, Martin F. Breed
Science of The Total Environment.2021; 777: 146063. CrossRef
A new landscape of rabbit gut microbiota shaped by the infection of precocious parasites of Eimeria intestinalis
Chao Li, Xianyong Liu, Geru Tao, Yunzhou Wang, Shaoqiang Wu, Jingxia Suo, Yanli Lv, Fang Yu, Xun Suo
Veterinary Parasitology.2021; 300: 109579. CrossRef
Co-digestive performance of food waste and hydrothermal pretreated corn cob
Meng Gao, Huijing Zou, Wenjing Tian, Dezhi Shi, Hongxiang Chai, Li Gu, Qiang He, Walter Z. Tang
Science of The Total Environment.2021; 768: 144448. CrossRef
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Maike Sperk, Anoop T. Ambikan, Shilpa Ray, Kamal Singh, Flora Mikaeloff, Rafael Ceña Diez, Ashwathy Narayanan, Jan Vesterbacka, Piotr Nowak, Anders Sönnerborg, Ujjwal Neogi, Viviana Simon
Journal of Virology.2021;[Epub] CrossRef
Transformation of fish waste protein to Hermetia illucens protein improves the efficacy of poultry by-products in the culture of juvenile barramundi, Lates calcarifer
Md Reaz Chaklader, Janet Howieson, Md Javed Foysal, Ravi Fotedar
Science of The Total Environment.2021; 796: 149045. CrossRef
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Bioscience of Microbiota, Food and Health.2021; 40(2): 92. CrossRef
Conditions stimulating neutral detergent fiber degradation by dosing branched-chain volatile fatty acids. III: Relation with solid passage rate and pH on prokaryotic fatty acid profile and community in continuous culture
Y. Roman-Garcia, K.E. Mitchell, C. Lee, M.T. Socha, T. Park, B.A. Wenner, J.L. Firkins
Journal of Dairy Science.2021; 104(9): 9868. CrossRef
In-Feed Supplementation of Resin Acid-Enriched Composition Modulates Gut Microbiota, Improves Growth Performance, and Reduces Post-Weaning Diarrhea and Gut Inflammation in Piglets
Md Karim Uddin, Shah Hasan, Md. Rayhan Mahmud, Olli Peltoniemi, Claudio Oliviero
Animals.2021; 11(9): 2511. CrossRef
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M.J. Gallardo-Altamirano, P. Maza-Márquez, N. Montemurro, S. Pérez, B. Rodelas, F. Osorio, C. Pozo
Science of The Total Environment.2021; 789: 147869. CrossRef
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Feng Jiang, Hongmei Gao, Wen Qin, Pengfei Song, Haijing Wang, Jingjie Zhang, Daoxin Liu, Dong Wang, Tongzuo Zhang
Frontiers in Microbiology.2021;[Epub] CrossRef
Environmentally enriched housing conditions affect pig welfare, immune system and gut microbiota in early life
Caifang Wen, Ingrid van Dixhoorn, Dirkjan Schokker, Henri Woelders, Norbert Stockhofe-Zurwieden, Johanna M. J. Rebel, Hauke Smidt
Animal Microbiome.2021;[Epub] CrossRef
Effects of Iron and Zinc Biofortified Foods on Gut Microbiota In Vivo (Gallus gallus): A Systematic Review
Mariana Juste Contin Gomes, Hércia Stampini Duarte Martino, Elad Tako
Nutrients.2021; 13(1): 189. CrossRef
Characterization of a novel Pantoea symbiont allows inference of a pattern of convergent genome reduction in bacteria associated with Pentatomidae
Marzieh Kashkouli, Michele Castelli, Anna M. Floriano, Claudio Bandi, Sara Epis, Yaghoub Fathipour, Mohammad Mehrabadi, Davide Sassera
Environmental Microbiology.2021; 23(1): 36. CrossRef
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Journal of Proteome Research.2021; 20(1): 982. CrossRef
Zinc Status Index (ZSI) for Quantification of Zinc Physiological Status
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Olivier Chapleur, Simon Poirier, Angéline Guenne, Kim-Anh Lê Cao
Chemosphere.2021; 283: 131309. CrossRef
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James Gaffney, Jordan Embree, Sean Gilmore, Mallory Embree
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Microorganisms.2021; 9(5): 888. CrossRef
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Svetlana Kononova, Ekaterina Litvinova, Timur Vakhitov, Maria Skalinskaya, Stanislav Sitkin
International Journal of Molecular Sciences.2021; 22(8): 3854. CrossRef
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Tingting Bi, Ruiqi Feng, Libin Zhan, Weiming Ren, Xiaoguang Lu
Frontiers in Cell and Developmental Biology.2021;[Epub] CrossRef
Antibiotic resistance, antimicrobial residues, and bacterial community diversity in pasture-raised poultry, swine, and beef cattle manures
Michael James Rothrock, Byeng Ryel Min, Lana Castleberry, Heidi Waldrip, David Parker, David Brauer, Dipti Pitta, Nagaraju Indugu
Journal of Animal Science.2021;[Epub] CrossRef
Succession Analysis of Gut Microbiota Structure of Participants from Long-Lived Families in Hechi, Guangxi, China
Minhong Ren, He Li, Zhen Fu, Quanyang Li
Microorganisms.2021; 9(12): 2524. CrossRef
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Uyory Choe, Jianghao Sun, Elena Bailoni, Pei Chen, Yanfang Li, Boyan Gao, Thomas T. Y. Wang, Jiajia Rao, Liangli (Lucy) Yu
Molecules.2021; 26(5): 1478. CrossRef
Type IV pili are widespread among non‐pathogenic Gram‐positive gut bacteria with diverse carbohydrate utilization patterns
Vita Rozman, Tomaž Accetto, Sylvia H. Duncan, Harry J. Flint, Maša Vodovnik
Environmental Microbiology.2021; 23(3): 1527. CrossRef
Steam Explosion Pretreatment Changes Ruminal Fermentation in vitro of Corn Stover by Shifting Archaeal and Bacterial Community Structure
Kun Wang, Xuemei Nan, Jinjin Tong, Guangyong Zhao, Linshu Jiang, Benhai Xiong
Frontiers in Microbiology.2020;[Epub] CrossRef
Rumen Microbiome Composition Is Altered in Sheep Divergent in Feed Efficiency
Steven McLoughlin, Charles Spillane, Noel Claffey, Paul E. Smith, Tommy O’Rourke, Michael G. Diskin, Sinéad M. Waters
Frontiers in Microbiology.2020;[Epub] CrossRef
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Detong Wang, Shuping Guo, Hongxia He, Li Gong, Hongzhou Cui
Frontiers in Cellular and Infection Microbiology.2020;[Epub] CrossRef
SOD1 deficiency alters gastrointestinal microbiota and metabolites in mice
Haruka Sagi, Shuichi Shibuya, Tamotsu Kato, Yumiko Nakanishi, Arisa Tsuboi, Shigeharu Moriya, Hiroshi Ohno, Hirokuni Miyamoto, Hiroaki Kodama, Takahiko Shimizu
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Applied and Environmental Microbiology.2020;[Epub] CrossRef
Developmental symbiosis facilitates the multiple origins of herbivory
Scott F. Gilbert
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Zhenchi Li, Jinglin Tian, Yukun Lai, Chiu-Hong Lee, Zongwei Cai, Chun-Fai Yu
Marine Drugs.2020; 18(5): 278. CrossRef
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Yuri Nishiwaki-Akine, Sui Kanazawa, Norihisa Matsuura, Ryoko Yamamoto-Ikemoto
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Yongqiang Hu, Yuyong He, Shan Gao, Zhiqiang Liao, Tao Lai, Haimei Zhou, Qianlin Chen, Lingyu Li, Haijun Gao, Wei Lu
Scientific Reports.2020;[Epub] CrossRef
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Sang Jin Rhee, Hyeyoung Kim, Yunna Lee, Hyun Jeong Lee, C. Hyung Keun Park, Jinho Yang, Yoon-Keun Kim, Sungmin Kym, Yong Min Ahn
Journal of Psychiatric Research.2020; 123: 31. CrossRef
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Qiongdan Hu, Kaiyan Wu, Wei Pan, Yan Zeng, Keqin Hu, Dingguo Chen, Xinchun Huang, Qiong Zhang
Journal of International Medical Research.2020;[Epub] CrossRef
Gut microbiota derived metabolites contribute to intestinal barrier maturation at the suckling-to-weaning transition
Martin Beaumont, Charlotte Paës, Eloïse Mussard, Christelle Knudsen, Laurent Cauquil, Patrick Aymard, Céline Barilly, Béatrice Gabinaud, Olivier Zemb, Sandra Fourre, Roselyne Gautier, Corinne Lencina, Hélène Eutamène, Vassilia Theodorou, Cécile Canlet, Sy
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Peijun Tian, Kenneth J. O'Riordan, Yuan-kun Lee, Gang Wang, Jianxin Zhao, Hao Zhang, John F. Cryan, Wei Chen
Neurobiology of Stress.2020; 12: 100216. CrossRef
Anti-Inflammatory Activity of a Peptide from Skipjack (Katsuwonus pelamis)
Zhi-gao Wang, Xiao-guo Ying, Peng Gao, Chun-li Wang, Yi-fan Wang, Xin-wei Yu, Jing Chen, Bin Wang, Hong-yu Luo
Marine Drugs.2019; 17(10): 582. CrossRef
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Matthew Warren, Haley Hallowell, Keah Higgins, Mark Liles, Wendy Hood
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Response of Beef Cattle Fecal Microbiota to Grazing on Toxic Tall Fescue
Ryan S. Mote, Nicholas S. Hill, Joseph H. Skarlupka, Zachary B. Turner, Zachary P. Sanders, Dean P. Jones, Garret Suen, Nikolay M. Filipov, Charles M. Dozois
Applied and Environmental Microbiology.2019;[Epub] CrossRef
Ingestion of Bifidobacterium longum subspecies infantis strain CCFM687 regulated emotional behavior and the central BDNF pathway in chronic stress-induced depressive mice through reshaping the gut microbiota
Peijun Tian, Renying Zou, Linhong Song, Xu Zhang, Bin Jiang, Gang Wang, Yuan-kun Lee, Jianxin Zhao, Hao Zhang, Wei Chen
Food & Function.2019; 10(11): 7588. CrossRef
Synergistic effects of APOE and sex on the gut microbiome of young EFAD transgenic mice
Juan Maldonado Weng, Ishita Parikh, Ankur Naqib, Jason York, Stefan J. Green, Steven Estus, Mary Jo LaDu
Molecular Neurodegeneration.2019;[Epub] CrossRef
Comparative analysis of the gut microbiota in centenarians and young adults shows a common signature across genotypically non-related populations
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Mechanisms of Ageing and Development.2019; 179: 23. CrossRef
Gut microbiomes and their metabolites shape human and animal health
Woojun Park
Journal of Microbiology.2018; 56(3): 151. CrossRef

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